Citrus Sinensis ID: 020756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKAAEAAAAGI
Secondary Structure (PSIPRED)
ccccEEEEEEEEccccccccEEEEEcEEcccEEEEEcccccEEEEEEEEccccccEEEEccEEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEcccccccccEEEEEEccccEEEEEEccccEEEEEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccccHEEccEEEccEEEEEEcccccEEEEEEEEccccccccEEccEEEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccccEEEEccccEEEEEcccccccEEEEcccccEEEEEccccccccEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEcccccEccccEEEEEEccEEEEEEccHHHHEEEcccccccccccccccccccccccccccHHHHcccHHHHcccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHcHHcccccc
Coil and Loop (DISEMBL)
MGSPASVQIYACgkdlqsqplarrsffRCSTVQLNWNRGSTGLLAVAqsdvdktnqsyygesklnylttdgtheglvplrkegpvhdvqwsysgsefavvygfmpasatifnkkcrpilelgsgpyntvrwnpkgkflclagfgnlpgdmafwdyvdgkqlgttraecsvtsewspdgryfmtattaprlqidngikifhhngSLFFKKMFDKLFqaewkpvspdkfgdISELIKSVGSLKvaetksqgsgsasrkaapsnptatkpaayrpphaKQAAAIQAEllgesptpemsKNALRNKKKREKQKEKKAAEAAAAGI
Flexible Loop (DISEMBL)
MGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEcsvtsewspdgryFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAetksqgsgsasrkaapsnpTATKPAAYRPPHAKQAAAIQAELlgesptpemsknalrnkkkrekqkeKKAAEAAAAGI
Low Complexity Region (SEG)
MGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNkkkrekqkekkaaeaaaaGI
Disordered region (IsUnstruct)
*******QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIK**************************************************************************************
Disordered Region (DISOPRED)
**SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPD************************************************************************************************
Disordered Region (DISEMBL)
MGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSL*************************************AAAIQAELLGESP*******************************
Disordered Region (DISPRO)
***PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI*******************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSxxxxxxxxxxxxxxxxxxxxxxxxGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q8BJW6	581	Eukaryotic translation in	yes	no	0.894	0.493	0.384	9e-55
Q9BY44	585	Eukaryotic translation in	yes	no	0.834	0.458	0.383	2e-54
Q5ZKC1	586	Eukaryotic translation in	yes	no	0.887	0.486	0.386	9e-54
Q4QRJ7	580	Eukaryotic translation in	yes	no	0.834	0.462	0.379	3e-53
Q9VNX8	638	Eukaryotic translation in	yes	no	0.825	0.415	0.383	7e-53
Q54PV7	608	Eukaryotic translation in	yes	no	0.822	0.434	0.364	5e-51
Q7ZY11	582	Eukaryotic translation in	N/A	no	0.897	0.494	0.376	1e-49
O74965	576	Eukaryotic translation in	yes	no	0.822	0.458	0.363	2e-49
Q19052	570	Eukaryotic translation in	yes	no	0.819	0.461	0.348	3e-46
P53235	642	Eukaryotic translation in	yes	no	0.978	0.489	0.301	4e-42

>sp|Q8BJW6|EIF2A_MOUSE Eukaryotic translation initiation factor 2A OS=Mus musculus GN=Eif2a PE=2 SV=2

 Score =  214 bits (544), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 127/330 (38%), Positives = 176/330 (53%), Gaps = 43/330 (13%)

Query: 2   GSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
           G+P+ V++Y        Q  LA +SFF+   V + WN+ +T +L +A ++VDKT  SYYG
Sbjct: 193 GAPSFVRLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYG 252

Query: 61  ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
           E  L+Y+ T+G    +V L K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ +
Sbjct: 253 EQTLHYIATNG-ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFD 311

Query: 121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
            G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct: 312 FGTGPRNAAFYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 371

Query: 181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIK 235
            +TAT APRL+++NG KI+H+ GSL  K  +D     +L+Q  W+P     F D      
Sbjct: 372 ILTATCAPRLRVNNGYKIWHYTGSLLHK--YDVPSNGELWQVSWQP-----FLD------ 418

Query: 236 SVGSLKVAETKSQGSGSASRKAAPSNPTATKP---AAYRPPHAKQAAAIQAELLGESPTP 292
             G       K Q        A PS   + +P    AYRPP  +      ++L  E P  
Sbjct: 419 --GIFPAKTIKYQ--------AVPSEVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQ 468

Query: 293 EM----------SKNALRNKKKREKQKEKK 312
            M          SK AL+N++K E +K  K
Sbjct: 469 NMKPHPGSDKPLSKTALKNQRKHEAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.
Mus musculus (taxid: 10090)

>sp|Q9BY44|EIF2A_HUMAN Eukaryotic translation initiation factor 2A OS=Homo sapiens GN=EIF2A PE=1 SV=3

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/310 (38%), Positives = 166/310 (53%), Gaps = 42/310 (13%)

Query: 21  LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 80
           LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+ T+G    +V L 
Sbjct: 213 LANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNG-ESAVVQLP 271

Query: 81  KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCL 140
           K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ + G+GP N   ++P G  L L
Sbjct: 272 KNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVL 331

Query: 141 AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200
           AGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+++NG KI+H
Sbjct: 332 AGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWH 391

Query: 201 HNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASR 255
           + GS+  K  +D     +L+Q  W+P     F                      + + + 
Sbjct: 392 YTGSILHK--YDVPSNAELWQVSWQPFLDGIF---------------------PAKTITY 428

Query: 256 KAAPSNPTATKP---AAYRPPHAKQAAAIQAELLGESPTPEM----------SKNALRNK 302
           +A PS     +P    AYRPP  +      ++L  E P   M          SK AL+N+
Sbjct: 429 QAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQ 488

Query: 303 KKREKQKEKK 312
           +K E +K  K
Sbjct: 489 RKHEAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Homo sapiens (taxid: 9606)

>sp|Q5ZKC1|EIF2A_CHICK Eukaryotic translation initiation factor 2A OS=Gallus gallus GN=EIF2A PE=2 SV=1

 Score =  210 bits (535), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 124/321 (38%), Positives = 170/321 (52%), Gaps = 36/321 (11%)

Query: 2   GSPASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
           G+P+ V++Y        Q  LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYG
Sbjct: 193 GAPSFVRLYQYPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYG 252

Query: 61  ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
           E  L+Y+ T+G    +V L K GP++DV W+ +  EF  VYGFMPA AT+FN KC P+ +
Sbjct: 253 EQTLHYIATNG-ESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFD 311

Query: 121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
            G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct: 312 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 371

Query: 181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSV 237
            +TAT APRL++ NG KI+H+ GS+         ++++Q  W+P     F D        
Sbjct: 372 IVTATCAPRLRVSNGYKIWHYTGSVLHNYEVPSNEEMWQVSWQP-----FLD-------- 418

Query: 238 GSLKVAETKSQGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESPTPEM-- 294
           G   V   K Q   S    A P      KPA AYRPP  +      ++L  + P   M  
Sbjct: 419 GVFPVKAVKYQAVPSELPSAEP------KPAQAYRPPALRNKPVTSSKLHEDEPPQNMKP 472

Query: 295 ---------SKNALRNKKKRE 306
                    SK AL+N+KK E
Sbjct: 473 QSGSSEKPLSKTALKNQKKHE 493

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Gallus gallus (taxid: 9031)

>sp|Q4QRJ7|EIF2A_DANRE Eukaryotic translation initiation factor 2A OS=Danio rerio GN=eif2a PE=2 SV=1

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 167/311 (53%), Gaps = 43/311 (13%)

Query: 21  LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 80
           LA +SFF+   V + WN+ +T +L  A ++VDKT  SYYGE  L+Y+ T+G    +V L 
Sbjct: 212 LANKSFFKADKVNMLWNKKATAVLVTASTEVDKTGASYYGEQTLHYVATNG-ESAVVQLP 270

Query: 81  KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCL 140
           K GP++DV WS + +EF VVYGFMPA AT+FN KC  + + G+GP N   ++P+G  L L
Sbjct: 271 KNGPIYDVSWSPNSTEFCVVYGFMPAKATVFNNKCESVFDFGTGPRNAAFYSPQGHILVL 330

Query: 141 AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200
           AGFGNL G M  WD    KQ+   +AE +    W PDG + +TAT +PRL+  NG KI+H
Sbjct: 331 AGFGNLRGQMEVWDVKKYKQVSKPQAEDTTHFSWCPDGEHIVTATCSPRLRASNGYKIWH 390

Query: 201 HNGSLFFKKMF---DKLFQAEWKP----VSPDKFGDISELIKSVGSLKVAETKSQGSGSA 253
           + G++ +K       +L++  W+P    V P++      L   +GS              
Sbjct: 391 YTGTVLYKHETPSGKELWEVLWQPFPAGVFPERAVKYQALPSELGS-------------- 436

Query: 254 SRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESPTPEM-----------SKNALRN 301
                    T  KPA AYRPP  +      +  L E   P+            SK AL+N
Sbjct: 437 ---------TEAKPAQAYRPPALRNKPQTASSKLHEEEPPQNMKPGAAGEKQPSKAALKN 487

Query: 302 KKKREKQKEKK 312
           +K+RE +K  K
Sbjct: 488 QKRREAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Danio rerio (taxid: 7955)

>sp|Q9VNX8|EIF2A_DROME Eukaryotic translation initiation factor 2A OS=Drosophila melanogaster GN=CG7414 PE=1 SV=1

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 167/295 (56%), Gaps = 30/295 (10%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G+P+  ++Y      Q+Q +A +SFF+   V++ WN+  +GLL +  ++VDK+  SYYG 
Sbjct: 210 GAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSGLLLLTSTEVDKSGASYYGN 269

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
             ++++ T G     VPL KEGPVH V+WS   +EF VVYGFMP+ A ++N KC  + + 
Sbjct: 270 QAVHFMATKGDTCS-VPLSKEGPVHCVKWSPKATEFVVVYGFMPSKAALYNLKCDVVFDF 328

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G GP N   +NP G  + LAGFGNLPG +  WD    ++L   +   +   EW P+G +F
Sbjct: 329 GEGPRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWF 388

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSVG 238
           +TATTAPRL+I NG K++H++G+L  + M+    +L   EW+     +F D     K+  
Sbjct: 389 VTATTAPRLRISNGFKVYHYSGALLHETMWPQGQELLGIEWQ-----QFAD-----KTFS 438

Query: 239 SLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPE 293
             K+ + K +G  S       S P A+K  AY PPH +        LL E   PE
Sbjct: 439 EPKITKAKHEGIKS-------SQPEASK-KAYTPPHLR--------LLKEGKNPE 477

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q54PV7|EIF2A_DICDI Eukaryotic translation initiation factor 2A OS=Dictyostelium discoideum GN=eif2a PE=3 SV=1

 Score =  201 bits (512), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/274 (36%), Positives = 162/274 (59%), Gaps = 10/274 (3%)

Query: 3   SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 62
           +P S +IY+      ++  +   FF+ S  ++ WN+    +L    +D DK+ +SYYGE+
Sbjct: 238 TPGSARIYSYPT--VNEYCSHLKFFKASEAKVLWNKKGNAILVHTFTDTDKSGKSYYGET 295

Query: 63  KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 122
            L +L+ DG+   L     +GP+HDVQWS +  +F V YG MP+  T+FN K  P+++ G
Sbjct: 296 GLWFLSQDGSSFNL---NIKGPIHDVQWSPTLDQFMVCYGNMPSQTTLFNLKGEPLVDFG 352

Query: 123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 182
             P NT+R++P G+ LCL GFGNL GDM FWD    K++  T++ C++ +EWS D  +FM
Sbjct: 353 LNPRNTIRFSPNGQLLCLGGFGNLQGDMDFWDLTRYKRICGTQSHCAIYTEWSADSVHFM 412

Query: 183 TATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKV 242
           TA  +PR+++DNG+KI  ++ ++ +++   +L+QA W+P++P  F +   +  S+   K 
Sbjct: 413 TAVLSPRIRVDNGVKIIKYDNTIVYQENIPELYQASWRPLNPLVFPNERIVYPSIQQQKE 472

Query: 243 AETKSQGSGSASRK---AAPSNPTATKPAAYRPP 273
           +  + Q     S +   AAP  P  T P A   P
Sbjct: 473 SSPQPQKYTPPSLRNMQAAP--PVVTSPPAMGAP 504

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7ZY11|EIF2A_XENLA Eukaryotic translation initiation factor 2A OS=Xenopus laevis GN=eif2a PE=2 SV=2

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 169/308 (54%), Gaps = 20/308 (6%)

Query: 2   GSPASVQIYACGK-DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
           G+P+ V++Y        +  LA +SFF+   V + WN  +T +L  A +DVDKT  SYYG
Sbjct: 195 GAPSFVRLYQYPNFSGPNSALANKSFFKADRVAMLWNSKATAVLVTASTDVDKTGASYYG 254

Query: 61  ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
           E  L+Y+  +G    +V L K GP++DV W+ + +EF VVYGFMPA AT+FN KC PI +
Sbjct: 255 EQTLHYIAVNG-ESAVVQLPKNGPIYDVTWNKNATEFCVVYGFMPAKATVFNLKCDPIFD 313

Query: 121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
            G+GP N   ++P+G  L LAGFGNL G M  WD    K +    A  +    W P+G +
Sbjct: 314 FGTGPRNAAFYSPQGHILVLAGFGNLRGQMEVWDVKKYKLISKPTASDATFFSWCPNGEH 373

Query: 181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIK 235
            +TAT +PRL++ NG KI+H+ G+L  K  +D     +L+Q  W+P     F   + + +
Sbjct: 374 IITATCSPRLRVGNGYKIWHYTGTLLHK--YDVPANSELWQVSWQPFPDGVFPAKAIVYQ 431

Query: 236 SV-GSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEM 294
           +V G L   E+K      A R  A  N    KP +    H  +       ++ +S    M
Sbjct: 432 AVPGDLPTQESK---PAEAYRPPALRN----KPVSSYKLHEDEPP---QSMMPQSTEKPM 481

Query: 295 SKNALRNK 302
           SK AL+N+
Sbjct: 482 SKTALKNQ 489

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Xenopus laevis (taxid: 8355)

>sp|O74965|EIF2A_SCHPO Eukaryotic translation initiation factor 2A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4B4.04 PE=3 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 160/278 (57%), Gaps = 14/278 (5%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G+PASV+ Y+      + PL++++FF+   VQ  WN   T LL + Q++VDK+N++YYGE
Sbjct: 190 GAPASVRTYSIPN--FNSPLSQKTFFKADKVQFKWNALGTSLLVLTQTEVDKSNKNYYGE 247

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           + L  L   G  +  V L +EGP+HDV W+    EF +VYG+MPA   IF+ +   +  +
Sbjct: 248 TNLYLLGITGQFDCRVDLDREGPIHDVCWNADSKEFGIVYGYMPAKTAIFDNRANVVSII 307

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRY 180
              P NT+ ++P  +++ LAGFGNL G +  +D  +  K++ T  A      E+SPD ++
Sbjct: 308 PPAPRNTLIFSPNSRYILLAGFGNLQGSIDIFDAANNMKKITTVEAANCTYCEFSPDSQF 367

Query: 181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEW--KPVSPDKFGDISELIKSVG 238
            +TA T+PRL++DN IKI+H  G+  F + F++L+QA W  +P++P    +         
Sbjct: 368 LLTAVTSPRLRVDNSIKIWHITGAPMFYEEFNELYQAFWRPRPLNPTLLQN--------- 418

Query: 239 SLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAK 276
           +L  A   S  +  AS     + P+     AYRPP A+
Sbjct: 419 ALTSASLPSPPTPHASASKLAAKPSVKPAGAYRPPGAR 456

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q19052|EIF2A_CAEEL Eukaryotic translation initiation factor 2A OS=Caenorhabditis elegans GN=E04D5.1 PE=3 SV=2

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 24/287 (8%)

Query: 3   SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 62
           +PA V+++   +      +  R+FF+     + WN+    LL +A  +VDKTNQSYYGE 
Sbjct: 199 TPARVRVHRVSESFPV--VGNRTFFKSDKAVMTWNQRGQSLLILASVEVDKTNQSYYGEQ 256

Query: 63  KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 122
            L  +        +VPL K+GP++  +W+ +G EFAV YG+MPA  T +N +  PI +  
Sbjct: 257 SLYLINIQSGESVVVPLEKKGPIYAAKWNPNGREFAVCYGYMPAKVTFYNPRGVPIFDTI 316

Query: 123 SGPYNTVRWNPKGKFLCLAGFGNLP-GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
            GP N V +N  G  + + GFGN+  G M FWD    K++ +     +   +W+PDG++F
Sbjct: 317 EGPRNDVFYNAFGNIVLICGFGNIAKGKMEFWDVETKKEIISIEVPNTTLFDWAPDGQHF 376

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFD---KLFQAEWKPVSP-DKFGDISELIKSV 237
           +T TTAPRL+IDN  + +H+ G +  +  F+   +L++  W+P++  +KF  I EL K  
Sbjct: 377 VTCTTAPRLRIDNSYRFWHYTGRMLAETHFESPKELWEVRWRPMTGYNKFA-IKELTK-- 433

Query: 238 GSLKVAETKSQGSGSASRKAAPSNPTATKPA-------AYRPPHAKQ 277
                  T    +G   RK   S+P    PA       AY PPH ++
Sbjct: 434 -------TDKMAAGLPIRKKDASHPLNNVPAGAVRQAGAYIPPHLRK 473

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|P53235|EIF2A_YEAST Eukaryotic translation initiation factor 2A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR054W PE=1 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 177/361 (49%), Gaps = 47/361 (13%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PA + I+A  +   ++ +A ++FF+  + QL WN     +L +A +D D +N+SYYGE
Sbjct: 206 GKPAQLIIWALSEGKITKKIASKTFFKADSCQLKWNPLGNAILCLAITDFDSSNKSYYGE 265

Query: 62  SKLNYLTTDGTHEGL------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC 115
           + L  L+  G +  L      V L   GPVHD  WS +  +F V+ G+MPA+ + F+ + 
Sbjct: 266 NTLYLLSFQGVNGTLGGNSVRVSLTT-GPVHDFTWSPTSRQFGVIAGYMPATISFFDLRG 324

Query: 116 RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTSEW 174
             +  L     NT+ ++P G ++ +AGFGNL G +   D +D  K +    A  +   +W
Sbjct: 325 NVVHSLPQQAKNTMLFSPSGHYILIAGFGNLQGSVEILDRLDKFKCVSKFDATNTSVCKW 384

Query: 175 SPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWK-------------- 220
           SP G + MTATT+PRL++DNG+KI+H +GSL F K F +L + +W+              
Sbjct: 385 SPGGEFIMTATTSPRLRVDNGVKIWHVSGSLVFVKEFKELLKVDWRSPCNYKTLENKDEA 444

Query: 221 -----------PVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKP-- 267
                      P+       +   I +   L++  +  +       + A SN   +K   
Sbjct: 445 FFENHIINNWEPLPDSTTSSLDPKISNKSELQIHSSVQEYISQHPSREASSNGNGSKAKA 504

Query: 268 -AAYRPPHAKQAAAIQAELLGESP----------TPEMSKNALRNKKKREKQKEKKAAEA 316
             AY+PPHA++    +  + G  P           P MS N   N K R ++  KK++E 
Sbjct: 505 GGAYKPPHARRTGGGRI-VPGVPPGAAKKTIPGLVPGMSANKDANTKNRRRRANKKSSET 563

Query: 317 A 317
           +
Sbjct: 564 S 564

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins. Specifically associates with both 40S subunits and 80 S ribosomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
255579468	584	Eukaryotic translation initiation factor	0.928	0.510	0.848	1e-152
449484716	519	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.987	0.610	0.798	1e-145
388512815	516	unknown [Medicago truncatula]	0.990	0.616	0.773	1e-141
357475551	516	Eukaryotic translation initiation factor	0.990	0.616	0.776	1e-141
356521469	517	PREDICTED: eukaryotic translation initia	0.990	0.615	0.758	1e-140
225434102	518	PREDICTED: eukaryotic translation initia	0.915	0.567	0.785	1e-139
356500094	518	PREDICTED: eukaryotic translation initia	0.990	0.613	0.758	1e-139
224121796	474	predicted protein [Populus trichocarpa]	0.872	0.590	0.841	1e-138
18410291	513	eukaryotic translation initiation factor	0.928	0.580	0.765	1e-138
297839187	511	hypothetical protein ARALYDRAFT_476449 [	0.928	0.583	0.765	1e-138

>gi|255579468|ref|XP_002530577.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223529876|gb|EEF31807.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 253/298 (84%), Positives = 274/298 (91%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           GSPASVQI+AC KD+QSQP+ARRSFFRCSTVQLNWNRGSTGLL V QSD DKTNQSYYGE
Sbjct: 266 GSPASVQIFACTKDMQSQPVARRSFFRCSTVQLNWNRGSTGLLVVVQSDFDKTNQSYYGE 325

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           SKLNYLTTDGTHEGLVPLRKEGP+HDVQWSYSGS+FAVVYGFMPASAT+F+KKC P+LEL
Sbjct: 326 SKLNYLTTDGTHEGLVPLRKEGPIHDVQWSYSGSQFAVVYGFMPASATLFDKKCNPLLEL 385

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G+GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV+ KQLGTTRAECSVTSEWSPDG YF
Sbjct: 386 GTGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVNKKQLGTTRAECSVTSEWSPDGCYF 445

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFH+NGSL+FKKMF KL+QAEWKP SPDKF +I+EL KSV SLK
Sbjct: 446 MTATTAPRLQVDNGIKIFHYNGSLYFKKMFGKLYQAEWKPESPDKFDEIAELAKSVDSLK 505

Query: 242 VAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 299
           + ETK QG G+ SRK AP+NP A KPAAYRPPHAK AAA+QAEL G S T +MSKNAL
Sbjct: 506 IEETKLQGQGATSRKTAPTNPPAQKPAAYRPPHAKSAAAVQAELFGGSSTEQMSKNAL 563

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484716|ref|XP_004156960.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 2A-like [Cucumis sativus]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/322 (79%), Positives = 284/322 (88%), Gaps = 5/322 (1%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PASVQI+ACG D Q+QP+ARR FFRCSTVQLNWN GSTGLL V Q+DVDKTNQSYYGE
Sbjct: 195 GVPASVQIFACG-DSQTQPIARRXFFRCSTVQLNWNNGSTGLLIVVQADVDKTNQSYYGE 253

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           +KLNYLTTDG HEGLVPLRKEGPVHDVQWS SGSEFAVVYGFMPA AT+F+KKC+P+LEL
Sbjct: 254 TKLNYLTTDGVHEGLVPLRKEGPVHDVQWSQSGSEFAVVYGFMPARATVFDKKCKPLLEL 313

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY + KQLG T+AECSVTSEWSPDG++F
Sbjct: 314 GEGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYKEXKQLGRTKAECSVTSEWSPDGQFF 373

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFH+NG+L+FKKMFDKLFQA+WKP S DKFG+I  L+KSV SL 
Sbjct: 374 MTATTAPRLQVDNGIKIFHYNGALYFKKMFDKLFQADWKPESSDKFGEIDLLVKSVESLN 433

Query: 242 VAETKSQGSGS----ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKN 297
           V + K+QG GS     S+K APSNP   KPAAYRPPHAK AAAIQAELLGE P   +SKN
Sbjct: 434 VDQKKTQGQGSKVSQTSQKTAPSNPPVQKPAAYRPPHAKNAAAIQAELLGEGPKETLSKN 493

Query: 298 ALRNKKKREKQKEKKAAEAAAA 319
           A+RNKKKREKQKEKKA EAA++
Sbjct: 494 AMRNKKKREKQKEKKAGEAASS 515

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512815|gb|AFK44469.1| unknown [Medicago truncatula]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/322 (77%), Positives = 278/322 (86%), Gaps = 4/322 (1%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PASVQI+ACG   Q+QP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGE
Sbjct: 195 GVPASVQIFACGDASQTQPMARRSFFRCSTTQLKWNHGSTGLLIVVQSDVDKTNQSYYGE 254

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           SKL YLTTDG HEGLVPLRKEGP+HD QWS SGSEFAVVYGFMPA AT+F+KKCRP+LEL
Sbjct: 255 SKLYYLTTDGVHEGLVPLRKEGPIHDAQWSNSGSEFAVVYGFMPAKATLFDKKCRPLLEL 314

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G+GPYNT+RWNPKGKFLCLAGFGNLPGDM FWDYV+ KQL +T+AE SV+SEWSPDG YF
Sbjct: 315 GTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYF 374

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFH+NGSL+FK+MFDKL+QA+WKP SP KFGDI+ELIKS+ S+K
Sbjct: 375 MTATTAPRLQVDNGIKIFHYNGSLYFKQMFDKLYQADWKPESPSKFGDITELIKSLDSIK 434

Query: 242 VAETKSQGSG----SASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKN 297
           + + K  G G      S KA+ +NPTA KPAAYRPPHAK AAAIQAELLGES    +SKN
Sbjct: 435 LEDKKPSGQGPKPTQVSTKASSANPTAQKPAAYRPPHAKTAAAIQAELLGESSAESLSKN 494

Query: 298 ALRNKKKREKQKEKKAAEAAAA 319
           ALRNKKKR KQKEKKAA  A++
Sbjct: 495 ALRNKKKRGKQKEKKAAADASS 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475551|ref|XP_003608061.1| Eukaryotic translation initiation factor 2A [Medicago truncatula] gi|355509116|gb|AES90258.1| Eukaryotic translation initiation factor 2A [Medicago truncatula]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/322 (77%), Positives = 279/322 (86%), Gaps = 4/322 (1%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PASVQI+ACG   Q+QP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGE
Sbjct: 195 GVPASVQIFACGDASQTQPMARRSFFRCSTTQLKWNHGSTGLLIVVQSDVDKTNQSYYGE 254

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           SKL YLTTDG HEGLVPLRKEGP+HD QWS SGSEFAVVYGFMPA AT+F+KKCRP+LEL
Sbjct: 255 SKLYYLTTDGVHEGLVPLRKEGPIHDAQWSNSGSEFAVVYGFMPAKATLFDKKCRPLLEL 314

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G+GPYNT+RWNPKGKFLCLAGFGNLPGDM FWDYV+ KQL +T+AE SV+SEWSPDG YF
Sbjct: 315 GTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYF 374

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFH+NGSL+FK+MFDKL+QA+WKP SP KFGDI+ELIKS+ S+K
Sbjct: 375 MTATTAPRLQVDNGIKIFHYNGSLYFKQMFDKLYQADWKPESPSKFGDITELIKSLDSIK 434

Query: 242 VAETKSQGSG----SASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKN 297
           + + K  G G      S KA+ +NPTA KPAAYRPPHAK AAAIQAELLGES    +SKN
Sbjct: 435 LEDKKPSGQGPKPTQVSTKASSANPTAQKPAAYRPPHAKTAAAIQAELLGESSAESLSKN 494

Query: 298 ALRNKKKREKQKEKKAAEAAAA 319
           ALRNKKKREKQKEKKAA  A++
Sbjct: 495 ALRNKKKREKQKEKKAAADASS 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521469|ref|XP_003529378.1| PREDICTED: eukaryotic translation initiation factor 2A-like [Glycine max]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/323 (75%), Positives = 277/323 (85%), Gaps = 5/323 (1%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PASVQI+ACG   QSQP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGE
Sbjct: 195 GIPASVQIFACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGE 254

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           SKL YLTTDG HEGLVPLRK+GP+HD QWSYSG EFAVVYGFMPA AT+F+KKC P+LEL
Sbjct: 255 SKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLEL 314

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G+GPYNT+RWNPKGKFLCLAGFGNLPGDM FWDY+D KQLG T+AE SVTSEWSPDG YF
Sbjct: 315 GTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYF 374

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFH+NGSL+FKKMFDKL+QA+WKP SP KFGDI+ELIKS+  ++
Sbjct: 375 MTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQADWKPESPSKFGDIAELIKSLNLVQ 434

Query: 242 VAETKSQGSG-----SASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSK 296
           + + K  G G       S KA+ +NP   KPAAYRPPHAK A+AIQAEL GE+P   +SK
Sbjct: 435 LEDKKPSGQGPPKSTQTSTKASSTNPPTQKPAAYRPPHAKNASAIQAELFGETPAEPLSK 494

Query: 297 NALRNKKKREKQKEKKAAEAAAA 319
           NALRNKKKREKQKEKKA++A+++
Sbjct: 495 NALRNKKKREKQKEKKASDASSS 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434102|ref|XP_002276161.1| PREDICTED: eukaryotic translation initiation factor 2A isoform 1 [Vitis vinifera] gi|359478324|ref|XP_003632107.1| PREDICTED: eukaryotic translation initiation factor 2A isoform 2 [Vitis vinifera] gi|296084282|emb|CBI24670.3| unnamed protein product [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/298 (78%), Positives = 261/298 (87%), Gaps = 4/298 (1%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PASVQI+ACG++  SQP+ARRSFFRCSTVQL+WNRGSTGLL + Q+DVDKTNQSY+GE
Sbjct: 192 GIPASVQIFACGENSMSQPVARRSFFRCSTVQLSWNRGSTGLLVLVQADVDKTNQSYFGE 251

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           SKLNYLTT+GTHEGLVPL KEGPVHDVQWSYSGSEFAVVYGFMPA AT+F+KKC P++EL
Sbjct: 252 SKLNYLTTNGTHEGLVPLSKEGPVHDVQWSYSGSEFAVVYGFMPAKATVFDKKCNPLVEL 311

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G+GPYNT+RWNPKGKFLCLAGFGNLPGDMAFWDY + KQLGTTRAE SVTSEWSPDG YF
Sbjct: 312 GTGPYNTIRWNPKGKFLCLAGFGNLPGDMAFWDYKEKKQLGTTRAEWSVTSEWSPDGCYF 371

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFH NGSL+FK MFDKL+QA+WKP SPD+FG+I+EL +S+ SLK
Sbjct: 372 MTATTAPRLQVDNGIKIFHPNGSLYFKTMFDKLYQADWKPESPDRFGEIAELAQSIDSLK 431

Query: 242 VAETKSQGSGS----ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMS 295
           V ETK QG GS    A  KA  +NP   KPAAYRPPHAK AAAIQ +L G S T EMS
Sbjct: 432 VGETKQQGQGSKSSVAPNKATSANPPTQKPAAYRPPHAKTAAAIQTKLFGGSSTEEMS 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500094|ref|XP_003518869.1| PREDICTED: eukaryotic translation initiation factor 2A-like [Glycine max]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/323 (75%), Positives = 274/323 (84%), Gaps = 5/323 (1%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PASVQI+ACG   QSQP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGE
Sbjct: 195 GVPASVQIFACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGE 254

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           SKL YLTTDG HEGLVPLRK+GP+HD QWSYSG EFAVVYGFMPA AT+F+KKC P+LEL
Sbjct: 255 SKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLEL 314

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G+GPYNT+RWNPKGKFLCLAGFGNLPGDM FWDY+D KQLG T+AE SVTSEWSPDG YF
Sbjct: 315 GTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYF 374

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFH+NGSL+FKKMFDKL+Q +WKP SP KFGDI+ELIKS+  ++
Sbjct: 375 MTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQVDWKPESPGKFGDIAELIKSLNLVQ 434

Query: 242 VAETKSQGSG-----SASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSK 296
           + + K  G G       S KA+ +NPT  KPAAYRPPHAK A+AIQAEL GE+    +SK
Sbjct: 435 LEDKKPSGQGPPKSTQTSTKASSANPTTQKPAAYRPPHAKNASAIQAELFGETTAETLSK 494

Query: 297 NALRNKKKREKQKEKKAAEAAAA 319
           NALRNKKKREKQKEKKAA  A++
Sbjct: 495 NALRNKKKREKQKEKKAASDASS 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121796|ref|XP_002330655.1| predicted protein [Populus trichocarpa] gi|222872259|gb|EEF09390.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/284 (84%), Positives = 263/284 (92%), Gaps = 4/284 (1%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           G PASVQI+ACGK++QSQP+ARRSFFRC TVQL WNRGSTGLLAVAQSDVDKTNQSYYGE
Sbjct: 195 GVPASVQIFACGKEMQSQPVARRSFFRCDTVQLKWNRGSTGLLAVAQSDVDKTNQSYYGE 254

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           SKLNYLTT+G+HEGLVPLRKEGP+HDVQWS SGSEFAVVYGFMPASAT+F+KKC P+LEL
Sbjct: 255 SKLNYLTTNGSHEGLVPLRKEGPIHDVQWSCSGSEFAVVYGFMPASATLFDKKCHPLLEL 314

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G+GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD KQ+GTT+AE SVTSEWSPDG YF
Sbjct: 315 GTGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDKKQIGTTKAEWSVTSEWSPDGCYF 374

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           MTATTAPRLQ+DNGIKIFHHNGSL+FKKMFDKL++ EWKP SPD+FG+I+ELIKSV SLK
Sbjct: 375 MTATTAPRLQVDNGIKIFHHNGSLYFKKMFDKLYEVEWKPESPDRFGEIAELIKSVDSLK 434

Query: 242 VAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAEL 285
           V ETKSQG G+AS+K AP    A KPAAYRPP AK AAA+QAE+
Sbjct: 435 VTETKSQGQGAASKKTAP----AQKPAAYRPPQAKAAAAVQAEV 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410291|ref|NP_565058.1| eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana] gi|12324325|gb|AAG52134.1|AC010556_16 unknown protein; 49372-46275 [Arabidopsis thaliana] gi|15810527|gb|AAL07151.1| unknown protein [Arabidopsis thaliana] gi|20259061|gb|AAM14246.1| unknown protein [Arabidopsis thaliana] gi|332197304|gb|AEE35425.1| eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/298 (76%), Positives = 262/298 (87%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           GSP SVQI+ CG++LQSQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE
Sbjct: 192 GSPGSVQIFGCGEELQSQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGE 251

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           +KL+YLT DGTHEGLVPLRKEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++EL
Sbjct: 252 TKLHYLTIDGTHEGLVPLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMEL 311

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G GPYNT+RWNPKG+ LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF
Sbjct: 312 GEGPYNTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYF 371

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           +TA+TAPR QIDNG+KIF+++G  ++KKMF++L+QAEWKP SP++FGDISELIKSV SLK
Sbjct: 372 LTASTAPRRQIDNGMKIFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLK 431

Query: 242 VAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 299
           + E KSQG GSA +K    NP A KPAAYRPPHAK AAA+QAELLG S T EMSKNAL
Sbjct: 432 LGEGKSQGQGSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNAL 489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839187|ref|XP_002887475.1| hypothetical protein ARALYDRAFT_476449 [Arabidopsis lyrata subsp. lyrata] gi|297333316|gb|EFH63734.1| hypothetical protein ARALYDRAFT_476449 [Arabidopsis lyrata subsp. lyrata]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/298 (76%), Positives = 261/298 (87%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
           GSP SVQI+ CG++LQSQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE
Sbjct: 192 GSPGSVQIFGCGEELQSQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGE 251

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           +KL+YLT DGTHEGLVPL KEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++E+
Sbjct: 252 TKLHYLTIDGTHEGLVPLGKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMEI 311

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
           G GPYNT+RWNPKG+ LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF
Sbjct: 312 GEGPYNTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYF 371

Query: 182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
           +TA+TAPR QIDNG+KIF+++G  +FKKMF++L+QAEWKP SPD+FGDISELIKSV SLK
Sbjct: 372 LTASTAPRRQIDNGMKIFNYDGKRYFKKMFERLYQAEWKPESPDRFGDISELIKSVESLK 431

Query: 242 VAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 299
           + E KSQG GSA +KA   NP A KPAAYRPPHAK AAA+QAELLG S   EMSKNAL
Sbjct: 432 LGEGKSQGQGSAQKKAIAPNPIAQKPAAYRPPHAKHAAAVQAELLGVSTAGEMSKNAL 489

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2197284	513	AT1G73180 "AT1G73180" [Arabido	0.934	0.584	0.763	1.7e-128
RGD|1589591	486	Eif2a "eukaryotic translation	0.676	0.446	0.446	1.6e-53
CGD|CAL0006012	648	orf19.2930 [Candida albicans (	0.906	0.449	0.399	4.4e-52
UNIPROTKB|G4NE13	705	MGG_00847 "Eukaryotic translat	0.819	0.373	0.380	2.2e-50
FB|FBgn0037135	638	CG7414 [Drosophila melanogaste	0.797	0.401	0.388	4.6e-50
UNIPROTKB|F1SJN5	492	EIF2A "Uncharacterized protein	0.897	0.585	0.390	5.8e-50
UNIPROTKB|F1PGT8	585	EIF2A "Uncharacterized protein	0.875	0.480	0.399	9.5e-50
UNIPROTKB|F1NA55	579	EIF2A "Eukaryotic translation	0.906	0.502	0.386	1.5e-49
UNIPROTKB|F1NE06	587	EIF2A "Eukaryotic translation	0.906	0.495	0.386	1.5e-49
UNIPROTKB|Q5ZKC1	586	EIF2A "Eukaryotic translation	0.906	0.496	0.386	1.5e-49

TAIR|locus:2197284 AT1G73180 "AT1G73180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 229/300 (76%), Positives = 264/300 (88%)

Query:     2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
             GSP SVQI+ CG++LQSQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE
Sbjct:   192 GSPGSVQIFGCGEELQSQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGE 251

Query:    62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
             +KL+YLT DGTHEGLVPLRKEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++EL
Sbjct:   252 TKLHYLTIDGTHEGLVPLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMEL 311

Query:   122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
             G GPYNT+RWNPKG+ LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF
Sbjct:   312 GEGPYNTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYF 371

Query:   182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLK 241
             +TA+TAPR QIDNG+KIF+++G  ++KKMF++L+QAEWKP SP++FGDISELIKSV SLK
Sbjct:   372 LTASTAPRRQIDNGMKIFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLK 431

Query:   242 VAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRN 301
             + E KSQG GSA +K    NP A KPAAYRPPHAK AAA+QAELLG S T EMSKNAL+N
Sbjct:   432 LGEGKSQGQGSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNALKN 491

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

RGD|1589591 Eif2a "eukaryotic translation initiation factor 2A" [Rattus norvegicus (taxid:10116)]

 Score = 521 (188.5 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 101/226 (44%), Positives = 141/226 (62%)

Query:     2 GSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
             G+P+ V++Y        Q  LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYG
Sbjct:    98 GAPSFVRLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYG 157

Query:    61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
             E  L+Y+ T+G    +V L K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ +
Sbjct:   158 EQTLHYIATNG-ESAVVQLPKNGPIYDVAWNPSSTEFCAVYGFMPAKATVFNLKCDPVFD 216

Query:   121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
              G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct:   217 FGTGPRNAAFYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 276

Query:   181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKP 221
              +TAT APRL+++NG KI+H+ GSL +K  +D     +L+Q  W+P
Sbjct:   277 ILTATCAPRLRVNNGYKIWHYTGSLLYK--YDVPSNGELWQVSWQP 320

GO:0000049 "tRNA binding" evidence=ISO

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISO

GO:0006412 "translation" evidence=ISO

GO:0006417 "regulation of translation" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0009967 "positive regulation of signal transduction" evidence=ISO

GO:0032933 "SREBP signaling pathway" evidence=ISO

GO:0042255 "ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

CGD|CAL0006012 orf19.2930 [Candida albicans (taxid:5476)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 121/303 (39%), Positives = 173/303 (57%)

Query:     2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
             G PA+V IY       +QP+  ++FF+    QL WN   T LLA+A +D D TN+SYYGE
Sbjct:   201 GKPANVSIYNIPNF--NQPICFKNFFKAEKCQLKWNSLGTALLALASTDHDTTNKSYYGE 258

Query:    62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
             + L  L   G+++  + L++EGP+HD+ WS +  EFAV YG+MP+  T F+ +   I  L
Sbjct:   259 TNLYLLGIAGSYDSRIDLKREGPIHDITWSPTAREFAVSYGYMPSETTFFDSRGNAIHSL 318

Query:   122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS--EWSPDGR 179
              + P NT+ ++P  KF+ +AGFGNL G +  +D    K       E S TS  EWSP GR
Sbjct:   319 PTAPRNTILYSPHAKFVLVAGFGNLQGTVDVYDR-QNKFSKVVTFEASNTSVCEWSPCGR 377

Query:   180 YFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGS 239
             + +TATT+PRL++DNG KI+H +G L + K F +LF   WKP   D F  I  L  +  +
Sbjct:   378 FILTATTSPRLRVDNGCKIWHASGKLIYLKEFPELFSIGWKPQPLDCFPPIRNLEPAPEA 437

Query:   240 LKVAETKSQGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESPTPEMSKNA 298
              +   TK        ++ A ++  A KPA AYRPPHA+   A     +  S   +  +N 
Sbjct:   438 HE--STKEY----LEKRQALASAAAKKPAGAYRPPHARGGGAGSGSGVASSLYQKELQNN 491

Query:   299 LRN 301
             LR+
Sbjct:   492 LRS 494

GO:0005840 "ribosome" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|G4NE13 MGG_00847 "Eukaryotic translation initiation factor 2A" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 105/276 (38%), Positives = 170/276 (61%)

Query:     2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
             G PA+V+++   +   + P+++++FF+   VQL WN   + ++ +AQ+DVDK+N+SYYGE
Sbjct:   196 GQPAAVKVFNVPQF--TAPVSQKTFFKGDKVQLKWNALGSAIIVLAQTDVDKSNKSYYGE 253

Query:    62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
             + L  L+ +G+ +  + L KEGP+HDV WS +  EF V+YGF+PA  TIFN++       
Sbjct:   254 TTLYLLSVNGSFDARISLDKEGPIHDVAWSPNSKEFGVIYGFIPAKITIFNQRAVATHSF 313

Query:   122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAECSVTSEWSPDGRY 180
              SGP NT+ ++P G+F+ +AGFGNL G +  +D   D +++ T  +      +WSPD RY
Sbjct:   314 PSGPRNTIIFSPTGRFVLVAGFGNLAGQIDVYDLERDYRKICTIESGSPSVCQWSPDSRY 373

Query:   181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSL 240
              MTATT+PRL++DNG+K++H  G+L + +   +L+   W+PV P+      + ++ +   
Sbjct:   374 IMTATTSPRLRVDNGVKLWHVTGTLMYNEDMVELYNVLWRPVLPEH-APTGDALQPMP-- 430

Query:   241 KVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAK 276
               A   S  +  ++ K  PS P      AYRPP A+
Sbjct:   431 --APHASAATYMSTVKT-PSKPAG----AYRPPGAR 459

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0037135 CG7414 [Drosophila melanogaster (taxid:7227)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 108/278 (38%), Positives = 162/278 (58%)

Query:     2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
             G+P+  ++Y      Q+Q +A +SFF+   V++ WN+  +GLL +  ++VDK+  SYYG 
Sbjct:   210 GAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSGLLLLTSTEVDKSGASYYGN 269

Query:    62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
               ++++ T G     VPL KEGPVH V+WS   +EF VVYGFMP+ A ++N KC  + + 
Sbjct:   270 QAVHFMATKGDTCS-VPLSKEGPVHCVKWSPKATEFVVVYGFMPSKAALYNLKCDVVFDF 328

Query:   122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYF 181
             G GP N   +NP G  + LAGFGNLPG +  WD    ++L   +   +   EW P+G +F
Sbjct:   329 GEGPRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWF 388

Query:   182 MTATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSVG 238
             +TATTAPRL+I NG K++H++G+L  + M+    +L   EW+     +F D     K+  
Sbjct:   389 VTATTAPRLRISNGFKVYHYSGALLHETMWPQGQELLGIEWQ-----QFAD-----KTFS 438

Query:   239 SLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAK 276
               K+ + K +G  S       S P A+K A Y PPH +
Sbjct:   439 EPKITKAKHEGIKS-------SQPEASKKA-YTPPHLR 468

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0000049 "tRNA binding" evidence=ISS

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0006417 "regulation of translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|F1SJN5 EIF2A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 120/307 (39%), Positives = 169/307 (55%)

Query:     2 GSPASVQIYACGK-DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
             G+P+ V++Y     D     LA +SFF+   V + WN+ +T +L +A ++VDKT  SYYG
Sbjct:   162 GAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYG 221

Query:    61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
             E  L+Y+ T+G    +V L K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ +
Sbjct:   222 EQTLHYIATNG-ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFD 280

Query:   121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
              G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct:   281 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 340

Query:   181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIK 235
              +TAT APRL+++NG KI+H+ GS+  K  +D     +L+Q  W+P     F + S   +
Sbjct:   341 ILTATCAPRLRVNNGYKIWHYTGSVLHK--YDVPSNAELWQVSWQPFLDGIFPEKSITYQ 398

Query:   236 SVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLG-ESPTPEM 294
             +V S   +E     +  A R  A  N    KP      H ++         G E P   +
Sbjct:   399 AVPSDVPSEEPKVAT--AYRPPALRN----KPVTNSKLHEEEPPQNMKPQPGNEKP---L 449

Query:   295 SKNALRN 301
             SK AL+N
Sbjct:   450 SKTALKN 456

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|F1PGT8 EIF2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 119/298 (39%), Positives = 158/298 (53%)

Query:     2 GSPASVQIYACGK-DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
             G+P+ V++Y     D     LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYG
Sbjct:   193 GAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYG 252

Query:    61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
             E  L+Y+  +G    +V L K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ +
Sbjct:   253 EQTLHYIAANG-ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFD 311

Query:   121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
              G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct:   312 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 371

Query:   181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSL 240
              +TAT APRL+++NG KI+H+ GS+  K  +D    AE   VS   F D        G  
Sbjct:   372 ILTATCAPRLRVNNGYKIWHYTGSVLHK--YDMPSNAELWQVSWQPFLD--------GIF 421

Query:   241 KVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNA 298
              V     Q   S      P    AT   AYRPP  +      ++L  E P   M   A
Sbjct:   422 PVKTITYQAVPSDVPSEEPK--VAT---AYRPPALRNKPITNSKLHEEEPPQNMKPQA 474

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|F1NA55 EIF2A "Eukaryotic translation initiation factor 2A" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 118/305 (38%), Positives = 164/305 (53%)

Query:     2 GSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
             G+P+ V++Y        Q  LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYG
Sbjct:   186 GAPSFVRLYQYPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYG 245

Query:    61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
             E  L+Y+ T+G    +V L K GP++DV W+ +  EF  VYGFMPA AT+FN KC P+ +
Sbjct:   246 EQTLHYIATNG-ESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFD 304

Query:   121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
              G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct:   305 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 364

Query:   181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSV 237
              +TAT APRL++ NG KI+H+ GS+         ++++Q  W+P     F   +   ++V
Sbjct:   365 IVTATCAPRLRVSNGYKIWHYTGSVLHNYEVPSNEEMWQVSWQPFLDGVFPVKAVKYQAV 424

Query:   238 GS-LKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSK 296
              S L  AE K      A R  A  N    KP      H  +         G S  P +SK
Sbjct:   425 PSELPSAEPKP---AQAYRPPALRN----KPVTSSKLHEDEPPQNMKPQSGSSEKP-LSK 476

Query:   297 NALRN 301
              AL+N
Sbjct:   477 TALKN 481

GO:0000049 "tRNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|F1NE06 EIF2A "Eukaryotic translation initiation factor 2A" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 118/305 (38%), Positives = 164/305 (53%)

Query:     2 GSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
             G+P+ V++Y        Q  LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYG
Sbjct:   194 GAPSFVRLYQYPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYG 253

Query:    61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
             E  L+Y+ T+G    +V L K GP++DV W+ +  EF  VYGFMPA AT+FN KC P+ +
Sbjct:   254 EQTLHYIATNG-ESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFD 312

Query:   121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
              G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct:   313 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 372

Query:   181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSV 237
              +TAT APRL++ NG KI+H+ GS+         ++++Q  W+P     F   +   ++V
Sbjct:   373 IVTATCAPRLRVSNGYKIWHYTGSVLHNYEVPSNEEMWQVSWQPFLDGVFPVKAVKYQAV 432

Query:   238 GS-LKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSK 296
              S L  AE K      A R  A  N    KP      H  +         G S  P +SK
Sbjct:   433 PSELPSAEPKP---AQAYRPPALRN----KPVTSSKLHEDEPPQNMKPQSGSSEKP-LSK 484

Query:   297 NALRN 301
              AL+N
Sbjct:   485 TALKN 489

GO:0000049 "tRNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|Q5ZKC1 EIF2A "Eukaryotic translation initiation factor 2A" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 118/305 (38%), Positives = 164/305 (53%)

Query:     2 GSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG 60
             G+P+ V++Y        Q  LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYG
Sbjct:   193 GAPSFVRLYQYPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYG 252

Query:    61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE 120
             E  L+Y+ T+G    +V L K GP++DV W+ +  EF  VYGFMPA AT+FN KC P+ +
Sbjct:   253 EQTLHYIATNG-ESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFD 311

Query:   121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180
              G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG +
Sbjct:   312 FGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEH 371

Query:   181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSV 237
              +TAT APRL++ NG KI+H+ GS+         ++++Q  W+P     F   +   ++V
Sbjct:   372 IVTATCAPRLRVSNGYKIWHYTGSVLHNYEVPSNEEMWQVSWQPFLDGVFPVKAVKYQAV 431

Query:   238 GS-LKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSK 296
              S L  AE K      A R  A  N    KP      H  +         G S  P +SK
Sbjct:   432 PSELPSAEPKP---AQAYRPPALRN----KPVTSSKLHEDEPPQNMKPQSGSSEKP-LSK 483

Query:   297 NALRN 301
              AL+N
Sbjct:   484 TALKN 488

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

GO:0006417 "regulation of translation" evidence=ISS

GO:0000049 "tRNA binding" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034658001 SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (467 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	1e-101
COG5354	561	COG5354, COG5354, Uncharacterized protein, contain	8e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score =  294 bits (756), Expect = e-101
 Identities = 97/194 (50%), Positives = 132/194 (68%)

Query: 24  RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83
           +SFF+   V++ WN+  T LL +  +DVDKTN+SYYGE  L  +   G  + +V L KEG
Sbjct: 1   KSFFKADKVKMKWNKNGTYLLVLVSTDVDKTNKSYYGEFNLYLIGETGGPDEVVELDKEG 60

Query: 84  PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGF 143
           P+HD  WS +G EFAV+YG+MPA  T F+ K   I  LG  P NT+ W+P G+ + LAGF
Sbjct: 61  PIHDFAWSPNGKEFAVIYGYMPAKITFFDLKGNVIHSLGEQPRNTIFWSPFGRLVLLAGF 120

Query: 144 GNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203
           GNL G + FWD  + K++ T  A  +   EWSPDGRYF+TATT+PRL++DNG KI+H++G
Sbjct: 121 GNLAGQIEFWDVKNKKKIATAEASNATDCEWSPDGRYFLTATTSPRLRVDNGFKIWHYSG 180

Query: 204 SLFFKKMFDKLFQA 217
            L +K  FD+L+Q 
Sbjct: 181 KLVYKYDFDELYQV 194

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

 Score =  151 bits (384), Expect = 8e-42
 Identities = 80/320 (25%), Positives = 124/320 (38%), Gaps = 34/320 (10%)

Query: 2   GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 61
             PA V+I +  K   +  L  ++ F+ S VQL W      LL +  +   K+N+SY+GE
Sbjct: 199 NKPAMVRILSIPK---NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKSYFGE 254

Query: 62  SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 121
           S L  L         V    + PVHD  W    S FAV+ G+MPAS ++F+ +       
Sbjct: 255 SNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF 313

Query: 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS--EWSPDGR 179
                NT+ ++P  +++  AGF NL G++  +D   G+           TS  +WSPDG+
Sbjct: 314 PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFD-PAGRFKVAGAFNGLNTSYCDWSPDGQ 372

Query: 180 YFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGS 239
           ++ T TT+ +L++DN IK++   G+  F     +L    W P                  
Sbjct: 373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF-----ELTNITWDPSGQY-------------- 413

Query: 240 LKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAK-QAAAIQAELLGESPTPEMSKNA 298
                  +  S     K            A  P  A+             S     S   
Sbjct: 414 ------VTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTIESAKK 467

Query: 299 LRNKKKREKQKEKKAAEAAA 318
                +      +KA    A
Sbjct: 468 YVKPSRHRFVPFEKAVIMEA 487

Length = 561

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 82  EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG---PYNTVRWNPKGKFL 138
            G V+ V +S  G +          +  +++      L    G     N+V ++P G  L
Sbjct: 177 TGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 139 CLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGI 196
                    G +  WD   G+ + T      SVTS  WSPDG+   + +       D  I
Sbjct: 235 ASGSED---GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA------DGTI 285

Query: 197 KIF 199
           +I+
Sbjct: 286 RIW 288

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
KOG2315	566	consensus Predicted translation initiation factor	100.0
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	100.0
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	100.0
KOG2314	698	consensus Translation initiation factor 3, subunit	99.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.9
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.88
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.85
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.84
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.83
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.82
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.81
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.81
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.8
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.8
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.8
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.8
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.79
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.79
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.79
KOG0266	456	consensus WD40 repeat-containing protein [General	99.78
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.77
KOG0266	456	consensus WD40 repeat-containing protein [General	99.77
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.77
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.76
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.75
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.75
KOG0645	312	consensus WD40 repeat protein [General function pr	99.73
KOG0286	343	consensus G-protein beta subunit [General function	99.73
KOG1274	933	consensus WD40 repeat protein [General function pr	99.72
PTZ00420	568	coronin; Provisional	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.7
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.7
PTZ00421	493	coronin; Provisional	99.7
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.69
KOG0645	312	consensus WD40 repeat protein [General function pr	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.67
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.67
PTZ00421	493	coronin; Provisional	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.66
PLN00181	793	protein SPA1-RELATED; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.65
PTZ00420	568	coronin; Provisional	99.65
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.65
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.64
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.64
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.64
KOG0286	343	consensus G-protein beta subunit [General function	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.63
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
PLN00181	793	protein SPA1-RELATED; Provisional	99.61
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.61
KOG0289	506	consensus mRNA splicing factor [General function p	99.61
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.6
PRK01029	428	tolB translocation protein TolB; Provisional	99.6
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.6
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.6
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.59
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.59
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.59
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.58
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.58
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.58
PRK01029	428	tolB translocation protein TolB; Provisional	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG0296	399	consensus Angio-associated migratory cell protein	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.57
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.54
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.54
KOG0289	506	consensus mRNA splicing factor [General function p	99.54
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.54
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
KOG0643	327	consensus Translation initiation factor 3, subunit	99.53
KOG0296	399	consensus Angio-associated migratory cell protein	99.53
PRK04043	419	tolB translocation protein TolB; Provisional	99.52
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.52
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.51
PRK04043	419	tolB translocation protein TolB; Provisional	99.51
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.51
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.5
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.5
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.5
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.49
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.49
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.48
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.48
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.48
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.48
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.47
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.47
KOG2055	514	consensus WD40 repeat protein [General function pr	99.47
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.47
KOG0639	705	consensus Transducin-like enhancer of split protei	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.46
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.45
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.43
PRK11028	330	6-phosphogluconolactonase; Provisional	99.43
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.43
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.42
KOG0639	705	consensus Transducin-like enhancer of split protei	99.42
KOG1274	933	consensus WD40 repeat protein [General function pr	99.41
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.4
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.39
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.39
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.38
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.38
KOG2096	420	consensus WD40 repeat protein [General function pr	99.37
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.36
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.36
KOG0641	350	consensus WD40 repeat protein [General function pr	99.36
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.35
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.33
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.33
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.32
KOG1273	405	consensus WD40 repeat protein [General function pr	99.31
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.31
KOG0267	825	consensus Microtubule severing protein katanin p80	99.31
KOG2096	420	consensus WD40 repeat protein [General function pr	99.31
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.3
KOG1539	910	consensus WD repeat protein [General function pred	99.3
KOG0643	327	consensus Translation initiation factor 3, subunit	99.3
KOG0267	825	consensus Microtubule severing protein katanin p80	99.3
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.29
PRK11028	330	6-phosphogluconolactonase; Provisional	99.29
KOG1539	910	consensus WD repeat protein [General function pred	99.29
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.29
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.28
KOG1273	405	consensus WD40 repeat protein [General function pr	99.28
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.26
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.26
KOG2315	566	consensus Predicted translation initiation factor	99.26
KOG2139	445	consensus WD40 repeat protein [General function pr	99.25
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.25
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.25
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.25
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.25
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.25
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.24
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.23
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.22
KOG2055	514	consensus WD40 repeat protein [General function pr	99.22
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.22
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.22
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.22
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.21
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.19
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.18
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.16
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.16
KOG0641	350	consensus WD40 repeat protein [General function pr	99.15
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.15
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.14
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.13
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.13
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.12
KOG2139	445	consensus WD40 repeat protein [General function pr	99.12
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.11
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.11
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.1
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.1
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.09
KOG0646	476	consensus WD40 repeat protein [General function pr	99.09
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.08
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.07
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.07
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.06
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.06
KOG4328	498	consensus WD40 protein [Function unknown]	99.06
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.06
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.05
COG2319	466	FOG: WD40 repeat [General function prediction only	99.05
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.04
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.03
KOG0646	476	consensus WD40 repeat protein [General function pr	99.03
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.01
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.0
KOG2048	691	consensus WD40 repeat protein [General function pr	99.0
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.98
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.96
KOG2314	698	consensus Translation initiation factor 3, subunit	98.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.95
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.93
KOG2048	691	consensus WD40 repeat protein [General function pr	98.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.91
COG2319	466	FOG: WD40 repeat [General function prediction only	98.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.9
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.88
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.88
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.84
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.84
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.83
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.81
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.8
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.79
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.78
KOG1963	792	consensus WD40 repeat protein [General function pr	98.76
KOG4328	498	consensus WD40 protein [Function unknown]	98.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.74
KOG4547	541	consensus WD40 repeat-containing protein [General	98.73
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.71
KOG1188	376	consensus WD40 repeat protein [General function pr	98.69
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.68
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.64
KOG4227	609	consensus WD40 repeat protein [General function pr	98.64
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.58
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.57
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.55
KOG0649	325	consensus WD40 repeat protein [General function pr	98.54
KOG2321	703	consensus WD40 repeat protein [General function pr	98.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.48
KOG2321	703	consensus WD40 repeat protein [General function pr	98.45
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.44
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.44
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.42
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.4
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.39
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.36
KOG1963	792	consensus WD40 repeat protein [General function pr	98.34
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.32
KOG0649	325	consensus WD40 repeat protein [General function pr	98.29
KOG1310	758	consensus WD40 repeat protein [General function pr	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.22
COG4946	668	Uncharacterized protein related to the periplasmic	98.21
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.19
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.18
KOG1188	376	consensus WD40 repeat protein [General function pr	98.16
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.16
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.16
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.1
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.08
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.02
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.99
KOG4547	541	consensus WD40 repeat-containing protein [General	97.97
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.97
KOG2695	425	consensus WD40 repeat protein [General function pr	97.96
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.94
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.94
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.94
PRK13616	591	lipoprotein LpqB; Provisional	97.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.88
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.87
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.83
KOG4227	609	consensus WD40 repeat protein [General function pr	97.77
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.74
PRK02888	635	nitrous-oxide reductase; Validated	97.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	97.7
PRK13616	591	lipoprotein LpqB; Provisional	97.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.67
KOG1310	758	consensus WD40 repeat protein [General function pr	97.65
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.62
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.55
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.51
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.49
PRK02888	635	nitrous-oxide reductase; Validated	97.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.39
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.33
COG3391	381	Uncharacterized conserved protein [Function unknow	97.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.25
COG3391	381	Uncharacterized conserved protein [Function unknow	97.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.13
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.12
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.11
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.02
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.01
PRK10115	686	protease 2; Provisional	96.99
KOG2695	425	consensus WD40 repeat protein [General function pr	96.92
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.9
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.9
KOG4714	319	consensus Nucleoporin [Nuclear structure]	96.88
KOG1334	559	consensus WD40 repeat protein [General function pr	96.81
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	96.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.65
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.6
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.6
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.46
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.46
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.44
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.41
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.38
KOG1334	559	consensus WD40 repeat protein [General function pr	96.37
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.35
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.29
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.24
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.19
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.17
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.14
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.11
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.11
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.06
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.94
PRK10115	686	protease 2; Provisional	95.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.78
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.66
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.64
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.6
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.54
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.41
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.39
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	95.36
KOG3621	726	consensus WD40 repeat-containing protein [General	95.01
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	94.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.91
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	94.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.52
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	94.42
KOG2395	644	consensus Protein involved in vacuole import and d	94.38
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	94.37
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.14
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.94
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.86
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	93.81
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.75
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	93.65
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.09
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.07
KOG3621	726	consensus WD40 repeat-containing protein [General	93.01
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.98
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	92.98
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.86
KOG1409	404	consensus Uncharacterized conserved protein, conta	92.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.74
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.7
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	92.69
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	92.59
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.29
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.13
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.8
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.61
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.32
PRK13684	334	Ycf48-like protein; Provisional	90.9
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.84
KOG2247	615	consensus WD40 repeat-containing protein [General	90.78
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.53
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	90.42
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	90.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.57
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.35
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.2
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	89.02
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.93
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.71
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.58
KOG2247	615	consensus WD40 repeat-containing protein [General	88.58
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	88.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	87.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.74
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	87.6
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	87.1
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.01
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.64
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.0
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.79
KOG1230	521	consensus Protein containing repeated kelch motifs	85.79
KOG1008	783	consensus Uncharacterized conserved protein, conta	85.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.3
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.02
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	84.36
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	84.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	84.05
COG5167	776	VID27 Protein involved in vacuole import and degra	83.53
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	83.24
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	83.06
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.21
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	81.8
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	81.01
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.63
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	80.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	80.1
PF13449	326	Phytase-like: Esterase-like activity of phytase	80.09

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-61  Score=450.22  Aligned_cols=227  Identities=55%  Similarity=0.962  Sum_probs=218.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |+|++||||.+|.....+++++++||++|.++|.||+.|+.||+++++|+|++|++|||++.||++..+|. ++.|++.+
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L~k  269 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPLLK  269 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEEecCC
Confidence            89999999999965458899999999999999999999999999999999999999999999999999965 89999999


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      +|||||+.|+|+|++|++|||+||.+++|||++|++++.|+.+++|++.|||+|++|+++||||+.|.|.|||+.+.++|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccC-ceEEEEEecCCCCCCCC
Q 020756          162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~-~~~~~~w~P~~~~~~~~  229 (321)
                      ..+...+.+.++|||||+||+|++++||||+||+++||||+|.+++..++. +++++.|+|....++..
T Consensus       350 ~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~~~~~~~~  418 (566)
T KOG2315|consen  350 AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPFNDKTGNE  418 (566)
T ss_pred             cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeeeecCCcccch
Confidence            999999999999999999999999999999999999999999999999888 79999999988876664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=100.00  E-value=2e-42  Score=298.04  Aligned_cols=194  Identities=47%  Similarity=0.911  Sum_probs=185.1

Q ss_pred             eecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 020756           24 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF  103 (321)
Q Consensus        24 ~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~  103 (321)
                      |+||+++.++|.|+++|++|++.+.+++|+++++|||+..||+++..+.....+.+..+++|++++|+|+|++||+++|.
T Consensus         1 k~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen    1 KNFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             CCccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence            58999999999999999999999999999999999999999999988877888888888899999999999999999999


Q ss_pred             CCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEE
Q 020756          104 MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMT  183 (321)
Q Consensus       104 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t  183 (321)
                      ++..+.|||++++.+.+++...+|++.|||+|++|+++|++|..|.|.|||+++.+++.+.++..++.++|||||+||++
T Consensus        81 ~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   81 MPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             CCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             EEcCCceeecCcEEEEeecCceeEEeccCceEEE
Q 020756          184 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQA  217 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~  217 (321)
                      +++.||+++||+++||+++|+++++...+++++|
T Consensus       161 a~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~~  194 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQV  194 (194)
T ss_pred             EEeccceeccccEEEEEecCeEeEecchhhhhCC
Confidence            9999999999999999999999999888888764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=100.00  E-value=1.3e-40  Score=307.06  Aligned_cols=247  Identities=30%  Similarity=0.510  Sum_probs=216.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |+|++|+||.||.   +..+.+++||+++.|+++|++.|++||+++.++. +++++|||+.+||++.+.+. ...+.++.
T Consensus       199 ~kpa~~~i~sIp~---~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~e~-~i~V~~~~  273 (561)
T COG5354         199 NKPAMVRILSIPK---NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITER-SIPVEKDL  273 (561)
T ss_pred             CCCcEEEEEEccC---CCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccceeccceEEEEeeccc-ccceeccc
Confidence            7999999999997   8999999999999999999999999999999988 99999999999999998754 66777677


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQ  160 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~  160 (321)
                      +++|+++.|+|+++.|++|+|.||..+.+||++++.++.+..+..|++.|||.+++++++||+|+.|+|.+||.... .+
T Consensus       274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence            89999999999999999999999999999999999889999999999999999999999999999999999998765 56


Q ss_pred             EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCCCcchhhhccccc
Q 020756          161 LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSL  240 (321)
Q Consensus       161 i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~  240 (321)
                      +..+.+.+...+.|||||+|+.++++.+|+|+|+.++|||+.|..++     +++++.|+|..++..+..          
T Consensus       354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----el~~~~W~p~~~~~ttsS----------  418 (561)
T COG5354         354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----ELTNITWDPSGQYVTTSS----------  418 (561)
T ss_pred             EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----hhhhccccCCcccceeec----------
Confidence            66888888899999999999999999999999999999999998887     789999999765554431          


Q ss_pred             ccccccccCCCCccccCCCCCCCCCCCCccCCCCCCCh
Q 020756          241 KVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQA  278 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~pp~~r~~  278 (321)
                      ..+.++..-          .-.....+++|+||++|+.
T Consensus       419 s~~~h~~~~----------~~~~~k~~Ga~~~e~~rg~  446 (561)
T COG5354         419 SCPKHKVEH----------GYKIFKIAGALYPEEARGG  446 (561)
T ss_pred             cCCCCcccc----------ccccccccccccChhhhcc
Confidence            011111110          0113567789999999975

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=5.4e-28  Score=225.39  Aligned_cols=227  Identities=26%  Similarity=0.494  Sum_probs=191.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC--
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~--   80 (321)
                      .|++|.|..+|+   .+.|.++++|+...|.|.|..+|+||++-+    |+..++-. ....+.+++....++.+++.  
T Consensus       371 ~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdyLcvkv----dR~tK~~~-~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  371 IPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDYLCVKV----DRHTKSKV-KGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             CcceEEEEecCc---cceeeeccceeeeccEEEeccCCcEEEEEE----Eeeccccc-cceEeeEEEEEeeccCCCceee
Confidence            699999999999   899999999999999999999999999974    33333311 22356677766667766655  


Q ss_pred             -CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeCCC-----ceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           81 -KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKC-----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        81 -~~~~v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~-----~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                       ..+.|..++|.|.|+.|++++|.... ++.+|.+..     ..+..|....+|++.|||.|+++++++.++..|+++|+
T Consensus       443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence             57899999999999999999887654 788887753     35566778899999999999999999877778999999


Q ss_pred             ECC--CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCCCc-
Q 020756          154 DYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI-  230 (321)
Q Consensus       154 D~~--~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~~~-  230 (321)
                      |+.  +.+.+...++...+.+.|.|.|||++|+++.+|..+|++++||++.|+++.+...+++.++.|||.+|.+++.. 
T Consensus       523 D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~  602 (698)
T KOG2314|consen  523 DTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEK  602 (698)
T ss_pred             ecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHH
Confidence            997  45666767767888999999999999999999999999999999999999999999999999999999999984 


Q ss_pred             -chhhhcc
Q 020756          231 -SELIKSV  237 (321)
Q Consensus       231 -~~~~~~~  237 (321)
                       +.+.+++
T Consensus       603 ~KkIkKnL  610 (698)
T KOG2314|consen  603 QKKIKKNL  610 (698)
T ss_pred             HHHHHHHH
Confidence             4555554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2.5e-23  Score=188.90  Aligned_cols=202  Identities=19%  Similarity=0.235  Sum_probs=170.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +.++.|+||++.+   ..++....-+-+.+..+.|+|+|++|...+   .|.+-.       ||  ++....+-..+-.|
T Consensus       238 s~Dgtvklw~~~~---e~~l~~l~gH~~RVs~VafHPsG~~L~Tas---fD~tWR-------lW--D~~tk~ElL~QEGH  302 (459)
T KOG0272|consen  238 SADGTVKLWKLSQ---ETPLQDLEGHLARVSRVAFHPSGKFLGTAS---FDSTWR-------LW--DLETKSELLLQEGH  302 (459)
T ss_pred             ccCCceeeeccCC---CcchhhhhcchhhheeeeecCCCceeeecc---cccchh-------hc--ccccchhhHhhccc
Confidence            4689999999999   788999998889999999999999998753   344333       33  33344345555578


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|++++|.|||..+++  |.+|...+|||++ +..+..|  |..+|.++.|||+|-.|++++   .|++++|||++..
T Consensus       303 s~~v~~iaf~~DGSL~~t--GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs---~Dnt~kVWDLR~r  377 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAAT--GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS---SDNTCKVWDLRMR  377 (459)
T ss_pred             ccccceeEecCCCceeec--cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC---CCCcEEEeeeccc
Confidence            999999999999998877  7899999999995 4566555  889999999999999999999   8999999999988


Q ss_pred             eEEEeeeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCc-ee--EEeccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +.+.++.+|  -|+.+.|+| .|.+|+|++      +|++++||.-.+- ++  ..+|.+.|.++..+|++..+.+.
T Consensus       378 ~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas------yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  378 SELYTIPAHSNLVSQVKYSPQEGYFLVTAS------YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             ccceecccccchhhheEecccCCeEEEEcc------cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence            889999988  678899999 699999998      6999999998554 44  66899999999999999888875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=3.3e-22  Score=181.63  Aligned_cols=199  Identities=16%  Similarity=0.166  Sum_probs=157.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCC-CeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS-TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G-~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      .|.++||+.|+   .+.+....-+......+.|+|.- ..-++.++.|         |...||-+  ++...-.--..|.
T Consensus       196 sG~~kvW~~~~---~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D---------gtvklw~~--~~e~~l~~l~gH~  261 (459)
T KOG0272|consen  196 SGLVKVWSVPQ---CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD---------GTVKLWKL--SQETPLQDLEGHL  261 (459)
T ss_pred             CCceeEeecCC---cceeEEEeccccceeeEEEccCCCccceeeeccC---------Cceeeecc--CCCcchhhhhcch
Confidence            57899999999   67788888888899999999983 3333333222         44444433  3321111112478


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce---eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~---~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|..++|+|+|++|++.  +-|.+..|||+..+.   .+.-|...+.+++|+|||.+++++|   +|..-.|||+++++
T Consensus       262 ~RVs~VafHPsG~~L~Ta--sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG---lD~~~RvWDlRtgr  336 (459)
T KOG0272|consen  262 ARVSRVAFHPSGKFLGTA--SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG---LDSLGRVWDLRTGR  336 (459)
T ss_pred             hhheeeeecCCCceeeec--ccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC---ccchhheeecccCc
Confidence            899999999999999994  678899999997652   2344889999999999999999999   88899999999999


Q ss_pred             EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE--eccCceEEEEEecCCCCCC
Q 020756          160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK--KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~--~~~~~~~~~~w~P~~~~~~  227 (321)
                      ++-.+.+|  .|..++|||+|-+|||+++      ||+++|||+.++.. +.  .|...|.+|.|.|+....+
T Consensus       337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~------Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFSPNGYHLATGSS------DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             EEEEecccccceeeEeECCCceEEeecCC------CCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence            99999998  8999999999999999995      99999999977643 33  4778999999999554443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.85  E-value=9.4e-20  Score=158.23  Aligned_cols=203  Identities=18%  Similarity=0.227  Sum_probs=159.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-   80 (321)
                      +-++.+|||++..   ++...+...+..++..+.+|+|.+.|+.-.   +|++         |.+++..|.....+.-+ 
T Consensus        82 swD~~lrlWDl~~---g~~t~~f~GH~~dVlsva~s~dn~qivSGS---rDkT---------iklwnt~g~ck~t~~~~~  146 (315)
T KOG0279|consen   82 SWDGTLRLWDLAT---GESTRRFVGHTKDVLSVAFSTDNRQIVSGS---RDKT---------IKLWNTLGVCKYTIHEDS  146 (315)
T ss_pred             cccceEEEEEecC---CcEEEEEEecCCceEEEEecCCCceeecCC---Ccce---------eeeeeecccEEEEEecCC
Confidence            3468899999999   788888888899999999999999886531   3332         45555556422222222 


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      +.+-|.++.|+|+.....++.+..|+++++||+++-.+ ..+  |.+.++.+.+||||.+++++|   .+|.+.+||++.
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg---kdg~~~LwdL~~  223 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG---KDGEAMLWDLNE  223 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC---CCceEEEEEccC
Confidence            26789999999997666666678899999999976544 444  788999999999999999998   999999999999


Q ss_pred             CeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE------ec-----cCceEEEEEecCCC
Q 020756          158 GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK------KM-----FDKLFQAEWKPVSP  224 (321)
Q Consensus       158 ~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~------~~-----~~~~~~~~w~P~~~  224 (321)
                      ++.+.++++. .+..++|+|+--+|+.++       +..|+|||+..+.+ ..      ..     ...+..++|++++.
T Consensus       224 ~k~lysl~a~~~v~sl~fspnrywL~~at-------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~  296 (315)
T KOG0279|consen  224 GKNLYSLEAFDIVNSLCFSPNRYWLCAAT-------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ  296 (315)
T ss_pred             CceeEeccCCCeEeeEEecCCceeEeecc-------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence            9999999887 678899999987777777       88899999965432 11      11     23577899999999


Q ss_pred             CCCCC
Q 020756          225 DKFGD  229 (321)
Q Consensus       225 ~~~~~  229 (321)
                      .+|..
T Consensus       297 tLf~g  301 (315)
T KOG0279|consen  297 TLFAG  301 (315)
T ss_pred             EEEee
Confidence            99976

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.4e-20  Score=164.06  Aligned_cols=202  Identities=19%  Similarity=0.314  Sum_probs=154.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +.++.|+||++-.   ++++...+-+...+.-+.|--  +.+++..+.  |++         +-.+....+.-.+..-.|
T Consensus       224 skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG--~gliySgS~--Drt---------Ikvw~a~dG~~~r~lkGH  287 (480)
T KOG0271|consen  224 SKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQ--DRT---------IKVWRALDGKLCRELKGH  287 (480)
T ss_pred             cCCCCEEEEEccC---ceEEEEeccCccceEEEEEcC--CceEEecCC--Cce---------EEEEEccchhHHHhhccc
Confidence            4689999999998   899999999999999999964  456665332  222         222232222122222234


Q ss_pred             CCCeEEEEEC-----------cCCCE-------------------------EEEEEccCCCeEEEEeC--CCceeEEe--
Q 020756           82 EGPVHDVQWS-----------YSGSE-------------------------FAVVYGFMPASATIFNK--KCRPILEL--  121 (321)
Q Consensus        82 ~~~v~~~~ws-----------P~g~~-------------------------l~~~~g~~~~~i~i~d~--~~~~~~~~--  121 (321)
                      ..-|+.++.|           |.|++                         ++.  |+.|.++.+|+-  ..+++...  
T Consensus       288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS--gsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS--GSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE--ecCCceEEEecccccccchhhhhc
Confidence            4455555444           44444                         554  677889999986  23455554  


Q ss_pred             CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756          122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      |..-||.+.|||||++|++++   .|..|++||.++|+.+.+|.+|  .+++++||.|.|+|++++      .|.++++|
T Consensus       366 Hq~lVn~V~fSPd~r~IASaS---FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S------kDsTLKvw  436 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGRYIASAS---FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS------KDSTLKVW  436 (480)
T ss_pred             hhhheeeEEECCCccEEEEee---cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC------CCceEEEE
Confidence            788999999999999999999   7889999999999999999988  789999999999999999      49999999


Q ss_pred             eecCcee---EEeccCceEEEEEecCCCCCCCCc
Q 020756          200 HHNGSLF---FKKMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       200 ~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      ++..+.+   +.+|.++|+.+.|+|++..+.+..
T Consensus       437 ~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  437 DVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             EeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence            9987776   456889999999999998888764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.83  E-value=1.2e-18  Score=149.39  Aligned_cols=201  Identities=15%  Similarity=0.205  Sum_probs=161.9

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..||||++.+.+ ..|+.+.-.....+..+.|..+|+.++...          -.|...||.+..   ..++-.+.+..+
T Consensus        61 qhvRlyD~~S~n-p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs----------eDgt~kIWdlR~---~~~qR~~~~~sp  126 (311)
T KOG0315|consen   61 QHVRLYDLNSNN-PNPVATFEGHTKNVTAVGFQCDGRWMYTGS----------EDGTVKIWDLRS---LSCQRNYQHNSP  126 (311)
T ss_pred             CeeEEEEccCCC-CCceeEEeccCCceEEEEEeecCeEEEecC----------CCceEEEEeccC---cccchhccCCCC
Confidence            479999999854 347888877777889999999999987641          114444454433   345555678899


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--  158 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--  158 (321)
                      |+++..+|+..+|++  ++..+.|.+||+..+ ....+   ....+.++...|||++|+.+.   ..|+.++|++-+.  
T Consensus       127 Vn~vvlhpnQteLis--~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~  201 (311)
T KOG0315|consen  127 VNTVVLHPNQTELIS--GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQT  201 (311)
T ss_pred             cceEEecCCcceEEe--ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCc
Confidence            999999999999998  578899999999766 33333   457889999999999999987   8899999998754  


Q ss_pred             ----eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc----eeEEeccCceEEEEEecCCCCCCC
Q 020756          159 ----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       159 ----~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~----~l~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                          +.+..+.+|  .+..+.+|||++||+++++      |.+++||+.++-    +..+++...+|+..|+-++.+|++
T Consensus       202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             cccceEhhheecccceEEEEEECCCCcEEEeecC------CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence                456667776  6888999999999999996      999999998654    446778889999999999999998


Q ss_pred             Cc
Q 020756          229 DI  230 (321)
Q Consensus       229 ~~  230 (321)
                      ..
T Consensus       276 as  277 (311)
T KOG0315|consen  276 AS  277 (311)
T ss_pred             cC
Confidence            75

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.82  E-value=2.5e-19  Score=173.64  Aligned_cols=174  Identities=15%  Similarity=0.244  Sum_probs=144.2

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ++++||||.+.+   ...+..-+-+...+..+.|+|.|=|++...   .|++-       .||  ..+.....++...|-
T Consensus       471 ED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYFatas---~D~tA-------rLW--s~d~~~PlRifaghl  535 (707)
T KOG0263|consen  471 EDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYFATAS---HDQTA-------RLW--STDHNKPLRIFAGHL  535 (707)
T ss_pred             CCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEEEecC---CCcee-------eee--ecccCCchhhhcccc
Confidence            578999999999   444444445667788899999999887752   22222       233  344455667777899


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|.++.|+|++.++++  |..|.++++||+ .+..++-|  |.+++.+++|||+|++|++++   .+|.|.+||+.+++
T Consensus       536 sDV~cv~FHPNs~Y~aT--GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~---ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  536 SDVDCVSFHPNSNYVAT--GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD---EDGLIKIWDLANGS  610 (707)
T ss_pred             cccceEEECCccccccc--CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc---cCCcEEEEEcCCCc
Confidence            99999999999999998  788999999998 55666666  899999999999999999999   99999999999999


Q ss_pred             EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .+..+..|  .+.++.||.||..||+++      .|+.|++||+.
T Consensus       611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg------~DnsV~lWD~~  649 (707)
T KOG0263|consen  611 LVKQLKGHTGTIYSLSFSRDGNVLASGG------ADNSVRLWDLT  649 (707)
T ss_pred             chhhhhcccCceeEEEEecCCCEEEecC------CCCeEEEEEch
Confidence            99888877  688899999999999999      59999999984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.81  E-value=3.6e-18  Score=148.44  Aligned_cols=210  Identities=14%  Similarity=0.120  Sum_probs=163.7

Q ss_pred             ceEEEEEcCCcCC--CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            5 ASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~--~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      -.+-+|++.....  +.++....-+.--+.++.-++||++.+..          ++.+.  +.++++.++...+....|.
T Consensus        38 k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~----------swD~~--lrlWDl~~g~~t~~f~GH~  105 (315)
T KOG0279|consen   38 KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA----------SWDGT--LRLWDLATGESTRRFVGHT  105 (315)
T ss_pred             eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec----------cccce--EEEEEecCCcEEEEEEecC
Confidence            3567788876321  22333333344456677889999988763          22233  5556666655566666899


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC----CcCeeeEEEcCC--CCeEEEEccCCCCCcEEEEECC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~----~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ..|.++++|||.++++.  |+.|.+|.+|+..+....+++    ..-|++++|+|.  .-+|+.++   .|++|++||++
T Consensus       106 ~dVlsva~s~dn~qivS--GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s---~DktvKvWnl~  180 (315)
T KOG0279|consen  106 KDVLSVAFSTDNRQIVS--GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS---WDKTVKVWNLR  180 (315)
T ss_pred             CceEEEEecCCCceeec--CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc---CCceEEEEccC
Confidence            99999999999999988  799999999999998888772    567999999998  56888888   99999999999


Q ss_pred             CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee-EEeccCceEEEEEecCCCCCCCCcch
Q 020756          157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF-FKKMFDKLFQAEWKPVSPDKFGDISE  232 (321)
Q Consensus       157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l-~~~~~~~~~~~~w~P~~~~~~~~~~~  232 (321)
                      +.+....+.+|  .++.+++||||...++++      .|+.+.+||+ .|+.+ ...+...|..++|+|....+.+....
T Consensus       181 ~~~l~~~~~gh~~~v~t~~vSpDGslcasGg------kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~  254 (315)
T KOG0279|consen  181 NCQLRTTFIGHSGYVNTVTVSPDGSLCASGG------KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT  254 (315)
T ss_pred             CcchhhccccccccEEEEEECCCCCEEecCC------CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC
Confidence            99888888776  788999999999999988      5999999999 46666 44678899999999999888877554


Q ss_pred             hhhcc
Q 020756          233 LIKSV  237 (321)
Q Consensus       233 ~~~~~  237 (321)
                      .++.|
T Consensus       255 sIkIw  259 (315)
T KOG0279|consen  255 SIKIW  259 (315)
T ss_pred             ceEEE
Confidence            44444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.81  E-value=2.6e-18  Score=158.22  Aligned_cols=200  Identities=18%  Similarity=0.341  Sum_probs=159.2

Q ss_pred             CCCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            1 MGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         1 ~g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      ||.++.+.||+.-.   ++...+..|..+...++.|-.+.......  +|         |...+|.++.++.  ......
T Consensus       294 ~~vD~ttilwd~~~---g~~~q~f~~~s~~~lDVdW~~~~~F~ts~--td---------~~i~V~kv~~~~P--~~t~~G  357 (524)
T KOG0273|consen  294 GGVDGTTILWDAHT---GTVKQQFEFHSAPALDVDWQSNDEFATSS--TD---------GCIHVCKVGEDRP--VKTFIG  357 (524)
T ss_pred             ccCCccEEEEeccC---ceEEEeeeeccCCccceEEecCceEeecC--CC---------ceEEEEEecCCCc--ceeeec
Confidence            68889999999988   78888888888888999998886665432  11         3334555555554  333346


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCC---------CeEEEEccCCCCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKG---------KFLCLAGFGNLPG  148 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG---------~~l~~~g~~n~~g  148 (321)
                      |.++|..+.|+|.|..|+.+  ..|++++||+. .......+  |...+.++.|||+|         ..|+.++   .|+
T Consensus       358 H~g~V~alk~n~tg~LLaS~--SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas---~ds  432 (524)
T KOG0273|consen  358 HHGEVNALKWNPTGSLLASC--SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS---FDS  432 (524)
T ss_pred             ccCceEEEEECCCCceEEEe--cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee---cCC
Confidence            99999999999999999998  45789999997 45566666  78889999999975         4778888   789


Q ss_pred             cEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecCCC
Q 020756          149 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVSP  224 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~~~  224 (321)
                      +|.+||+..+.++.++..|  .++.++|||+|+|+|+++.      |++|+||+.....+++.  ....+..++|+-++.
T Consensus       433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~------dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL------DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGD  506 (524)
T ss_pred             eEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC------CCeeEeccccchheeEeecCCCeEEEEEEcCCCC
Confidence            9999999999999999776  8999999999999999994      99999999965555443  334689999998875


Q ss_pred             CCC
Q 020756          225 DKF  227 (321)
Q Consensus       225 ~~~  227 (321)
                      .+.
T Consensus       507 kl~  509 (524)
T KOG0273|consen  507 KLG  509 (524)
T ss_pred             EEE
Confidence            443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.80  E-value=1.3e-19  Score=164.22  Aligned_cols=201  Identities=14%  Similarity=0.310  Sum_probs=158.2

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      -|.+.||+...+. .+-|-|  .+..-+..|.|+++|++++..     |..|       .|.+++.+-.....+.-.|..
T Consensus       117 SGEFtLWNg~~fn-FEtilQ--aHDs~Vr~m~ws~~g~wmiSg-----D~gG-------~iKyWqpnmnnVk~~~ahh~e  181 (464)
T KOG0284|consen  117 SGEFTLWNGTSFN-FETILQ--AHDSPVRTMKWSHNGTWMISG-----DKGG-------MIKYWQPNMNNVKIIQAHHAE  181 (464)
T ss_pred             cccEEEecCceee-HHHHhh--hhcccceeEEEccCCCEEEEc-----CCCc-------eEEecccchhhhHHhhHhhhh
Confidence            4677788776542 222222  234567799999999998763     2222       245555555544555555678


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      .|.+++|||+...|+.|  ..|++|.|||...   +.+..-|...+.++.|+|.-.+|+++|   .|..|++||.++++|
T Consensus       182 aIRdlafSpnDskF~t~--SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs---kDnlVKlWDprSg~c  256 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTC--SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS---KDNLVKLWDPRSGSC  256 (464)
T ss_pred             hhheeccCCCCceeEEe--cCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc---CCceeEeecCCCcch
Confidence            99999999999999998  5588999999843   234445788899999999999999999   888999999999999


Q ss_pred             EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-C-ce-eEEeccCceEEEEEecCCCCCCCCc
Q 020756          161 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-G-SL-FFKKMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       161 i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g-~~-l~~~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      +.++..|  .|+.+.|+|+|.||++++      .|..++++|+. - ++ .++.|..++.++.|+|-.+.+|+..
T Consensus       257 l~tlh~HKntVl~~~f~~n~N~Llt~s------kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  257 LATLHGHKNTVLAVKFNPNGNWLLTGS------KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             hhhhhhccceEEEEEEcCCCCeeEEcc------CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence            9999887  788999999999999999      59999999996 2 22 2778999999999999999999763

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.80  E-value=1.4e-18  Score=168.54  Aligned_cols=190  Identities=17%  Similarity=0.233  Sum_probs=151.6

Q ss_pred             cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756           26 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        26 ~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      -+...+....|+|+.++|+-++ .  |       +...||.++....  ..+--.|..||-+++|+|.|-+||++  ..|
T Consensus       449 GH~GPVyg~sFsPd~rfLlScS-E--D-------~svRLWsl~t~s~--~V~y~GH~~PVwdV~F~P~GyYFata--s~D  514 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCS-E--D-------SSVRLWSLDTWSC--LVIYKGHLAPVWDVQFAPRGYYFATA--SHD  514 (707)
T ss_pred             cCCCceeeeeecccccceeecc-C--C-------cceeeeeccccee--EEEecCCCcceeeEEecCCceEEEec--CCC
Confidence            3456777889999999887752 1  1       2333444433332  22223688999999999999999996  668


Q ss_pred             CeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCE
Q 020756          106 ASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~  180 (321)
                      ++..+|..+ ..+.+.|  |...+.|+.|+|+..++++++   .|.+|++||+.+|..+..|.+|  .++.++|||+|+|
T Consensus       515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS---sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS---SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY  591 (707)
T ss_pred             ceeeeeecccCCchhhhcccccccceEEECCcccccccCC---CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence            899999884 4455555  789999999999999999998   9999999999999999999998  7999999999999


Q ss_pred             EEEEEcCCceeecCcEEEEeecC-cee--EEeccCceEEEEEecCCCCCCCCc-chhhhccc
Q 020756          181 FMTATTAPRLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPVSPDKFGDI-SELIKSVG  238 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~~~~~~~~~-~~~~~~~~  238 (321)
                      |+++.      .|+.|+|||+.+ .++  +.+|.+.++.++|+.++.-+.... ++....|.
T Consensus       592 LaSg~------ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  592 LASGD------EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             Eeecc------cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            99999      499999999954 555  667888999999999998888763 44444443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=2.1e-18  Score=155.42  Aligned_cols=201  Identities=17%  Similarity=0.323  Sum_probs=151.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK   81 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~   81 (321)
                      -+..||+|++.+   ..++.+-.-++.-+..+.|+|||+.|+.-+.          .|+..  +++...+. ..+-...|
T Consensus       135 GD~TvR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~----------dg~I~--lwdpktg~~~g~~l~gH  199 (480)
T KOG0271|consen  135 GDTTVRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSK----------DGSIR--LWDPKTGQQIGRALRGH  199 (480)
T ss_pred             CCceEEeeccCC---CCcceeecCCccEEEEEEECCCcchhhcccc----------CCeEE--EecCCCCCcccccccCc
Confidence            367899999999   7889888889999999999999999987431          14433  44432221 22222358


Q ss_pred             CCCeEEEEECc-----CCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           82 EGPVHDVQWSY-----SGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        82 ~~~v~~~~wsP-----~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ...|.+++|.|     .+++|+..  ..|+.+.|||+... .+..+  |..+|.|+.|--+| +|.+++   .|++|++|
T Consensus       200 ~K~It~Lawep~hl~p~~r~las~--skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS---~DrtIkvw  273 (480)
T KOG0271|consen  200 KKWITALAWEPLHLVPPCRRLASS--SKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS---QDRTIKVW  273 (480)
T ss_pred             ccceeEEeecccccCCCccceecc--cCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC---CCceEEEE
Confidence            89999999965     67777774  67899999999654 44444  89999999997544 666666   78899999


Q ss_pred             ECCCCeEEE-----------------------------------------------------------------------
Q 020756          154 DYVDGKQLG-----------------------------------------------------------------------  162 (321)
Q Consensus       154 D~~~~~~i~-----------------------------------------------------------------------  162 (321)
                      +...|+++.                                                                       
T Consensus       274 ~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p  353 (480)
T KOG0271|consen  274 RALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP  353 (480)
T ss_pred             EccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc
Confidence            876643221                                                                       


Q ss_pred             --------eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756          163 --------TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       163 --------~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                              ...+|  -+.++.|||||+|||+++      .|..|+||+- +|+.+  +.+|...||+++|+.|+..+.+.
T Consensus       354 ~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~  427 (480)
T KOG0271|consen  354 FKSKKPITRMTGHQALVNHVSFSPDGRYIASAS------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG  427 (480)
T ss_pred             cccccchhhhhchhhheeeEEECCCccEEEEee------cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence                    11222  345679999999999999      5999999997 68877  78899999999999998877765


Q ss_pred             c
Q 020756          230 I  230 (321)
Q Consensus       230 ~  230 (321)
                      .
T Consensus       428 S  428 (480)
T KOG0271|consen  428 S  428 (480)
T ss_pred             C
Confidence            4

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.80  E-value=1.8e-18  Score=158.63  Aligned_cols=224  Identities=21%  Similarity=0.316  Sum_probs=160.9

Q ss_pred             CCceEEEEEcCCcCCCCcee--------eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-
Q 020756            3 SPASVQIYACGKDLQSQPLA--------RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-   73 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~--------~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-   73 (321)
                      --+.|-||++.... ..+..        ....++.+...+.||+.-...++..+.|         +...++.+...+.. 
T Consensus       145 ~~~dv~Vfd~tk~~-s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d---------~~i~lwdi~~~~~~~  214 (422)
T KOG0264|consen  145 SSGDVYVFDYTKHP-SKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD---------HTICLWDINAESKED  214 (422)
T ss_pred             CCCCEEEEEeccCC-CcccccccCCCceEEEeecccccccccccccceeEeeccCC---------CcEEEEeccccccCC
Confidence            34678899998743 22221        4555666678899999988777754322         33345555443331 


Q ss_pred             ----eeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCC--c-eeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756           74 ----EGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--R-PILEL--GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        74 ----~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~--~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                          ...+.-.|+..|.+++|+|... .|+.+  ..++.+.|||++.  . +.+..  |.+.+++++|+|.+.+|+.++ 
T Consensus       215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv--~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~-  291 (422)
T KOG0264|consen  215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV--GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG-  291 (422)
T ss_pred             ccccceEEeecCCcceehhhccccchhhheee--cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec-
Confidence                1122234899999999999665 55555  4478999999984  2 22222  789999999999888766655 


Q ss_pred             CCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--C-------------ce
Q 020756          144 GNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--G-------------SL  205 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g-------------~~  205 (321)
                       +.|++|.+||+++. +++.+++.|  .+.++.|||+-..++..+.     .|+.+.|||++  |             ++
T Consensus       292 -S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-----~D~rl~vWDls~ig~eq~~eda~dgppEl  365 (422)
T KOG0264|consen  292 -SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-----TDRRLNVWDLSRIGEEQSPEDAEDGPPEL  365 (422)
T ss_pred             -cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-----cCCcEEEEeccccccccChhhhccCCcce
Confidence             27999999999987 578888887  7999999998776665554     39999999993  1             12


Q ss_pred             e--EEeccCceEEEEEecCCCCCCCC--cchhhhcccccccccc
Q 020756          206 F--FKKMFDKLFQAEWKPVSPDKFGD--ISELIKSVGSLKVAET  245 (321)
Q Consensus       206 l--~~~~~~~~~~~~w~P~~~~~~~~--~~~~~~~~~~~~~~~~  245 (321)
                      +  +.+|...|.+++|+|..|.++..  .+++.+.|++......
T Consensus       366 lF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~  409 (422)
T KOG0264|consen  366 LFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYN  409 (422)
T ss_pred             eEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccccC
Confidence            3  66788999999999999998866  4788888887755443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=1.2e-17  Score=161.16  Aligned_cols=200  Identities=13%  Similarity=0.193  Sum_probs=154.2

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      |...||.+|.   ...|.+.+........+.||..|+.|++-+.       +  .|.--+|-|....  -..-+-.|...
T Consensus       287 G~f~LyelP~---f~lih~LSis~~~I~t~~~N~tGDWiA~g~~-------k--lgQLlVweWqsEs--YVlKQQgH~~~  352 (893)
T KOG0291|consen  287 GEFGLYELPD---FNLIHSLSISDQKILTVSFNSTGDWIAFGCS-------K--LGQLLVWEWQSES--YVLKQQGHSDR  352 (893)
T ss_pred             CeeEEEecCC---ceEEEEeecccceeeEEEecccCCEEEEcCC-------c--cceEEEEEeeccc--eeeeccccccc
Confidence            4567999999   6899999999899999999999999999632       1  1332344433222  12222347889


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      +.++++||||+.+++  |..|++|+|||.. +-.+.+|  |+..+..+.|+-.|+.|++++   +||+|+.||+..++..
T Consensus       353 i~~l~YSpDgq~iaT--G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIAT--GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRNF  427 (893)
T ss_pred             eeeEEECCCCcEEEe--ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeeccccee
Confidence            999999999999998  7889999999984 4466666  888899999999999999988   8888888888764332


Q ss_pred             E--------------------------------------------eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756          162 G--------------------------------------------TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG  195 (321)
Q Consensus       162 ~--------------------------------------------~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~  195 (321)
                      .                                            .+.+|  .+..++|+|+|..|++++      -|++
T Consensus       428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S------WDkT  501 (893)
T KOG0291|consen  428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS------WDKT  501 (893)
T ss_pred             eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc------ccce
Confidence            2                                            23344  566678999999999988      5999


Q ss_pred             EEEEeecCc--ee-EEeccCceEEEEEecCCCCCCCC
Q 020756          196 IKIFHHNGS--LF-FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       196 v~iw~~~g~--~l-~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      |+|||+-..  .+ .-.....+..++++|++..+.-.
T Consensus       502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence            999998443  33 44566789999999999888754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=1.2e-17  Score=144.08  Aligned_cols=196  Identities=15%  Similarity=0.279  Sum_probs=151.7

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      .-.||+|++.+   ++++++.. .+.+...+.|+|+|+++++.-.     .+       .|..++.... .........-
T Consensus        86 dk~ir~wd~r~---~k~~~~i~-~~~eni~i~wsp~g~~~~~~~k-----dD-------~it~id~r~~-~~~~~~~~~~  148 (313)
T KOG1407|consen   86 DKTIRIWDIRS---GKCTARIE-TKGENINITWSPDGEYIAVGNK-----DD-------RITFIDARTY-KIVNEEQFKF  148 (313)
T ss_pred             CceEEEEEecc---CcEEEEee-ccCcceEEEEcCCCCEEEEecC-----cc-------cEEEEEeccc-ceeehhcccc
Confidence            45799999999   78887766 4678889999999999999622     11       2444444322 1222222345


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      -++.+.|+-+++.|+...|  -|.+.|... ..+++.++  |...+-+|.|+|+|+++++++   .|..+.+||++..-|
T Consensus       149 e~ne~~w~~~nd~Fflt~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs---ADAlvSLWD~~ELiC  223 (313)
T KOG1407|consen  149 EVNEISWNNSNDLFFLTNG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS---ADALVSLWDVDELIC  223 (313)
T ss_pred             eeeeeeecCCCCEEEEecC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeecc---ccceeeccChhHhhh
Confidence            6889999988887777533  468888776 56778877  777788899999999999999   999999999998888


Q ss_pred             EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe-ccCceEEEEEecCCCCCC
Q 020756          161 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       161 i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~-~~~~~~~~~w~P~~~~~~  227 (321)
                      +..+...  .+..++||.||++||+++      .|.-|-|-++ +|..+.+. .....+.|+|+|..+.+.
T Consensus       224 ~R~isRldwpVRTlSFS~dg~~lASaS------EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  224 ERCISRLDWPVRTLSFSHDGRMLASAS------EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLA  288 (313)
T ss_pred             heeeccccCceEEEEeccCcceeeccC------ccceEEeEecccCCeEEEeeccCCceeEEecCCCceee
Confidence            8877775  788899999999999999      5888988887 78888665 556899999999875443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.79  E-value=8.6e-18  Score=154.83  Aligned_cols=199  Identities=20%  Similarity=0.339  Sum_probs=157.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..|.+|||+.+.    ..+.+..+++..+..++||.+|+||+..   ++|++         ..+++...+...+..-.|+
T Consensus       255 ~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~---~vD~t---------tilwd~~~g~~~q~f~~~s  318 (524)
T KOG0273|consen  255 EDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSG---GVDGT---------TILWDAHTGTVKQQFEFHS  318 (524)
T ss_pred             cCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEec---cCCcc---------EEEEeccCceEEEeeeecc
Confidence            368899999876    6788889999999999999999999885   23322         3344543332233222467


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      .+-.|+.|-.+. .|+++  ..++.|.++-+.. .++.+|  |++.|+.+.|+|.|.+|++++   .|++++||.+....
T Consensus       319 ~~~lDVdW~~~~-~F~ts--~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S---dD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  319 APALDVDWQSND-EFATS--STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS---DDGTLKIWSMGQSN  392 (524)
T ss_pred             CCccceEEecCc-eEeec--CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec---CCCeeEeeecCCCc
Confidence            777899998654 57765  5577899998854 477777  899999999999999999999   99999999998888


Q ss_pred             EEEeeeCC--CeeeEEEccCC---------CEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCC
Q 020756          160 QLGTTRAE--CSVTSEWSPDG---------RYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       160 ~i~~~~~~--~~~~~~wSpdG---------~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~  225 (321)
                      +...+.+|  .++.+.|||+|         ..|++++.      |+.|++||+ +|..+  +..|...||+++++|++.+
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~------dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y  466 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF------DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY  466 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec------CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence            88888777  79999999955         45777774      999999998 67777  4468889999999999998


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      +.+.
T Consensus       467 lAsG  470 (524)
T KOG0273|consen  467 LASG  470 (524)
T ss_pred             EEec
Confidence            8875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=161.65  Aligned_cols=186  Identities=18%  Similarity=0.242  Sum_probs=140.6

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  106 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~  106 (321)
                      .....+.++++|++++...   .++.         +..+...+..  .......|...|++++|+|+|++++.  +.+|.
T Consensus       160 ~sv~~~~fs~~g~~l~~~~---~~~~---------i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s--~s~D~  225 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAAS---SDGL---------IRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLS--GSDDK  225 (456)
T ss_pred             CceEEEEEcCCCCeEEEcc---CCCc---------EEEeecccccchhhccccccccceeeeEECCCCcEEEE--ecCCc
Confidence            3455688999999965542   1111         2222222221  12222468889999999999997777  57899


Q ss_pred             eEEEEeC-CC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCE
Q 020756          107 SATIFNK-KC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY  180 (321)
Q Consensus       107 ~i~i~d~-~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~  180 (321)
                      +++|||+ .. ..+.++  |...++++.|+|+|++|++++   .|++|+|||+++++++..+..|  .++.++|++||++
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs---~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~  302 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS---DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL  302 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec---CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence            9999999 33 466666  889999999999999999999   9999999999999999999988  7889999999999


Q ss_pred             EEEEEcCCceeecCcEEEEeecCce--e---EEeccC--ceEEEEEecCCCCCCCCc-chhhhcc
Q 020756          181 FMTATTAPRLQIDNGIKIFHHNGSL--F---FKKMFD--KLFQAEWKPVSPDKFGDI-SELIKSV  237 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~g~~--l---~~~~~~--~~~~~~w~P~~~~~~~~~-~~~~~~~  237 (321)
                      |++++      .|+.++|||+.+..  +   ...+..  .++.+.|+|++.+++... +...+.|
T Consensus       303 l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w  361 (456)
T KOG0266|consen  303 LVSAS------YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW  361 (456)
T ss_pred             EEEcC------CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence            99997      59999999996554  2   222222  589999999999998763 3244444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.77  E-value=1.3e-18  Score=157.82  Aligned_cols=186  Identities=16%  Similarity=0.278  Sum_probs=150.1

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      +..+..+.|.|+|+.|++.++          .|+..||....+.  -..+...|+.+|..+.||++|.+++.  |+.++.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~----------SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~g~wmiS--gD~gG~  161 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQ----------SGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHNGTWMIS--GDKGGM  161 (464)
T ss_pred             ccceeeEEEcCCCceeEeecc----------cccEEEecCceee--HHHHhhhhcccceeEEEccCCCEEEE--cCCCce
Confidence            567779999999999998643          3777777432221  12233369999999999999999887  788899


Q ss_pred             EEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEE
Q 020756          108 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFM  182 (321)
Q Consensus       108 i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~  182 (321)
                      |++|+...+.++.+   |...|.+++|||....+++++   .||.|+|||....+.-..+.+|  .+.+++|+|.-.+|+
T Consensus       162 iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  162 IKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             EEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec---CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence            99999877666655   458899999999999999999   9999999998877665556666  899999999999999


Q ss_pred             EEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCCc-chhhhc
Q 020756          183 TATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGDI-SELIKS  236 (321)
Q Consensus       183 t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~~-~~~~~~  236 (321)
                      +++      .||.|++||. +|.++  ...|...|..+.|+|+.+.+++.. |..++.
T Consensus       239 sgs------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  239 SGS------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV  290 (464)
T ss_pred             Ecc------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence            999      4999999998 67777  556778899999999999888764 444433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.77  E-value=5.7e-17  Score=157.31  Aligned_cols=201  Identities=18%  Similarity=0.277  Sum_probs=147.2

Q ss_pred             CCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CCCceeeeec
Q 020756            3 SPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLVPL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g~~~~~v~l   79 (321)
                      ..+.+++|....   ..  .+....-+...+..+.|+|+|.+++...   .|.         .|..+++ .+....++..
T Consensus       179 ~~~~i~~~~~~~---~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s---~D~---------tiriwd~~~~~~~~~~l~  243 (456)
T KOG0266|consen  179 SDGLIRIWKLEG---IKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS---DDK---------TLRIWDLKDDGRNLKTLK  243 (456)
T ss_pred             CCCcEEEeeccc---ccchhhccccccccceeeeEECCCCcEEEEec---CCc---------eEEEeeccCCCeEEEEec
Confidence            457788999855   33  4444455677899999999999776542   121         2455555 3333444445


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .|...|++++|+|+|+.++.  |..|++|+|||+++ ..+..+  |...++.++|+++|++|++++   .|+.|+|||+.
T Consensus       244 gH~~~v~~~~f~p~g~~i~S--gs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s---~d~~i~vwd~~  318 (456)
T KOG0266|consen  244 GHSTYVTSVAFSPDGNLLVS--GSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS---YDGTIRVWDLE  318 (456)
T ss_pred             CCCCceEEEEecCCCCEEEE--ecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC---CCccEEEEECC
Confidence            79999999999999966666  57799999999975 555555  889999999999999999998   89999999999


Q ss_pred             CCe--EEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCc---eEEEEEecCCC
Q 020756          157 DGK--QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDK---LFQAEWKPVSP  224 (321)
Q Consensus       157 ~~~--~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~---~~~~~w~P~~~  224 (321)
                      ++.  ++..+..+    .++.+.|||+|.||++++      .|+.+++|++. +..+  +..+...   +..+...+...
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~------~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (456)
T KOG0266|consen  319 TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS------LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK  392 (456)
T ss_pred             CCceeeeecccCCCCCCceeEEEECCCCcEEEEec------CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence            998  44555443    368899999999999999      48899999997 4443  4444443   22333345555


Q ss_pred             CCCCC
Q 020756          225 DKFGD  229 (321)
Q Consensus       225 ~~~~~  229 (321)
                      .+++.
T Consensus       393 ~i~sg  397 (456)
T KOG0266|consen  393 LIYSG  397 (456)
T ss_pred             eEEEE
Confidence            55544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.77  E-value=2.9e-16  Score=138.48  Aligned_cols=202  Identities=16%  Similarity=0.266  Sum_probs=151.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++..   ++.+.....+......+.|+++++.++...     .       ...++.++............|
T Consensus        70 ~~~~~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~-------~~~i~~~~~~~~~~~~~~~~~  134 (289)
T cd00200          70 SSDKTIRLWDLET---GECVRTLTGHTSYVSSVAFSPDGRILSSSS-----R-------DKTIKVWDVETGKCLTTLRGH  134 (289)
T ss_pred             cCCCeEEEEEcCc---ccceEEEeccCCcEEEEEEcCCCCEEEEec-----C-------CCeEEEEECCCcEEEEEeccC
Confidence            3578999999988   566666666666788999999977665531     0       122455555432222222247


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .+.|.++.|+|++..+++.  ..++.+.+||++ .+.+..+  +...+.++.|+|+++.|++++   .++.|.+||+.++
T Consensus       135 ~~~i~~~~~~~~~~~l~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~  209 (289)
T cd00200         135 TDWVNSVAFSPDGTFVASS--SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTG  209 (289)
T ss_pred             CCcEEEEEEcCcCCEEEEE--cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCC
Confidence            7899999999998877763  457899999996 4444444  566899999999999999998   6899999999988


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +.+..+..+  .+..+.|+|++.+++++.      .++.+++|++. ++.+  ...+...+..+.|+|+...++..
T Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (289)
T cd00200         210 KCLGTLRGHENGVNSVAFSPDGYLLASGS------EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG  279 (289)
T ss_pred             ceecchhhcCCceEEEEEcCCCcEEEEEc------CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence            888877444  688899999988888877      48999999996 4444  33455689999999987766654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.76  E-value=1.7e-16  Score=136.19  Aligned_cols=183  Identities=14%  Similarity=0.232  Sum_probs=139.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeec
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l   79 (321)
                      |.+|.|+||++.+     +.+++.| |++.+..+.-+|+...|++.     |.+     |.  +..+++... ......-
T Consensus       102 seDgt~kIWdlR~-----~~~qR~~~~~spVn~vvlhpnQteLis~-----dqs-----g~--irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen  102 SEDGTVKIWDLRS-----LSCQRNYQHNSPVNTVVLHPNQTELISG-----DQS-----GN--IRVWDLGENSCTHELIP  164 (311)
T ss_pred             CCCceEEEEeccC-----cccchhccCCCCcceEEecCCcceEEee-----cCC-----Cc--EEEEEccCCccccccCC
Confidence            6789999999987     3445554 45778888999998888875     222     33  344444332 1222222


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      +...+|.++...|||+.++.+  ...|...+|++-+       .++..|  |.+.+-.+.+|||+++|++++   .|.++
T Consensus       165 e~~~~i~sl~v~~dgsml~a~--nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv  239 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAA--NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTV  239 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEe--cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec---CCceE
Confidence            345789999999999999886  6678999999843       345555  788899999999999999999   99999


Q ss_pred             EEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccC
Q 020756          151 AFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFD  212 (321)
Q Consensus       151 ~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~  212 (321)
                      +||+.++. +.-..+++|  .+.++.||-||+||+|+++      |+..+||++. |+.+  +.+|..
T Consensus       240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass------d~~~rlW~~~~~k~v~qy~gh~K  301 (311)
T KOG0315|consen  240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS------DHTARLWDLSAGKEVRQYQGHHK  301 (311)
T ss_pred             EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC------CCceeecccccCceeeecCCccc
Confidence            99999988 555666777  7899999999999999997      9999999994 5543  445544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.75  E-value=2.2e-16  Score=147.33  Aligned_cols=178  Identities=21%  Similarity=0.373  Sum_probs=136.2

Q ss_pred             CceEEEEEcCCcCCCCce--eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            4 PASVQIYACGKDLQSQPL--ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i--~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      -|.||||+..+   ...+  .+...|-..+-++.|+.+|++|+++-      .|+..+|.  ++.++. |.....+. .|
T Consensus        80 sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG------EGrerfg~--~F~~DS-G~SvGei~-Gh  146 (603)
T KOG0318|consen   80 SGKVRIWDTTQ---KEHILKNEFQVLAGPIKDISWDFDSKRIAAVG------EGRERFGH--VFLWDS-GNSVGEIT-GH  146 (603)
T ss_pred             cCcEEEEeccC---cceeeeeeeeecccccccceeCCCCcEEEEEe------cCccceeE--EEEecC-CCccceee-cc
Confidence            47899999988   3333  33344667888999999999999863      24444553  334333 32222332 57


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeC---CCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK---KCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~---~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|+++.|-|..-+ -++.+..|..+.+|+-   +.+..+.-|...+++++|||||++++++|   .||.|++||-.++
T Consensus       147 Sr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g---sDgki~iyDGktg  222 (603)
T KOG0318|consen  147 SRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG---SDGKIYIYDGKTG  222 (603)
T ss_pred             ceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec---CCccEEEEcCCCc
Confidence            889999999997653 3333677999999985   22222333788999999999999999999   9999999999999


Q ss_pred             eEEEeee---CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          159 KQLGTTR---AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       159 ~~i~~~~---~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      +++..++   +|  .+..++||||+..|+|++      .|..++|||++..
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S------aDkt~KIWdVs~~  267 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVS------ADKTIKIWDVSTN  267 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEec------CCceEEEEEeecc
Confidence            9999988   45  789999999999999999      5999999999544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.75  E-value=5.8e-16  Score=136.58  Aligned_cols=200  Identities=14%  Similarity=0.206  Sum_probs=150.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++..   ++.+.....+......+.|+++++.+++...          .|  .++.++............+.
T Consensus        29 ~~g~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~--~i~i~~~~~~~~~~~~~~~~   93 (289)
T cd00200          29 GDGTIKVWDLET---GELLRTLKGHTGPVRDVAASADGTYLASGSS----------DK--TIRLWDLETGECVRTLTGHT   93 (289)
T ss_pred             cCcEEEEEEeeC---CCcEEEEecCCcceeEEEECCCCCEEEEEcC----------CC--eEEEEEcCcccceEEEeccC
Confidence            468999999988   5566666555556669999999988776521          12  24555554432222223467


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|.++.|+|+++.+++.  ..++.+.+||+. .+.+..+  +...+.++.|+|++++|++++   .++.|.+||+++++
T Consensus        94 ~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~  168 (289)
T cd00200          94 SYVSSVAFSPDGRILSSS--SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS---QDGTIKLWDLRTGK  168 (289)
T ss_pred             CcEEEEEEcCCCCEEEEe--cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc---CCCcEEEEEccccc
Confidence            799999999998777663  457899999997 5555555  567899999999999888886   68999999999888


Q ss_pred             EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCC
Q 020756          160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      .+..+..+  .+..+.|+|+|++|++++.      ++.+++||+. ++.+  +..+...+..+.|+|+...++.
T Consensus       169 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         169 CVATLTGHTGEVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             cceeEecCccccceEEECCCcCEEEEecC------CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence            77777765  5889999999999999884      8999999996 4444  2245568999999998554444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.8e-15  Score=131.28  Aligned_cols=194  Identities=16%  Similarity=0.248  Sum_probs=145.1

Q ss_pred             CCCceEEEEEcCCcCCCCceee--e-ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            2 GSPASVQIYACGKDLQSQPLAR--R-SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~--~-~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      |..-.||||+....  ..-...  . -+.+..+..++|+|.|++|+...          |.+...||. ..++.+++.-.
T Consensus        34 g~Dk~vriw~~~~~--~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS----------FD~t~~Iw~-k~~~efecv~~  100 (312)
T KOG0645|consen   34 GTDKAVRIWSTSSG--DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS----------FDATVVIWK-KEDGEFECVAT  100 (312)
T ss_pred             cCCceEEEEecCCC--CcEEEEEeccccchheeeeeeecCCCcEEEEee----------ccceEEEee-cCCCceeEEee
Confidence            56778999999851  221211  1 13567788999999999887642          223322332 22555566544


Q ss_pred             cC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           79 LR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        79 l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      |. |+..|.+++||++|.+||+|  ..|..+.||.+...      .+.+-|.+.|..+.|+|...+|++++   .|.+|+
T Consensus       101 lEGHEnEVK~Vaws~sG~~LATC--SRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S---YDnTIk  175 (312)
T KOG0645|consen  101 LEGHENEVKCVAWSASGNYLATC--SRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS---YDNTIK  175 (312)
T ss_pred             eeccccceeEEEEcCCCCEEEEe--eCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec---cCCeEE
Confidence            44 89999999999999999998  66889999987522      22333889999999999999999999   888999


Q ss_pred             EEECC---CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEe
Q 020756          152 FWDYV---DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWK  220 (321)
Q Consensus       152 iwD~~---~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~  220 (321)
                      +|+-.   ..+++.++..+  .+..+.|++.|..|++++.      |.+++||-+- .-+...+...+|++.|-
T Consensus       176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd------D~tv~Iw~~~-~~~~~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD------DGTVSIWRLY-TDLSGMHSRALYDVPWD  242 (312)
T ss_pred             EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC------CcceEeeeec-cCcchhcccceEeeeec
Confidence            99866   34889999887  5778999999999999994      9999999853 11233455789999997

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=132.81  Aligned_cols=204  Identities=14%  Similarity=0.147  Sum_probs=158.5

Q ss_pred             CCCceEEEEEcCCcCCCCce---eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            2 GSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i---~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      |......||++.+......+   ....-+..-.....|-.|+..| ..          +  |..+.-++++..+...+..
T Consensus       116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il-T~----------S--GD~TCalWDie~g~~~~~f  182 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL-TG----------S--GDMTCALWDIETGQQTQVF  182 (343)
T ss_pred             CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceE-ec----------C--CCceEEEEEcccceEEEEe
Confidence            67788899999863211111   2222233344455666654433 21          1  6666788888777666666


Q ss_pred             cCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           79 LRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        79 l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      ..|.+.|.++.++| +++.|+.  |.-|+..+|||++ +..+++|  |+..||++.|.|+|--+++++   .|++.++||
T Consensus       183 ~GH~gDV~slsl~p~~~ntFvS--g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS---DD~tcRlyD  257 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPSDGNTFVS--GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS---DDATCRLYD  257 (343)
T ss_pred             cCCcccEEEEecCCCCCCeEEe--cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC---CCceeEEEe
Confidence            68999999999999 8988888  6778999999996 4466666  889999999999999999998   999999999


Q ss_pred             CCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCC
Q 020756          155 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       155 ~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~  227 (321)
                      ++..+.+..+...    .++.++||-.||+|..+..      |.++.+||. .|+.+  +.+|...|..+.-+|++--+.
T Consensus       258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~  331 (343)
T KOG0286|consen  258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA  331 (343)
T ss_pred             ecCCcEEeeeccCcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE
Confidence            9998888888764    6788999999999999884      999999997 66655  678999999999999987666


Q ss_pred             CC
Q 020756          228 GD  229 (321)
Q Consensus       228 ~~  229 (321)
                      +.
T Consensus       332 Tg  333 (343)
T KOG0286|consen  332 TG  333 (343)
T ss_pred             ec
Confidence            53

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.5e-16  Score=153.22  Aligned_cols=196  Identities=17%  Similarity=0.243  Sum_probs=150.3

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      .+.|.+|.+|++..+..+   .-|......+.++-+|+++++..            ....|.+++.+......+...|++
T Consensus        75 ~~tv~~y~fps~~~~~iL---~Rftlp~r~~~v~g~g~~iaags------------dD~~vK~~~~~D~s~~~~lrgh~a  139 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTIL---ARFTLPIRDLAVSGSGKMIAAGS------------DDTAVKLLNLDDSSQEKVLRGHDA  139 (933)
T ss_pred             cceEEEeeCCCCCcccee---eeeeccceEEEEecCCcEEEeec------------CceeEEEEeccccchheeecccCC
Confidence            568999999995433334   33444677889999999998852            122367777766656677778999


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEE---------eC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILE---------LG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~---------~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      +|.++.++|.|..||++  ..+|++++||+... ..++         +. ...+..++|+|+|..+++.+   .++.|.+
T Consensus       140 pVl~l~~~p~~~fLAvs--s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkv  214 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVS--SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKV  214 (933)
T ss_pred             ceeeeeEcCCCCEEEEE--ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEE
Confidence            99999999999999997  45889999999543 2222         22 44677899999988888888   8999999


Q ss_pred             EECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCC
Q 020756          153 WDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       153 wD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~  226 (321)
                      |+..+++....+...    ....+.|||+|+|||+++      .++.|.|||..... .+.....|+..+|.|+.+.+
T Consensus       215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~------~~g~I~vWnv~t~~-~~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST------LDGQILVWNVDTHE-RHEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             EccCCceeheeecccccccceEEEEEcCCCcEEeeec------cCCcEEEEecccch-hccccceeEEEecCCCCCee
Confidence            999998776665542    467799999999999999      49999999997511 23445689999999988644

>PTZ00420 coronin; Provisional

Probab=99.72  E-value=4.8e-15  Score=145.68  Aligned_cols=183  Identities=11%  Similarity=0.161  Sum_probs=127.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-----eee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-----EGL   76 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-----~~~   76 (321)
                      |..+.|+||++..   ..++.....+...+..+.|+|+...+++.++.|         |...||.+...+..     +..
T Consensus        51 G~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~D---------gtIrIWDi~t~~~~~~~i~~p~  118 (568)
T PTZ00420         51 GLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEILASGSED---------LTIRVWEIPHNDESVKEIKDPQ  118 (568)
T ss_pred             CceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCCccccccccce
Confidence            4567788888876   456767777788899999999844444443222         33334433222210     011


Q ss_pred             -eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           77 -VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        77 -v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                       ....|...|.+++|+|++..+++. +..|+.|.|||++.. .+..+ +...+.++.|+|+|++|++++   .++.|+||
T Consensus       119 ~~L~gH~~~V~sVaf~P~g~~iLaS-gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s---~D~~IrIw  194 (568)
T PTZ00420        119 CILKGHKKKISIIDWNPMNYYIMCS-SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC---VGKHMHII  194 (568)
T ss_pred             EEeecCCCcEEEEEECCCCCeEEEE-EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe---cCCEEEEE
Confidence             122478899999999999876543 456899999999644 44455 567899999999999999988   88999999


Q ss_pred             ECCCCeEEEeeeCCC--e-ee----EEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          154 DYVDGKQLGTTRAEC--S-VT----SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       154 D~~~~~~i~~~~~~~--~-~~----~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      |+++++.+..+..|.  + ..    ..|++|+.+|++++....  .++.|+|||+.
T Consensus       195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr  248 (568)
T PTZ00420        195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLK  248 (568)
T ss_pred             ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECC
Confidence            999999888887762  1 12    235699999999884210  12479999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.1e-15  Score=145.32  Aligned_cols=201  Identities=11%  Similarity=0.121  Sum_probs=135.3

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.+|++..   ++ ......++.....+.|||||+.|++....         .|...||.++..+....++. .....
T Consensus       223 ~~i~i~dl~~---G~-~~~l~~~~~~~~~~~~SPDG~~La~~~~~---------~g~~~I~~~d~~tg~~~~lt-~~~~~  288 (429)
T PRK03629        223 SALVIQTLAN---GA-VRQVASFPRHNGAPAFSPDGSKLAFALSK---------TGSLNLYVMDLASGQIRQVT-DGRSN  288 (429)
T ss_pred             cEEEEEECCC---CC-eEEccCCCCCcCCeEECCCCCEEEEEEcC---------CCCcEEEEEECCCCCEEEcc-CCCCC
Confidence            3567777755   33 33444455556679999999999986421         13446899998776444443 33456


Q ss_pred             eEEEEECcCCCEEEEEEccC-CCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           85 VHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      +..+.|+|||+.|+++.... ...|.++|+.+.....+  .......+.|||||++|++.+..+....|++||+.+++..
T Consensus       289 ~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        289 NTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             cCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            78999999999998875321 12566667766544444  3344567999999999999774334467999999887543


Q ss_pred             EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecC
Q 020756          162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPV  222 (321)
Q Consensus       162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~  222 (321)
                      ............|||||++|++++..-   ....+.+++++|+....  .+...+.+.+|+|.
T Consensus       369 ~Lt~~~~~~~p~~SpDG~~i~~~s~~~---~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        369 VLTDTFLDETPSIAPNGTMVIYSSSQG---MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EeCCCCCCCCceECCCCCEEEEEEcCC---CceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            322222345689999999999988510   12237788888876633  35567888999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.70  E-value=3.5e-16  Score=140.95  Aligned_cols=205  Identities=20%  Similarity=0.316  Sum_probs=142.9

Q ss_pred             CCceEEEEEcCCc-------------CCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc
Q 020756            3 SPASVQIYACGKD-------------LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT   69 (321)
Q Consensus         3 ~p~~v~v~~~~~~-------------~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~   69 (321)
                      .-|+|.||++...             ....++.+....+.....+.|||--+..+..    -|..+.       +|++..
T Consensus       173 e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls----GDc~~~-------I~lw~~  241 (440)
T KOG0302|consen  173 ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS----GDCVKG-------IHLWEP  241 (440)
T ss_pred             ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc----Cccccc-------eEeeee
Confidence            4578999998751             1345778888888899999999954443321    122222       333322


Q ss_pred             CCCc---eeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCce----eE-EeCCcCeeeEEEcCCCCeEEE
Q 020756           70 DGTH---EGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRP----IL-ELGSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        70 ~g~~---~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~----~~-~~~~~~~~~~~~sPdG~~l~~  140 (321)
                      ..+.   ..+-...|...|-+++|||.-+ .|+.|  .-|+.|.|||++..+    +. .-|.+.||.|.||-+-.+|++
T Consensus       242 ~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc--S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas  319 (440)
T KOG0302|consen  242 STGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC--SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS  319 (440)
T ss_pred             ccCceeecCccccccccchhhhccCCccCceEEee--ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee
Confidence            1110   1111224899999999999755 56665  558999999997652    22 238889999999998888999


Q ss_pred             EccCCCCCcEEEEECCCC---eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC------------
Q 020756          141 AGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG------------  203 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~---~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g------------  203 (321)
                      ++   .+|++.|||+++.   +.+.+|+.|  .|++++|+|...-++.++.     .|+.+.|||+.-            
T Consensus       320 G~---DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-----~D~QitiWDlsvE~D~ee~~~~a~  391 (440)
T KOG0302|consen  320 GG---DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-----EDNQITIWDLSVEADEEEIDQEAA  391 (440)
T ss_pred             cC---CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-----CCCcEEEEEeeccCChhhhccccc
Confidence            88   9999999999864   678888887  8999999996444443333     399999999821            


Q ss_pred             --------ceeEE-eccCceEEEEEecCCCCCCC
Q 020756          204 --------SLFFK-KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       204 --------~~l~~-~~~~~~~~~~w~P~~~~~~~  228 (321)
                              ++|+. ....++.++.|+++-|.++-
T Consensus       392 ~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv  425 (440)
T KOG0302|consen  392 EGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV  425 (440)
T ss_pred             cchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence                    13332 24568999999998887663

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.70  E-value=3e-16  Score=145.11  Aligned_cols=202  Identities=16%  Similarity=0.248  Sum_probs=156.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |+++.|.||++-..  +.++++-..+...+.++.||.+|+.++...          |.+  .|.++++..+ .+...+..
T Consensus       234 gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s----------fD~--~lKlwDtETG-~~~~~f~~  298 (503)
T KOG0282|consen  234 GMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSAS----------FDR--FLKLWDTETG-QVLSRFHL  298 (503)
T ss_pred             CCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCCeeeeee----------cce--eeeeeccccc-eEEEEEec
Confidence            67899999999984  788888888889999999999999998752          222  2556666555 34444555


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...++++.|.||+..++++ |..+++|..||++.. .+++.  |-+.++++.|-|+|+.+++++   .+++|.||+....
T Consensus       299 ~~~~~cvkf~pd~~n~fl~-G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS---Ddks~riWe~~~~  374 (503)
T KOG0282|consen  299 DKVPTCVKFHPDNQNIFLV-GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS---DDKSVRIWENRIP  374 (503)
T ss_pred             CCCceeeecCCCCCcEEEE-ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec---cCccEEEEEcCCC
Confidence            6788999999999665555 777999999999754 44555  678999999999999999998   8999999987753


Q ss_pred             eEE--------------------------------E--------------eeeCC----CeeeEEEccCCCEEEEEEcCC
Q 020756          159 KQL--------------------------------G--------------TTRAE----CSVTSEWSPDGRYFMTATTAP  188 (321)
Q Consensus       159 ~~i--------------------------------~--------------~~~~~----~~~~~~wSpdG~~l~t~~s~~  188 (321)
                      ..+                                .              .+++|    ....+.|||||++|++|.+  
T Consensus       375 v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds--  452 (503)
T KOG0282|consen  375 VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS--  452 (503)
T ss_pred             ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC--
Confidence            211                                1              12233    4456899999999999996  


Q ss_pred             ceeecCcEEEEeecC-cee--EEeccCceEEEEEecCCCCCCC
Q 020756          189 RLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       189 rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                          |+.+.+||... +++  .+.|...|..+.|+|..+..+.
T Consensus       453 ----dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva  491 (503)
T KOG0282|consen  453 ----DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA  491 (503)
T ss_pred             ----CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence                99999999954 343  5556778999999998776554

>PTZ00421 coronin; Provisional

Probab=99.70  E-value=1.3e-14  Score=141.33  Aligned_cols=184  Identities=11%  Similarity=0.169  Sum_probs=129.2

Q ss_pred             CCCceEEEEEcCCcC----CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            2 GSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~----~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      +.++.|+||+++...    ...++.....+...+..+.|+|++..+++.++.|         +.  +.++++........
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D---------gt--VrIWDl~tg~~~~~  163 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD---------MV--VNVWDVERGKAVEV  163 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC---------CE--EEEEECCCCeEEEE
Confidence            467899999998721    1134555555667788899999986655554322         22  45555554422222


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcC-eeeEEEcCCCCeEEEEccC-CCCCcEEE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGP-YNTVRWNPKGKFLCLAGFG-NLPGDMAF  152 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~-~~~~~~sPdG~~l~~~g~~-n~~g~i~i  152 (321)
                      ...|.+.|.+++|+|+|..|++  +..|+.|+|||++. ..+..+  |.+. ...+.|+|++..|+++|+. ..++.|.|
T Consensus       164 l~~h~~~V~sla~spdG~lLat--gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        164 IKCHSDQITSLEWNLDGSLLCT--TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML  241 (493)
T ss_pred             EcCCCCceEEEEEECCCCEEEE--ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence            2247889999999999999888  47789999999964 455555  4333 4568899999999888753 35789999


Q ss_pred             EECCCCe-EEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          153 WDYVDGK-QLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       153 wD~~~~~-~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ||+++.. .+.....+   .+..+.|++|+.+|++++.     .|+.|++||+..
T Consensus       242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk-----gDg~Iriwdl~~  291 (493)
T PTZ00421        242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK-----GEGNIRCFELMN  291 (493)
T ss_pred             EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe-----CCCeEEEEEeeC
Confidence            9998753 34433322   3455689999999998874     389999999953

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=3.6e-15  Score=144.31  Aligned_cols=190  Identities=19%  Similarity=0.268  Sum_probs=148.4

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEe----------------------------cccC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS----------------------------DVDK   53 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~----------------------------d~d~   53 (321)
                      +.++.|+||+..+   +-++.+.+-+...+..+.|+..|+.++..+-.                            .+|.
T Consensus       369 ~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~  445 (893)
T KOG0291|consen  369 AEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP  445 (893)
T ss_pred             cCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC
Confidence            4678999999998   77888888888999999999998877654210                            2355


Q ss_pred             CCceee-c---ceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEe-CCcCe
Q 020756           54 TNQSYY-G---ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL-GSGPY  126 (321)
Q Consensus        54 t~~s~~-g---~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~-~~~~~  126 (321)
                      +|..-. |   .-.||.|+...++.-.+--.|++||.++.|+|+|+.|+.  +.-|.+|++||+-  ...+-++ ....+
T Consensus       446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS--~SWDkTVRiW~if~s~~~vEtl~i~sdv  523 (893)
T KOG0291|consen  446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS--GSWDKTVRIWDIFSSSGTVETLEIRSDV  523 (893)
T ss_pred             CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe--ccccceEEEEEeeccCceeeeEeeccce
Confidence            555421 2   234677777777666666679999999999999998888  6889999999983  3355566 56788


Q ss_pred             eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC----------------------CCeeeEEEccCCCEEEEE
Q 020756          127 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------------------ECSVTSEWSPDGRYFMTA  184 (321)
Q Consensus       127 ~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~----------------------~~~~~~~wSpdG~~l~t~  184 (321)
                      -.+.|+|||+.|+++.   ++|+|.|||.+.+..+.++++                      ...+.+++|+||.+|+++
T Consensus       524 l~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg  600 (893)
T KOG0291|consen  524 LAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG  600 (893)
T ss_pred             eEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence            8999999999999999   999999999987665543321                      245679999999999999


Q ss_pred             EcCCceeecCcEEEEeecCce
Q 020756          185 TTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       185 ~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      +.      .+.|+|||+..+.
T Consensus       601 G~------sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  601 GE------SNSICIYDVPEGV  615 (893)
T ss_pred             CC------cccEEEEECchhh
Confidence            94      8999999995443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=8.4e-15  Score=127.12  Aligned_cols=186  Identities=15%  Similarity=0.292  Sum_probs=137.6

Q ss_pred             eecccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCC--ceeeeec--CCCCCeEEEEECcCCCEEE
Q 020756           24 RSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPL--RKEGPVHDVQWSYSGSEFA   98 (321)
Q Consensus        24 ~~~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~--~~~~v~l--~~~~~v~~~~wsP~g~~l~   98 (321)
                      ....+...-.+.|+|- |..|+. +.+|     +      .+-+++..+.  -.+...+  .|+..|..++|+|.|++||
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAs-cg~D-----k------~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La   77 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILAS-CGTD-----K------AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA   77 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEe-ecCC-----c------eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE
Confidence            3444556778999998 774443 3322     1      1333333321  1222222  3788999999999999988


Q ss_pred             EEEccCCCeEEEEeCC---CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC---eEEEeeeCC--C
Q 020756           99 VVYGFMPASATIFNKK---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--C  168 (321)
Q Consensus        99 ~~~g~~~~~i~i~d~~---~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~---~~i~~~~~~--~  168 (321)
                      ..  ..|+++.||...   .+.+..+  |...|.+++||++|++|++++   .|..|.||.....   +++..++.|  .
T Consensus        78 ~a--SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCS---RDKSVWiWe~deddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   78 SA--SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCS---RDKSVWIWEIDEDDEFECIAVLQEHTQD  152 (312)
T ss_pred             Ee--eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEee---CCCeEEEEEecCCCcEEEEeeecccccc
Confidence            84  779999999653   2344444  889999999999999999999   9999999998743   788888877  7


Q ss_pred             eeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cc---ee--EEeccCceEEEEEecCCCCCCCCcch
Q 020756          169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GS---LF--FKKMFDKLFQAEWKPVSPDKFGDISE  232 (321)
Q Consensus       169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~---~l--~~~~~~~~~~~~w~P~~~~~~~~~~~  232 (321)
                      +-.+.|+|.-.+|++++      +||+|++|... +.   ++  ..++...|+.+.|.|.+..+.+..++
T Consensus       153 VK~V~WHPt~dlL~S~S------YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD  216 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCS------YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD  216 (312)
T ss_pred             ccEEEEcCCcceeEEec------cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence            88899999999999998      79999999874 33   23  44566789999999998776665433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=9.4e-15  Score=141.15  Aligned_cols=206  Identities=10%  Similarity=0.060  Sum_probs=138.1

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|.+++..    +....+.+........+.|||||+.|+++...    .     |...||.+++.++....+. ...+.+
T Consensus       183 ~l~~~d~d----g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~----~-----g~~~i~~~dl~~g~~~~l~-~~~g~~  248 (435)
T PRK05137        183 RLAIMDQD----GANVRYLTDGSSLVLTPRFSPNRQEITYMSYA----N-----GRPRVYLLDLETGQRELVG-NFPGMT  248 (435)
T ss_pred             EEEEECCC----CCCcEEEecCCCCeEeeEECCCCCEEEEEEec----C-----CCCEEEEEECCCCcEEEee-cCCCcc
Confidence            45555543    34455566666678899999999999887421    1     2346888888766444443 456778


Q ss_pred             EEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           86 HDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      ..+.|||||+.|++... .....|.++|+.+.....+  +........|+|||+.|++.+..+...+|++||+..++...
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~  328 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR  328 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence            89999999999887532 2223688889987766666  33445679999999999988743334589999987764333


Q ss_pred             eeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756          163 TTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       163 ~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~  228 (321)
                      .... .....+.|||||++|+.....   ..+..+.+|+.++...... ....+..+.|+|++..++-
T Consensus       329 lt~~~~~~~~~~~SpdG~~ia~~~~~---~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~  393 (435)
T PRK05137        329 ISFGGGRYSTPVWSPRGDLIAFTKQG---GGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMF  393 (435)
T ss_pred             eecCCCcccCeEECCCCCEEEEEEcC---CCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEE
Confidence            2222 245568999999999987731   0124577788765433211 1124567899999887653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=2.8e-15  Score=142.78  Aligned_cols=204  Identities=15%  Similarity=0.236  Sum_probs=156.9

Q ss_pred             CceEEEEEcCCcCCCCceeeeec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      -|.|.||++.+   .+.+..... ....+-.+.|+   ..++...+    +.     |....+.+........ +...|.
T Consensus       238 ~g~v~iwD~~~---~k~~~~~~~~h~~rvg~laW~---~~~lssGs----r~-----~~I~~~dvR~~~~~~~-~~~~H~  301 (484)
T KOG0305|consen  238 DGTVQIWDVKE---QKKTRTLRGSHASRVGSLAWN---SSVLSSGS----RD-----GKILNHDVRISQHVVS-TLQGHR  301 (484)
T ss_pred             CCeEEEEehhh---ccccccccCCcCceeEEEecc---CceEEEec----CC-----CcEEEEEEecchhhhh-hhhccc
Confidence            57899999998   677888887 78888899999   22333211    11     3333344433332222 234589


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|+.++|++|+.+||.  |..|..+.|||. ...+++.+  |.+.|..++|+|.-+-|+..|-|..|+.|+|||..+++
T Consensus       302 qeVCgLkws~d~~~lAS--GgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  302 QEVCGLKWSPDGNQLAS--GGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             ceeeeeEECCCCCeecc--CCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence            99999999999999998  788999999999 44566666  89999999999977766666667789999999999999


Q ss_pred             EEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee--EEeccCceEEEEEecCCCCCCCC
Q 020756          160 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       160 ~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++...... .|..+.||+..+-|+++...    .++.|.||++... ++  ..+|...|..++|+|++..+++.
T Consensus       380 ~i~~vdtgsQVcsL~Wsk~~kEi~sthG~----s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~  449 (484)
T KOG0305|consen  380 RIDSVDTGSQVCSLIWSKKYKELLSTHGY----SENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG  449 (484)
T ss_pred             EecccccCCceeeEEEcCCCCEEEEecCC----CCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence            98877664 88999999998777776643    4889999999432 22  66788999999999999888876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=1.9e-15  Score=137.63  Aligned_cols=202  Identities=14%  Similarity=0.219  Sum_probs=137.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC--C
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~--~   81 (321)
                      +...-||.+-.+.--+...+.--....+.-+.||||.+||+.+...+            .+.+++++.+ +......  +
T Consensus       245 D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e------------~~~lwDv~tg-d~~~~y~~~~  311 (519)
T KOG0293|consen  245 DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE------------VLSLWDVDTG-DLRHLYPSGL  311 (519)
T ss_pred             CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH------------heeeccCCcc-hhhhhcccCc
Confidence            45677888876321111233333456777899999999999873221            1566777665 3333333  3


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...+.+++|.|||..|++  |..|+.+..||++++.....   ....+.+++..+||+++++.+   .|..|.+|++++.
T Consensus       312 ~~S~~sc~W~pDg~~~V~--Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  312 GFSVSSCAWCPDGFRFVT--GSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT---VDKKIRLYNREAR  386 (519)
T ss_pred             CCCcceeEEccCCceeEe--cCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe---cccceeeechhhh
Confidence            478999999999999877  78889999999999876666   234588999999999999886   5566666665544


Q ss_pred             eEEEeeeC-CCeeeEEEccCC---------------------------------------------CEEEEEEcCCceee
Q 020756          159 KQLGTTRA-ECSVTSEWSPDG---------------------------------------------RYFMTATTAPRLQI  192 (321)
Q Consensus       159 ~~i~~~~~-~~~~~~~wSpdG---------------------------------------------~~l~t~~s~~rl~~  192 (321)
                      ........ +.+++++.|-||                                             .++++|+      .
T Consensus       387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS------E  460 (519)
T KOG0293|consen  387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS------E  460 (519)
T ss_pred             hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC------C
Confidence            33322211 234444444444                                             4455555      5


Q ss_pred             cCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756          193 DNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       193 d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      |..|+|||. +|.++  ..+|...|..++|+|..+..+..
T Consensus       461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS  500 (519)
T KOG0293|consen  461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS  500 (519)
T ss_pred             CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence            888888887 56666  66788899999999988888765

>PTZ00421 coronin; Provisional

Probab=99.67  E-value=9.1e-15  Score=142.48  Aligned_cols=139  Identities=20%  Similarity=0.321  Sum_probs=110.5

Q ss_pred             cCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCc--------eeEEe--CCcCeeeEEEcCCC-CeEEEEccCCC
Q 020756           79 LRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR--------PILEL--GSGPYNTVRWNPKG-KFLCLAGFGNL  146 (321)
Q Consensus        79 l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~--------~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~  146 (321)
                      ..|.++|.+++|+| +++.|+++  ..|++|.+||+...        ++..+  |...+.++.|+|++ ++|++++   .
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSg--S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~  146 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTA--SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---A  146 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEE--eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---C
Confidence            46899999999999 78888774  67899999998432        34455  77889999999986 6888888   8


Q ss_pred             CCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE--eccC-ceEEEEEe
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMFD-KLFQAEWK  220 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~--~~~~-~~~~~~w~  220 (321)
                      |+.|+|||+++++.+..+..|  .+.+++|+|||.+|++++      .|+.|+|||+. ++.+..  .|.. ....+.|.
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS------KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec------CCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence            999999999999888888765  688999999999999998      49999999984 555533  3333 23456788


Q ss_pred             cCCCCCCC
Q 020756          221 PVSPDKFG  228 (321)
Q Consensus       221 P~~~~~~~  228 (321)
                      |+...+++
T Consensus       221 ~~~~~ivt  228 (493)
T PTZ00421        221 KRKDLIIT  228 (493)
T ss_pred             CCCCeEEE
Confidence            87666553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.1e-14  Score=140.47  Aligned_cols=192  Identities=13%  Similarity=0.167  Sum_probs=129.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.+|++..   ++. .....++.....+.|||||+.|++....+         |...||.++..+.....++ .+.+.
T Consensus       228 ~~i~i~dl~t---g~~-~~l~~~~g~~~~~~wSPDG~~La~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~  293 (429)
T PRK01742        228 SQLVVHDLRS---GAR-KVVASFRGHNGAPAFSPDGSRLAFASSKD---------GVLNIYVMGANGGTPSQLT-SGAGN  293 (429)
T ss_pred             cEEEEEeCCC---Cce-EEEecCCCccCceeECCCCCEEEEEEecC---------CcEEEEEEECCCCCeEeec-cCCCC
Confidence            4688888866   332 22333455556789999999998864211         4456899988766444443 34566


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeC--CCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~--~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      +.++.|+|||+.|+++. ..++...||++  .+.....+.... ..+.|||||++|++.+   . ..+.+||+.+++...
T Consensus       294 ~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~---~-~~i~~~Dl~~g~~~~  367 (429)
T PRK01742        294 NTEPSWSPDGQSILFTS-DRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMIN---G-DNVVKQDLTSGSTEV  367 (429)
T ss_pred             cCCEEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEc---C-CCEEEEECCCCCeEE
Confidence            78999999999988864 34455566654  444333332222 4578999999999986   3 357779998886543


Q ss_pred             eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe---ecCceeEEe--ccCceEEEEEecC
Q 020756          163 TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH---HNGSLFFKK--MFDKLFQAEWKPV  222 (321)
Q Consensus       163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~---~~g~~l~~~--~~~~~~~~~w~P~  222 (321)
                      .........+.|||||++|++++.      ++...+|+   .+|..+...  +...+.+++|+|.
T Consensus       368 lt~~~~~~~~~~sPdG~~i~~~s~------~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        368 LSSTFLDESPSISPNGIMIIYSST------QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ecCCCCCCCceECCCCCEEEEEEc------CCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            333334456789999999999985      66666665   467766433  4567888999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.66  E-value=9.1e-16  Score=142.97  Aligned_cols=184  Identities=18%  Similarity=0.319  Sum_probs=132.5

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-ec---CCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL---RKEGPVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-~l---~~~~~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      ..-.|+|+.....+.++.         .|.-.||.++-...+...+ +.   .+.-++..|+|+|||..||.  |+.||.
T Consensus       272 t~g~whP~~k~~FlT~s~---------DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa--gc~DGS  340 (641)
T KOG0772|consen  272 TCGCWHPDNKEEFLTCSY---------DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA--GCLDGS  340 (641)
T ss_pred             eccccccCcccceEEecC---------CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh--cccCCc
Confidence            345699988877666532         2444444443222211111 11   13557899999999999887  678999


Q ss_pred             EEEEeCCCc---ee---EEeCCc--CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeC----CCeeeEEE
Q 020756          108 ATIFNKKCR---PI---LELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA----ECSVTSEW  174 (321)
Q Consensus       108 i~i~d~~~~---~~---~~~~~~--~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~----~~~~~~~w  174 (321)
                      |.+|+....   +.   ..-|..  .+.+|.||+||++|++-|   .|.++++||+++. +++....+    ...+.++|
T Consensus       341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg---~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F  417 (641)
T KOG0772|consen  341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG---FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF  417 (641)
T ss_pred             eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc---CCCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence            999997432   22   233544  899999999999999999   8889999999976 45544433    36778999


Q ss_pred             ccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEeccC--ceEEEEEecCCCCCCCC
Q 020756          175 SPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD--KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~~~--~~~~~~w~P~~~~~~~~  229 (321)
                      |||.++|+|+++.++-...+.+.+||.. -+.+++....  .|..+.|+|.-..|+..
T Consensus       418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g  475 (641)
T KOG0772|consen  418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG  475 (641)
T ss_pred             CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence            9999999999999887666778888863 3455665554  78889999988888754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.66  E-value=2.1e-14  Score=148.58  Aligned_cols=200  Identities=15%  Similarity=0.213  Sum_probs=146.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|+| +|..|+.. +.|         |.  +.+++.... .....+.
T Consensus       552 ~~Dg~v~lWd~~~---~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg-s~D---------g~--v~iWd~~~~-~~~~~~~  615 (793)
T PLN00181        552 NFEGVVQVWDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASG-SDD---------GS--VKLWSINQG-VSIGTIK  615 (793)
T ss_pred             eCCCeEEEEECCC---CeEEEEecCCCCCEEEEEEcCCCCCEEEEE-cCC---------CE--EEEEECCCC-cEEEEEe
Confidence            4578999999988   677777777777888999997 56665553 211         22  445555433 2333334


Q ss_pred             CCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           81 KEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        81 ~~~~v~~~~ws-P~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      ....|.++.|+ ++|..|++  |..++.|++||++..  .+..+  |...+..+.|+ ++.+|++++   .|+.|.|||+
T Consensus       616 ~~~~v~~v~~~~~~g~~lat--gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s---~D~~ikiWd~  689 (793)
T PLN00181        616 TKANICCVQFPSESGRSLAF--GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS---TDNTLKLWDL  689 (793)
T ss_pred             cCCCeEEEEEeCCCCCEEEE--EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE---CCCEEEEEeC
Confidence            45689999995 57888887  567899999999643  34444  67889999997 788999998   8999999999


Q ss_pred             CC------CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee--E-------------Eecc
Q 020756          156 VD------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--F-------------KKMF  211 (321)
Q Consensus       156 ~~------~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~-------------~~~~  211 (321)
                      ..      ...+..+.+|  .+..+.|+|+|.+|++++.      |+.++||+.... .+  +             ..+.
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~  763 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE------TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS  763 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC------CCEEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence            74      3567777776  5677999999999999994      999999997422 11  1             1122


Q ss_pred             CceEEEEEecCCCCCCCC
Q 020756          212 DKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       212 ~~~~~~~w~P~~~~~~~~  229 (321)
                      ..+.++.|+|+...+++.
T Consensus       764 ~~V~~v~ws~~~~~lva~  781 (793)
T PLN00181        764 QFISSVCWRGQSSTLVAA  781 (793)
T ss_pred             cEEEEEEEcCCCCeEEEe
Confidence            358999999998877764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.3e-14  Score=138.40  Aligned_cols=204  Identities=13%  Similarity=0.155  Sum_probs=135.6

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.+|++..   ++ ..+.+.++.......|||||+.|++..+.+         |...||.++..+....++. .+.+.
T Consensus       226 ~~i~~~dl~~---g~-~~~l~~~~g~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt-~~~~~  291 (435)
T PRK05137        226 PRVYLLDLET---GQ-RELVGNFPGMTFAPRFSPDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLT-DSPAI  291 (435)
T ss_pred             CEEEEEECCC---Cc-EEEeecCCCcccCcEECCCCCEEEEEEecC---------CCceEEEEECCCCceEEcc-CCCCc
Confidence            5788888866   33 344555666677889999999998864321         3456899998776544443 34455


Q ss_pred             eEEEEECcCCCEEEEEEcc-CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           85 VHDVQWSYSGSEFAVVYGF-MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~-~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      .....|+|||+.|++.... ....|.++|+.+.....+  +......+.|||||+.|++.........|.+||+..+...
T Consensus       292 ~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~  371 (435)
T PRK05137        292 DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER  371 (435)
T ss_pred             cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence            6789999999999987532 123788889877655555  4455677899999999999874333457899998655332


Q ss_pred             EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecC
Q 020756          162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPV  222 (321)
Q Consensus       162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~  222 (321)
                      .......+..+.|||||++|+..+..........+.+++++|...... ....+...+|+|.
T Consensus       372 ~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        372 ILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL  433 (435)
T ss_pred             eccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence            222223556789999999999877521100013577778877654322 2234667788774

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=7.7e-15  Score=141.73  Aligned_cols=208  Identities=13%  Similarity=0.116  Sum_probs=162.2

Q ss_pred             CCCceEEEEEcCCcC-CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee--
Q 020756            2 GSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~-~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~--   78 (321)
                      +.+-+|+||.+.+.. ..-++++.+-+......+..+..|--+++.++.|         +...+|.+.........+.  
T Consensus       384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D---------~tlK~W~l~~s~~~~~~~~~~  454 (775)
T KOG0319|consen  384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD---------CTLKLWDLPKSKETAFPIVLT  454 (775)
T ss_pred             cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC---------ceEEEecCCCcccccccceeh
Confidence            467799999995421 1235677777777888888899888888876543         2222333322111111222  


Q ss_pred             -----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           79 -----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        79 -----l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                           ..|+..|++++.+|+.+.||+  |.+|.+++||++.. ....++  |...+.++.|+|..+.|++++   .|.+|
T Consensus       455 ~~~t~~aHdKdIN~Vaia~ndkLiAT--~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S---gD~Tv  529 (775)
T KOG0319|consen  455 CRYTERAHDKDINCVAIAPNDKLIAT--GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS---GDKTV  529 (775)
T ss_pred             hhHHHHhhcccccceEecCCCceEEe--cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc---CCceE
Confidence                 247889999999999999999  58899999999963 344455  888999999999999999999   99999


Q ss_pred             EEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-cee--EEeccCceEEEEEecCCCC
Q 020756          151 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       151 ~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~~~~  225 (321)
                      +||.+.++.|+.++++|  .+..+.|-.+|..|+++++      |+-++||++.. +++  +-.|.+.||.++-+|....
T Consensus       530 KIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a------dGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~  603 (775)
T KOG0319|consen  530 KIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA------DGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDM  603 (775)
T ss_pred             EEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC------CCcEEEEeccchhhhhhhhhccceeEEEeecCccce
Confidence            99999999999999988  5778999999999999996      99999999954 444  5578899999999998886


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      +++.
T Consensus       604 ~~tg  607 (775)
T KOG0319|consen  604 FVTG  607 (775)
T ss_pred             eEec
Confidence            6654

>PTZ00420 coronin; Provisional

Probab=99.65  E-value=6.5e-14  Score=137.75  Aligned_cols=203  Identities=11%  Similarity=0.210  Sum_probs=135.8

Q ss_pred             CCCceEEEEEcCCcCC-----CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee
Q 020756            2 GSPASVQIYACGKDLQ-----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL   76 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~-----~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~   76 (321)
                      |..+.|+||+++....     ..++.....+...+..+.|+|++..+++.++.|         +.  |.++++... ...
T Consensus        94 S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D---------gt--IrIWDl~tg-~~~  161 (568)
T PTZ00420         94 SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD---------SF--VNIWDIENE-KRA  161 (568)
T ss_pred             eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC---------Ce--EEEEECCCC-cEE
Confidence            5688999999987210     013334445566788999999999887654322         22  455555444 233


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeee-----EEEcCCCCeEEEEccCC-CC
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNT-----VRWNPKGKFLCLAGFGN-LP  147 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~-----~~~sPdG~~l~~~g~~n-~~  147 (321)
                      ..+.+...|.+++|+|+|..|++.  +.++.+.|||++.. .+.++  |.+.+..     ..|++++.+|+++|+.. .+
T Consensus       162 ~~i~~~~~V~SlswspdG~lLat~--s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~  239 (568)
T PTZ00420        162 FQINMPKKLSSLKWNIKGNLLSGT--CVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNM  239 (568)
T ss_pred             EEEecCCcEEEEEECCCCCEEEEE--ecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence            444567889999999999998874  56889999999654 55555  5554433     34569999999998543 23


Q ss_pred             CcEEEEECCC-CeEEEeeeCC---CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCceeEEe----ccCceEEEE
Q 020756          148 GDMAFWDYVD-GKQLGTTRAE---CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK----MFDKLFQAE  218 (321)
Q Consensus       148 g~i~iwD~~~-~~~i~~~~~~---~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~----~~~~~~~~~  218 (321)
                      ++|.|||+++ .+.+.....+   .+....|.+ +|.++++|.      .|+.+++|++....++..    +......+.
T Consensus       240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk------GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~  313 (568)
T PTZ00420        240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK------GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFG  313 (568)
T ss_pred             cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE------CCCeEEEEEccCCcEEeecccccCCCccceE
Confidence            5899999985 4556554433   233345545 588888887      499999999954433221    223566788


Q ss_pred             EecCCC
Q 020756          219 WKPVSP  224 (321)
Q Consensus       219 w~P~~~  224 (321)
                      |.|...
T Consensus       314 f~Pkr~  319 (568)
T PTZ00420        314 FLPKQI  319 (568)
T ss_pred             Eccccc
Confidence            888654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.65  E-value=9.4e-15  Score=128.39  Aligned_cols=189  Identities=13%  Similarity=0.167  Sum_probs=152.3

Q ss_pred             CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeecCCCCCeEEEEECcCCCEE
Q 020756           19 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEF   97 (321)
Q Consensus        19 ~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l~~~~~v~~~~wsP~g~~l   97 (321)
                      .++-++.-.++.+..+.|+|+|+.++...            -...++++++.|.-+- .+.-.|.++|.++.|.+|++.+
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG------------~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i  105 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGG------------SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHI  105 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecC------------CcceEEEEeccccccceeeeccccceeEeeeeccCCCEE
Confidence            45556666788999999999999987631            1234777777765332 2333589999999999999999


Q ss_pred             EEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEE
Q 020756           98 AVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSE  173 (321)
Q Consensus        98 ~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~  173 (321)
                      +.+  ..|.++..||.. ++.++.+  |..-+|.+.-+--|..|+.++  ..|+++++||+++...+.+++.. .++.+.
T Consensus       106 ~S~--gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg--sdD~t~kl~D~R~k~~~~t~~~kyqltAv~  181 (338)
T KOG0265|consen  106 LSC--GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG--SDDGTLKLWDIRKKEAIKTFENKYQLTAVG  181 (338)
T ss_pred             EEe--cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec--CCCceEEEEeecccchhhccccceeEEEEE
Confidence            997  458899999995 4455555  777888888565677777665  47899999999999999988765 789999


Q ss_pred             EccCCCEEEEEEcCCceeecCcEEEEee---cCceeEEeccCceEEEEEecCCCCCCCC
Q 020756          174 WSPDGRYFMTATTAPRLQIDNGIKIFHH---NGSLFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~---~g~~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      |.-++.-+.+++      .||.|++||+   .+..+..+|.+.|..+.-+|.+..+++.
T Consensus       182 f~d~s~qv~sgg------Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsn  234 (338)
T KOG0265|consen  182 FKDTSDQVISGG------IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSN  234 (338)
T ss_pred             ecccccceeecc------ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccc
Confidence            999999999999      6999999999   4555688899999999999999988876

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=4.6e-14  Score=136.08  Aligned_cols=208  Identities=11%  Similarity=0.010  Sum_probs=133.6

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.|+++..    ....+.+........+.|||||+.|+++..    ..     +...||+++..++....+. ...+.
T Consensus       179 ~~l~~~d~dg----~~~~~lt~~~~~~~~p~wSPDG~~la~~s~----~~-----g~~~i~i~dl~~G~~~~l~-~~~~~  244 (429)
T PRK03629        179 YELRVSDYDG----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTF----ES-----GRSALVIQTLANGAVRQVA-SFPRH  244 (429)
T ss_pred             eeEEEEcCCC----CCCEEeecCCCceeeeEEcCCCCEEEEEEe----cC-----CCcEEEEEECCCCCeEEcc-CCCCC
Confidence            3555555543    223334445556778999999999998642    11     3345888887765433332 33455


Q ss_pred             eEEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           85 VHDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      +.++.|||||+.|+++.. .....|.+||+++..+..+  +......+.|+|||+.|++++.......|+++|+.+++..
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~  324 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ  324 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence            678999999999998632 2223688999977656555  3445678999999999998773222236777788776433


Q ss_pred             Ee-eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEec-cCceEEEEEecCCCCCCCC
Q 020756          162 GT-TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM-FDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       162 ~~-~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~-~~~~~~~~w~P~~~~~~~~  229 (321)
                      .. ........+.|||||++|++.....   ....+.+||+.+..+.... ........|+|++..++-.
T Consensus       325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~---g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        325 RITWEGSQNQDADVSSDGKFMVMVSSNG---GQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEEccC---CCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEE
Confidence            22 2223456789999999999877420   1235778888554332221 1223468899999877754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=3.1e-14  Score=137.46  Aligned_cols=199  Identities=12%  Similarity=0.129  Sum_probs=131.9

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.+|++..   ++ ....+.++.....+.|||||+.|++..+.+         |...||.++..++...++. .+.+.
T Consensus       228 ~~l~~~dl~~---g~-~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~---------g~~~Iy~~d~~~g~~~~lt-~~~~~  293 (433)
T PRK04922        228 SAIYVQDLAT---GQ-RELVASFRGINGAPSFSPDGRRLALTLSRD---------GNPEIYVMDLGSRQLTRLT-NHFGI  293 (433)
T ss_pred             cEEEEEECCC---CC-EEEeccCCCCccCceECCCCCEEEEEEeCC---------CCceEEEEECCCCCeEECc-cCCCC
Confidence            4577778765   33 233444555556789999999998864321         3456899988776444433 23345


Q ss_pred             eEEEEECcCCCEEEEEEccCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ...++|+|||++|++... ..+  .+.++|+.+.....+  +......+.|||||++|++....+....|++||+.+++.
T Consensus       294 ~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        294 DTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             ccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence            568999999999998743 233  577778765544433  333445789999999999876322234799999988765


Q ss_pred             EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEec
Q 020756          161 LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKP  221 (321)
Q Consensus       161 i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P  221 (321)
                      ...........+.|||||++|+..+..   .....+.+++.+|......  ....+...+|+|
T Consensus       373 ~~Lt~~~~~~~p~~spdG~~i~~~s~~---~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        373 RTLTPGSLDESPSFAPNGSMVLYATRE---GGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EECCCCCCCCCceECCCCCEEEEEEec---CCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence            433333344567999999999988852   1134577888888765333  335677788887

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.64  E-value=2.7e-15  Score=139.86  Aligned_cols=202  Identities=15%  Similarity=0.221  Sum_probs=132.0

Q ss_pred             CCceEEEEEcCCcCCCCce-eeeeccc---CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-----
Q 020756            3 SPASVQIYACGKDLQSQPL-ARRSFFR---CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-----   73 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i-~~~~~f~---~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-----   73 (321)
                      .+-.|++|++.-..  ... +-+.+-.   ..+..+.||+.|..||++.            |.....+++.+|-.     
T Consensus       187 ~Dy~v~~wDf~gMd--as~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs------------g~aqakl~DRdG~~~~e~~  252 (641)
T KOG0772|consen  187 LDYTVKFWDFQGMD--ASMRSFRQLQPCETHQINSLQYSVTGDQILVVS------------GSAQAKLLDRDGFEIVEFS  252 (641)
T ss_pred             ccceEEEEeccccc--ccchhhhccCcccccccceeeecCCCCeEEEEe------------cCcceeEEccCCceeeeee
Confidence            44568899987532  111 1111111   2345789999999999874            22223333333321     


Q ss_pred             ---eeee----ecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCC--ceeEEe-------CCcCeeeEEEcCCCC
Q 020756           74 ---EGLV----PLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--RPILEL-------GSGPYNTVRWNPKGK  136 (321)
Q Consensus        74 ---~~~v----~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~--~~~~~~-------~~~~~~~~~~sPdG~  136 (321)
                         ..++    +-.|-..+++.+|+|+.+ .|+++  ..|++++|||+..  .+...|       ..-++.++.|+|||.
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~  330 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK  330 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence               1111    123667789999999877 45554  4589999999842  223222       234678899999999


Q ss_pred             eEEEEccCCCCCcEEEEECCCCe---EEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC--ceeE
Q 020756          137 FLCLAGFGNLPGDMAFWDYVDGK---QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--SLFF  207 (321)
Q Consensus       137 ~l~~~g~~n~~g~i~iwD~~~~~---~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~l~  207 (321)
                      .|+.+.   .||.|.+||..+..   .+..-.+|    .++++.||+||++|++-+      .|+.+++||+..  +.|+
T Consensus       331 ~iAagc---~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  331 LIAAGC---LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLKVWDLRQFKKPLN  401 (641)
T ss_pred             hhhhcc---cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCceeeeeccccccchh
Confidence            999998   99999999975441   12222222    799999999999999988      499999999942  3331


Q ss_pred             --Ee--ccCceEEEEEecCCCCCCCC
Q 020756          208 --KK--MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       208 --~~--~~~~~~~~~w~P~~~~~~~~  229 (321)
                        .+  ..-.-.++.|+|+...|++.
T Consensus       402 ~~tgL~t~~~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  402 VRTGLPTPFPGTDCCFSPDDKLILTG  427 (641)
T ss_pred             hhcCCCccCCCCccccCCCceEEEec
Confidence              11  12244578999998877754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=9.7e-15  Score=139.11  Aligned_cols=179  Identities=15%  Similarity=0.184  Sum_probs=138.0

Q ss_pred             CCceEEEEEcCCcCCCCceee-eecccCccceEEeCCCCCeeEEEEEecccCCCceeeccee-EEEEEcCCCceeeeecC
Q 020756            3 SPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK-LNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~-~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~-l~~l~~~g~~~~~v~l~   80 (321)
                      ..+.|..++++.   .+.+.. ...+..++|.++|++||.+++.-             |.++ +++++.........-..
T Consensus       278 r~~~I~~~dvR~---~~~~~~~~~~H~qeVCgLkws~d~~~lASG-------------gnDN~~~Iwd~~~~~p~~~~~~  341 (484)
T KOG0305|consen  278 RDGKILNHDVRI---SQHVVSTLQGHRQEVCGLKWSPDGNQLASG-------------GNDNVVFIWDGLSPEPKFTFTE  341 (484)
T ss_pred             CCCcEEEEEEec---chhhhhhhhcccceeeeeEECCCCCeeccC-------------CCccceEeccCCCccccEEEec
Confidence            456788889988   444433 66678999999999999999763             2222 34444433322233345


Q ss_pred             CCCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCC-CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           81 KEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        81 ~~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      |...|..++|+|- ...||+..|..|+.|++||.. +..+..+ ....|..+.|+|..+.|+++. |..+..|.||++.+
T Consensus       342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPS  420 (484)
T ss_pred             cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccc
Confidence            8999999999995 557777767889999999985 4566666 467899999999998777752 34567999999999


Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      .+.+..+.+|  -+..++|||||.+|++++.      |.++++|++-+.
T Consensus       421 ~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~------DETlrfw~~f~~  463 (484)
T KOG0305|consen  421 MKLVAELLGHTSRVLYLALSPDGETIVTGAA------DETLRFWNLFDE  463 (484)
T ss_pred             cceeeeecCCcceeEEEEECCCCCEEEEecc------cCcEEeccccCC
Confidence            9999999888  6888999999999999995      999999998654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.63  E-value=3.6e-14  Score=124.38  Aligned_cols=171  Identities=15%  Similarity=0.193  Sum_probs=138.2

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      +....+|+|++   ++.+....-+..|+..+..+| +++.++...   .|++         -+++++....-.+....|+
T Consensus       165 D~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~---cD~~---------aklWD~R~~~c~qtF~ghe  229 (343)
T KOG0286|consen  165 DMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG---CDKS---------AKLWDVRSGQCVQTFEGHE  229 (343)
T ss_pred             CceEEEEEccc---ceEEEEecCCcccEEEEecCCCCCCeEEecc---cccc---------eeeeeccCcceeEeecccc
Confidence            45788999999   888888888899999999999 666655431   2221         2344544443344445699


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ..|+++.|.|+|.-|++  |..|++.++||++.. .+..+    -..++++++||-.|++|+.+.   .|.++.+||.-.
T Consensus       230 sDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy---~d~~c~vWDtlk  304 (343)
T KOG0286|consen  230 SDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY---DDFTCNVWDTLK  304 (343)
T ss_pred             cccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee---cCCceeEeeccc
Confidence            99999999999988888  788999999999765 44444    256889999999999999886   789999999999


Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ++.+..+.+|  .++++..+|||--+++++      =|..++||.
T Consensus       305 ~e~vg~L~GHeNRvScl~~s~DG~av~TgS------WDs~lriW~  343 (343)
T KOG0286|consen  305 GERVGVLAGHENRVSCLGVSPDGMAVATGS------WDSTLRIWA  343 (343)
T ss_pred             cceEEEeeccCCeeEEEEECCCCcEEEecc------hhHheeecC
Confidence            9999999888  699999999999998888      499999994

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=5.5e-14  Score=135.72  Aligned_cols=206  Identities=13%  Similarity=0.066  Sum_probs=133.1

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|.||+...    ....+.+..+.....+.|+|||+.|+++...    .     +...||.++..++....+. ...+..
T Consensus       185 ~l~i~D~~g----~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~----~-----~~~~l~~~dl~~g~~~~l~-~~~g~~  250 (433)
T PRK04922        185 ALQVADSDG----YNPQTILRSAEPILSPAWSPDGKKLAYVSFE----R-----GRSAIYVQDLATGQRELVA-SFRGIN  250 (433)
T ss_pred             EEEEECCCC----CCceEeecCCCccccccCCCCCCEEEEEecC----C-----CCcEEEEEECCCCCEEEec-cCCCCc
Confidence            455666533    3344455555667889999999999986321    1     2345888888766443333 334556


Q ss_pred             EEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           86 HDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      ..+.|||||+.+++... .....|.+||+.+..+..+  +......+.|+|||++|++++.......|+++|+.+++...
T Consensus       251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~  330 (433)
T PRK04922        251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER  330 (433)
T ss_pred             cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            68999999999887532 2234799999977666665  33344578999999999988632222358888887764322


Q ss_pred             e-eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756          163 T-TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       163 ~-~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~  228 (321)
                      . +.......++|||||++|+..+...   .+..+.+|++.+..+... +........|+|++..++-
T Consensus       331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~---~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~  395 (433)
T PRK04922        331 LTFQGNYNARASVSPDGKKIAMVHGSG---GQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLY  395 (433)
T ss_pred             eecCCCCccCEEECCCCCEEEEEECCC---CceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEE
Confidence            2 2333455689999999999876310   123588899855433221 2223446799999887653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.63  E-value=1.6e-14  Score=127.02  Aligned_cols=202  Identities=12%  Similarity=0.248  Sum_probs=150.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |.+-+|+.|++.+   ++.+........-+..+.=+.-|..|+...+.  |       |+-.||.+.  . .+....+..
T Consensus       109 gtDk~v~~wD~~t---G~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd--D-------~t~kl~D~R--~-k~~~~t~~~  173 (338)
T KOG0265|consen  109 GTDKTVRGWDAET---GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD--D-------GTLKLWDIR--K-KEAIKTFEN  173 (338)
T ss_pred             cCCceEEEEeccc---ceeeehhccccceeeecCccccCCeEEEecCC--C-------ceEEEEeec--c-cchhhcccc
Confidence            5677899999999   77776666554444444433344444443221  1       333344432  2 234444455


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      +..++++.|..++.++..  |.-|+.|++||++. +....+  |...|..+.-+|+|.++++-+   +|.++.+||++-.
T Consensus       174 kyqltAv~f~d~s~qv~s--ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~  248 (338)
T KOG0265|consen  174 KYQLTAVGFKDTSDQVIS--GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPF  248 (338)
T ss_pred             ceeEEEEEecccccceee--ccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc---ccceEEEEEeccc
Confidence            778999999999999877  68889999999954 344444  788999999999999999998   9999999998843


Q ss_pred             ----eEEEeeeCC------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee--EEeccCceEEEEEecCCCC
Q 020756          159 ----KQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       159 ----~~i~~~~~~------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P~~~~  225 (321)
                          +++..+.++      +...++|||+++++.+++      .|..+++||...+ .+  ..+|...|..+.|+|..+.
T Consensus       249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags------~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS------ADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI  322 (338)
T ss_pred             CCCCceEEEeecchhhhhhhcceeeccCCCCcccccc------ccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence                568877764      455689999999998888      4999999999774 44  4468889999999999988


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      +++.
T Consensus       323 ils~  326 (338)
T KOG0265|consen  323 ILSC  326 (338)
T ss_pred             EEEe
Confidence            8765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=8.7e-14  Score=134.10  Aligned_cols=197  Identities=13%  Similarity=0.076  Sum_probs=125.5

Q ss_pred             CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEE
Q 020756           19 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFA   98 (321)
Q Consensus        19 ~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~   98 (321)
                      ....+..........+.|||||+.|+++...    .     +...||++++.++....+. ...+.+..+.|||||+.|+
T Consensus       186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~----~-----~~~~I~~~dl~~g~~~~l~-~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFE----S-----KKPVVYVHDLATGRRRVVA-NFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             CCceEeccCCCCcccceEcCCCCEEEEEEcc----C-----CCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEEE
Confidence            4444445556667789999999999886421    1     2345888888766444443 2446677899999999998


Q ss_pred             EEEccCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE-eeeCCCeeeEE
Q 020756           99 VVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTRAECSVTSE  173 (321)
Q Consensus        99 ~~~g~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~-~~~~~~~~~~~  173 (321)
                      +... .++  .|.++|+.+.....+  +......+.|||||+.|++.+.......|+++|+.+++... ++.........
T Consensus       256 ~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~  334 (427)
T PRK02889        256 VALS-RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPR  334 (427)
T ss_pred             EEEc-cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceE
Confidence            7532 234  566667766655555  33445678999999999987622112345555665553222 23333445689


Q ss_pred             EccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCCC
Q 020756          174 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                      |||||++|+..+...   .+..+.+||+.+...... .........|+|++..++-.
T Consensus       335 ~SpDG~~Ia~~s~~~---g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        335 ISPDGKLLAYISRVG---GAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYA  388 (427)
T ss_pred             ECCCCCEEEEEEccC---CcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEE
Confidence            999999999877411   123588999865433221 11233568999999877644

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.63  E-value=1.1e-14  Score=145.93  Aligned_cols=139  Identities=21%  Similarity=0.368  Sum_probs=116.0

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------------------ceeEEe--CCcCeeeEEEcCCCCeE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------------------RPILEL--GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------------------~~~~~~--~~~~~~~~~~sPdG~~l  138 (321)
                      +|.+.|+++.|+|||++||+  |..|..+.||+...                   +.+..+  |...|..+.|+|++.+|
T Consensus        67 ~h~~sv~CVR~S~dG~~lAs--GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDGSYLAS--GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             cccCceeEEEECCCCCeEee--ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence            58999999999999999999  78888999998751                   122233  78899999999999999


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE--ecc--
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK--KMF--  211 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~--~~~--  211 (321)
                      ++++   .|+.|.|||..+++++..+.+|  -+-.+.|.|-|+|||+-+.      |..++||....-.+ +.  +++  
T Consensus       145 vS~s---~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd------Drtikvwrt~dw~i~k~It~pf~~  215 (942)
T KOG0973|consen  145 VSVS---LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD------DRTLKVWRTSDWGIEKSITKPFEE  215 (942)
T ss_pred             EEec---ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC------CceEEEEEcccceeeEeeccchhh
Confidence            9999   9999999999999999999988  5677999999999999995      99999999643222 11  122  


Q ss_pred             ----CceEEEEEecCCCCCCCC
Q 020756          212 ----DKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       212 ----~~~~~~~w~P~~~~~~~~  229 (321)
                          ..++-++|+||+..+.+.
T Consensus       216 ~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             CCCcceeeecccCCCcCeecch
Confidence                257889999999988865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=4.1e-14  Score=136.46  Aligned_cols=198  Identities=12%  Similarity=0.097  Sum_probs=126.6

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.||++..   . .....+........+.|||||+.|+++...    .     +...||.+++.++....+. ...+.
T Consensus       184 ~~i~i~d~dg---~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~----~-----~~~~i~i~dl~tg~~~~l~-~~~g~  249 (429)
T PRK01742        184 YEVRVADYDG---F-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFE----N-----KKSQLVVHDLRSGARKVVA-SFRGH  249 (429)
T ss_pred             EEEEEECCCC---C-CceEeccCCCccccceEcCCCCEEEEEEec----C-----CCcEEEEEeCCCCceEEEe-cCCCc
Confidence            5677777654   2 233344445567889999999999886321    0     2335888888665333332 23445


Q ss_pred             eEEEEECcCCCEEEEEEccCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC--CC
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DG  158 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~--~~  158 (321)
                      ...++|||||+.|+++.. .++  .|.++|+.+.....+  +......+.|+|||+.|++++.  .++...||+++  .+
T Consensus       250 ~~~~~wSPDG~~La~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~  326 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASS-KDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGG  326 (429)
T ss_pred             cCceeECCCCCEEEEEEe-cCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCC
Confidence            668999999999998642 344  455667766655555  4556778999999999988762  34556666543  33


Q ss_pred             eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee-EEeccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF-FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l-~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .. ..+.... ..+.|||||++|++.+       ...+.+||+.+. .. .... .....+.|+|++..++..
T Consensus       327 ~~-~~l~~~~-~~~~~SpDG~~ia~~~-------~~~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~  389 (429)
T PRK01742        327 GA-SLVGGRG-YSAQISADGKTLVMIN-------GDNVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYS  389 (429)
T ss_pred             Ce-EEecCCC-CCccCCCCCCEEEEEc-------CCCEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEE
Confidence            22 2222222 4578999999999887       345677898543 22 1112 133567899999877754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.62  E-value=4.9e-14  Score=121.87  Aligned_cols=203  Identities=19%  Similarity=0.274  Sum_probs=148.2

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      ...|+||++..+.-...... .-+..++-++.|.|...-+++.++           |...+-+++.... .+...+...+
T Consensus        41 dktv~v~n~e~~r~~~~~~~-~gh~~svdql~w~~~~~d~~atas-----------~dk~ir~wd~r~~-k~~~~i~~~~  107 (313)
T KOG1407|consen   41 DKTVSVWNLERDRFRKELVY-RGHTDSVDQLCWDPKHPDLFATAS-----------GDKTIRIWDIRSG-KCTARIETKG  107 (313)
T ss_pred             CCceEEEEecchhhhhhhcc-cCCCcchhhheeCCCCCcceEEec-----------CCceEEEEEeccC-cEEEEeeccC
Confidence            46789999987310111111 123457779999998888877654           3334556665443 3444445556


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      .-.-+.|+|+|.++++  ++.+..|.++|.+...+. .. -...++.+.|+-++.++++..   ..|.|.|...-..+.+
T Consensus       108 eni~i~wsp~g~~~~~--~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~---GlG~v~ILsypsLkpv  182 (313)
T KOG1407|consen  108 ENINITWSPDGEYIAV--GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN---GLGCVEILSYPSLKPV  182 (313)
T ss_pred             cceEEEEcCCCCEEEE--ecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec---CCceEEEEeccccccc
Confidence            6677999999999999  577889999998654433 33 355788999997777777665   5699999999889999


Q ss_pred             EeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCCCCc
Q 020756          162 GTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       162 ~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      .++.+|  +..+++|+|+|+|||+++.      |..+.|||++.-.+   .....=.|..++|+-++..|.+..
T Consensus       183 ~si~AH~snCicI~f~p~GryfA~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  183 QSIKAHPSNCICIEFDPDGRYFATGSA------DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             cccccCCcceEEEEECCCCceEeeccc------cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence            999998  6677999999999999994      99999999974322   223334788999999999988774

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=8.8e-14  Score=134.05  Aligned_cols=200  Identities=16%  Similarity=0.204  Sum_probs=129.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.+|++..   ++. .....++.......|||||+.|++....+         |...||.++..+....++. .+.+.
T Consensus       220 ~~I~~~dl~~---g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~  285 (427)
T PRK02889        220 PVVYVHDLAT---GRR-RVVANFKGSNSAPAWSPDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLT-QSSGI  285 (427)
T ss_pred             cEEEEEECCC---CCE-EEeecCCCCccceEECCCCCEEEEEEccC---------CCceEEEEECCCCCcEECC-CCCCC
Confidence            3577788866   433 33444555667899999999998864221         4456899988776444443 23445


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEE--eCCCceeEE--eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~--d~~~~~~~~--~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      +..+.|+|||++|+++. ...+...||  ++.+.....  ++........|||||++|++.+..+....|++||+.+++.
T Consensus       286 ~~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        286 DTEPFFSPDGRSIYFTS-DRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CcCeEEcCCCCEEEEEe-cCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            67789999999998863 333444444  554443332  3333344689999999999877322234799999988764


Q ss_pred             EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecC
Q 020756          161 LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPV  222 (321)
Q Consensus       161 i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~  222 (321)
                      ...........+.|||||++|+.++...   ....+.+.+.+|......  +...+...+|+|.
T Consensus       365 ~~lt~~~~~~~p~~spdg~~l~~~~~~~---g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        365 TALTDTTRDESPSFAPNGRYILYATQQG---GRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEccCCCCccCceECCCCCEEEEEEecC---CCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence            4333333446689999999999988521   112355566677655332  4457788899874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.61  E-value=2.2e-13  Score=140.97  Aligned_cols=203  Identities=14%  Similarity=0.176  Sum_probs=141.4

Q ss_pred             CCCceEEEEEcCCcC-CC----CceeeeecccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756            2 GSPASVQIYACGKDL-QS----QPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG   75 (321)
Q Consensus         2 g~p~~v~v~~~~~~~-~~----~~i~~~~~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~   75 (321)
                      |..+.|+||++.... .+    .++.... .......+.|++. +.+|+. +..         .|.  +.+++.......
T Consensus       502 g~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las-~~~---------Dg~--v~lWd~~~~~~~  568 (793)
T PLN00181        502 GVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVAS-SNF---------EGV--VQVWDVARSQLV  568 (793)
T ss_pred             eCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEE-EeC---------CCe--EEEEECCCCeEE
Confidence            568899999986411 01    1222222 2345668899986 455443 221         132  455555544333


Q ss_pred             eeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEc-CCCCeEEEEccCCCCCcEE
Q 020756           76 LVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWN-PKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        76 ~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~s-PdG~~l~~~g~~n~~g~i~  151 (321)
                      .....|.+.|.+++|+| ++..|++  +..|+.+.+||++. ..+..+ +...+.++.|+ ++|.+|++++   .++.|+
T Consensus       569 ~~~~~H~~~V~~l~~~p~~~~~L~S--gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs---~dg~I~  643 (793)
T PLN00181        569 TEMKEHEKRVWSIDYSSADPTLLAS--GSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS---ADHKVY  643 (793)
T ss_pred             EEecCCCCCEEEEEEcCCCCCEEEE--EcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe---CCCeEE
Confidence            33335889999999997 6778877  46789999999964 455555 45678899995 5799999998   899999


Q ss_pred             EEECCCCe-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-------Ccee--EEeccCceEEEEE
Q 020756          152 FWDYVDGK-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-------GSLF--FKKMFDKLFQAEW  219 (321)
Q Consensus       152 iwD~~~~~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-------g~~l--~~~~~~~~~~~~w  219 (321)
                      +||+++.+ .+..+.+|  .++.+.|+ ++.+|++++.      |+.|+|||+.       +..+  +..|...+..+.|
T Consensus       644 iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~  716 (793)
T PLN00181        644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL  716 (793)
T ss_pred             EEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence            99998765 45555555  68889997 7889999984      9999999985       2333  4456677888999


Q ss_pred             ecCCCCCCCC
Q 020756          220 KPVSPDKFGD  229 (321)
Q Consensus       220 ~P~~~~~~~~  229 (321)
                      +|++..+++.
T Consensus       717 s~~~~~lasg  726 (793)
T PLN00181        717 SVSDGYIATG  726 (793)
T ss_pred             cCCCCEEEEE
Confidence            9998777654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.61  E-value=3.6e-14  Score=142.23  Aligned_cols=212  Identities=16%  Similarity=0.174  Sum_probs=139.4

Q ss_pred             CCceEEEEEcCCcC---------CCCceeeeecccCccceEEeCCCCCeeEEEEEecc-cCCCceeecceeEEE-----E
Q 020756            3 SPASVQIYACGKDL---------QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-DKTNQSYYGESKLNY-----L   67 (321)
Q Consensus         3 ~p~~v~v~~~~~~~---------~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~-d~t~~s~~g~~~l~~-----l   67 (321)
                      .++.++||+.....         -.+++++..-+.+.+.-+.|++||+||+.-..... -...+...|...++-     -
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~  114 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK  114 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence            56677799887632         13456666667777888899999999988531100 000000000000000     0


Q ss_pred             EcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccC
Q 020756           68 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        68 ~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      ++..-....+-..|...|.|+.|+|++.+|+.+  ..|.+|.|||.+ .+.+..+  |.+.|..+.|.|-|+||++-+  
T Consensus       115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~--s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs--  190 (942)
T KOG0973|consen  115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV--SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS--  190 (942)
T ss_pred             ccceeeEEEEEecCCCccceeccCCCccEEEEe--cccceEEEEccccceeeeeeecccccccceEECCccCeeeeec--
Confidence            000001223345699999999999999999986  668899999985 3445555  889999999999999999998  


Q ss_pred             CCCCcEEEEECCCCeEEEeeeCC--------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCc
Q 020756          145 NLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDK  213 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i~~~~~~--------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~  213 (321)
                       .|.+|.||++.+..+.+.+..+        ....+.|||||.||+++...-  .....+.|.+-.+...   +.+|...
T Consensus       191 -dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n--~~~~~~~IieR~tWk~~~~LvGH~~p  267 (942)
T KOG0973|consen  191 -DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN--GGKSTIAIIERGTWKVDKDLVGHSAP  267 (942)
T ss_pred             -CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc--CCcceeEEEecCCceeeeeeecCCCc
Confidence             9999999998776555555443        345689999999999877521  0133566655533322   4556667


Q ss_pred             eEEEEEec
Q 020756          214 LFQAEWKP  221 (321)
Q Consensus       214 ~~~~~w~P  221 (321)
                      +..+.|+|
T Consensus       268 ~evvrFnP  275 (942)
T KOG0973|consen  268 VEVVRFNP  275 (942)
T ss_pred             eEEEEeCh
Confidence            77777766

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.61  E-value=6.2e-14  Score=128.49  Aligned_cols=202  Identities=11%  Similarity=0.141  Sum_probs=149.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |....+.+|+.|.   ++.+....-+.--.+.+.++++...++...            ....++.+.+-...+..+...|
T Consensus       238 G~d~~av~~d~~s---~q~l~~~~Gh~kki~~v~~~~~~~~v~~aS------------ad~~i~vws~~~~s~~~~~~~h  302 (506)
T KOG0289|consen  238 GEDKTAVLFDKPS---NQILATLKGHTKKITSVKFHKDLDTVITAS------------ADEIIRVWSVPLSSEPTSSRPH  302 (506)
T ss_pred             CCCCceEEEecch---hhhhhhccCcceEEEEEEeccchhheeecC------------CcceEEeeccccccCccccccc
Confidence            4455677777777   566655555555566677777766655421            1123455555444455666679


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CC---cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GS---GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~---~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      +++|+.+.-+|.|+||+.+  +.++...+.|++.. .+... +.   -.+.+..|+|||-.+.++.   .||.|+|||+.
T Consensus       303 ~~~V~~ls~h~tgeYllsA--s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt---~d~~vkiwdlk  377 (506)
T KOG0289|consen  303 EEPVTGLSLHPTGEYLLSA--SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT---PDGVVKIWDLK  377 (506)
T ss_pred             cccceeeeeccCCcEEEEe--cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC---CCceEEEEEcC
Confidence            9999999999999999996  66888888898644 33333 22   3478999999999888887   89999999999


Q ss_pred             CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce-eEE---eccCceEEEEEecCCCCCCCC
Q 020756          157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFK---KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~-l~~---~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++..+..|..|  .+..+.||-+|-||++++.      |..|+|||+..-. +..   ....++..+.+.+.+.++...
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad------d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAAD------DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEec------CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence            99999999888  7899999999999999994      7779999995322 222   122368889998888777655

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=4.6e-15  Score=135.12  Aligned_cols=143  Identities=19%  Similarity=0.265  Sum_probs=119.3

Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC----CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756           76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD  149 (321)
Q Consensus        76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~----~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~  149 (321)
                      ++-.+|.+.|--++||++|++||.+  ..|.+..+|++.    .+..+++  |..+|..+.||||.++|++||   .+-.
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsa--SkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg---~~e~  292 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASA--SKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG---FDEV  292 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeec--cCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC---chHh
Confidence            3344688999999999999999995  668888888762    3345555  788999999999999999999   6667


Q ss_pred             EEEEECCCCeEEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe---ccCceEEEEEecCC
Q 020756          150 MAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVS  223 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~---~~~~~~~~~w~P~~  223 (321)
                      +.+||+.+|.+...+...   .+.+++|.|||..|++|+.      |.++.-||++|+.+..-   ....|++++-.+|+
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~------dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP------DRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC------CCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence            999999999888776653   6788999999999999995      99999999999987443   33569999999999


Q ss_pred             CCCCCC
Q 020756          224 PDKFGD  229 (321)
Q Consensus       224 ~~~~~~  229 (321)
                      .+++..
T Consensus       367 k~vl~v  372 (519)
T KOG0293|consen  367 KYVLLV  372 (519)
T ss_pred             cEEEEE
Confidence            887754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.5e-13  Score=132.38  Aligned_cols=205  Identities=14%  Similarity=0.114  Sum_probs=127.9

Q ss_pred             EEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEE--EEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            8 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA--VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         8 ~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~--~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      +||-++..  +....+.+..........|||||+.+++  +..    ..     |...||++++.++...++. ...+..
T Consensus       166 ~l~~~d~d--G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~----~~-----g~~~I~~~~l~~g~~~~lt-~~~g~~  233 (428)
T PRK01029        166 ELWSVDYD--GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSY----KL-----GVPKIFLGSLENPAGKKIL-ALQGNQ  233 (428)
T ss_pred             eEEEEcCC--CCCceEcccCCCCcccceEccCCCceEEEEEEc----cC-----CCceEEEEECCCCCceEee-cCCCCc
Confidence            56666553  3444555555666778899999987544  321    11     3456899999887555554 345666


Q ss_pred             EEEEECcCCCEEEEEEc---cCCCeEEEEeCCC---ceeEEe--C-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           86 HDVQWSYSGSEFAVVYG---FMPASATIFNKKC---RPILEL--G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g---~~~~~i~i~d~~~---~~~~~~--~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ...+|||||++|+++..   ..+-.+.+|++..   .....+  + ........|||||+.|++.+..+....|+++++.
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            78999999999998742   1122334466642   222222  2 2344678999999999987632222356666664


Q ss_pred             C-CeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecCCCCCC
Q 020756          157 D-GKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       157 ~-~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~~~~~~  227 (321)
                      . +.....+..  ..+....|||||++|+......   ....+.+||+.+..+...  ....+....|+|++..++
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~---g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK---GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLV  386 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCC---CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEE
Confidence            2 222222222  2556789999999999887421   134688999865544222  223567799999988765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.60  E-value=6e-14  Score=135.90  Aligned_cols=208  Identities=16%  Similarity=0.209  Sum_probs=159.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |.-+++.||+..+   .++|.+..-  .......|=|.++++++..        ++  |+-.+|.+.....-+. +. .|
T Consensus       391 ga~~SikiWn~~t---~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~--------k~--Gel~vfdlaS~~l~Et-i~-AH  453 (888)
T KOG0306|consen  391 GAGESIKIWNRDT---LKCIRTITC--GYILASKFVPGDRYIVLGT--------KN--GELQVFDLASASLVET-IR-AH  453 (888)
T ss_pred             cCCCcEEEEEccC---cceeEEecc--ccEEEEEecCCCceEEEec--------cC--CceEEEEeehhhhhhh-hh-cc
Confidence            4567899999988   688877664  3666777888888887753        22  5556666544332222 22 58


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--------ceeEEe-------CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL-------GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--------~~~~~~-------~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      ++.|-+++.+||++.|++.  ..|.++.+||.+.        +.+..+       -...+-++.+||||++|+++-   +
T Consensus       454 dgaIWsi~~~pD~~g~vT~--saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL---L  528 (888)
T KOG0306|consen  454 DGAIWSISLSPDNKGFVTG--SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL---L  528 (888)
T ss_pred             ccceeeeeecCCCCceEEe--cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe---c
Confidence            9999999999999999994  6688999998731        111222       145788999999999999998   8


Q ss_pred             CCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEec
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKP  221 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P  221 (321)
                      |.+|+||-+++.+...++-+|  .+.++..|||+..|+|++      +|.+|+||-++ |.+-  +..|.+.++.+.|-|
T Consensus       529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS------ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS------ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc------CCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence            999999999999888777777  899999999999999999      59999999885 4443  456889999999999


Q ss_pred             CCCCCCCCc-chhhhcc
Q 020756          222 VSPDKFGDI-SELIKSV  237 (321)
Q Consensus       222 ~~~~~~~~~-~~~~~~~  237 (321)
                      ..-.+|+.. +.-.+.|
T Consensus       603 ~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  603 KTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             cceeEEEecCcceEEee
Confidence            887777764 3333445

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=8.4e-14  Score=129.18  Aligned_cols=201  Identities=13%  Similarity=0.220  Sum_probs=156.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-C
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~   80 (321)
                      +.-|.|+||++.+   +..+.+...+.+......|+|++..++++++.|     +      .+.++++.+... +..+ .
T Consensus        87 D~sG~V~vfD~k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~------v~k~~d~s~a~v-~~~l~~  151 (487)
T KOG0310|consen   87 DESGHVKVFDMKS---RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----K------VVKYWDLSTAYV-QAELSG  151 (487)
T ss_pred             CCcCcEEEecccc---HHHHHHHhhccCceeEEEecccCCeEEEecCCC-----c------eEEEEEcCCcEE-EEEecC
Confidence            4568999999665   556777777888888999999999988875322     1      133445555533 4333 4


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      |++.|.+.+|+|-..++++. |.=|++|++||.+.  ..+.++ |..++..+.+-|.|..|+++|    ...|++||+.+
T Consensus       152 htDYVR~g~~~~~~~hivvt-GsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~  226 (487)
T KOG0310|consen  152 HTDYVRCGDISPANDHIVVT-GSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG----GNSVKVWDLTT  226 (487)
T ss_pred             CcceeEeeccccCCCeEEEe-cCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecC
Confidence            89999999999988888776 55599999999964  577778 788999999999999999987    24899999985


Q ss_pred             C-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EEecc-CceEEEEEecCCCCCCC
Q 020756          158 G-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FKKMF-DKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       158 ~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~~~~-~~~~~~~w~P~~~~~~~  228 (321)
                      | +.++....|  .++++.+..|+..|++++      .|+.+++||++...+ +...+ ..+.++..+|++..++-
T Consensus       227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s------LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~vi  296 (487)
T KOG0310|consen  227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGS------LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVI  296 (487)
T ss_pred             CceehhhhhcccceEEEEEeecCCceEeecc------cccceEEEEccceEEEEeeecccceeeEEecCCCceEEE
Confidence            5 666666534  899999999999999999      599999999765544 55444 58999999997766553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=2.1e-14  Score=123.73  Aligned_cols=201  Identities=11%  Similarity=0.207  Sum_probs=150.9

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      +|++|||+++..  ..||....-++.++..+.||+..++..++.         ++.|+  |.+++.+.....+....|..
T Consensus        82 DGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---------SWD~T--iKLW~~~r~~Sv~Tf~gh~~  148 (311)
T KOG0277|consen   82 DGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTS---------SWDGT--IKLWDPNRPNSVQTFNGHNS  148 (311)
T ss_pred             CceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEee---------ccCCc--eEeecCCCCcceEeecCCcc
Confidence            789999998763  678888888899999999999888887763         33354  44555566555555567899


Q ss_pred             CeEEEEECcC-CCEEEEEEccCCCeEEEEeCCC--cee-EEeCCcCeeeEEEcCCCCeE-EEEccCCCCCcEEEEECCCC
Q 020756           84 PVHDVQWSYS-GSEFAVVYGFMPASATIFNKKC--RPI-LELGSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        84 ~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~--~~~-~~~~~~~~~~~~~sPdG~~l-~~~g~~n~~g~i~iwD~~~~  158 (321)
                      -|+.++|||. ...|+.+  ..|+.+.|||++.  +.+ ...|...+-++.||--...+ ++++   .|+.|+.||+++.
T Consensus       149 ~Iy~a~~sp~~~nlfas~--Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~~  223 (311)
T KOG0277|consen  149 CIYQAAFSPHIPNLFASA--SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRNL  223 (311)
T ss_pred             EEEEEecCCCCCCeEEEc--cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhhc
Confidence            9999999994 6677776  4478999999853  333 34488899999999866555 5555   7899999999876


Q ss_pred             -eEEEeeeCC--CeeeEEEccCCCE-EEEEEcCCceeecCcEEEEeec-Ccee---EEeccCceEEEEEecCCCCCCC
Q 020756          159 -KQLGTTRAE--CSVTSEWSPDGRY-FMTATTAPRLQIDNGIKIFHHN-GSLF---FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       159 -~~i~~~~~~--~~~~~~wSpdG~~-l~t~~s~~rl~~d~~v~iw~~~-g~~l---~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                       ..+..+.+|  .+..+.|||...- ||+++      +|-+++|||+. +..+   +..|.+-++.+.|++..+..+.
T Consensus       224 r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas------YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  224 RTPLFELNGHGLAVRKVKFSPHHASLLASAS------YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             cccceeecCCceEEEEEecCcchhhHhhhcc------ccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence             456666666  6778999997554 45555      69999999985 3222   5567778899999997665554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=9.1e-14  Score=128.95  Aligned_cols=200  Identities=15%  Similarity=0.156  Sum_probs=152.4

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.||+...   ...+.+.+-|+...+...|-.||+.+++.     |.+     |-..+|.  ......-+.--.|+.|
T Consensus        48 ~rvqly~~~~---~~~~k~~srFk~~v~s~~fR~DG~LlaaG-----D~s-----G~V~vfD--~k~r~iLR~~~ah~ap  112 (487)
T KOG0310|consen   48 VRVQLYSSVT---RSVRKTFSRFKDVVYSVDFRSDGRLLAAG-----DES-----GHVKVFD--MKSRVILRQLYAHQAP  112 (487)
T ss_pred             cEEEEEecch---hhhhhhHHhhccceeEEEeecCCeEEEcc-----CCc-----CcEEEec--cccHHHHHHHhhccCc
Confidence            4678888877   66777788899999999999999998874     333     3333442  2221111222358999


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQ  160 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~  160 (321)
                      |+.+.|+|++..+++. |+.|..+.+||+.+.-+. ++  |+..+.+.+|+|....|+++|  ..||.|++||.+.. ..
T Consensus       113 v~~~~f~~~d~t~l~s-~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG--sYDg~vrl~DtR~~~~~  189 (487)
T KOG0310|consen  113 VHVTKFSPQDNTMLVS-GSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG--SYDGKVRLWDTRSLTSR  189 (487)
T ss_pred             eeEEEecccCCeEEEe-cCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec--CCCceEEEEEeccCCce
Confidence            9999999988766665 566789999999765443 44  788999999999876555544  28999999999876 77


Q ss_pred             EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee---EEeccCceEEEEEecCCCCCCCC
Q 020756          161 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF---FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       161 i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l---~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +..+.+. .+-.+.+-|.|..|++|+       .|.+++||+. |..+   ...|...|.++.+.-++..+++.
T Consensus       190 v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~  256 (487)
T KOG0310|consen  190 VVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG  256 (487)
T ss_pred             eEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec
Confidence            7777765 778899999999999999       8999999996 5544   22378889999998888888876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.59  E-value=1.4e-12  Score=118.01  Aligned_cols=201  Identities=9%  Similarity=0.072  Sum_probs=134.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|.+|++.+   ++.+...... .....+.|+|+|+.+++...           ....++.++...... ...+..
T Consensus         8 ~~d~~v~~~d~~t---~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~-----------~~~~v~~~d~~~~~~-~~~~~~   71 (300)
T TIGR03866         8 EKDNTISVIDTAT---LEVTRTFPVG-QRPRGITLSKDGKLLYVCAS-----------DSDTIQVIDLATGEV-IGTLPS   71 (300)
T ss_pred             cCCCEEEEEECCC---CceEEEEECC-CCCCceEECCCCCEEEEEEC-----------CCCeEEEEECCCCcE-EEeccC
Confidence            4578999999987   5655544432 33557999999998766531           112356666654322 222222


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeC-CcCeeeEEEcCCCCeEEEEccCCCC-CcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG-SGPYNTVRWNPKGKFLCLAGFGNLP-GDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~-g~i~iwD~~~~  158 (321)
                      ...+..+.|+|+|+.+++. +..++.+.+||++.. .+..+. ......+.|+|+|++++++.   .+ ..+.+||..++
T Consensus        72 ~~~~~~~~~~~~g~~l~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~---~~~~~~~~~d~~~~  147 (300)
T TIGR03866        72 GPDPELFALHPNGKILYIA-NEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS---ETTNMAHFIDTKTY  147 (300)
T ss_pred             CCCccEEEECCCCCEEEEE-cCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe---cCCCeEEEEeCCCC
Confidence            3345789999999987765 345679999999654 445553 34467899999999999887   43 35778899888


Q ss_pred             eEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEec--c-----C--ceEEEEEecCCCCCC
Q 020756          159 KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKM--F-----D--KLFQAEWKPVSPDKF  227 (321)
Q Consensus       159 ~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~--~-----~--~~~~~~w~P~~~~~~  227 (321)
                      +.+..... .....+.|+|||++|++++.     .++.+++||+.. +.+....  .     .  ....+.|+|++..++
T Consensus       148 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~  222 (300)
T TIGR03866       148 EIVDNVLVDQRPRFAEFTADGKELWVSSE-----IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF  222 (300)
T ss_pred             eEEEEEEcCCCccEEEECCCCCEEEEEcC-----CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence            77654433 35667899999999876653     378999999954 3332211  1     1  234678899887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.58  E-value=1.2e-12  Score=118.34  Aligned_cols=203  Identities=11%  Similarity=0.092  Sum_probs=135.0

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|++|++.+   ++.+..... ..+...+.|+|+|+.+++...           ....|+.++.... .....+...
T Consensus        51 ~~~~v~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~-----------~~~~l~~~d~~~~-~~~~~~~~~  114 (300)
T TIGR03866        51 DSDTIQVIDLAT---GEVIGTLPS-GPDPELFALHPNGKILYIANE-----------DDNLVTVIDIETR-KVLAEIPVG  114 (300)
T ss_pred             CCCeEEEEECCC---CcEEEeccC-CCCccEEEECCCCCEEEEEcC-----------CCCeEEEEECCCC-eEEeEeeCC
Confidence            457899999887   555443332 234567899999998766421           1123666666543 222223333


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..+.+++|+|+|+.+++... ....+.+||...... ..+ .......+.|+|+|++|++++  ..++.|.+||+++++.
T Consensus       115 ~~~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       115 VEPEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSS--EIGGTVSVIDVATRKV  191 (300)
T ss_pred             CCcceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEc--CCCCEEEEEEcCccee
Confidence            45788999999999888633 223567789864433 222 334557799999999987765  2478999999999877


Q ss_pred             EEeeeCC---------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE-eccCceEEEEEecCCCCCCCC
Q 020756          161 LGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK-KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       161 i~~~~~~---------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~-~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +..+..+         ....+.|+|||++++++..     .++.+.+||.. ++.+.. .....+..+.|+|++..++..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-----~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-----PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             eeeeeecccccccccCCccceEECCCCCEEEEEcC-----CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEE
Confidence            6655321         2346889999998766543     26789999985 444322 233468899999999988753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.58  E-value=3.1e-14  Score=138.21  Aligned_cols=199  Identities=17%  Similarity=0.340  Sum_probs=144.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      -|.|.+|++....-++.+...+-+......+.|++.-.++++..+.|         |...+|.+..+..  ........+
T Consensus       109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD---------g~vK~~DlR~~~S--~~t~~~nSE  177 (839)
T KOG0269|consen  109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD---------GTVKCWDLRSKKS--KSTFRSNSE  177 (839)
T ss_pred             CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCC---------ceEEEEeeecccc--cccccccch
Confidence            36899999976321222333333456677899999999998875433         5555666654443  333334678


Q ss_pred             CeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC----ceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           84 PVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        84 ~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~----~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .|.|++|+| .+.+|+.+  ...|.+.+||++.    ...+.-|.+++.++.|+|++.+||++|   .|+.|+|||+.+.
T Consensus       178 SiRDV~fsp~~~~~F~s~--~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG---RDK~vkiWd~t~~  252 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASI--HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG---RDKMVKIWDMTDS  252 (839)
T ss_pred             hhhceeeccCCCceEEEe--cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC---CCccEEEEeccCC
Confidence            999999999 57788875  5578999999964    233444999999999999999999999   9999999999755


Q ss_pred             e--EEEeeeC-CCeeeEEEccCCCEEE-EEEcCCceeecCcEEEEeecCcee----EEeccCceEEEEEecC
Q 020756          159 K--QLGTTRA-ECSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNGSLF----FKKMFDKLFQAEWKPV  222 (321)
Q Consensus       159 ~--~i~~~~~-~~~~~~~wSpdG~~l~-t~~s~~rl~~d~~v~iw~~~g~~l----~~~~~~~~~~~~w~P~  222 (321)
                      +  .+.++.. ..+..+.|-|+-++.+ +++    +.+|..|+|||+....+    +..|.+.+..+.|.-.
T Consensus       253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcs----mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~  320 (839)
T KOG0269|consen  253 RAKPKHTINTIAPVGRVKWRPARSYHLATCS----MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSG  320 (839)
T ss_pred             CccceeEEeecceeeeeeeccCccchhhhhh----ccccceEEEEeeccccccceeeeccCccccceeccCC
Confidence            2  3333333 4778899999866544 444    34788999999976544    6678888999999773

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=6.3e-13  Score=117.68  Aligned_cols=203  Identities=11%  Similarity=0.189  Sum_probs=138.5

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      .-.++||+..+   +..+....-.|-+.-.+.|-...+.++.. ++..         ...|.++++....-.+.-..|..
T Consensus        35 dDsl~LYd~~~---g~~~~ti~skkyG~~~~~Fth~~~~~i~s-Stk~---------d~tIryLsl~dNkylRYF~GH~~  101 (311)
T KOG1446|consen   35 DDSLRLYDSLS---GKQVKTINSKKYGVDLACFTHHSNTVIHS-STKE---------DDTIRYLSLHDNKYLRYFPGHKK  101 (311)
T ss_pred             CCeEEEEEcCC---CceeeEeecccccccEEEEecCCceEEEc-cCCC---------CCceEEEEeecCceEEEcCCCCc
Confidence            34789999998   67776666665555566666655555443 2211         12355666555444444445666


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCC-------------------------------------------CceeEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-------------------------------------------CRPILE  120 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-------------------------------------------~~~~~~  120 (321)
                      .|.++.-+|-++.|+.  +..|.+|++||++                                           ..+..+
T Consensus       102 ~V~sL~~sP~~d~FlS--~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t  179 (311)
T KOG1446|consen  102 RVNSLSVSPKDDTFLS--SSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT  179 (311)
T ss_pred             eEEEEEecCCCCeEEe--cccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence            7777777776666655  3556666666654                                           112222


Q ss_pred             e--C---CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEcCCce
Q 020756          121 L--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRL  190 (321)
Q Consensus       121 ~--~---~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s~~rl  190 (321)
                      |  .   ....+.+.|||||++|+++.   ..+.+++.|.-+|..+.++..+     .....+|+|||+||+++..    
T Consensus       180 f~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~----  252 (311)
T KOG1446|consen  180 FSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD----  252 (311)
T ss_pred             EccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC----
Confidence            2  1   34567899999999999998   7789999999999988888765     2246899999999999994    


Q ss_pred             eecCcEEEEee-cCceeE--Ee-ccCceEEEEEecCCCCCCCCc
Q 020756          191 QIDNGIKIFHH-NGSLFF--KK-MFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       191 ~~d~~v~iw~~-~g~~l~--~~-~~~~~~~~~w~P~~~~~~~~~  230 (321)
                        |+.+.+|++ +|..+.  .+ +...+..+.|+|.-....++.
T Consensus       253 --dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  253 --DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             --CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence              899999999 566653  33 356777888999877766653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=6.8e-13  Score=127.80  Aligned_cols=191  Identities=10%  Similarity=0.112  Sum_probs=121.3

Q ss_pred             ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEE--EEcCC---CceeeeecCCCCCeEEEEECcCC
Q 020756           20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY--LTTDG---THEGLVPLRKEGPVHDVQWSYSG   94 (321)
Q Consensus        20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~--l~~~g---~~~~~v~l~~~~~v~~~~wsP~g   94 (321)
                      ...+.+.++.......|||||+.|+++..    ..     |...+|.  ++...   +...++.-...+......|||||
T Consensus       222 ~~~~lt~~~g~~~~p~wSPDG~~Laf~s~----~~-----g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG  292 (428)
T PRK01029        222 AGKKILALQGNQLMPTFSPRKKLLAFISD----RY-----GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG  292 (428)
T ss_pred             CceEeecCCCCccceEECCCCCEEEEEEC----CC-----CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence            34455556777778999999999998742    11     2223444  23322   22233332223345678999999


Q ss_pred             CEEEEEEccCCC--eEEEEeCC--CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-
Q 020756           95 SEFAVVYGFMPA--SATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-  167 (321)
Q Consensus        95 ~~l~~~~g~~~~--~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-  167 (321)
                      +.|+++.. .++  .+.++++.  +.....+  +...+..+.|||||+.|++.+..+....|++||+.+++........ 
T Consensus       293 ~~Laf~s~-~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~  371 (428)
T PRK01029        293 TRLVFVSN-KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE  371 (428)
T ss_pred             CEEEEEEC-CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC
Confidence            99998753 233  45555653  2223333  4456678999999999999874333468999999888654433332 


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecCC
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPVS  223 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~~  223 (321)
                      ....+.|+|||++|+.....   +....+.++++++.....  .....+...+|+|..
T Consensus       372 ~~~~p~wSpDG~~L~f~~~~---~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        372 NKESPSWAIDSLHLVYSAGN---SNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CccceEECCCCCEEEEEECC---CCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            55678999999999977642   124568888887654422  233456788998754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.4e-13  Score=129.27  Aligned_cols=190  Identities=12%  Similarity=0.075  Sum_probs=123.6

Q ss_pred             eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 020756           23 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG  102 (321)
Q Consensus        23 ~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g  102 (321)
                      .....+.......|||||+.|+++...    .     +...||.+++.++....+. ...+....+.|||||+.|+++..
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~----~-----g~~~L~~~dl~tg~~~~lt-~~~g~~~~~~wSPDG~~La~~~~  281 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFE----N-----RKAEIFVQDIYTQVREKVT-SFPGINGAPRFSPDGKKLALVLS  281 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEec----C-----CCcEEEEEECCCCCeEEec-CCCCCcCCeeECCCCCEEEEEEe
Confidence            344445566788999999999987421    1     3346899998776443333 22345568999999999987632


Q ss_pred             cCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe-eeCCCeeeEEEccC
Q 020756          103 FMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAECSVTSEWSPD  177 (321)
Q Consensus       103 ~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~-~~~~~~~~~~wSpd  177 (321)
                       .++  .|.++|+.+..+..+  +......+.|+|||++|++.+..+....|+++|+.+++.... +.........||||
T Consensus       282 -~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        282 -KDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD  360 (448)
T ss_pred             -CCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence             233  688889877666655  334456789999999999877433345788889887754332 33334456799999


Q ss_pred             CCEEEEEEcCCceeecCcEEE--EeecCceeEEecc-CceEEEEEecCCCCCCC
Q 020756          178 GRYFMTATTAPRLQIDNGIKI--FHHNGSLFFKKMF-DKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       178 G~~l~t~~s~~rl~~d~~v~i--w~~~g~~l~~~~~-~~~~~~~w~P~~~~~~~  228 (321)
                      |++|+..+.     .++...|  +|+.+..+..... .......|+|++..++-
T Consensus       361 G~~l~~~~~-----~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~  409 (448)
T PRK04792        361 GRSMIMVNR-----TNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIY  409 (448)
T ss_pred             CCEEEEEEe-----cCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEE
Confidence            999998764     2344445  5555443321111 11224589999876653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.57  E-value=2.7e-13  Score=122.03  Aligned_cols=204  Identities=15%  Similarity=0.180  Sum_probs=144.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |..|.|+||.+.+   +...+..-.--.+..=|.|+|.+..|+.-+. |         |.  +|.+.+......++.-.|
T Consensus       125 dmsG~v~v~~~st---g~~~~~~~~e~~dieWl~WHp~a~illAG~~-D---------Gs--vWmw~ip~~~~~kv~~Gh  189 (399)
T KOG0296|consen  125 DMSGKVLVFKVST---GGEQWKLDQEVEDIEWLKWHPRAHILLAGST-D---------GS--VWMWQIPSQALCKVMSGH  189 (399)
T ss_pred             CCCccEEEEEccc---CceEEEeecccCceEEEEecccccEEEeecC-C---------Cc--EEEEECCCcceeeEecCC
Confidence            4678999999998   4444333322356667899998887776421 1         43  555565554567777789


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC---CcC--------------------------------
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---SGP--------------------------------  125 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~---~~~--------------------------------  125 (321)
                      ..++++=.|.|+|+.+++.  +.+++|.+||.+ +.+++.+.   ...                                
T Consensus       190 ~~~ct~G~f~pdGKr~~tg--y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV  267 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTG--YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKV  267 (399)
T ss_pred             CCCcccccccCCCceEEEE--ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceE
Confidence            9999999999999999995  568999999985 34444431   000                                


Q ss_pred             ------------------eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEc
Q 020756          126 ------------------YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       126 ------------------~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s  186 (321)
                                        ..++.+.|....|=++.-|..||+|-|||+...+.-...++. .++.+.|-+ ..+|++++.
T Consensus       268 v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~  346 (399)
T KOG0296|consen  268 VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA  346 (399)
T ss_pred             EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc
Confidence                              112222222222211111238999999999887666666655 799999999 788888884


Q ss_pred             CCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756          187 APRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       187 ~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                            ++.|++||. +|+++  |.+|+..|++++.+|+...+++.
T Consensus       347 ------~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~  386 (399)
T KOG0296|consen  347 ------NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV  386 (399)
T ss_pred             ------CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence                  999999998 67777  77899999999999998877765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=1.2e-13  Score=119.04  Aligned_cols=139  Identities=21%  Similarity=0.418  Sum_probs=102.5

Q ss_pred             EEEEECcCCCEEEEEEcc-CC-------CeEEEEeC--CCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           86 HDVQWSYSGSEFAVVYGF-MP-------ASATIFNK--KCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~-~~-------~~i~i~d~--~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      ..+.|+|+|++|++.... .+       +...||.+  +..++..+   ..+++.+++|+|+|+.++++. |+.+..|.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence            468999999999986541 11       23455544  44444444   356799999999999887652 235679999


Q ss_pred             EECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEeccCceEEEEEecCCCCCCCC
Q 020756          153 WDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       153 wD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ||++ ++.+..+.......+.|||+|++|++++..   ...+.+.|||... +.+.......+..+.|+|++..+++.
T Consensus        88 yd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   88 YDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA  161 (194)
T ss_pred             EcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence            9996 777888877677889999999999999831   0134599999964 45555566678899999999988875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.4e-13  Score=129.30  Aligned_cols=200  Identities=12%  Similarity=0.096  Sum_probs=127.6

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|.++++..   ++ ....+.++.....+.|||||+.|++....+         |...||.++..+.....+. .+....
T Consensus       243 ~L~~~dl~t---g~-~~~lt~~~g~~~~~~wSPDG~~La~~~~~~---------g~~~Iy~~dl~tg~~~~lt-~~~~~~  308 (448)
T PRK04792        243 EIFVQDIYT---QV-REKVTSFPGINGAPRFSPDGKKLALVLSKD---------GQPEIYVVDIATKALTRIT-RHRAID  308 (448)
T ss_pred             EEEEEECCC---CC-eEEecCCCCCcCCeeECCCCCEEEEEEeCC---------CCeEEEEEECCCCCeEECc-cCCCCc
Confidence            355555544   33 233444555556789999999998864321         4456899998776554443 234456


Q ss_pred             EEEEECcCCCEEEEEEcc-CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           86 HDVQWSYSGSEFAVVYGF-MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~-~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      ..+.|+|||+.|++.... ....+.++|+.+.....+  .........|+|||++|++.+..+....|+++|+.+++...
T Consensus       309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~  388 (448)
T PRK04792        309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV  388 (448)
T ss_pred             cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence            789999999999886432 123677778865544443  22233457999999999998743333467888998875433


Q ss_pred             eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecC
Q 020756          163 TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPV  222 (321)
Q Consensus       163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~  222 (321)
                      ...........|+|||++|+.++...   ....+.+++.+|......  ....+...+|+|.
T Consensus       389 lt~~~~d~~ps~spdG~~I~~~~~~~---g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        389 LTSTRLDESPSVAPNGTMVIYSTTYQ---GKQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             ccCCCCCCCceECCCCCEEEEEEecC---CceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            22222233568999999999888520   112367778888765433  3346677888874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=9.3e-14  Score=124.90  Aligned_cols=198  Identities=12%  Similarity=0.143  Sum_probs=151.4

Q ss_pred             EEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeE
Q 020756            7 VQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH   86 (321)
Q Consensus         7 v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~   86 (321)
                      +.+|+....  .+++....-.+.....+.+-|.|++|+...   .|.         .+..++.+.+........|.+-|+
T Consensus       174 ~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s---rD~---------tik~We~~tg~cv~t~~~h~ewvr  239 (406)
T KOG0295|consen  174 AKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGDHILSCS---RDN---------TIKAWECDTGYCVKTFPGHSEWVR  239 (406)
T ss_pred             hhheeHHHH--HHHHHHhcCcccceeeEEEEecCCeeeecc---ccc---------ceeEEecccceeEEeccCchHhEE
Confidence            677888763  355666666667777888999999987753   222         245566666644445456888999


Q ss_pred             EEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEeCCcCeeeEEEcCC---------------CCeEEEEccCCCCC
Q 020756           87 DVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPK---------------GKFLCLAGFGNLPG  148 (321)
Q Consensus        87 ~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~sPd---------------G~~l~~~g~~n~~g  148 (321)
                      -++-+.||..|+.+  +.+.++++|-+..+   .....|..++.+++|-|.               |.+++.++   .|+
T Consensus       240 ~v~v~~DGti~As~--s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---rDk  314 (406)
T KOG0295|consen  240 MVRVNQDGTIIASC--SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---RDK  314 (406)
T ss_pred             EEEecCCeeEEEec--CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec---ccc
Confidence            99999999999885  66889999987544   666668999999999885               24666666   899


Q ss_pred             cEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeE--EeccCceEEEEEecCC
Q 020756          149 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF--KKMFDKLFQAEWKPVS  223 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~--~~~~~~~~~~~w~P~~  223 (321)
                      +|++||+.++.++-++.+|  .+..++|+|.|+||+++..      |.++++||++.. ++.  ..|..-+..+.++-+.
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD------Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~  388 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD------DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA  388 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec------CCcEEEEEeccceeeeccCCCcceeEEEecCCCC
Confidence            9999999999999999887  7888999999999999994      899999999654 442  2344456778887777


Q ss_pred             CCCCCC
Q 020756          224 PDKFGD  229 (321)
Q Consensus       224 ~~~~~~  229 (321)
                      +++.+.
T Consensus       389 p~VvTG  394 (406)
T KOG0295|consen  389 PYVVTG  394 (406)
T ss_pred             ceEEec
Confidence            766654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.9e-13  Score=117.95  Aligned_cols=204  Identities=11%  Similarity=0.216  Sum_probs=140.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecc--cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee--
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f--~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v--   77 (321)
                      |.-|.-+||-+.... .+-|....-|  ...-.++.||+....+++.++-|         |.  |-+++. +..+..+  
T Consensus        33 Gl~G~G~L~ile~~~-~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD---------GS--Lrl~d~-~~~s~Pi~~   99 (311)
T KOG0277|consen   33 GLAGNGRLFILEVTD-PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD---------GS--LRLFDL-TMPSKPIHK   99 (311)
T ss_pred             ccccCceEEEEecCC-CCCeEEEEeeecccceeEeeecCCCcceEEEEecC---------ce--EEEecc-CCCCcchhH
Confidence            334444555555421 2334333333  45566899999999888876532         43  334442 2222222  


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCC-CCeEEEEccCCCCCcEEEE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPK-GKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPd-G~~l~~~g~~n~~g~i~iw  153 (321)
                      -.+|+..|.++.|++..++..+. +.-|++|+||+. +.+.+.+|  |..-|....|||. ++++++++   .|+.+.||
T Consensus       100 ~kEH~~EV~Svdwn~~~r~~~lt-sSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S---gd~~l~lw  175 (311)
T KOG0277|consen  100 FKEHKREVYSVDWNTVRRRIFLT-SSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS---GDGTLRLW  175 (311)
T ss_pred             HHhhhhheEEeccccccceeEEe-eccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc---CCceEEEE
Confidence            22488999999999976666555 478999999997 56677778  6777899999995 67778887   88999999


Q ss_pred             ECCC-CeEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecCce--e--EEeccCceEEEEEecCCCC
Q 020756          154 DYVD-GKQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSL--F--FKKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       154 D~~~-~~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~~--l--~~~~~~~~~~~~w~P~~~~  225 (321)
                      |++. ++.+. ++.|  .+.++.|+.- -+.++|++      +|+.|++||+..-.  +  ..+|.-.|..+.|+|....
T Consensus       176 dvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~------vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  176 DVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGG------VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS  248 (311)
T ss_pred             EecCCCceeE-EEeccceeEeecccccCCcEEEecC------CCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence            9874 55555 5555  7999999995 55555666      69999999995322  2  3345557889999998877


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      ++..
T Consensus       249 lLaS  252 (311)
T KOG0277|consen  249 LLAS  252 (311)
T ss_pred             Hhhh
Confidence            7654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=9.5e-13  Score=126.92  Aligned_cols=196  Identities=11%  Similarity=0.039  Sum_probs=127.1

Q ss_pred             ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 020756           20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV   99 (321)
Q Consensus        20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~   99 (321)
                      ..............+.|||||+.|+++...    .     +...||.++..++....+. ...+.+..+.|||||+.|++
T Consensus       190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~----~-----~~~~l~~~~l~~g~~~~l~-~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        190 RAVTLLQSREPILSPRWSPDGKRIAYVSFE----Q-----KRPRIFVQNLDTGRREQIT-NFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             CceEEecCCCceeeeeECCCCCEEEEEEcC----C-----CCCEEEEEECCCCCEEEcc-CCCCCcCCeEECCCCCEEEE
Confidence            334444445566788999999999886421    1     2346888888766444443 23456668999999999987


Q ss_pred             EEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe-eeCCCeeeEEEc
Q 020756          100 VYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAECSVTSEWS  175 (321)
Q Consensus       100 ~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~-~~~~~~~~~~wS  175 (321)
                      ... .....|.++|+.+.....+  +........|+|||+.|++.+..+....|+++|+.+++.... +.........||
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~S  339 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLS  339 (430)
T ss_pred             EEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEEC
Confidence            542 2234788899987766655  334455689999999999886433345788999887754322 223344567999


Q ss_pred             cCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756          176 PDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       176 pdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~  228 (321)
                      |||++|+......   ....+.+||+.+...... .........|+|++..++-
T Consensus       340 pdg~~i~~~~~~~---~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~  390 (430)
T PRK00178        340 ADGKTLVMVHRQD---GNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIY  390 (430)
T ss_pred             CCCCEEEEEEccC---CceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEE
Confidence            9999999887421   122467778755433111 1112235689999877663

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2.1e-13  Score=129.92  Aligned_cols=198  Identities=11%  Similarity=0.125  Sum_probs=151.3

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~~   82 (321)
                      +.+||||++.+   ...+.+...+..-...+.-+|.--+++...  | |.         .|.+++-.+.- -.++--.|+
T Consensus        76 D~~IrVfnynt---~ekV~~FeAH~DyIR~iavHPt~P~vLtsS--D-Dm---------~iKlW~we~~wa~~qtfeGH~  140 (794)
T KOG0276|consen   76 DMQIRVFNYNT---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSS--D-DM---------TIKLWDWENEWACEQTFEGHE  140 (794)
T ss_pred             CceEEEEeccc---ceeeEEeeccccceeeeeecCCCCeEEecC--C-cc---------EEEEeeccCceeeeeEEcCcc
Confidence            56899999999   677777777777778888899888876642  1 11         12333333321 223333588


Q ss_pred             CCeEEEEECc-CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEECC
Q 020756           83 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        83 ~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ..|.+++|+| |.+.|+.+  +.|+++++|.+. ..+.+++  |...+|++.|-|-|.  +|++++   .|..|+|||.+
T Consensus       141 HyVMqv~fnPkD~ntFaS~--sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga---DD~tiKvWDyQ  215 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASA--SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA---DDLTIKVWDYQ  215 (794)
T ss_pred             eEEEEEEecCCCccceeee--eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC---CCceEEEeecc
Confidence            9999999999 56688885  779999999994 4466776  889999999998664  889988   89999999999


Q ss_pred             CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCC
Q 020756          157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~  227 (321)
                      +..|+.++++|  ++..+.|+|.--.|++++      .|++++||+-....+   +....+.+|++.-.+....+.
T Consensus       216 tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs------EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  216 TKSCVQTLEGHTNNVSFVFFHPELPIIISGS------EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIA  285 (794)
T ss_pred             hHHHHHHhhcccccceEEEecCCCcEEEEec------CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEE
Confidence            99999999987  889999999999999999      699999999755433   334456777777766655443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.2e-12  Score=126.21  Aligned_cols=200  Identities=13%  Similarity=0.119  Sum_probs=127.8

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|.+|++..   ++ ......++.....+.|||||+.|++....+         |...||.++..+.....+. .+.+..
T Consensus       224 ~l~~~~l~~---g~-~~~l~~~~g~~~~~~~SpDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~  289 (430)
T PRK00178        224 RIFVQNLDT---GR-REQITNFEGLNGAPAWSPDGSKLAFVLSKD---------GNPEIYVMDLASRQLSRVT-NHPAID  289 (430)
T ss_pred             EEEEEECCC---CC-EEEccCCCCCcCCeEECCCCCEEEEEEccC---------CCceEEEEECCCCCeEEcc-cCCCCc
Confidence            566677765   32 233343444455789999999998864321         3346899988776444443 334556


Q ss_pred             EEEEECcCCCEEEEEEccC-CCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           86 HDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      ..+.|+|||+.|++..... ...|.++|+.+.....+  .........|||||++|++....+....|++||+.+++...
T Consensus       290 ~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~  369 (430)
T PRK00178        290 TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI  369 (430)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence            6789999999998874321 23677788765544433  22233457899999999998743333468999998875433


Q ss_pred             eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecC
Q 020756          163 TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPV  222 (321)
Q Consensus       163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~  222 (321)
                      ...........|||||++|+.++...   ....+.+++.+|.....  .....+...+|+|.
T Consensus       370 lt~~~~~~~p~~spdg~~i~~~~~~~---g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        370 LTDTSLDESPSVAPNGTMLIYATRQQ---GRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ccCCCCCCCceECCCCCEEEEEEecC---CceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            22222333569999999999988421   12346677777765422  23346777888774

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.54  E-value=4.7e-13  Score=120.40  Aligned_cols=174  Identities=14%  Similarity=0.217  Sum_probs=132.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      .+..|++|++.+   +-++.+..-...-..-+.-+.||+.++...            ..+.|..+-.....-..+-..|+
T Consensus       213 rD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DGti~As~s------------~dqtl~vW~~~t~~~k~~lR~hE  277 (406)
T KOG0295|consen  213 RDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDGTIIASCS------------NDQTLRVWVVATKQCKAELREHE  277 (406)
T ss_pred             cccceeEEeccc---ceeEEeccCchHhEEEEEecCCeeEEEecC------------CCceEEEEEeccchhhhhhhccc
Confidence            456789999988   677777666665555666677777766541            12234444333332233444689


Q ss_pred             CCeEEEEECcCCC--------------EEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCC
Q 020756           83 GPVHDVQWSYSGS--------------EFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        83 ~~v~~~~wsP~g~--------------~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                      -+|.+++|.|...              .+++. +..|++|++||+ .+..++++  |...|..++|+|.|+||+++.   
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s-~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca---  353 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGS-GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA---  353 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEe-ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---
Confidence            9999999976432              23333 678999999999 46678888  788999999999999999999   


Q ss_pred             CCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          146 LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       146 ~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      .|+++.+||+++++|+.+.+.|  -++.++|..+--++++|+      +|..+++|..
T Consensus       354 DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGs------Vdqt~KvwEc  405 (406)
T KOG0295|consen  354 DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGS------VDQTVKVWEC  405 (406)
T ss_pred             cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecc------ccceeeeeec
Confidence            9999999999999999999886  678899999999999999      7999999974

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.54  E-value=2.9e-13  Score=132.62  Aligned_cols=134  Identities=16%  Similarity=0.298  Sum_probs=109.5

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .|.+.|.|+.||-++ +|+.  ..||.+++||++.. +.+..| |...|.|++|+| |.+|+++|+   +||.|+||++.
T Consensus       367 GHt~DILDlSWSKn~-fLLS--SSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS---LD~KvRiWsI~  440 (712)
T KOG0283|consen  367 GHTADILDLSWSKNN-FLLS--SSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS---LDGKVRLWSIS  440 (712)
T ss_pred             ccchhheecccccCC-eeEe--ccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc---cccceEEeecC
Confidence            478889999999876 4444  48999999999954 577788 899999999999 788999999   99999999997


Q ss_pred             CCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-----c------cCceEEEEEecCCC
Q 020756          157 DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-----M------FDKLFQAEWKPVSP  224 (321)
Q Consensus       157 ~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-----~------~~~~~~~~w~P~~~  224 (321)
                      ..+.+.....+ .|+.++++|||++.+.|+      .++.+++|+..|..+...     +      ...|..+.+.|..+
T Consensus       441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~  514 (712)
T KOG0283|consen  441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGT------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP  514 (712)
T ss_pred             cCeeEeehhhhhhheeEEeccCCceEEEEE------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence            77766665555 789999999999999999      699999999977544111     1      12699999999766


Q ss_pred             C
Q 020756          225 D  225 (321)
Q Consensus       225 ~  225 (321)
                      .
T Consensus       515 ~  515 (712)
T KOG0283|consen  515 D  515 (712)
T ss_pred             C
Confidence            3

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.54  E-value=5.1e-13  Score=122.56  Aligned_cols=164  Identities=15%  Similarity=0.268  Sum_probs=123.5

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-CC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~~   82 (321)
                      ...|+||..|.   ..+.....-+...+..+.-+|.|+|++...       +..+++   ++.+. .|..-..+.-+ .+
T Consensus       282 d~~i~vws~~~---~s~~~~~~~h~~~V~~ls~h~tgeYllsAs-------~d~~w~---Fsd~~-~g~~lt~vs~~~s~  347 (506)
T KOG0289|consen  282 DEIIRVWSVPL---SSEPTSSRPHEEPVTGLSLHPTGEYLLSAS-------NDGTWA---FSDIS-SGSQLTVVSDETSD  347 (506)
T ss_pred             cceEEeecccc---ccCccccccccccceeeeeccCCcEEEEec-------CCceEE---EEEcc-CCcEEEEEeecccc
Confidence            45799999998   555555556677788889999999998742       223322   22222 22222333321 12


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      -.+++.+|+|||-.|++  |.+|+.+.|||++. ..+..|  |.++|..+.|+-+|=+|+++.   .|+.|.+||++..+
T Consensus       348 v~~ts~~fHpDgLifgt--gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~  422 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGT--GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLK  422 (506)
T ss_pred             ceeEEeeEcCCceEEec--cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhc
Confidence            35899999999977766  89999999999964 356666  899999999999999999998   88999999999887


Q ss_pred             EEEeeeCC---CeeeEEEccCCCEEEEEEc
Q 020756          160 QLGTTRAE---CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       160 ~i~~~~~~---~~~~~~wSpdG~~l~t~~s  186 (321)
                      .+.++.-.   .+..++|.+.|.||+.+++
T Consensus       423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             ccceeeccccccceeEEEcCCCCeEEeecc
Confidence            76666554   5889999999999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.54  E-value=1.4e-13  Score=121.70  Aligned_cols=195  Identities=11%  Similarity=0.166  Sum_probs=144.2

Q ss_pred             ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-------------CCceee-----eecCC
Q 020756           20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-------------GTHEGL-----VPLRK   81 (321)
Q Consensus        20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-------------g~~~~~-----v~l~~   81 (321)
                      +....+.+|.....-.||+||..++.-.   .|.+         |.++++.             |....+     ...+|
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGs---aD~S---------IKildvermlaks~~~em~~~~~qa~hPvIRTlYDH  171 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGS---ADAS---------IKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH  171 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccC---Ccce---------EEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence            4466677787777889999999887642   1211         2333322             111111     12358


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      -++|+++.|+|....|+.  |..|+++++||...-    ....| ...++.++.|+|.|.||+++.   ....+++||++
T Consensus       172 ~devn~l~FHPre~ILiS--~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~  246 (430)
T KOG0640|consen  172 VDEVNDLDFHPRETILIS--GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVN  246 (430)
T ss_pred             cCcccceeecchhheEEe--ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec---CCCceeEEecc
Confidence            899999999999887776  788999999998422    23334 567899999999999999998   67799999999


Q ss_pred             CCeEEEeeeC---C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe-ecCceeEE---e-ccCceEEEEEecCCCCC
Q 020756          157 DGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLFFK---K-MFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       157 ~~~~i~~~~~---~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~-~~g~~l~~---~-~~~~~~~~~w~P~~~~~  226 (321)
                      +.+|...-..   |  .++++.+|+.|+..+|++      .|+.|+||| ++++++..   . .-.+|++..|.-++.++
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecCCccEEEEec------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            9988755321   2  788999999999999999      599999999 57777622   2 33589999999999999


Q ss_pred             CCCcc-hhhhcc
Q 020756          227 FGDIS-ELIKSV  237 (321)
Q Consensus       227 ~~~~~-~~~~~~  237 (321)
                      ++... .+.+.|
T Consensus       321 LsSG~DS~vkLW  332 (430)
T KOG0640|consen  321 LSSGKDSTVKLW  332 (430)
T ss_pred             eecCCcceeeee
Confidence            98863 333444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.4e-13  Score=135.40  Aligned_cols=187  Identities=15%  Similarity=0.193  Sum_probs=146.1

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      ..-.+.|+|.--.|++..++          |..+||....  . ... -..+|+|||..+.|+|++..|+.  |..|.+|
T Consensus        11 RvKglsFHP~rPwILtslHs----------G~IQlWDYRM--~-tli~rFdeHdGpVRgv~FH~~qplFVS--GGDDykI   75 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHS----------GVIQLWDYRM--G-TLIDRFDEHDGPVRGVDFHPTQPLFVS--GGDDYKI   75 (1202)
T ss_pred             cccceecCCCCCEEEEeecC----------ceeeeehhhh--h-hHHhhhhccCCccceeeecCCCCeEEe--cCCccEE
Confidence            45578899999998886432          4444442211  1 111 11259999999999999988877  6778999


Q ss_pred             EEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEE
Q 020756          109 TIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMT  183 (321)
Q Consensus       109 ~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t  183 (321)
                      ++|+.+.. .++++  |...+.++.|++.--.|++++   .|.+|+||+..+++++..+.+|  .+.+..|+|....|++
T Consensus        76 kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS---DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVS  152 (1202)
T KOG0292|consen   76 KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS---DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVS  152 (1202)
T ss_pred             EEEecccceehhhhccccceeEEeeccCCCceEEEcc---CCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEE
Confidence            99999654 56666  788999999999999999999   9999999999999999999987  7889999999999999


Q ss_pred             EEcCCceeecCcEEEEeecCc--------------------------------eeEEeccCceEEEEEecCCCCCCCCc-
Q 020756          184 ATTAPRLQIDNGIKIFHHNGS--------------------------------LFFKKMFDKLFQAEWKPVSPDKFGDI-  230 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~~g~--------------------------------~l~~~~~~~~~~~~w~P~~~~~~~~~-  230 (321)
                      ++      .|.+|++||++|-                                .+..+|...|.-++|+|.-|-+.+.. 
T Consensus       153 aS------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  153 AS------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             ec------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            99      5999999999651                                12445666788899999999888875 


Q ss_pred             chhhhccccc
Q 020756          231 SELIKSVGSL  240 (321)
Q Consensus       231 ~~~~~~~~~~  240 (321)
                      |-..+.|.+.
T Consensus       227 DRqVKlWrmn  236 (1202)
T KOG0292|consen  227 DRQVKLWRMN  236 (1202)
T ss_pred             cceeeEEEec
Confidence            3345566443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=2e-12  Score=123.79  Aligned_cols=186  Identities=17%  Similarity=0.194  Sum_probs=123.6

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CC
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MP  105 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~-~~  105 (321)
                      .......+.|||+|++|++....+         +...||.+++.++....+. ...+.+..+.|+|||+.|++.... ..
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~---------~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFES---------GKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCC---------CCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEECCCCC
Confidence            334467789999999998864211         2345888888765333333 345667789999999998875322 22


Q ss_pred             CeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee-eCCCeeeEEEccCCCEEE
Q 020756          106 ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECSVTSEWSPDGRYFM  182 (321)
Q Consensus       106 ~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~-~~~~~~~~~wSpdG~~l~  182 (321)
                      ..|.+||+.+.....+  +........|+|||+.|++.+.......|+++|+.+++..... .......+.|||||++|+
T Consensus       258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence            3788899877666555  3334457899999999988763333347999999877543322 233667789999999999


Q ss_pred             EEEcCCceeecC---cEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756          183 TATTAPRLQIDN---GIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       183 t~~s~~rl~~d~---~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~  228 (321)
                      .+..      +.   .+.+||+.+...... .........|+|++..++-
T Consensus       338 ~~~~------~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       338 FVHR------EGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILY  381 (417)
T ss_pred             EEEc------cCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEE
Confidence            9884      33   577777755433211 1122345689998876654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.53  E-value=1.6e-12  Score=112.89  Aligned_cols=213  Identities=13%  Similarity=0.165  Sum_probs=155.0

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC----Cce-eee
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG----THE-GLV   77 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g----~~~-~~v   77 (321)
                      ++.+++||++++   ++++++..+ ++.+..+.|+.+|+++++++...+   |  |.+...++.+....    ..+ ...
T Consensus        72 AD~t~kLWDv~t---Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~m---g--~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   72 ADQTAKLWDVET---GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQM---G--YTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             ccceeEEEEcCC---CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhc---C--cceEEEEEEccCChhhhcccCceEE
Confidence            466899999999   899988885 567778999999999988743211   2  23555566554322    112 222


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-e-eE--EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-P-IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~-~~--~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      -..++..+..+-|+|-++.|+.  |..++.|.+||++.. . +.  ..|...++.+.+|||..++++++   .|.+-++|
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~--Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s---~Dttakl~  217 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIA--GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS---KDTTAKLV  217 (327)
T ss_pred             ecCCccceeeeeecccCCEEEE--ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc---cCccceee
Confidence            2346788999999999998887  677899999999753 2 22  23788999999999999999999   89999999


Q ss_pred             ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceee-------c-CcEEEEee-cCcee--EEeccCceEEEEEec
Q 020756          154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQI-------D-NGIKIFHH-NGSLF--FKKMFDKLFQAEWKP  221 (321)
Q Consensus       154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~-------d-~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P  221 (321)
                      |+.+.+.+.++... .+.+.+.+|.-.+++.++..--+-+       . -.-+.||+ ..+.+  .++|+..+..++++|
T Consensus       218 D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP  297 (327)
T KOG0643|consen  218 DVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP  297 (327)
T ss_pred             eccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence            99999999998876 7788999999888887773110000       0 11222332 11222  678999999999999


Q ss_pred             CCCCCCCC
Q 020756          222 VSPDKFGD  229 (321)
Q Consensus       222 ~~~~~~~~  229 (321)
                      ++....+.
T Consensus       298 dGksYsSG  305 (327)
T KOG0643|consen  298 DGKSYSSG  305 (327)
T ss_pred             CCcccccC
Confidence            98766554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.53  E-value=1.7e-12  Score=116.95  Aligned_cols=163  Identities=18%  Similarity=0.258  Sum_probs=124.0

Q ss_pred             eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeE-EEEEcCCCceeeeec-CCCCCeEEEEECcCCCEEEEE
Q 020756           23 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL-NYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVV  100 (321)
Q Consensus        23 ~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l-~~l~~~g~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~  100 (321)
                      +...++.+...+.-+|+ ..+++.-            |++.+ |+++...+ +....+ .|++.|.++.||-||.+||+ 
T Consensus        59 tF~~H~~svFavsl~P~-~~l~aTG------------GgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLAT-  123 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPN-NNLVATG------------GGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLAT-  123 (399)
T ss_pred             ehhhcCCceEEEEeCCC-CceEEec------------CCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEe-
Confidence            33445678888888994 4444421            33333 44444333 333333 58999999999999999998 


Q ss_pred             EccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEc
Q 020756          101 YGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS  175 (321)
Q Consensus       101 ~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wS  175 (321)
                       |+|++++.||....+ ....+  .-..+..+.|+|-+.+|+.++   .||.|+.|.+.++.....+.+|  .+++=+|.
T Consensus       124 -GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~---~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~  199 (399)
T KOG0296|consen  124 -GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS---TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI  199 (399)
T ss_pred             -cCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec---CCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence             899999999998543 33444  456788899999999999998   9999999999987777777777  56777999


Q ss_pred             cCCCEEEEEEcCCceeecCcEEEEee-cCceeEEec
Q 020756          176 PDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  210 (321)
Q Consensus       176 pdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~  210 (321)
                      |||+.++++..      |+.|++|+. +|+.++...
T Consensus       200 pdGKr~~tgy~------dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  200 PDGKRILTGYD------DGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             CCCceEEEEec------CceEEEEecCCCceeEEec
Confidence            99999999995      999999998 677776554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.5e-12  Score=123.32  Aligned_cols=196  Identities=10%  Similarity=0.053  Sum_probs=125.2

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|-++++.+    ......+.++.......|||||+.|++....    .     |...||.++..++...+++ ...+..
T Consensus       214 ~Iyv~dl~t----g~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~-----g~~~Iy~~dl~~g~~~~LT-~~~~~d  279 (419)
T PRK04043        214 TLYKYNLYT----GKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----K-----GQPDIYLYDTNTKTLTQIT-NYPGID  279 (419)
T ss_pred             EEEEEECCC----CcEEEEecCCCcEEeeEECCCCCEEEEEEcc----C-----CCcEEEEEECCCCcEEEcc-cCCCcc
Confidence            566666655    3334444466556678899999999887532    1     3457999998777555554 223334


Q ss_pred             EEEEECcCCCEEEEEEccCCC-eEEEEeCCCceeEEeC-CcCeeeEEEcCCCCeEEEEccCC------CCCcEEEEECCC
Q 020756           86 HDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN------LPGDMAFWDYVD  157 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n------~~g~i~iwD~~~  157 (321)
                      ....|+|||+.|+++...... .|.+.|+.+.....+- .+..+ ..|||||++|++....+      ....|++.|+.+
T Consensus       280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~  358 (419)
T PRK04043        280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS  358 (419)
T ss_pred             CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence            567999999999998643222 7888888766554442 22223 59999999999987432      114799999988


Q ss_pred             CeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEE
Q 020756          158 GKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEW  219 (321)
Q Consensus       158 ~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w  219 (321)
                      +...............|||||+.|+..+..   +....+.+.+++|......  ....+.+.+|
T Consensus       359 g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l~g~~~~~l~~~~g~~~~p~W  419 (419)
T PRK04043        359 DYIRRLTANGVNQFPRFSSDGGSIMFIKYL---GNQSALGIIRLNYNKSFLFPLKVGKIQSIDW  419 (419)
T ss_pred             CCeEECCCCCCcCCeEECCCCCEEEEEEcc---CCcEEEEEEecCCCeeEEeecCCCccCCCCC
Confidence            754332222233358999999999998752   1223466777788644322  2334444444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.52  E-value=2.6e-14  Score=126.82  Aligned_cols=165  Identities=13%  Similarity=0.159  Sum_probs=125.2

Q ss_pred             ceeeeeccc-CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-------eecCCCCCeEEEEEC
Q 020756           20 PLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-------VPLRKEGPVHDVQWS   91 (321)
Q Consensus        20 ~i~~~~~f~-~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-------v~l~~~~~v~~~~ws   91 (321)
                      ...+..|.+ .-.-...|||||+||+...   +|       |=..+|... .|.-.+.       -..-++++|.++.||
T Consensus       204 l~r~IKFg~KSh~EcA~FSPDgqyLvsgS---vD-------GFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FS  272 (508)
T KOG0275|consen  204 LARSIKFGQKSHVECARFSPDGQYLVSGS---VD-------GFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFS  272 (508)
T ss_pred             hhhheecccccchhheeeCCCCceEeecc---cc-------ceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeec
Confidence            345556653 3333457999999997642   11       211222221 1110110       112368999999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEeCC-CceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756           92 YSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  167 (321)
Q Consensus        92 P~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~  167 (321)
                      .|...++.  |..|++|++|-+. +..+..|   |...+.++.||-|+..|++++   .|.++++.-+++|+++..+.+|
T Consensus       273 RDsEMlAs--GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s---fD~tvRiHGlKSGK~LKEfrGH  347 (508)
T KOG0275|consen  273 RDSEMLAS--GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS---FDQTVRIHGLKSGKCLKEFRGH  347 (508)
T ss_pred             ccHHHhhc--cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc---ccceEEEeccccchhHHHhcCc
Confidence            99999988  8899999999984 4566666   788999999999999999999   8889999999999999999998


Q ss_pred             --CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          168 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       168 --~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                        .++...|++||.+|+++++      |+++++|+. +++++
T Consensus       348 sSyvn~a~ft~dG~~iisaSs------DgtvkvW~~KtteC~  383 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISASS------DGTVKVWHGKTTECL  383 (508)
T ss_pred             cccccceEEcCCCCeEEEecC------CccEEEecCcchhhh
Confidence              6788999999999999997      999999998 45555

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.51  E-value=2.4e-13  Score=120.17  Aligned_cols=184  Identities=18%  Similarity=0.345  Sum_probs=132.5

Q ss_pred             CCCceEEEEEcCC-------------cCCCCceeeeecc--cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEE
Q 020756            2 GSPASVQIYACGK-------------DLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY   66 (321)
Q Consensus         2 g~p~~v~v~~~~~-------------~~~~~~i~~~~~f--~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~   66 (321)
                      +.+++|+|++++.             ....+.-.-++++  -.++..+.|+|..+.|+..+   .|       +...||.
T Consensus       131 saD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s---rD-------~tvKlFD  200 (430)
T KOG0640|consen  131 SADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS---RD-------NTVKLFD  200 (430)
T ss_pred             CCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc---CC-------CeEEEEe
Confidence            4678999999982             0011112234555  35677899999977765532   12       2223343


Q ss_pred             EEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE------eCCcCeeeEEEcCCCCeEEE
Q 020756           67 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LGSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        67 l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~------~~~~~~~~~~~sPdG~~l~~  140 (321)
                      +.-.........+....+|.++.|+|.|+++++  |.....+++||+.+-+-+.      -|.+.++++.||+.|++-++
T Consensus       201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllv--gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT  278 (430)
T KOG0640|consen  201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV--GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT  278 (430)
T ss_pred             cccHHHHHHHHHhhccceeeeEeecCCCceEEE--ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEE
Confidence            322111111112234679999999999999888  5656699999997644332      26788999999999999999


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeC-C---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRA-E---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~-~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      ++   .||.|+|||--+++|+.++.. |   .+.+..|..+|+||++++      .|..++||.+ +|+.+
T Consensus       279 aS---kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG------~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  279 AS---KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG------KDSTVKLWEISTGRML  340 (430)
T ss_pred             ec---cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC------CcceeeeeeecCCceE
Confidence            99   999999999889999988764 3   678899999999999999      5999999999 45555

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=6.2e-12  Score=120.66  Aligned_cols=188  Identities=7%  Similarity=-0.003  Sum_probs=120.4

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASA  108 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~-~~~~i  108 (321)
                      -.....|||||+.+++.++.+.        +...||.++..++....+. ...+.+....|||||+.+++.... ....|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~--------~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGE--------RKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccC--------CCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            5668999999998555543211        2346899998776555554 356667789999999998876432 23478


Q ss_pred             EEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEc
Q 020756          109 TIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       109 ~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s  186 (321)
                      .++|+.+.....+  +........|+|||+.|++.+-.....+|+++|+.+++......... ....|||||++|+....
T Consensus       260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEc
Confidence            8889877666555  22223457899999999998733233589999998875533322221 23589999999998874


Q ss_pred             CCcee---ecCcEEEEeecCceeEEecc-CceEEEEEecCCCCCC
Q 020756          187 APRLQ---IDNGIKIFHHNGSLFFKKMF-DKLFQAEWKPVSPDKF  227 (321)
Q Consensus       187 ~~rl~---~d~~v~iw~~~g~~l~~~~~-~~~~~~~w~P~~~~~~  227 (321)
                      ...-.   ....+.+.++.+........ .......|+|++..++
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~  383 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIM  383 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEE
Confidence            21000   01346666665543322111 1223589999988665

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=1e-13  Score=134.74  Aligned_cols=181  Identities=14%  Similarity=0.244  Sum_probs=130.5

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--eecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      ...+++|+..-..+++.+++         .|...+|.|...+. .++  +.-.|+..++.+.|++.--.+++. |..|+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~---------nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliS-GSQDg~  157 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCST---------NGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILIS-GSQDGT  157 (839)
T ss_pred             ehhhcccccchhhhheeecC---------CCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEe-cCCCce
Confidence            34577898655555555432         15555666655433 333  333589999999999987777665 889999


Q ss_pred             EEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEE
Q 020756          108 ATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYF  181 (321)
Q Consensus       108 i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l  181 (321)
                      |++||++.+ ...++  ....+..+.|+|.-.+.+++++  ..|.+.+||++.- ++...+.+|  .+.++.|+|++.||
T Consensus       158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l  235 (839)
T KOG0269|consen  158 VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL  235 (839)
T ss_pred             EEEEeeecccccccccccchhhhceeeccCCCceEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence            999999654 33333  4567889999996554444443  5599999999854 566667776  78899999999999


Q ss_pred             EEEEcCCceeecCcEEEEeecCcee----EEeccCceEEEEEecCCCCCCCC
Q 020756          182 MTATTAPRLQIDNGIKIFHHNGSLF----FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~~g~~l----~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ||++      .|..++||+.++...    .......|..+.|+|..++.+..
T Consensus       236 ATGG------RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAt  281 (839)
T KOG0269|consen  236 ATGG------RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLAT  281 (839)
T ss_pred             eecC------CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhh
Confidence            9999      599999999975433    33344688899999988866643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.50  E-value=6.1e-13  Score=129.01  Aligned_cols=182  Identities=13%  Similarity=0.212  Sum_probs=140.2

Q ss_pred             CCCceEEEEEcCCcCC--CCc---e---eeeec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC
Q 020756            2 GSPASVQIYACGKDLQ--SQP---L---ARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT   72 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~--~~~---i---~~~~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~   72 (321)
                      |++-.|++|+...-..  +..   +   .++++ +..+...+..||||.+|++..   .|.+-+.||-.+--+++++   
T Consensus       473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL---LdnTVkVyflDtlKFflsL---  546 (888)
T KOG0306|consen  473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL---LDNTVKVYFLDTLKFFLSL---  546 (888)
T ss_pred             cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe---ccCeEEEEEecceeeeeee---
Confidence            5677899998875211  111   0   11221 456888999999999999853   3444444442222222222   


Q ss_pred             ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756           73 HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD  149 (321)
Q Consensus        73 ~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~  149 (321)
                            ..|.-||.++..|||++.++++  ..|..+++|-++ |+.-.+|  |...+.++.|-|+..++.++|   .|+.
T Consensus       547 ------YGHkLPV~smDIS~DSklivTg--SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g---KD~k  615 (888)
T KOG0306|consen  547 ------YGHKLPVLSMDISPDSKLIVTG--SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG---KDGK  615 (888)
T ss_pred             ------cccccceeEEeccCCcCeEEec--cCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec---Ccce
Confidence                  2488999999999999999984  678999999885 3445555  788999999999999999999   9999


Q ss_pred             EEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          150 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      |+-||-++.+++.++.+|  .+.+++.+|+|.|+++++.      |..+++|.-+-+.+
T Consensus       616 vKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh------D~sIRlwE~tde~~  668 (888)
T KOG0306|consen  616 VKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH------DKSIRLWERTDEIL  668 (888)
T ss_pred             EEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC------CceeEeeeccCcce
Confidence            999999999999999987  8999999999999999995      99999999876655

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.50  E-value=1.1e-13  Score=135.66  Aligned_cols=136  Identities=14%  Similarity=0.297  Sum_probs=111.2

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--------------------------------------------
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------------------------------------------  115 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--------------------------------------------  115 (321)
                      .|++.|-++.||+||++||+  ++.|+.|+||.+..                                            
T Consensus       265 ah~gaIw~mKFS~DGKyLAs--aGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~  342 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLAS--AGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG  342 (712)
T ss_pred             ccCCcEEEEEeCCCCceeee--cCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence            58999999999999999999  58899999995422                                            


Q ss_pred             -----------------ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEc
Q 020756          116 -----------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWS  175 (321)
Q Consensus       116 -----------------~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wS  175 (321)
                                       +++..|  |.+.|-.+.||-+ .+|++++   +|.+|+||++...+|++.|.+. .||+++|+
T Consensus       343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSS---MDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSS---MDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             cCCccccCCCccccccccchhhhhccchhheecccccC-CeeEecc---ccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                             011112  4556678899964 4888888   9999999999999999999987 79999999


Q ss_pred             c-CCCEEEEEEcCCceeecCcEEEEeecCcee-EE-eccCceEEEEEecCCCCCC
Q 020756          176 P-DGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK-KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       176 p-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~-~~~~~~~~~~w~P~~~~~~  227 (321)
                      | |.+||++|+      .|+.++||++....+ +- .-.+-|..++++|++.+.+
T Consensus       419 PvDDryFiSGS------LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av  467 (712)
T KOG0283|consen  419 PVDDRYFISGS------LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV  467 (712)
T ss_pred             ccCCCcEeecc------cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE
Confidence            9 899999999      599999999977666 22 2336789999999987544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.4e-13  Score=114.09  Aligned_cols=206  Identities=17%  Similarity=0.250  Sum_probs=149.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceee-e
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGL-V   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~-v   77 (321)
                      +.++.|+||.+.+..+.+.+..+.-....+-++.|-.  -|+.|+.+          +|.|.  +.++.-.++ -.+. .
T Consensus        30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc----------sYDgk--VIiWke~~g~w~k~~e   97 (299)
T KOG1332|consen   30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC----------SYDGK--VIIWKEENGRWTKAYE   97 (299)
T ss_pred             cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe----------ecCce--EEEEecCCCchhhhhh
Confidence            3578999999998432367888999999999999976  67777664          34443  333332222 1111 1


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEeCCcCeeeEEEcCC---C-----------Ce
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPK---G-----------KF  137 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~sPd---G-----------~~  137 (321)
                      --.|+..|++++|.|.+--|.++++..|+.|.|++.+..      .+..-|.-.+|++.|.|-   |           +.
T Consensus        98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr  177 (299)
T KOG1332|consen   98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR  177 (299)
T ss_pred             hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence            123789999999999877666666788999999987543      223338889999999997   6           56


Q ss_pred             EEEEccCCCCCcEEEEECCCC--eEEEeeeCC--CeeeEEEccCC----CEEEEEEcCCceeecCcEEEEeecCce----
Q 020756          138 LCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNGSL----  205 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~--~~i~~~~~~--~~~~~~wSpdG----~~l~t~~s~~rl~~d~~v~iw~~~g~~----  205 (321)
                      |+++|   .|..|+||+.+++  +.-.+++.|  .+.+++|+|.-    .+||+++      .|+++.||....+.    
T Consensus       178 lvSgG---cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S------qDg~viIwt~~~e~e~wk  248 (299)
T KOG1332|consen  178 LVSGG---CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS------QDGTVIIWTKDEEYEPWK  248 (299)
T ss_pred             eeccC---CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec------CCCcEEEEEecCccCccc
Confidence            89998   9999999999875  344456666  67889999963    4577777      69999999986431    


Q ss_pred             --eEEeccCceEEEEEecCCCCCCC
Q 020756          206 --FFKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       206 --l~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                        +.+.-...+|.++|++.+..+.-
T Consensus       249 ~tll~~f~~~~w~vSWS~sGn~LaV  273 (299)
T KOG1332|consen  249 KTLLEEFPDVVWRVSWSLSGNILAV  273 (299)
T ss_pred             ccccccCCcceEEEEEeccccEEEE
Confidence              23334567999999998765553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.49  E-value=1.2e-13  Score=128.00  Aligned_cols=191  Identities=15%  Similarity=0.202  Sum_probs=141.4

Q ss_pred             CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEE
Q 020756           18 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF   97 (321)
Q Consensus        18 ~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l   97 (321)
                      .+.+.+.+-+.-.+..+.|.|..-.|++....|         +...||.+..++. -.+.-..|..+|.++.|+++|..|
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD---------~~vklW~vy~~~~-~lrtf~gH~k~Vrd~~~s~~g~~f  273 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMD---------GLVKLWNVYDDRR-CLRTFKGHRKPVRDASFNNCGTSF  273 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCC---------ceEEEEEEecCcc-eehhhhcchhhhhhhhccccCCee
Confidence            345556666667778889999655565543322         3323444433333 233334689999999999999999


Q ss_pred             EEEEccCCCeEEEEeCC-CceeEEeC-CcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeE
Q 020756           98 AVVYGFMPASATIFNKK-CRPILELG-SGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTS  172 (321)
Q Consensus        98 ~~~~g~~~~~i~i~d~~-~~~~~~~~-~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~  172 (321)
                      ..+  .-|+.+++||+. +..+..|+ .....++.|+||+ +.+++++   .++.|..||+++++.+..+.+|  .+..+
T Consensus       274 LS~--sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs~kvvqeYd~hLg~i~~i  348 (503)
T KOG0282|consen  274 LSA--SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRSGKVVQEYDRHLGAILDI  348 (503)
T ss_pred             eee--ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec---CCCcEEEEeccchHHHHHHHhhhhheeee
Confidence            986  558999999995 55677785 4567899999999 5555566   7899999999999999888877  88999


Q ss_pred             EEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE----eccCceEEEEEecCCCCCCCC
Q 020756          173 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK----KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       173 ~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~----~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .|=++|+++++++.      |..++||+..-....+    ...-.+..+.-+|..+.+...
T Consensus       349 ~F~~~g~rFissSD------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ  403 (503)
T KOG0282|consen  349 TFVDEGRRFISSSD------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ  403 (503)
T ss_pred             EEccCCceEeeecc------CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence            99999999999994      8999999986443322    222355667888888877764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.49  E-value=3.5e-13  Score=121.25  Aligned_cols=140  Identities=18%  Similarity=0.318  Sum_probs=107.5

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-  158 (321)
                      .+.|+++.|+|.-..++.+ +.+|+.|.|||++. .+++.+ -...-|.|+|+|.+ +.++++  |.|.+++.||++.. 
T Consensus       187 ~Dti~svkfNpvETsILas-~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a--~ED~nlY~~DmR~l~  262 (433)
T KOG0268|consen  187 ADSISSVKFNPVETSILAS-CASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAA--NEDHNLYTYDMRNLS  262 (433)
T ss_pred             CCceeEEecCCCcchheee-eccCCceEEEecccCCccceeeeeccccceecCccc-cceeec--cccccceehhhhhhc
Confidence            4567788888866554444 45789999999964 455555 45667899999954 444444  38899999999876 


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce---e-EEeccCceEEEEEecCCCCCCCCcc
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---F-FKKMFDKLFQAEWKPVSPDKFGDIS  231 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~---l-~~~~~~~~~~~~w~P~~~~~~~~~~  231 (321)
                      ..+..+..|  .+.+++|||.|+-|++|+      .|.+|+||.++...   + +......|.++.|+-|..++++..+
T Consensus       263 ~p~~v~~dhvsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd  335 (433)
T KOG0268|consen  263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD  335 (433)
T ss_pred             ccchhhcccceeEEEeccCCCcchhcccc------ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC
Confidence            456666666  788999999999999999      79999999996432   2 4456678999999999999998753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.48  E-value=2.8e-12  Score=118.20  Aligned_cols=184  Identities=14%  Similarity=0.262  Sum_probs=130.1

Q ss_pred             CCCceEEEEEcCCcCC-CCceeeeecc---cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC-Cce-e
Q 020756            2 GSPASVQIYACGKDLQ-SQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THE-G   75 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~-~~~i~~~~~f---~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g-~~~-~   75 (321)
                      +..+.|++|++..... ...+..+..|   ...+-++.|++....|+..+..|           ..|.+++... ... .
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd-----------~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD-----------GKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC-----------CeEEEEEcCCCCCCCc
Confidence            4678999999998431 2234445554   34555889999999888765321           1245555442 212 2


Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCCe-EEEEccCCCCCcE
Q 020756           76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKF-LCLAGFGNLPGDM  150 (321)
Q Consensus        76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~~-l~~~g~~n~~g~i  150 (321)
                      .....|.++|++++|+|.+..++. .|..|+++.|||++.  .+++++  |...|..+.|||+-.. |+++|   .|+.+
T Consensus       266 ~~~~ah~~~vn~~~fnp~~~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl  341 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFNEFILA-TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRL  341 (422)
T ss_pred             ccccccCCceeEEEeCCCCCceEE-eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcE
Confidence            223348999999999998764443 378899999999964  466777  7889999999998664 55566   88999


Q ss_pred             EEEECCCC--------------eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          151 AFWDYVDG--------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       151 ~iwD~~~~--------------~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      .+||+..-              +++-...+|  .|..+.|+|+-.+++++.+     .||.++||.....+
T Consensus       342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva-----eDN~LqIW~~s~~i  407 (422)
T KOG0264|consen  342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA-----EDNILQIWQMAENI  407 (422)
T ss_pred             EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec-----CCceEEEeeccccc
Confidence            99998742              123333445  7888999999888887776     59999999876433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.4e-12  Score=124.30  Aligned_cols=198  Identities=10%  Similarity=0.084  Sum_probs=149.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-CCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEG   83 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~~~~   83 (321)
                      |.|.||++.+   ...+.....-...+...+|=..-+.+++-+.       .   ....+|..  +.. ++...+ .|.+
T Consensus        35 G~V~IWnyet---qtmVksfeV~~~PvRa~kfiaRknWiv~GsD-------D---~~IrVfny--nt~-ekV~~FeAH~D   98 (794)
T KOG0276|consen   35 GDVQIWNYET---QTMVKSFEVSEVPVRAAKFIARKNWIVTGSD-------D---MQIRVFNY--NTG-EKVKTFEAHSD   98 (794)
T ss_pred             CeeEEEeccc---ceeeeeeeecccchhhheeeeccceEEEecC-------C---ceEEEEec--ccc-eeeEEeecccc
Confidence            6788888887   5666555555555556666666666665321       1   22233433  333 333333 4899


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEeCCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECCCC
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .|.+++-+|.--++.+.  ..|.+|++||-..+    +.++-|...|.+++|+| |-+.+++++   +|++|++|.+.+.
T Consensus        99 yIR~iavHPt~P~vLts--SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s---LDrTVKVWslgs~  173 (794)
T KOG0276|consen   99 YIRSIAVHPTLPYVLTS--SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS---LDRTVKVWSLGSP  173 (794)
T ss_pred             ceeeeeecCCCCeEEec--CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee---ccccEEEEEcCCC
Confidence            99999999999998885  55669999987543    44444888999999999 567899998   9999999999888


Q ss_pred             eEEEeeeCC--CeeeEEEccCC--CEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAE--CSVTSEWSPDG--RYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG--~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .+..++++|  .+.++++-+-|  -||++++.      |..++|||++.+.+   ..+|...+..+.++|.-|.+++.
T Consensus       174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD------D~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD------DLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             CCceeeeccccCcceEEeccCCCcceEEecCC------CceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            888888888  78899997754  68999995      99999999977654   77899999999999999888865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.48  E-value=1.2e-12  Score=119.54  Aligned_cols=199  Identities=12%  Similarity=0.111  Sum_probs=144.6

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ....++||++.+   .+...+.+.++...+.+.+......+ +..+  .|.+-|         .+++... .+.-++--.
T Consensus       239 ~d~~~r~Wnvd~---~r~~~TLsGHtdkVt~ak~~~~~~~v-Vsgs--~DRtiK---------~WDl~k~-~C~kt~l~~  302 (459)
T KOG0288|consen  239 NDKNLRLWNVDS---LRLRHTLSGHTDKVTAAKFKLSHSRV-VSGS--ADRTIK---------LWDLQKA-YCSKTVLPG  302 (459)
T ss_pred             CCCceeeeeccc---hhhhhhhcccccceeeehhhccccce-eecc--ccchhh---------hhhhhhh-heecccccc
Confidence            456789999999   78889999888888888887766653 3221  222222         2222221 222222233


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..+.|+..+    ...+++|-+|.+|++||.+. ..+.+. ..+.+.++..+++|..|++++   .|.++.+.|+++.+.
T Consensus       303 S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  303 SQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEI  375 (459)
T ss_pred             ccccceEec----ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeec---CCCceeeeecccccE
Confidence            456666666    23455588899999999864 455555 456899999999999999998   888999999999888


Q ss_pred             EEeeeCC------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE--eccC--ceEEEEEecCCCCCCCC
Q 020756          161 LGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK--KMFD--KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       161 i~~~~~~------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~--~~~~--~~~~~~w~P~~~~~~~~  229 (321)
                      ...+.+.      +.+.+.|||||+|+++|++      |+.|+||++.+..+ ..  ....  .+..++|.|.+..+++.
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa  449 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA  449 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence            8777654      5667999999999999995      99999999966544 32  2233  59999999999888876


Q ss_pred             c
Q 020756          230 I  230 (321)
Q Consensus       230 ~  230 (321)
                      .
T Consensus       450 d  450 (459)
T KOG0288|consen  450 D  450 (459)
T ss_pred             c
Confidence            3

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.48  E-value=2.2e-12  Score=120.20  Aligned_cols=202  Identities=12%  Similarity=0.159  Sum_probs=148.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |+-+.|.||++..   .-.+....-++..+.-+.+|-...||+...          ..|+.-|+.+.. +.....+..+.
T Consensus        98 G~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs----------~gGdiiih~~~t-~~~tt~f~~~s  163 (673)
T KOG4378|consen   98 GQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVS----------DGGDIIIHGTKT-KQKTTTFTIDS  163 (673)
T ss_pred             CcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEec----------cCCcEEEEeccc-CccccceecCC
Confidence            7888999999986   344455555666677788888889988752          114333333222 11122333334


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe---CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .+.|.-+.+||..+.+.++.++ +|.+++||+.+. +++.+   |..+...|+|+|... +|++.|   +|..|++||..
T Consensus       164 gqsvRll~ys~skr~lL~~asd-~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG---~Dkki~~yD~~  239 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKRFLLSIASD-KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG---YDKKINIYDIR  239 (673)
T ss_pred             CCeEEEeecccccceeeEeecc-CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec---ccceEEEeecc
Confidence            5567789999999988887554 789999999764 66665   889999999999765 556677   99999999998


Q ss_pred             CCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce--e--EEeccCceEEEEEecCCCCCCC
Q 020756          157 DGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--F--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       157 ~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~--l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ..+....+.. +..+.++|+++|.+|+.+++      .+.+..||+.+..  +  ...|...|..++|+|.+ .++.
T Consensus       240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvlt  309 (673)
T KOG4378|consen  240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNS------KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLT  309 (673)
T ss_pred             cccccceeeecCCcceeeecCCceEEEeecC------CceEEEEecccCCCCceEeeecccceeEEEeeecc-eeee
Confidence            8776666655 47788999999999999996      8889999997642  2  55566679999999986 4443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=3e-12  Score=109.53  Aligned_cols=184  Identities=13%  Similarity=0.197  Sum_probs=137.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |..-.||||+.-.   +..|.+-+-...++.++.-+.|...++..            .|...++++++..+...+--..|
T Consensus        36 GsdrtvrLWNp~r---g~liktYsghG~EVlD~~~s~Dnskf~s~------------GgDk~v~vwDV~TGkv~Rr~rgH  100 (307)
T KOG0316|consen   36 GSDRTVRLWNPLR---GALIKTYSGHGHEVLDAALSSDNSKFASC------------GGDKAVQVWDVNTGKVDRRFRGH  100 (307)
T ss_pred             CCCceEEeecccc---cceeeeecCCCceeeeccccccccccccC------------CCCceEEEEEcccCeeeeecccc
Confidence            4445566666555   45555554444555555555555555443            24556888888776555555579


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ceeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .+.|+.++|+.+...++.  |.+|..+++||-+.   ++++.+.  ...+.++..+  +..|+.++   .||+++.||++
T Consensus       101 ~aqVNtV~fNeesSVv~S--gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS---~DGtvRtydiR  173 (307)
T KOG0316|consen  101 LAQVNTVRFNEESSVVAS--GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS---VDGTVRTYDIR  173 (307)
T ss_pred             cceeeEEEecCcceEEEe--ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec---cCCcEEEEEee
Confidence            999999999998876665  89999999999854   5777773  5667777776  66788887   99999999999


Q ss_pred             CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCc
Q 020756          157 DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDK  213 (321)
Q Consensus       157 ~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~  213 (321)
                      .|......-++.+++++||+||+..+.++      .|..+++.|- +|+++  |++|...
T Consensus       174 ~G~l~sDy~g~pit~vs~s~d~nc~La~~------l~stlrLlDk~tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  174 KGTLSSDYFGHPITSVSFSKDGNCSLASS------LDSTLRLLDKETGKLLKSYKGHKNM  227 (307)
T ss_pred             cceeehhhcCCcceeEEecCCCCEEEEee------ccceeeecccchhHHHHHhcccccc
Confidence            99999888889999999999999999988      5999999997 57776  6666653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.47  E-value=2e-12  Score=121.21  Aligned_cols=129  Identities=17%  Similarity=0.307  Sum_probs=100.0

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE----EeCCcCeeeEEEcCCCCe
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGSGPYNTVRWNPKGKF  137 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~----~~~~~~~~~~~~sPdG~~  137 (321)
                      ..||-|.-+...+..+.+.|.++|+++++||||.+||++  +..+++.+||+......    .||...+++++|||+..+
T Consensus       467 vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~--Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~  544 (603)
T KOG0318|consen  467 VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG--DASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKL  544 (603)
T ss_pred             EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe--ccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceE
Confidence            345544433334555677899999999999999999995  66789999999655433    459999999999999999


Q ss_pred             EEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          138 LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +++++   +|..|.||+++.- +.+..-.+|  .++.+.|--+.. +++++      .|..+++|++.
T Consensus       545 vATGS---lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t-vvSsG------~Da~iK~W~v~  602 (603)
T KOG0318|consen  545 VATGS---LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST-VVSSG------QDANIKVWNVT  602 (603)
T ss_pred             EEecc---ccceEEEEEccChhhheEeccccccCceeEEEecCce-EEecc------CcceeEEeccc
Confidence            99999   9999999999864 334333444  688999987755 55555      39999999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=4.8e-12  Score=117.01  Aligned_cols=203  Identities=11%  Similarity=0.156  Sum_probs=147.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec--
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l--   79 (321)
                      |..+.+|||.+.-.. +..+....|-+.......+.|+|.-.++.+       +..-|    +|.++........+..  
T Consensus       232 G~d~~lrifqvDGk~-N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s-------~rrky----~ysyDle~ak~~k~~~~~  299 (514)
T KOG2055|consen  232 GLDGTLRIFQVDGKV-NPKLQSIHLEKFPIQKAEFAPNGHSVIFTS-------GRRKY----LYSYDLETAKVTKLKPPY  299 (514)
T ss_pred             cCCCcEEEEEecCcc-ChhheeeeeccCccceeeecCCCceEEEec-------ccceE----EEEeeccccccccccCCC
Confidence            788999999998743 456777777778888899999999655543       22212    3555543332222211  


Q ss_pred             C-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           80 R-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        80 ~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      . .+..+..+..||++.+|++.  ...+-|.|...++ +.+.++ -.+.+..+.|+-||+.|++++   .+|+|++||++
T Consensus       300 g~e~~~~e~FeVShd~~fia~~--G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~---~~GeV~v~nl~  374 (514)
T KOG2055|consen  300 GVEEKSMERFEVSHDSNFIAIA--GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG---GTGEVYVWNLR  374 (514)
T ss_pred             CcccchhheeEecCCCCeEEEc--ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc---CCceEEEEecC
Confidence            1 24567889999999988886  4467888887754 456666 478899999999999999998   88999999999


Q ss_pred             CCeEEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-------EE--eccCceEEEEEecCCC
Q 020756          157 DGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-------FK--KMFDKLFQAEWKPVSP  224 (321)
Q Consensus       157 ~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------~~--~~~~~~~~~~w~P~~~  224 (321)
                      ...++..+...   ..++++-|++|+|||+++.      .+-|-|||.+....       ..  .-...|.++.|+|+..
T Consensus       375 ~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~------~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  375 QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD------SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             CcceEEEEeecCccceeeeeecCCCceEEeccC------cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            99999888764   5567899999999999993      66789999743221       11  1123678899999875


Q ss_pred             CCC
Q 020756          225 DKF  227 (321)
Q Consensus       225 ~~~  227 (321)
                      .+.
T Consensus       449 iLA  451 (514)
T KOG2055|consen  449 ILA  451 (514)
T ss_pred             hhh
Confidence            444

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.47  E-value=3e-12  Score=115.16  Aligned_cols=178  Identities=12%  Similarity=0.140  Sum_probs=141.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +.+..++||++.+   ++...+.+-.......++.|+...|+.... .  |       +.  +..+++....--+---.|
T Consensus       170 s~DrtikIwDlat---g~LkltltGhi~~vr~vavS~rHpYlFs~g-e--d-------k~--VKCwDLe~nkvIR~YhGH  234 (460)
T KOG0285|consen  170 SADRTIKIWDLAT---GQLKLTLTGHIETVRGVAVSKRHPYLFSAG-E--D-------KQ--VKCWDLEYNKVIRHYHGH  234 (460)
T ss_pred             CCCceeEEEEccc---CeEEEeecchhheeeeeeecccCceEEEec-C--C-------Ce--eEEEechhhhhHHHhccc
Confidence            3578899999999   888888888888888999999999987652 1  1       12  333333322111112246


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      -..|++++..|.-+.|++  +..|..+++||++++ .++.+  |..+|..+.+.|..-.|++++   .|++|++||+..+
T Consensus       235 lS~V~~L~lhPTldvl~t--~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S---~D~tvrlWDl~ag  309 (460)
T KOG0285|consen  235 LSGVYCLDLHPTLDVLVT--GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS---HDSTVRLWDLRAG  309 (460)
T ss_pred             cceeEEEeccccceeEEe--cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec---CCceEEEeeeccC
Confidence            788999999999998888  577999999999765 67777  889999999999999999999   9999999999999


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      +.+.++.+|  .+.+++.+|+-..||+++       .+.++-|++ .|..+
T Consensus       310 kt~~tlt~hkksvral~lhP~e~~fASas-------~dnik~w~~p~g~f~  353 (460)
T KOG0285|consen  310 KTMITLTHHKKSVRALCLHPKENLFASAS-------PDNIKQWKLPEGEFL  353 (460)
T ss_pred             ceeEeeecccceeeEEecCCchhhhhccC-------CccceeccCCccchh
Confidence            999888888  566789999999888888       678899998 45444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.46  E-value=9.5e-13  Score=122.73  Aligned_cols=212  Identities=9%  Similarity=0.147  Sum_probs=160.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeeccc--CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~--~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-   78 (321)
                      |--+.|+||+|..-....++++....+  .-....+-.|||+.|++-        |.  ..  +|.+|++... ..++. 
T Consensus       437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG--------Ge--as--tlsiWDLAap-Tprika  503 (705)
T KOG0639|consen  437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG--------GE--AS--TLSIWDLAAP-TPRIKA  503 (705)
T ss_pred             cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec--------cc--cc--eeeeeeccCC-Ccchhh
Confidence            567899999999854466787776553  334577889999999884        11  12  2444444332 22222 


Q ss_pred             -cCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           79 -LRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        79 -l~~-~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                       +.. .-.++.++.|||.+..+.|  +.|+.|.|||+..+ .+..|  |...+.||..++||..|-++|   +|.+|+-|
T Consensus       504 eltssapaCyALa~spDakvcFsc--csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG---lDntvRcW  578 (705)
T KOG0639|consen  504 ELTSSAPACYALAISPDAKVCFSC--CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG---LDNTVRCW  578 (705)
T ss_pred             hcCCcchhhhhhhcCCccceeeee--ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC---Cccceeeh
Confidence             222 2357889999999866665  56889999999765 55667  788999999999999999999   99999999


Q ss_pred             ECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecCCCCCCCCc
Q 020756          154 DYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       154 D~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      |++.+..+....- ..|.++-.+|+|.+++.+-      ..+.+.|-+.++..-|.  .|.+-|.++.|.+.+.+..+..
T Consensus       579 DlregrqlqqhdF~SQIfSLg~cP~~dWlavGM------ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  579 DLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM------ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             hhhhhhhhhhhhhhhhheecccCCCccceeeec------ccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence            9999877665433 3788999999999999999      47889999998866544  4556788999999999988875


Q ss_pred             -chhhhcc
Q 020756          231 -SELIKSV  237 (321)
Q Consensus       231 -~~~~~~~  237 (321)
                       |++...|
T Consensus       653 kDnlLnaw  660 (705)
T KOG0639|consen  653 KDNLLNAW  660 (705)
T ss_pred             chhhhhhc
Confidence             6666555

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.46  E-value=1.4e-11  Score=117.94  Aligned_cols=185  Identities=15%  Similarity=0.210  Sum_probs=120.4

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|.+|++..   ++. .....+......+.|+|||+.|++....    .     +...||.++..+.....+. .+.+.
T Consensus       214 ~~i~v~d~~~---g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~----~-----~~~~i~~~d~~~~~~~~l~-~~~~~  279 (417)
T TIGR02800       214 PEIYVQDLAT---GQR-EKVASFPGMNGAPAFSPDGSKLAVSLSK----D-----GNPDIYVMDLDGKQLTRLT-NGPGI  279 (417)
T ss_pred             cEEEEEECCC---CCE-EEeecCCCCccceEECCCCCEEEEEECC----C-----CCccEEEEECCCCCEEECC-CCCCC
Confidence            4678888876   332 2333344455678999999999876321    1     3345888888766444443 23345


Q ss_pred             eEEEEECcCCCEEEEEEccC-CCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           85 VHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      .....|+|||+.|+++.... ...|.++|+.+.....+  +......+.|+|+|++|+++........|++||+.++...
T Consensus       280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence            56789999999998764321 22688888866554444  4455667899999999999873222348999999876443


Q ss_pred             EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      ............|+|||++|++++...   ....+.+.+.+|...
T Consensus       360 ~l~~~~~~~~p~~spdg~~l~~~~~~~---~~~~l~~~~~~g~~~  401 (417)
T TIGR02800       360 VLTDTGLDESPSFAPNGRMILYATTRG---GRGVLGLVSTDGRFR  401 (417)
T ss_pred             EccCCCCCCCceECCCCCEEEEEEeCC---CcEEEEEEECCCcee
Confidence            333222345578999999999988521   112456666666654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.45  E-value=4.6e-12  Score=114.63  Aligned_cols=210  Identities=15%  Similarity=0.255  Sum_probs=151.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCe--eEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG--LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~--l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-   79 (321)
                      .+|.+|||+..-    +.+.+..-.......+.|--..+.  +++.++.  |.       .-.||.++........+.. 
T Consensus       123 YDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~--Dq-------tl~Lw~~~~~~~~~~~~~~~  189 (423)
T KOG0313|consen  123 YDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM--DQ-------TLRLWKWNVGENKVKALKVC  189 (423)
T ss_pred             cCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecC--Cc-------eEEEEEecCchhhhhHHhHh
Confidence            357889998854    667777766666666777543332  3333321  11       1124444433322222222 


Q ss_pred             -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--------------------------CceeEEe--CCcCeeeEE
Q 020756           80 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--------------------------CRPILEL--GSGPYNTVR  130 (321)
Q Consensus        80 -~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--------------------------~~~~~~~--~~~~~~~~~  130 (321)
                       .|+.+|.++.-.++|..|+.  |.-|..+.||+..                          ..++.++  |..+|..+.
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~S--gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~  267 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCS--GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV  267 (423)
T ss_pred             cccccceeEEEecCCCCeEEe--ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence             79999999999999999988  5778999999821                          1134444  788999999


Q ss_pred             EcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee---cCcee
Q 020756          131 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH---NGSLF  206 (321)
Q Consensus       131 ~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~---~g~~l  206 (321)
                      |++ ...+++++   .|.+|+.||+.++.++..+... ...+++.+|..++|+++++      |..+++||-   +|..+
T Consensus       268 w~d-~~v~yS~S---wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss------dr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  268 WSD-ATVIYSVS---WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS------DRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             EcC-CCceEeec---ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC------CCceeecCCCCCCCcee
Confidence            998 66777888   9999999999999888887776 7888999999999999997      999999998   34444


Q ss_pred             ---EEeccCceEEEEEecCCCCCCCCc--chhhhcc
Q 020756          207 ---FKKMFDKLFQAEWKPVSPDKFGDI--SELIKSV  237 (321)
Q Consensus       207 ---~~~~~~~~~~~~w~P~~~~~~~~~--~~~~~~~  237 (321)
                         +.+|...|..+.|+|...+.|...  |+..+.|
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW  373 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW  373 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence               667888999999999998888653  4444444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.43  E-value=7.2e-12  Score=107.22  Aligned_cols=200  Identities=11%  Similarity=0.147  Sum_probs=149.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec--
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l--   79 (321)
                      |.+-.|.+|++.+   ++.++...-+-+.+..+.||-+..-++.. +  .|.       .  +-.++........+++  
T Consensus        78 GgDk~v~vwDV~T---Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sg-s--fD~-------s--~r~wDCRS~s~ePiQild  142 (307)
T KOG0316|consen   78 GGDKAVQVWDVNT---GKVDRRFRGHLAQVNTVRFNEESSVVASG-S--FDS-------S--VRLWDCRSRSFEPIQILD  142 (307)
T ss_pred             CCCceEEEEEccc---CeeeeecccccceeeEEEecCcceEEEec-c--ccc-------e--eEEEEcccCCCCccchhh
Confidence            6678899999999   88888888788888899999887655442 1  222       2  3344443332333332  


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      +..+.|.++..+  +.+|+.  |..|++++.||++...+ ...-..+++++.||+||++++.+.   ++++|++.|..+|
T Consensus       143 ea~D~V~Si~v~--~heIva--GS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tG  215 (307)
T KOG0316|consen  143 EAKDGVSSIDVA--EHEIVA--GSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETG  215 (307)
T ss_pred             hhcCceeEEEec--ccEEEe--eccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee---ccceeeecccchh
Confidence            245678877776  344554  78899999999965444 344578999999999999999999   9999999999999


Q ss_pred             eEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEec-c--CceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM-F--DKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~-~--~~~~~~~w~P~~~~~~~~  229 (321)
                      +++..+.+|    .-..++++....++++++      .|+.+.+||+ ++.++.+.. .  ..+.++.++|.-..++.+
T Consensus       216 klL~sYkGhkn~eykldc~l~qsdthV~sgS------EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A  288 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS------EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA  288 (307)
T ss_pred             HHHHHhcccccceeeeeeeecccceeEEecc------CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe
Confidence            999998887    334588888889998888      6999999998 455553332 2  247899999988877765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.43  E-value=5e-11  Score=110.85  Aligned_cols=207  Identities=9%  Similarity=0.108  Sum_probs=129.6

Q ss_pred             CCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            3 SPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      ..+.|++|++.+.  +.  .+.... .......+.++|+|++|++....    .     +....|.++.++.....-...
T Consensus        10 ~~~~I~~~~~~~~--g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~----~-----~~i~~~~~~~~g~l~~~~~~~   77 (330)
T PRK11028         10 ESQQIHVWNLNHE--GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRP----E-----FRVLSYRIADDGALTFAAESP   77 (330)
T ss_pred             CCCCEEEEEECCC--CceeeeeEEe-cCCCCccEEECCCCCEEEEEECC----C-----CcEEEEEECCCCceEEeeeec
Confidence            4678999999641  22  222222 12456678999999998775321    1     222234443223211111122


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      ..+....+.++|+|+.|+++ ...++.+.+|++...     .+..+ +......+.++|+|++|++++.  .++.|.+||
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d  154 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSA-SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL--KEDRIRLFT  154 (330)
T ss_pred             CCCCceEEEECCCCCEEEEE-EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC--CCCEEEEEE
Confidence            33456789999999988887 345789999998532     22233 3345667889999999988773  358999999


Q ss_pred             CCCCeEEE--------eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---Cce--eEEec--cC------c
Q 020756          155 YVDGKQLG--------TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSL--FFKKM--FD------K  213 (321)
Q Consensus       155 ~~~~~~i~--------~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~--l~~~~--~~------~  213 (321)
                      +++...+.        ...+.....+.|+|||++++++..     .++.+.+|+++   |.+  +....  ..      .
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-----~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~  229 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-----LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW  229 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-----CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence            97632221        112235567899999999988874     48999999995   332  11111  01      1


Q ss_pred             eEEEEEecCCCCCCCC
Q 020756          214 LFQAEWKPVSPDKFGD  229 (321)
Q Consensus       214 ~~~~~w~P~~~~~~~~  229 (321)
                      ...+.++|+...+|..
T Consensus       230 ~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        230 AADIHITPDGRHLYAC  245 (330)
T ss_pred             ceeEEECCCCCEEEEe
Confidence            2257788998888865

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.43  E-value=3.4e-12  Score=122.23  Aligned_cols=205  Identities=12%  Similarity=0.196  Sum_probs=144.5

Q ss_pred             CCCceEEEEEcCCcCC--CCc-eeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eee-
Q 020756            2 GSPASVQIYACGKDLQ--SQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGL-   76 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~--~~~-i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~-   76 (321)
                      |.+|.|++|+++....  .++ ++....+..-+.++.--.+|+.|+.+ +.           .+.+.+|+..... -+. 
T Consensus        44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~-Ss-----------DtTVK~W~~~~~~~~c~s  111 (735)
T KOG0308|consen   44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA-SS-----------DTTVKVWNAHKDNTFCMS  111 (735)
T ss_pred             CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe-cC-----------CceEEEeecccCcchhHh
Confidence            6789999999998541  122 34444444444445545566655443 22           1223344332221 222 


Q ss_pred             eecCCCCCeEEEEE-CcCCCEEEEEEccCCCeEEEEeCCCc---eeEE--------e---CCcCeeeEEEcCCCCeEEEE
Q 020756           77 VPLRKEGPVHDVQW-SYSGSEFAVVYGFMPASATIFNKKCR---PILE--------L---GSGPYNTVRWNPKGKFLCLA  141 (321)
Q Consensus        77 v~l~~~~~v~~~~w-sP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~--------~---~~~~~~~~~~sPdG~~l~~~  141 (321)
                      .-..|.+.|.+++. .++...+|.  |..|+.|.|||+...   .+.+        +   +...+.+++-+|.|..|+.+
T Consensus       112 tir~H~DYVkcla~~ak~~~lvaS--gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG  189 (735)
T KOG0308|consen  112 TIRTHKDYVKCLAYIAKNNELVAS--GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG  189 (735)
T ss_pred             hhhcccchheeeeecccCceeEEe--cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence            22358999999999 666544444  788999999999632   2222        2   34568899999999888888


Q ss_pred             ccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEE
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQ  216 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~  216 (321)
                      |   ..+.|+|||.++++.+-.+.+|  ++-.+-.+.||+.++++++      |+.|++||+..+.+   +..|.+.+|.
T Consensus       190 g---tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIrlWdLgqQrCl~T~~vH~e~VWa  260 (735)
T KOG0308|consen  190 G---TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIRLWDLGQQRCLATYIVHKEGVWA  260 (735)
T ss_pred             C---cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC------CceEEeeeccccceeeeEEeccCceEE
Confidence            8   8899999999999988888888  7888999999999999997      99999999965544   5567778888


Q ss_pred             EEEecCCCCCCCC
Q 020756          217 AEWKPVSPDKFGD  229 (321)
Q Consensus       217 ~~w~P~~~~~~~~  229 (321)
                      +.-+|.-..+|+.
T Consensus       261 L~~~~sf~~vYsG  273 (735)
T KOG0308|consen  261 LQSSPSFTHVYSG  273 (735)
T ss_pred             EeeCCCcceEEec
Confidence            8888776767665

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.42  E-value=4e-11  Score=108.35  Aligned_cols=176  Identities=14%  Similarity=0.272  Sum_probs=129.4

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeeeec
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v~l   79 (321)
                      ++|-.++|+.+..   +..|+... |......+..|.+  +|+++..           .  .+|..++....  ...-..
T Consensus        65 ~qpr~Lkv~~~Kk---~~~ICe~~-fpt~IL~VrmNr~--RLvV~Le-----------e--~IyIydI~~MklLhTI~t~  125 (391)
T KOG2110|consen   65 KQPRKLKVVHFKK---KTTICEIF-FPTSILAVRMNRK--RLVVCLE-----------E--SIYIYDIKDMKLLHTIETT  125 (391)
T ss_pred             CCCceEEEEEccc---CceEEEEe-cCCceEEEEEccc--eEEEEEc-----------c--cEEEEecccceeehhhhcc
Confidence            4666788888877   67777776 4567888888874  5555532           1  14444444331  111111


Q ss_pred             -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc-EEEEE
Q 020756           80 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD-MAFWD  154 (321)
Q Consensus        80 -~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~-i~iwD  154 (321)
                       .+...+.++..++.+.++++-.....|.|.|||+ ...++..+  |.+.+-+++|||+|.+||+++   ..|+ |+|+.
T Consensus       126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS---eKGTVIRVf~  202 (391)
T KOG2110|consen  126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS---EKGTVIRVFS  202 (391)
T ss_pred             CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec---cCceEEEEEE
Confidence             2445577777777888999865556789999998 44556555  899999999999999999998   6664 67999


Q ss_pred             CCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          155 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       155 ~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      +.+|+++..|...    .+.+++||||+.+|.++++      ..+|+||.+....
T Consensus       203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~------TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN------TETVHIFKLEKVS  251 (391)
T ss_pred             cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC------CCeEEEEEecccc
Confidence            9999999999875    6778999999999888885      7899999985443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.42  E-value=8.9e-13  Score=122.92  Aligned_cols=170  Identities=16%  Similarity=0.246  Sum_probs=126.3

Q ss_pred             ecccCCCceeecc-eeEEEEEcCC--CceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--ee-E
Q 020756           49 SDVDKTNQSYYGE-SKLNYLTTDG--THEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PI-L  119 (321)
Q Consensus        49 ~d~d~t~~s~~g~-~~l~~l~~~g--~~~~~v~l~---~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~-~  119 (321)
                      +....+...|.|. ..+..|++.+  .....-.|+   .+..|.++...|||+.|++  |..-.++.|||+...  .+ .
T Consensus       426 tIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv--GGeastlsiWDLAapTprika  503 (705)
T KOG0639|consen  426 TISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV--GGEASTLSIWDLAAPTPRIKA  503 (705)
T ss_pred             EecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe--ccccceeeeeeccCCCcchhh
Confidence            4444455555433 3344444433  222222222   4678999999999999998  566779999999543  11 2


Q ss_pred             EeCC--cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756          120 ELGS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG  195 (321)
Q Consensus       120 ~~~~--~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~  195 (321)
                      .+..  -.+..++.|||.+.++.+.   .||+|.|||+.+...+..|.+|  .+.+|..|+||..|.|++      .||+
T Consensus       504 eltssapaCyALa~spDakvcFscc---sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG------lDnt  574 (705)
T KOG0639|consen  504 ELTSSAPACYALAISPDAKVCFSCC---SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG------LDNT  574 (705)
T ss_pred             hcCCcchhhhhhhcCCccceeeeec---cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC------Cccc
Confidence            2322  3467799999999988887   8999999999999999999998  788999999999999999      5999


Q ss_pred             EEEEee-cCceeEEecc-CceEEEEEecCCCCCCCC
Q 020756          196 IKIFHH-NGSLFFKKMF-DKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       196 v~iw~~-~g~~l~~~~~-~~~~~~~w~P~~~~~~~~  229 (321)
                      |+.||+ .|+.+.+..+ +.|.++.+.|...++.-.
T Consensus       575 vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG  610 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG  610 (705)
T ss_pred             eeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence            999999 4666655544 588999999998887743

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1.6e-11  Score=121.51  Aligned_cols=138  Identities=24%  Similarity=0.409  Sum_probs=110.0

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ..-++.+++++-+|+.+|.  |..|-.|++-++. ....+.+  |.+++.++.|+|.|.+||++.   .+|.|+|||+++
T Consensus        95 ftlp~r~~~v~g~g~~iaa--gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss---~dG~v~iw~~~~  169 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAA--GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS---CDGKVQIWDLQD  169 (933)
T ss_pred             eeccceEEEEecCCcEEEe--ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe---cCceEEEEEccc
Confidence            3568999999999999988  5778888888874 3344444  899999999999999999999   999999999999


Q ss_pred             CeEEEeeeCC----------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE----eccCceEEEEEecC
Q 020756          158 GKQLGTTRAE----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK----KMFDKLFQAEWKPV  222 (321)
Q Consensus       158 ~~~i~~~~~~----------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~----~~~~~~~~~~w~P~  222 (321)
                      +.+..++..-          .+..++|+|+|..|+...      +|+.|++|+..|..+ +.    .+...+..++|+|.
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP------VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeec------cCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            8766554431          345589999977777777      499999999876544 22    23345899999999


Q ss_pred             CCCCCCC
Q 020756          223 SPDKFGD  229 (321)
Q Consensus       223 ~~~~~~~  229 (321)
                      +.+|...
T Consensus       244 G~YiAAs  250 (933)
T KOG1274|consen  244 GKYIAAS  250 (933)
T ss_pred             CcEEeee
Confidence            9998876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.40  E-value=2.1e-13  Score=121.17  Aligned_cols=143  Identities=13%  Similarity=0.218  Sum_probs=122.0

Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeE--------E--eCCcCeeeEEEcCCCCeEEEEccCC
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL--------E--LGSGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~--------~--~~~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                      +.+..+..+.+..|||||++|+.  |..|+-|.+||... +...        .  ..+..+-|+.||-|...|++++   
T Consensus       208 IKFg~KSh~EcA~FSPDgqyLvs--gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs---  282 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSPDGQYLVS--GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS---  282 (508)
T ss_pred             eecccccchhheeeCCCCceEee--ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---
Confidence            33455677889999999999988  78899999998732 2222        1  2678899999999999999998   


Q ss_pred             CCCcEEEEECCCCeEEEeee-CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEE
Q 020756          146 LPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEW  219 (321)
Q Consensus       146 ~~g~i~iwD~~~~~~i~~~~-~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w  219 (321)
                      .||.|++|.+.+|.|+..|+ +|  .++++.||.|+..|++++      .|..++|--+ +|+++  +++|.+-+..+.|
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s------fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f  356 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS------FDQTVRIHGLKSGKCLKEFRGHSSYVNEATF  356 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc------ccceEEEeccccchhHHHhcCccccccceEE
Confidence            99999999999999999987 45  899999999999999999      4999999887 67777  7788899999999


Q ss_pred             ecCCCCCCCCc
Q 020756          220 KPVSPDKFGDI  230 (321)
Q Consensus       220 ~P~~~~~~~~~  230 (321)
                      .+++..+++..
T Consensus       357 t~dG~~iisaS  367 (508)
T KOG0275|consen  357 TDDGHHIISAS  367 (508)
T ss_pred             cCCCCeEEEec
Confidence            99999998763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.39  E-value=2.4e-11  Score=107.28  Aligned_cols=153  Identities=20%  Similarity=0.314  Sum_probs=118.0

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      ..+..+.|||.-..+++..         ++.|...+|-++..|.........+.+||.+++|+-||..+++  |.-|+.+
T Consensus        28 DsIS~l~FSP~~~~~~~A~---------SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~--g~~Dk~~   96 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAG---------SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS--GGCDKQA   96 (347)
T ss_pred             cchheeEeccccCceEEec---------ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe--eccCCce
Confidence            3456889999777776653         4557888898888776666666679999999999999988777  5778999


Q ss_pred             EEEeCCCceeEEe--CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEE
Q 020756          109 TIFNKKCRPILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMT  183 (321)
Q Consensus       109 ~i~d~~~~~~~~~--~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t  183 (321)
                      ++||+..+++..+  |.+++.++.|-+...  +|++++   .|.+|++||+++...+.++.-+ .+..+.  ---..++.
T Consensus        97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS---WDKTlKfWD~R~~~pv~t~~LPeRvYa~D--v~~pm~vV  171 (347)
T KOG0647|consen   97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS---WDKTLKFWDTRSSNPVATLQLPERVYAAD--VLYPMAVV  171 (347)
T ss_pred             EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecc---cccceeecccCCCCeeeeeeccceeeehh--ccCceeEE
Confidence            9999988777776  899999999998777  777777   9999999999988888887765 333221  12234555


Q ss_pred             EEcCCceeecCcEEEEeecC
Q 020756          184 ATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ++      .++.|.+|++.+
T Consensus       172 at------a~r~i~vynL~n  185 (347)
T KOG0647|consen  172 AT------AERHIAVYNLEN  185 (347)
T ss_pred             Ee------cCCcEEEEEcCC
Confidence            55      378888888743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.39  E-value=3.7e-11  Score=108.85  Aligned_cols=213  Identities=16%  Similarity=0.250  Sum_probs=141.8

Q ss_pred             CCCceEEEEEcCCcCC-CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceee----cceeEEEE---------
Q 020756            2 GSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY----GESKLNYL---------   67 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~-~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~----g~~~l~~l---------   67 (321)
                      |++..+++|.+..... -+.+....-+++.+-.+.=+++|+.++...   .|.+-+.+.    -++.+--.         
T Consensus       166 s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS---~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  166 SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS---WDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec---ccceeeecccCCCccccccccchhhhhhhh
Confidence            5677889999887320 112233336777777888889998876631   222111110    00000000         


Q ss_pred             --EcCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEc
Q 020756           68 --TTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        68 --~~~g~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g  142 (321)
                        ...+.....+.+ .|.++|.++.|++ ...++.+  .-|.+|+.||+... .+.++ .....+++.++|..++|++++
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~--SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs  319 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV--SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS  319 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcC-CCceEee--cccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence              001112223333 4899999999999 4445553  67899999999543 44444 788999999999999999998


Q ss_pred             cCCCCCcEEEEECCCC--e-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC--cee--EEeccCc
Q 020756          143 FGNLPGDMAFWDYVDG--K-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--SLF--FKKMFDK  213 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~--~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~l--~~~~~~~  213 (321)
                         .|..|.+||.+++  + ...++.+|  .+..+.|||...|++...+     .||.+++||+..  ..+  ...|.+.
T Consensus       320 ---sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S-----~D~t~klWDvRS~k~plydI~~h~DK  391 (423)
T KOG0313|consen  320 ---SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS-----YDNTVKLWDVRSTKAPLYDIAGHNDK  391 (423)
T ss_pred             ---CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe-----cCCeEEEEEeccCCCcceeeccCCce
Confidence               8999999998876  2 23445555  6888999999888887776     699999999943  244  4457789


Q ss_pred             eEEEEEecCCCCCCCC
Q 020756          214 LFQAEWKPVSPDKFGD  229 (321)
Q Consensus       214 ~~~~~w~P~~~~~~~~  229 (321)
                      |.++.|.-. ..|++.
T Consensus       392 vl~vdW~~~-~~IvSG  406 (423)
T KOG0313|consen  392 VLSVDWNEG-GLIVSG  406 (423)
T ss_pred             EEEEeccCC-ceEEec
Confidence            999999643 344444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.38  E-value=3.6e-12  Score=119.78  Aligned_cols=97  Identities=22%  Similarity=0.454  Sum_probs=82.7

Q ss_pred             ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCcee
Q 020756          116 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  191 (321)
Q Consensus       116 ~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~  191 (321)
                      +++..+  ..+.++.++|||||++|++.+   .||.++|+|..+.+++..++..  ...+++|||||+||++++      
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG------  351 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG------  351 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC------
Confidence            455544  677899999999999999999   9999999999998887776653  788999999999999999      


Q ss_pred             ecCcEEEEeecCc-ee--EEeccCceEEEEEec
Q 020756          192 IDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKP  221 (321)
Q Consensus       192 ~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P  221 (321)
                      .|.-|.||.+..+ .+  -++|.+.|..|+|.|
T Consensus       352 EDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  352 EDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            5999999999654 44  446888999999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.38  E-value=3.1e-12  Score=115.24  Aligned_cols=171  Identities=16%  Similarity=0.251  Sum_probs=125.3

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|.||+..-   ..|+.+.+..-.....+.+||--+.||..+..|         +..-||.+..... ...+.+  .-.-
T Consensus       168 ~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~sD---------rsIvLyD~R~~~P-l~KVi~--~mRT  232 (433)
T KOG0268|consen  168 QIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCASD---------RSIVLYDLRQASP-LKKVIL--TMRT  232 (433)
T ss_pred             eeeeccccc---CCccceeecCCCceeEEecCCCcchheeeeccC---------CceEEEecccCCc-cceeee--eccc
Confidence            578898887   678888888777778999999999998876433         2222444433332 222222  2345


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE-
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-  160 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~-  160 (321)
                      +.++|+|.+-.|  +.+++|..++.||++.-  ++..+  |-..+.++.|||.|+-+++++   .|.+|.||.++.+.. 
T Consensus       233 N~IswnPeafnF--~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs---yDksIRIf~~~~~~SR  307 (433)
T KOG0268|consen  233 NTICWNPEAFNF--VAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS---YDKSIRIFPVNHGHSR  307 (433)
T ss_pred             cceecCccccce--eeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc---ccceEEEeecCCCcch
Confidence            689999955444  44799999999999642  33333  667788999999999999999   899999999987643 


Q ss_pred             -EEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          161 -LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       161 -i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                       +..... ..+.++.||.|.+||++|+.      |..|++|.-.
T Consensus       308 diYhtkRMq~V~~Vk~S~Dskyi~SGSd------d~nvRlWka~  345 (433)
T KOG0268|consen  308 DIYHTKRMQHVFCVKYSMDSKYIISGSD------DGNVRLWKAK  345 (433)
T ss_pred             hhhhHhhhheeeEEEEeccccEEEecCC------Ccceeeeecc
Confidence             222222 27889999999999999995      9999999853

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=3.1e-11  Score=107.27  Aligned_cols=179  Identities=10%  Similarity=0.253  Sum_probs=119.9

Q ss_pred             CCceEEEEEcCCcCC--CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCce-ee-
Q 020756            3 SPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHE-GL-   76 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~--~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~-~~-   76 (321)
                      .++.||||++..|..  ...+++---.. -...+.|+||-+.+++.+..     |.+.+    +|-+.-  +|... .. 
T Consensus       106 ~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~-----g~~l~----vyk~~K~~dG~~~~~~v  175 (420)
T KOG2096|consen  106 GDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKR-----GNKLC----VYKLVKKTDGSGSHHFV  175 (420)
T ss_pred             CCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEcc-----CCEEE----EEEeeecccCCCCcccc
Confidence            468999999998652  12232221122 34456777777777665431     11111    222211  12110 01 


Q ss_pred             ------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCc--CeeeEEEcCCCCeEEEEccCCCCC
Q 020756           77 ------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG--PYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        77 ------v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~--~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                            +.-.|.-+|.++-...++.+|+.+  ..+.+|.|||+++..+..+...  .-...+.||+|+||+++|   ...
T Consensus       176 ~~D~~~f~~kh~v~~i~iGiA~~~k~imsa--s~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~g---FTp  250 (420)
T KOG2096|consen  176 HIDNLEFERKHQVDIINIGIAGNAKYIMSA--SLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSG---FTP  250 (420)
T ss_pred             cccccccchhcccceEEEeecCCceEEEEe--cCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEec---CCC
Confidence                  112256678888888889888887  5678999999999888888433  334578999999999999   556


Q ss_pred             cEEEEECC---CC-----eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          149 DMAFWDYV---DG-----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       149 ~i~iwD~~---~~-----~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +|.+|..-   .|     +.+-.+.+|  .++.++||++.+.+++++      .|+.++|||.+
T Consensus       251 DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS------kDG~wriwdtd  308 (420)
T KOG2096|consen  251 DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS------KDGKWRIWDTD  308 (420)
T ss_pred             CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe------cCCcEEEeecc
Confidence            89999753   22     234455666  688899999999999999      59999999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=2.9e-12  Score=129.37  Aligned_cols=209  Identities=18%  Similarity=0.306  Sum_probs=151.2

Q ss_pred             CCCceEEEEEcCCcC---CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            2 GSPASVQIYACGKDL---QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~---~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      +..|.|.+|+.....   ....+++++-+++.+..+.||+.+..++....           ++..|++|+++.. +....
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa-----------~~geI~iWDlnn~-~tP~~  154 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA-----------DDGEILIWDLNKP-ETPFT  154 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC-----------CCCcEEEeccCCc-CCCCC
Confidence            357889999987731   23357888888999999999999997776421           2223666666553 33332


Q ss_pred             c---CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe----CCcCeeeEEEcCCCC-eEEEEccCCCCCc
Q 020756           79 L---RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----GSGPYNTVRWNPKGK-FLCLAGFGNLPGD  149 (321)
Q Consensus        79 l---~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~----~~~~~~~~~~sPdG~-~l~~~g~~n~~g~  149 (321)
                      .   ...+.|++++|+-.-.+++.. +...+++.|||++.+ ++..+    +...++.+.|+|++. .|++++-.+....
T Consensus       155 ~~~~~~~~eI~~lsWNrkvqhILAS-~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv  233 (1049)
T KOG0307|consen  155 PGSQAPPSEIKCLSWNRKVSHILAS-GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV  233 (1049)
T ss_pred             CCCCCCcccceEeccchhhhHHhhc-cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence            2   135679999999866555443 455679999999654 66666    234578999999875 5555653344578


Q ss_pred             EEEEECCCC-eEEEeeeCC--CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEee-cCceeEEecc--CceEEEEEecC
Q 020756          150 MAFWDYVDG-KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPV  222 (321)
Q Consensus       150 i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~--~~~~~~~w~P~  222 (321)
                      |.+||++.- ..+..+++|  .+..++|++.+ ++|++++      .|+.+.+|+. +|+.+.....  +.+.++.|.|.
T Consensus       234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg------kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr  307 (1049)
T KOG0307|consen  234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG------KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR  307 (1049)
T ss_pred             eEeecccccCCchhhhcccccceeeeccCCCCchhhhccc------CCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence            999998754 455666666  89999999976 7777777      4999999998 5777766554  68999999999


Q ss_pred             CCCCCCC
Q 020756          223 SPDKFGD  229 (321)
Q Consensus       223 ~~~~~~~  229 (321)
                      .+.++..
T Consensus       308 ~P~~~A~  314 (1049)
T KOG0307|consen  308 NPSVMAA  314 (1049)
T ss_pred             Ccchhhh
Confidence            9988865

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.36  E-value=4.2e-11  Score=107.86  Aligned_cols=164  Identities=10%  Similarity=0.059  Sum_probs=128.8

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLC  139 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~  139 (321)
                      .+-++++..+......-.|...|..+++|+.--+++.+  ..|+.++.||+..+ .|...  |-..|.++..+|.-..|+
T Consensus       174 tikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~--gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~  251 (460)
T KOG0285|consen  174 TIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA--GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV  251 (460)
T ss_pred             eeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe--cCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEE
Confidence            34555655543332222488899999999999888886  66899999999665 44444  678899999999999999


Q ss_pred             EEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCce
Q 020756          140 LAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKL  214 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~  214 (321)
                      ++|   .|..++|||+++...+..+.+|  .+.++.+.|..--+++++      .|.+|++||+ .|+-+  ...|...+
T Consensus       252 t~g---rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S------~D~tvrlWDl~agkt~~tlt~hkksv  322 (460)
T KOG0285|consen  252 TGG---RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS------HDSTVRLWDLRAGKTMITLTHHKKSV  322 (460)
T ss_pred             ecC---CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec------CCceEEEeeeccCceeEeeeccccee
Confidence            999   9999999999999999999987  677888888666688888      4999999998 56655  45577789


Q ss_pred             EEEEEecCCCCCCCCcchhhhcc
Q 020756          215 FQAEWKPVSPDKFGDISELIKSV  237 (321)
Q Consensus       215 ~~~~w~P~~~~~~~~~~~~~~~~  237 (321)
                      ..++-+|....+.+...+.+++|
T Consensus       323 ral~lhP~e~~fASas~dnik~w  345 (460)
T KOG0285|consen  323 RALCLHPKENLFASASPDNIKQW  345 (460)
T ss_pred             eEEecCCchhhhhccCCccceec
Confidence            99999998877777655444444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=2.1e-10  Score=97.73  Aligned_cols=120  Identities=19%  Similarity=0.311  Sum_probs=99.3

Q ss_pred             EccCCCeEEEEeCCCc-eeEEe----C-----CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--C
Q 020756          101 YGFMPASATIFNKKCR-PILEL----G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  168 (321)
Q Consensus       101 ~g~~~~~i~i~d~~~~-~~~~~----~-----~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~  168 (321)
                      +|..|.+|++||++-+ .+.++    +     ...+..++..|.|++|+++-   .|....+||++.++.++.+..|  .
T Consensus       199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~---~dssc~lydirg~r~iq~f~phsad  275 (350)
T KOG0641|consen  199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH---ADSSCMLYDIRGGRMIQRFHPHSAD  275 (350)
T ss_pred             ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc---CCCceEEEEeeCCceeeeeCCCccc
Confidence            3788899999999644 33332    2     34578899999999999987   8889999999999999998776  7


Q ss_pred             eeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-------EEeccCceEEEEEecCCCCCCCC
Q 020756          169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-------FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +.++.|||.-.|+++++      +|+.|++-|++|.+-       ..+|.+.+.+..|+|+.-.+++.
T Consensus       276 ir~vrfsp~a~yllt~s------yd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  276 IRCVRFSPGAHYLLTCS------YDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS  337 (350)
T ss_pred             eeEEEeCCCceEEEEec------ccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence            88999999999999999      799999999988642       45678889999999987655543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.35  E-value=2.3e-11  Score=104.97  Aligned_cols=173  Identities=16%  Similarity=0.288  Sum_probs=129.2

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      +.--+|||++...  ..+.....-....+..+.|-...+.||..+          +.+.  +-+++...+ .....|...
T Consensus       120 ~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iLSSa----------dd~t--VRLWD~rTg-t~v~sL~~~  184 (334)
T KOG0278|consen  120 QEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCILSSA----------DDKT--VRLWDHRTG-TEVQSLEFN  184 (334)
T ss_pred             hHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCceEEeec----------cCCc--eEEEEeccC-cEEEEEecC
Confidence            3345788888763  344444445567788889988777766542          1133  334444333 233445567


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      .+|.++..+++|+++.+++|.   .|.+||.+. +.+..+ -...|.+...+|+-.+++.+|   .|+.++.||..+++.
T Consensus       185 s~VtSlEvs~dG~ilTia~gs---sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeE  258 (334)
T KOG0278|consen  185 SPVTSLEVSQDGRILTIAYGS---SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEE  258 (334)
T ss_pred             CCCcceeeccCCCEEEEecCc---eeEEeccccccceeeccCccccccccccCCCceEEecC---cceEEEEEeccCCce
Confidence            899999999999999998764   799999854 455555 356788899999998888888   899999999999988


Q ss_pred             EEee-eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          161 LGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       161 i~~~-~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +..+ ++|  .+.++.|||||+..++++      .|++|+||..+
T Consensus       259 i~~~nkgh~gpVhcVrFSPdGE~yAsGS------EDGTirlWQt~  297 (334)
T KOG0278|consen  259 IGSYNKGHFGPVHCVRFSPDGELYASGS------EDGTIRLWQTT  297 (334)
T ss_pred             eeecccCCCCceEEEEECCCCceeeccC------CCceEEEEEec
Confidence            8775 554  789999999999999998      59999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.33  E-value=1.7e-11  Score=115.27  Aligned_cols=164  Identities=13%  Similarity=0.305  Sum_probs=115.8

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEE-EcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL-TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l-~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      +-...-.|||||..|+..             |++.+.-+ +..|. .+.+....+.+|++++|.|++..+++|.|   +.
T Consensus       105 ~A~~~gRW~~dGtgLlt~-------------GEDG~iKiWSrsGM-LRStl~Q~~~~v~c~~W~p~S~~vl~c~g---~h  167 (737)
T KOG1524|consen  105 AAISSGRWSPDGAGLLTA-------------GEDGVIKIWSRSGM-LRSTVVQNEESIRCARWAPNSNSIVFCQG---GH  167 (737)
T ss_pred             hhhhhcccCCCCceeeee-------------cCCceEEEEeccch-HHHHHhhcCceeEEEEECCCCCceEEecC---Ce
Confidence            344456799999998775             55544444 44554 33333346789999999999999998744   36


Q ss_pred             EEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEE
Q 020756          108 ATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMT  183 (321)
Q Consensus       108 i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t  183 (321)
                      +.|=.+..+ .+...  |++-+-++.|||...+|+++|   .|...++||-....+..+..+ +.+++++|.|| +.++.
T Consensus       168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG---ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v  243 (737)
T KOG1524|consen  168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG---EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL  243 (737)
T ss_pred             EEEeecccccceeEEeccCcEEEEeecCccccceeecC---CceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence            777666433 23333  899999999999999999999   999999999854444333322 38999999999 66666


Q ss_pred             EEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCC
Q 020756          184 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ++       -|.++        +.+...+.+.+++|+||+..+..
T Consensus       244 ~S-------~nt~R--------~~~p~~GSifnlsWS~DGTQ~a~  273 (737)
T KOG1524|consen  244 WS-------YNTAR--------FSSPRVGSIFNLSWSADGTQATC  273 (737)
T ss_pred             ee-------eeeee--------ecCCCccceEEEEEcCCCceeec
Confidence            66       34444        33445567888899988876654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.33  E-value=4.7e-11  Score=115.86  Aligned_cols=177  Identities=16%  Similarity=0.115  Sum_probs=135.2

Q ss_pred             CCCceEEEEEcCCcCCCC-ce-e----eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756            2 GSPASVQIYACGKDLQSQ-PL-A----RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG   75 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~-~i-~----~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~   75 (321)
                      +++..++||++|.-.+.. ++ -    ....+.-++-.+.-+|+...|+...   .|++-+       ||.++ +.. -.
T Consensus       431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S---qDktaK-------iW~le-~~~-l~  498 (775)
T KOG0319|consen  431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS---QDKTAK-------IWDLE-QLR-LL  498 (775)
T ss_pred             cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc---ccccee-------eeccc-Cce-EE
Confidence            678899999999811111 11 1    1222445677788899876665542   455544       44444 222 22


Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      -+--.|...|-++.|+|..+.+++++|  |.+++||.+. ...+.+|  |...|-...|--+|++|++++   .+|-|++
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq~laT~Sg--D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~---adGliKl  573 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQLLATCSG--DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG---ADGLIKL  573 (775)
T ss_pred             EEeeCCccceEEEEeccccceeEeccC--CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc---CCCcEEE
Confidence            223358899999999999999999855  7799999994 4566777  778888899999999999999   9999999


Q ss_pred             EECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          153 WDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       153 wD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      |++++.+|+.++..|  .+..+.-+|++.+|+|++.      |+.|.+|.=
T Consensus       574 Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~------Dg~i~~wkD  618 (775)
T KOG0319|consen  574 WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG------DGRIIFWKD  618 (775)
T ss_pred             EeccchhhhhhhhhccceeEEEeecCccceeEecCC------CeEEEEeec
Confidence            999999999999988  6888999999999999995      999999974

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2e-10  Score=101.90  Aligned_cols=180  Identities=14%  Similarity=0.143  Sum_probs=131.4

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      +......+.++++|+.+++.+..|            .|.+.+.. +...+.+. .++..|..+.|--....++....-.|
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dD------------sl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d   79 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDD------------SLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKED   79 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCC------------eEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCC
Confidence            556778999999999998854221            23444443 33333333 45677888888665555544333346


Q ss_pred             CeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEE
Q 020756          106 ASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM  182 (321)
Q Consensus       106 ~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~  182 (321)
                      .+|+..++..+ -++-|  |...|+++.-+|-+..+++++   .|.+|++||++..++...+.......++|+|.|-++|
T Consensus        80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S---~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS---LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA  156 (311)
T ss_pred             CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecc---cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence            68888888544 34445  889999999999999999999   9999999999988887777666556679999999999


Q ss_pred             EEEcCCceeecCcEEEEeec---Ccee--EE---eccCceEEEEEecCCCCCCC
Q 020756          183 TATTAPRLQIDNGIKIFHHN---GSLF--FK---KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       183 t~~s~~rl~~d~~v~iw~~~---g~~l--~~---~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ++..      .+.|+|||+.   ....  +.   ....+..++.|+|++..++-
T Consensus       157 ~~~~------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  157 LANG------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             EecC------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence            9993      5599999983   2222  22   34568899999999998774

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=8.6e-11  Score=104.38  Aligned_cols=201  Identities=19%  Similarity=0.278  Sum_probs=132.2

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeeeecCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRK   81 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v~l~~   81 (321)
                      ..|+|-||++.++.   .-...+.+-..++.+.||++|+.|+... +|         .  .+.++++. |....++  ..
T Consensus        43 ~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS-~D---------~--si~lwDl~~gs~l~ri--rf  105 (405)
T KOG1273|consen   43 ANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSS-RD---------W--SIKLWDLLKGSPLKRI--RF  105 (405)
T ss_pred             cCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeec-CC---------c--eeEEEeccCCCceeEE--Ec
Confidence            36899999999953   4444455556788999999999997742 21         1  14455543 3333333  35


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcC----eeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGP----YNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~----~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ..||..++|+|..+..+++. -|.....+.++.. ++++.    ..+.    ..+..|.+.|++|+++.   ..|.+.||
T Consensus       106 ~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt---sKGkllv~  180 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT---SKGKLLVY  180 (405)
T ss_pred             cCccceeeeccccCCeEEEE-EecCCcEEEEecC-CceeeccCCCccccccccccccccCCCCEEEEec---CcceEEEE
Confidence            68999999999777666553 2333334444432 33332    1111    22346899999999987   88999999


Q ss_pred             ECCCCeEEEeeeCCC---e-----------------------------------------------------eeEEEccC
Q 020756          154 DYVDGKQLGTTRAEC---S-----------------------------------------------------VTSEWSPD  177 (321)
Q Consensus       154 D~~~~~~i~~~~~~~---~-----------------------------------------------------~~~~wSpd  177 (321)
                      |..+.+++..+.-..   +                                                     ..++||.|
T Consensus       181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            998876655432110   0                                                     11578889


Q ss_pred             CCEEEEEEcCCceeecCcEEEEee-cCcee--EEecc-CceEEEEEecCCCCCCCCc
Q 020756          178 GRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMF-DKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       178 G~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~-~~~~~~~w~P~~~~~~~~~  230 (321)
                      |.|+..+++     ....++||.- .|.++  +++.. ..+.++.|+|-.+.+.+..
T Consensus       261 geYv~a~s~-----~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~  312 (405)
T KOG1273|consen  261 GEYVCAGSA-----RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA  312 (405)
T ss_pred             ccEEEeccc-----cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc
Confidence            998888775     4678999997 46666  44444 5788999999988777653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.31  E-value=3.1e-11  Score=109.86  Aligned_cols=117  Identities=20%  Similarity=0.393  Sum_probs=95.1

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--------CceeEEe--CCcCeeeEEEcCCCC-eEEEEccCCCCC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--------CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPG  148 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--------~~~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g  148 (321)
                      .|.++|.++.|+|..+..+. +|..|.++.||++-        .+++..+  |...+..+.|+|... .|+++|   .|.
T Consensus        79 GHt~~vLDi~w~PfnD~vIA-SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag---~Dn  154 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIA-SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG---SDN  154 (472)
T ss_pred             CccccccccccCccCCceee-cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc---CCc
Confidence            48999999999997664433 27889999999872        2345555  788899999999765 566677   788


Q ss_pred             cEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          149 DMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      .|.+||+.+++.+.++.++ .+.+++|+.||.+|+|++      .|..|+|||. .|..+
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttc------kDKkvRv~dpr~~~~v  208 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTC------KDKKVRVIDPRRGTVV  208 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeec------ccceeEEEcCCCCcEe
Confidence            9999999999888888765 688899999999999998      5999999998 34444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=2.7e-12  Score=124.18  Aligned_cols=138  Identities=22%  Similarity=0.351  Sum_probs=111.2

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .|+.+|.++.|+++-..|+.  |..+++|++||+. .+.++++  |...+..+.|+|.|.|.+.++   .|+++.+||.+
T Consensus        68 ~hespIeSl~f~~~E~Llaa--gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS---tdtd~~iwD~R  142 (825)
T KOG0267|consen   68 GHESPIESLTFDTSERLLAA--GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS---TDTDLKIWDIR  142 (825)
T ss_pred             ccCCcceeeecCcchhhhcc--cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc---ccccceehhhh
Confidence            48999999999998766665  7888999999994 5556666  778888999999999997777   89999999998


Q ss_pred             CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCC
Q 020756          157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ..-|+..+..|  .+..+.|+|||++++.++.      |+.++|||.. |+++  +..|...+..+.++|..-.+.+
T Consensus       143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e------d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~  213 (825)
T KOG0267|consen  143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE------DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP  213 (825)
T ss_pred             ccCceeeecCCcceeEEEeecCCCceeeccCC------cceeeeecccccccccccccccccccccccCchhhhhcc
Confidence            77788888776  4556899999999999994      8999999994 5555  4556666667777776544333

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=4.1e-11  Score=106.57  Aligned_cols=171  Identities=18%  Similarity=0.236  Sum_probs=121.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee---eeec-
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPL-   79 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~---~v~l-   79 (321)
                      ...|.||++.    ++.+....-.+.......-||+|++|++...|.-   -+.+.     -.+.-+|....   ..+| 
T Consensus       208 dt~i~lw~lk----Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD---VkVwE-----~~f~kdG~fqev~rvf~Lk  275 (420)
T KOG2096|consen  208 DTKICLWDLK----GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD---VKVWE-----PIFTKDGTFQEVKRVFSLK  275 (420)
T ss_pred             CCcEEEEecC----CceeeeeccccccccceeeCCCCcEEEEecCCCC---ceEEE-----EEeccCcchhhhhhhheec
Confidence            4467888885    3667777777777778889999999999754421   11110     11223443322   2223 


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--------ceeEEe-------CCcCeeeEEEcCCCCeEEEEccC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL-------GSGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--------~~~~~~-------~~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      .|...|+.++|||++++++++  ..||+++|||.+-        +.+.++       +..++ .+..||.|+.|+++.  
T Consensus       276 GH~saV~~~aFsn~S~r~vtv--SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~--  350 (420)
T KOG2096|consen  276 GHQSAVLAAAFSNSSTRAVTV--SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF--  350 (420)
T ss_pred             cchhheeeeeeCCCcceeEEE--ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec--
Confidence            388899999999999999997  6789999998731        111221       23344 789999999998873  


Q ss_pred             CCCCcEEEEECCCCeEEEeeeC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          145 NLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i~~~~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                        ..+|.+|..++++..-.++.   .+|++++|++||+|+++++       |..+++..
T Consensus       351 --gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-------dr~vrv~~  400 (420)
T KOG2096|consen  351 --GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-------DRYVRVIR  400 (420)
T ss_pred             --CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-------ceeeeeec
Confidence              35899999998876655543   3899999999999999999       88888876

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=9.9e-11  Score=115.71  Aligned_cols=207  Identities=11%  Similarity=0.128  Sum_probs=154.0

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeeccee-EEEEEcCCCceeeee-cCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK-LNYLTTDGTHEGLVP-LRK   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~-l~~l~~~g~~~~~v~-l~~   81 (321)
                      -|.|++|++.-   +..+....-+.+.+..+.|+|++..++..             |.+. |..|+-.. ..+..+ +.|
T Consensus        30 sG~IQlWDYRM---~tli~rFdeHdGpVRgv~FH~~qplFVSG-------------GDDykIkVWnYk~-rrclftL~GH   92 (1202)
T KOG0292|consen   30 SGVIQLWDYRM---GTLIDRFDEHDGPVRGVDFHPTQPLFVSG-------------GDDYKIKVWNYKT-RRCLFTLLGH   92 (1202)
T ss_pred             Cceeeeehhhh---hhHHhhhhccCCccceeeecCCCCeEEec-------------CCccEEEEEeccc-ceehhhhccc
Confidence            47899999998   77777777778889999999998765432             1111 22222222 233333 358


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      -+.|..+.|++.=-.|+.+  +.|.+|+||+.. .+.+..+  |...|.|..|+|...+|++++   +|.+|+|||+...
T Consensus        93 lDYVRt~~FHheyPWIlSA--SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS---LDQTVRVWDisGL  167 (1202)
T KOG0292|consen   93 LDYVRTVFFHHEYPWILSA--SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS---LDQTVRVWDISGL  167 (1202)
T ss_pred             cceeEEeeccCCCceEEEc--cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec---ccceEEEEeecch
Confidence            8999999999998888886  557899999974 3444444  888999999999999999999   9999999998632


Q ss_pred             eE-----------------------------EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-
Q 020756          159 KQ-----------------------------LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-  206 (321)
Q Consensus       159 ~~-----------------------------i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-  206 (321)
                      ++                             ...+++|  .+.-++|+|.-..|++++.      |..|+||..+.... 
T Consensus       168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D------DRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETKAW  241 (1202)
T ss_pred             hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC------cceeeEEEeccccce
Confidence            11                             1123344  4566899999999999995      99999999865432 


Q ss_pred             ----EEeccCceEEEEEecCCCCCCCCc-chhhhccc
Q 020756          207 ----FKKMFDKLFQAEWKPVSPDKFGDI-SELIKSVG  238 (321)
Q Consensus       207 ----~~~~~~~~~~~~w~P~~~~~~~~~-~~~~~~~~  238 (321)
                          ..+|+..|..+.|+|....|++.. |..+..|.
T Consensus       242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             eehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence                667999999999999888888763 54444443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.30  E-value=6.5e-11  Score=116.27  Aligned_cols=169  Identities=16%  Similarity=0.291  Sum_probs=118.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecc-----cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            4 PASVQIYACGKDLQSQPLARRSFF-----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f-----~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      -|.|.+|++.++     +..++|+     +..+..+.-.--++.++..             |.+.+..++.++...-.-.
T Consensus       469 ~G~Id~fNmQSG-----i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa-------------~~~Gilkfw~f~~k~l~~~  530 (910)
T KOG1539|consen  469 KGTIDRFNMQSG-----IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA-------------GADGILKFWDFKKKVLKKS  530 (910)
T ss_pred             CCeEEEEEcccC-----eeecccccCccccCceeEEEecCCCceEEEc-------------cCcceEEEEecCCcceeee
Confidence            467888888762     4555664     2333333322222222221             2222343343333233333


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      +.-...+..+..+-....|+++  ..+-.|.++|..+. .++.|  |...++++.|||||++|++++   +|++|++||+
T Consensus       531 l~l~~~~~~iv~hr~s~l~a~~--~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDl  605 (910)
T KOG1539|consen  531 LRLGSSITGIVYHRVSDLLAIA--LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDL  605 (910)
T ss_pred             eccCCCcceeeeeehhhhhhhh--cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEec
Confidence            3445667778888888888875  55668999999654 44555  788999999999999999999   9999999999


Q ss_pred             CCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeec-CcEEEEee
Q 020756          156 VDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQID-NGIKIFHH  201 (321)
Q Consensus       156 ~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d-~~v~iw~~  201 (321)
                      -++.+|-.+.-. .++.+.+||+|.||||+.      +| ++|++|.-
T Consensus       606 pt~~lID~~~vd~~~~sls~SPngD~LAT~H------vd~~gIylWsN  647 (910)
T KOG1539|consen  606 PTGTLIDGLLVDSPCTSLSFSPNGDFLATVH------VDQNGIYLWSN  647 (910)
T ss_pred             cCcceeeeEecCCcceeeEECCCCCEEEEEE------ecCceEEEEEc
Confidence            999998777654 678899999999999999      46 89999963

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.30  E-value=6.7e-10  Score=96.78  Aligned_cols=156  Identities=17%  Similarity=0.287  Sum_probs=115.7

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-C--CCeEEEEeCC-------C-ceeEEe--CCcCeee
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-M--PASATIFNKK-------C-RPILEL--GSGPYNT  128 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~-~--~~~i~i~d~~-------~-~~~~~~--~~~~~~~  128 (321)
                      +.+.+|++..+ .+...++...+|..+.|+++|.+++++... |  .+.|.+||++       . +++..+  +...++.
T Consensus        74 ~t~kLWDv~tG-k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~  152 (327)
T KOG0643|consen   74 QTAKLWDVETG-KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS  152 (327)
T ss_pred             ceeEEEEcCCC-cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence            34556666554 344445567899999999999988886422 2  3478899985       2 346666  5678899


Q ss_pred             EEEcCCCCeEEEEccCCCCCcEEEEECCCCe-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      ..|+|-|++|+.+.   .+|.|.+||.++++ .+...+.|  .|+++++|+|..+++|++.      |.+-+|||+..-.
T Consensus       153 a~Wg~l~~~ii~Gh---e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~------Dttakl~D~~tl~  223 (327)
T KOG0643|consen  153 ALWGPLGETIIAGH---EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK------DTTAKLVDVRTLE  223 (327)
T ss_pred             eeecccCCEEEEec---CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc------Cccceeeecccee
Confidence            99999999999998   89999999999984 44443444  8999999999999999994      9999999986543


Q ss_pred             e-EEe-ccCceEEEEEecCCCCCC
Q 020756          206 F-FKK-MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       206 l-~~~-~~~~~~~~~w~P~~~~~~  227 (321)
                      + ... ....|..++.+|....++
T Consensus       224 v~Kty~te~PvN~aaisP~~d~Vi  247 (327)
T KOG0643|consen  224 VLKTYTTERPVNTAAISPLLDHVI  247 (327)
T ss_pred             eEEEeeecccccceecccccceEE
Confidence            3 222 234677777777544433

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=7.9e-12  Score=120.95  Aligned_cols=199  Identities=14%  Similarity=0.184  Sum_probs=142.9

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|-||.+...   .++.........+-.+.++++-..|+..+.          .|.  |.+|++......+.-..|...+
T Consensus        51 k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~Llaagsa----------sgt--iK~wDleeAk~vrtLtgh~~~~  115 (825)
T KOG0267|consen   51 KVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSA----------SGT--IKVWDLEEAKIVRTLTGHLLNI  115 (825)
T ss_pred             eeccccccCC---chhheeeccCCcceeeecCcchhhhccccc----------CCc--eeeeehhhhhhhhhhhccccCc
Confidence            3345555441   223333344455556667766444433210          133  4444554443333333578889


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      ..+.|+|.|.+++.  |..|+.+++||.+ .++.+.+  |...++.++|+|+|++++.++   .|..++|||+..|+.+.
T Consensus       116 ~sv~f~P~~~~~a~--gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~---ed~tvki~d~~agk~~~  190 (825)
T KOG0267|consen  116 TSVDFHPYGEFFAS--GSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG---EDNTVKIWDLTAGKLSK  190 (825)
T ss_pred             ceeeeccceEEecc--ccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC---Ccceeeeeccccccccc
Confidence            99999999999855  7889999999996 5566666  677889999999999999998   78999999999999999


Q ss_pred             eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEE--eccCceEEEEEecCCCCCCCCc
Q 020756          163 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       163 ~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~--~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      .|..|  .+..++|+|..-+++++++      |..+++||+..- .+-.  .....+....|+|+...+++..
T Consensus       191 ef~~~e~~v~sle~hp~e~Lla~Gs~------d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  191 EFKSHEGKVQSLEFHPLEVLLAPGSS------DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ccccccccccccccCchhhhhccCCC------CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence            99866  6777899999888888885      999999998643 3322  2345788889999887777653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.29  E-value=6.6e-11  Score=104.01  Aligned_cols=199  Identities=13%  Similarity=0.254  Sum_probs=136.3

Q ss_pred             eEEEEEcCCcCCCC-------ceeeee-cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-
Q 020756            6 SVQIYACGKDLQSQ-------PLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-   76 (321)
Q Consensus         6 ~v~v~~~~~~~~~~-------~i~~~~-~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-   76 (321)
                      ...||.||..- ++       .++... ---.....+.|-|++..++.++             ..+|.+++........ 
T Consensus        94 ~aaiw~ipe~~-~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-------------dn~i~l~~l~ess~~va  159 (370)
T KOG1007|consen   94 GAAIWQIPEPL-GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-------------DNNIVLWSLDESSKIVA  159 (370)
T ss_pred             eEEEEeccccc-CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-------------cCceEEEEcccCcchhe
Confidence            56899999732 11       111111 0012345689999999999984             2235555554432211 


Q ss_pred             -ee----cCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeCCCc-eeEEe---CCcCeeeEEEcCCCCeE-EEEccC
Q 020756           77 -VP----LRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFL-CLAGFG  144 (321)
Q Consensus        77 -v~----l~~~~~v~~~~wsP--~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---~~~~~~~~~~sPdG~~l-~~~g~~  144 (321)
                       +.    ..+.....+-+|||  ||..+++.   .++++..||+++. ....+   |...+..+.|+|+-+++ +++|  
T Consensus       160 ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g--  234 (370)
T KOG1007|consen  160 EVLSSESAEMRHSFTSGAWSPHHDGNQVATT---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG--  234 (370)
T ss_pred             eecccccccccceecccccCCCCccceEEEe---CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC--
Confidence             11    12455677889999  88899984   4679999999753 33333   66779999999998765 5566  


Q ss_pred             CCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecC-----------------
Q 020756          145 NLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNG-----------------  203 (321)
Q Consensus       145 n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g-----------------  203 (321)
                       .||.|+|||.+.- ..+..+..|  .+.++.|.|- .++|+++++      |..|.+|-...                 
T Consensus       235 -DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S------Ds~V~Lsca~svSSE~qi~~~~dese~e  307 (370)
T KOG1007|consen  235 -DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS------DSAVNLSCASSVSSEQQIEFEDDESESE  307 (370)
T ss_pred             -CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC------CceeEEEeccccccccccccccccccCc
Confidence             8999999998754 567776665  7889999995 677778876      88888884310                 


Q ss_pred             -------------cee--EEeccCceEEEEEecCCCCCCCCc
Q 020756          204 -------------SLF--FKKMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       204 -------------~~l--~~~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                                   .++  +..|.+.||.+.|+-..|++|..+
T Consensus       308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL  349 (370)
T KOG1007|consen  308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL  349 (370)
T ss_pred             chhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence                         011  556778999999999999999763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.29  E-value=9.8e-10  Score=102.16  Aligned_cols=206  Identities=13%  Similarity=0.157  Sum_probs=128.4

Q ss_pred             CceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cC
Q 020756            4 PASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LR   80 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~   80 (321)
                      .+.|.+|++...  +.  .+..... ....+.+.++|+|++|++....    .     +...+|.++.++.....+. +.
T Consensus        56 ~~~i~~~~~~~~--g~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~~----~-----~~v~v~~~~~~g~~~~~~~~~~  123 (330)
T PRK11028         56 EFRVLSYRIADD--GALTFAAESPL-PGSPTHISTDHQGRFLFSASYN----A-----NCVSVSPLDKDGIPVAPIQIIE  123 (330)
T ss_pred             CCcEEEEEECCC--CceEEeeeecC-CCCceEEEECCCCCEEEEEEcC----C-----CeEEEEEECCCCCCCCceeecc
Confidence            467888888631  22  1222222 2356789999999999875210    1     2223444433332222221 22


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeE-------Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL-------EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~-------~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      .....+.++++|+|++++++ ...++.|.+||+... .+.       .+ .......+.|+|+|++|+++..  .++.|.
T Consensus       124 ~~~~~~~~~~~p~g~~l~v~-~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~  200 (330)
T PRK11028        124 GLEGCHSANIDPDNRTLWVP-CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE--LNSSVD  200 (330)
T ss_pred             CCCcccEeEeCCCCCEEEEe-eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec--CCCEEE
Confidence            33456889999999988776 455679999998542 111       12 1223457899999999988762  368999


Q ss_pred             EEECCC--C--eEEEeeeCC--------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Ccee-EEecc---Cc
Q 020756          152 FWDYVD--G--KQLGTTRAE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF-FKKMF---DK  213 (321)
Q Consensus       152 iwD~~~--~--~~i~~~~~~--------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l-~~~~~---~~  213 (321)
                      +||++.  +  +.+..+...        ....+.++|||++|+++..     .++.|.+|+++  +..+ ...+.   ..
T Consensus       201 v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~~~~~~~  275 (330)
T PRK11028        201 VWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGHQPTETQ  275 (330)
T ss_pred             EEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEEEecccc
Confidence            999973  3  334333211        2235889999999999853     47899999983  3322 22221   24


Q ss_pred             eEEEEEecCCCCCCCC
Q 020756          214 LFQAEWKPVSPDKFGD  229 (321)
Q Consensus       214 ~~~~~w~P~~~~~~~~  229 (321)
                      ...+.++|++..+|..
T Consensus       276 p~~~~~~~dg~~l~va  291 (330)
T PRK11028        276 PRGFNIDHSGKYLIAA  291 (330)
T ss_pred             CCceEECCCCCEEEEE
Confidence            5578999999999865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.29  E-value=9.1e-11  Score=115.27  Aligned_cols=203  Identities=12%  Similarity=0.080  Sum_probs=149.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecc---cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee--ec
Q 020756            5 ASVQIYACGKDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL   79 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f---~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v--~l   79 (321)
                      .+.+.|++.+...|+.+-..+-|   ......+.-++.|+..++-.+.          |...+|.++..-- ....  .-
T Consensus       422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~----------G~Id~fNmQSGi~-r~sf~~~~  490 (910)
T KOG1539|consen  422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK----------GTIDRFNMQSGIH-RKSFGDSP  490 (910)
T ss_pred             ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC----------CeEEEEEcccCee-ecccccCc
Confidence            46788888886545544333322   2344566677888877764321          5555666643211 1111  12


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      .|.++|.+++....++.++.+  +.+|.+.+||.+.. .+.++ -...+..+.++-....++++.   .+-.|.++|..+
T Consensus       491 ah~~~V~gla~D~~n~~~vsa--~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~---ddf~I~vvD~~t  565 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSA--GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL---DDFSIRVVDVVT  565 (910)
T ss_pred             cccCceeEEEecCCCceEEEc--cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc---CceeEEEEEchh
Confidence            488999999999888887775  56899999999665 44555 245677888888888888876   788999999999


Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC-ceEEEEEecCCCCCCCC
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~-~~~~~~w~P~~~~~~~~  229 (321)
                      .+.+..+.+|  .+++++|||||++|++++      .|..|++||+ +|.++-....+ .+..++++|.+..+.+.
T Consensus       566 ~kvvR~f~gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~  635 (910)
T KOG1539|consen  566 RKVVREFWGHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV  635 (910)
T ss_pred             hhhhHHhhccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence            9999999877  799999999999999999      5999999998 77787555554 67789999998877765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.29  E-value=8e-11  Score=106.68  Aligned_cols=146  Identities=16%  Similarity=0.309  Sum_probs=109.1

Q ss_pred             CCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeCCCceeE------EeCCcCeeeEEEcCCCC-eEEEEccCCCCCcEE
Q 020756           81 KEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKCRPIL------ELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA  151 (321)
Q Consensus        81 ~~~~v~~~~wsP--~g~~l~~~~g~~~~~i~i~d~~~~~~~------~~~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~  151 (321)
                      |.+-=+.+.|||  .|. |+.  |+.-..|++|........      .-|...|..+.|||..+ .|++|+   .||.|.
T Consensus       210 hk~EGy~LdWSp~~~g~-Lls--GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS---~DgsIr  283 (440)
T KOG0302|consen  210 HKGEGYGLDWSPIKTGR-LLS--GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS---CDGSIR  283 (440)
T ss_pred             cCccceeeecccccccc-ccc--CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee---cCceEE
Confidence            556678999999  332 332  554557899977443222      12788899999999765 556677   999999


Q ss_pred             EEECCCC---eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee----cCcee--EEeccCceEEEEEe
Q 020756          152 FWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH----NGSLF--FKKMFDKLFQAEWK  220 (321)
Q Consensus       152 iwD~~~~---~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~----~g~~l--~~~~~~~~~~~~w~  220 (321)
                      |||++++   .++.+ ++|  .+..++|+.+-.+||++..      |+.++|||+    .|+.+  ++.|...++.+.|+
T Consensus       284 IWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~D------dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~  356 (440)
T KOG0302|consen  284 IWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGD------DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH  356 (440)
T ss_pred             EEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCC------CceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence            9999988   45554 444  7889999999889999984      889999998    34454  77899999999999


Q ss_pred             cCCCCCCCC--cchhhhcccc
Q 020756          221 PVSPDKFGD--ISELIKSVGS  239 (321)
Q Consensus       221 P~~~~~~~~--~~~~~~~~~~  239 (321)
                      |....++..  .++.+..|.+
T Consensus       357 p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             cccCceEEeccCCCcEEEEEe
Confidence            988777754  3555555655

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.28  E-value=3.2e-11  Score=104.06  Aligned_cols=137  Identities=15%  Similarity=0.270  Sum_probs=115.0

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      .|.+.|..+.|.-..+.|+..  ..++++++||.+. ..+.++ -..+++++.+|++|++|.++    ..+.|.|||.++
T Consensus       141 ghtg~Ir~v~wc~eD~~iLSS--add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia----~gssV~Fwdaks  214 (334)
T KOG0278|consen  141 GHTGGIRTVLWCHEDKCILSS--ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA----YGSSVKFWDAKS  214 (334)
T ss_pred             CCCCcceeEEEeccCceEEee--ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe----cCceeEEecccc
Confidence            378999999998877777774  5688999999964 466666 47899999999999998887    457899999999


Q ss_pred             CeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--E-EeccCceEEEEEecCCCCCCC
Q 020756          158 GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--F-KKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       158 ~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~-~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ...+..++.+ ++...+.+|+-.++++++      .|..++.||| +|+.+  + ++|++.|..+.|+|++....+
T Consensus       215 f~~lKs~k~P~nV~SASL~P~k~~fVaGg------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  215 FGLLKSYKMPCNVESASLHPKKEFFVAGG------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             ccceeeccCccccccccccCCCceEEecC------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence            9999999888 788899999998888888      4888999998 46554  3 789999999999999864443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.4e-11  Score=109.29  Aligned_cols=101  Identities=23%  Similarity=0.398  Sum_probs=85.7

Q ss_pred             eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756          118 ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG  195 (321)
Q Consensus       118 ~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~  195 (321)
                      ..++.....+++.||+.|.+|+++.   .+|.|-|||+.+...-..+.+|  .+++++||+||++|+|++.      |+.
T Consensus        18 ~~tld~~~a~~~~Fs~~G~~lAvGc---~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~------D~s   88 (405)
T KOG1273|consen   18 THTLDNPLAECCQFSRWGDYLAVGC---ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR------DWS   88 (405)
T ss_pred             ceeccCCccceEEeccCcceeeeec---cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC------Cce
Confidence            3445445589999999999999999   8999999999998766667776  8999999999999999994      999


Q ss_pred             EEEEee-cCceeEEeccC-ceEEEEEecCCCCCC
Q 020756          196 IKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKF  227 (321)
Q Consensus       196 v~iw~~-~g~~l~~~~~~-~~~~~~w~P~~~~~~  227 (321)
                      +.+||+ .|.++++..++ .++.+.|+|.....+
T Consensus        89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~  122 (405)
T KOG1273|consen   89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC  122 (405)
T ss_pred             eEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence            999998 67777777664 899999999765544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.7e-10  Score=105.78  Aligned_cols=177  Identities=12%  Similarity=0.196  Sum_probs=124.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeee-c
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVP-L   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~-l   79 (321)
                      |.+|.+|||+.|+   -..+....-...++-+|.|||||..|+.+.             ......|+...+ .-...+ .
T Consensus       163 g~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~dgk~lasig-------------~d~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  163 GTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSPDGKFLASIG-------------ADSARVWSVNTGAALARKTPF  226 (398)
T ss_pred             cccceEEEEecCc---chhhhhhHhhcCccccceeCCCCcEEEEec-------------CCceEEEEeccCchhhhcCCc
Confidence            6789999999999   566666666778899999999999998863             222445554433 111111 3


Q ss_pred             CCCCCeEEEEECcCC---CEEEEEEccCCCeEEEEeCC---C-c--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           80 RKEGPVHDVQWSYSG---SEFAVVYGFMPASATIFNKK---C-R--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g---~~l~~~~g~~~~~i~i~d~~---~-~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      ++......|.|+-|+   ..++.......+.+.++|+.   + +  +....  ....+.+++.|+||+++++++   ++|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT---~dG  303 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT---MDG  303 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec---cCC
Confidence            455667788998776   33332222222345555541   1 1  11111  456889999999999999999   899


Q ss_pred             cEEEEECCCCeEEEeeeC-C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          149 DMAFWDYVDGKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~-~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      .|-|++..+.+++...+. |  -|+.++|+||.+++++.++      ++...|..+..
T Consensus       304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~v  355 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLAV  355 (398)
T ss_pred             cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEee
Confidence            999999999988877654 4  7889999999999999664      88888877643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.26  E-value=2.7e-10  Score=100.46  Aligned_cols=180  Identities=17%  Similarity=0.299  Sum_probs=126.6

Q ss_pred             CCCceEEEEEcCCcCC---------CCce---eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc
Q 020756            2 GSPASVQIYACGKDLQ---------SQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT   69 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~---------~~~i---~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~   69 (321)
                      |+.|++.||++.+-+.         ..++   ...+.++-.+.++.|-|-.+.+....+  .|.         .|..++.
T Consensus        63 gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS--FDh---------tlKVWDt  131 (397)
T KOG4283|consen   63 GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS--FDH---------TLKVWDT  131 (397)
T ss_pred             CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc--ccc---------eEEEeec
Confidence            7889999999998320         0111   112234445667889998887766422  222         2556666


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCC
Q 020756           70 DGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        70 ~g~~~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                      +.. ...+.+..++.|+.-+|||-.. +-.++.|..+-+|++-|+... --+.+  |.+.|-.+.|||...+++..|  .
T Consensus       132 nTl-Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatg--s  208 (397)
T KOG4283|consen  132 NTL-QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATG--S  208 (397)
T ss_pred             ccc-eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEec--C
Confidence            665 3445556789999999999544 333444788889999999644 34444  889999999999999888765  3


Q ss_pred             CCCcEEEEECCCC-eEEEeee--------------CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          146 LPGDMAFWDYVDG-KQLGTTR--------------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       146 ~~g~i~iwD~~~~-~~i~~~~--------------~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      .||.|++||++.- -|...+.              +|  .+..++|+.||+++++.++      |+.+++|+.
T Consensus       209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt------d~r~r~wn~  275 (397)
T KOG4283|consen  209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT------DDRIRVWNM  275 (397)
T ss_pred             CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC------ccceEEeec
Confidence            7999999998743 2222222              12  4566999999999999996      999999997

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=2.6e-10  Score=107.99  Aligned_cols=136  Identities=16%  Similarity=0.319  Sum_probs=97.6

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCC
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPA  106 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~-g~~~~  106 (321)
                      ...+.++.||++|+-++++-.       -+- ....+|  +..+.  . +.---+++-+++-|+|.|+.++++. |+..|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyG-------fMP-Akvtif--nlr~~--~-v~df~egpRN~~~fnp~g~ii~lAGFGNL~G  336 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYG-------FMP-AKVTIF--NLRGK--P-VFDFPEGPRNTAFFNPHGNIILLAGFGNLPG  336 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEe-------ccc-ceEEEE--cCCCC--E-eEeCCCCCccceEECCCCCEEEEeecCCCCC
Confidence            467779999999998888621       110 111233  33443  1 2222478999999999999998874 67789


Q ss_pred             eEEEEeCC-CceeEEeCCcCeeeEEEcCCCCeEEEEccC---CCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccC
Q 020756          107 SATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPD  177 (321)
Q Consensus       107 ~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~---n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpd  177 (321)
                      .+.|||+. .+.+..+.-.....+.|+|||++|+++..-   -.|..|+||++ +|.++....-. ....++|-|.
T Consensus       337 ~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  337 DMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             ceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence            99999995 456777777777889999999999998742   13788999999 67776654433 4778888764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=7.6e-10  Score=100.05  Aligned_cols=166  Identities=21%  Similarity=0.319  Sum_probs=113.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--------e-
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--------E-   74 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--------~-   74 (321)
                      +-.||||+-..   ..+..-++-.+.++..|.|-|.+...+++.-.          +...+|-.+..+..        . 
T Consensus       119 ddvVriy~kss---t~pt~Lks~sQrnvtclawRPlsaselavgCr----------~gIciW~~s~tln~~r~~~~~s~~  185 (445)
T KOG2139|consen  119 DDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----------AGICIWSDSRTLNANRNIRMMSTH  185 (445)
T ss_pred             CcEEEEeccCC---CCCceecchhhcceeEEEeccCCcceeeeeec----------ceeEEEEcCccccccccccccccc
Confidence            45788888776   45555566667789999999987765554211          11112211111100        0 


Q ss_pred             -eee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756           75 -GLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGD  149 (321)
Q Consensus        75 -~~v-~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~  149 (321)
                       .++ .-.-.-+|.+++|++||..++.+ ...+..|.|||.++.   ++..++.+.+.-+.|||||.+|+.+.   .|+.
T Consensus       186 ~~qvl~~pgh~pVtsmqwn~dgt~l~tA-S~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt---~dav  261 (445)
T KOG2139|consen  186 HLQVLQDPGHNPVTSMQWNEDGTILVTA-SFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT---CDAV  261 (445)
T ss_pred             chhheeCCCCceeeEEEEcCCCCEEeec-ccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec---ccce
Confidence             011 11123689999999999999987 455779999999765   34445778899999999999999998   8999


Q ss_pred             EEEEECCC-CeEEEeeeCC-CeeeEEEccCCCEEEEEEc
Q 020756          150 MAFWDYVD-GKQLGTTRAE-CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       150 i~iwD~~~-~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s  186 (321)
                      ..+|+... ..+..-.-.. .+...+|||+|++|+.+.+
T Consensus       262 frlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  262 FRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             eeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence            99996543 3333322222 7788899999999998874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.25  E-value=1e-10  Score=106.85  Aligned_cols=138  Identities=19%  Similarity=0.355  Sum_probs=104.1

Q ss_pred             CCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCC-----Cc--ee---EEe--CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           81 KEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK-----CR--PI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~-----~~--~~---~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                      ...+|+.+.|.+++. .|++  +..|..|+||-+.     +.  .+   ..+  |...+|.++|+|+|..|++++   .+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT--~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~---D~   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLAT--AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG---DG   86 (434)
T ss_pred             CCCceEEEEeccCcccceec--ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC---CC
Confidence            456899999999877 7777  4568899999651     11  11   122  788999999999999999999   89


Q ss_pred             CcEEEEECC--------C--------CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE
Q 020756          148 GDMAFWDYV--------D--------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  208 (321)
Q Consensus       148 g~i~iwD~~--------~--------~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~  208 (321)
                      |.|.+|-..        +        .........|  ++..++|+||+.++++++      +||.+++||+. |.++..
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s------~dns~~l~Dv~~G~l~~~  160 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS------VDNSVRLWDVHAGQLLAI  160 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee------ccceEEEEEeccceeEee
Confidence            999999765        2        1112223333  889999999999999999      79999999995 554432


Q ss_pred             --eccCceEEEEEecCCCCCCCC
Q 020756          209 --KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       209 --~~~~~~~~~~w~P~~~~~~~~  229 (321)
                        .|...+..++|.|...++.+.
T Consensus       161 ~~dh~~yvqgvawDpl~qyv~s~  183 (434)
T KOG1009|consen  161 LDDHEHYVQGVAWDPLNQYVASK  183 (434)
T ss_pred             ccccccccceeecchhhhhhhhh
Confidence              355567789999987776654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.25  E-value=1.4e-11  Score=110.53  Aligned_cols=185  Identities=11%  Similarity=0.226  Sum_probs=132.0

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRK   81 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~   81 (321)
                      .++.|+||++.+   ++++.+.--+-..+..+.+|.  .++ +.++.|     .    ...+|.+..-.. .-..+.+.|
T Consensus       255 SDsTvrvWDv~t---ge~l~tlihHceaVLhlrf~n--g~m-vtcSkD-----r----siaVWdm~sps~it~rrVLvGH  319 (499)
T KOG0281|consen  255 SDSTVRVWDVNT---GEPLNTLIHHCEAVLHLRFSN--GYM-VTCSKD-----R----SIAVWDMASPTDITLRRVLVGH  319 (499)
T ss_pred             CCceEEEEeccC---CchhhHHhhhcceeEEEEEeC--CEE-EEecCC-----c----eeEEEeccCchHHHHHHHHhhh
Confidence            468899999999   788766555555666777765  344 333322     1    222454443222 123455679


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|+.+.|+.  ++++.+  ..|.+|++|+.. ++.+.++  |...+-|+.|.  |+++++++   .|.+|++||...|
T Consensus       320 rAaVNvVdfd~--kyIVsA--SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS---SDntIRlwdi~~G  390 (499)
T KOG0281|consen  320 RAAVNVVDFDD--KYIVSA--SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS---SDNTIRLWDIECG  390 (499)
T ss_pred             hhheeeecccc--ceEEEe--cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC---CCceEEEEecccc
Confidence            99999999974  477776  447899999994 5666666  67778888886  89999998   8899999999999


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce---------e---EEeccCceEEEEE
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---------F---FKKMFDKLFQAEW  219 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~---------l---~~~~~~~~~~~~w  219 (321)
                      .++..+++|  -+.++.|  |.+.|+++.      +|+.++|||+...+         +   ...|.+.|..+.|
T Consensus       391 ~cLRvLeGHEeLvRciRF--d~krIVSGa------YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF  457 (499)
T KOG0281|consen  391 ACLRVLEGHEELVRCIRF--DNKRIVSGA------YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF  457 (499)
T ss_pred             HHHHHHhchHHhhhheee--cCceeeecc------ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee
Confidence            999999998  3455665  778899999      79999999995321         1   2345556666666

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.25  E-value=1.6e-09  Score=98.15  Aligned_cols=201  Identities=17%  Similarity=0.276  Sum_probs=130.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |.+.-.++|+...+   .....+......++.|.||..   |++++..  +..       ..|..++.... .....+..
T Consensus        23 Gs~~Gyk~~~~~~~---~k~~~~~~~~~~IvEmLFSSS---LvaiV~~--~qp-------r~Lkv~~~Kk~-~~ICe~~f   86 (391)
T KOG2110|consen   23 GSKDGYKIFSCSPF---EKCFSKDTEGVSIVEMLFSSS---LVAIVSI--KQP-------RKLKVVHFKKK-TTICEIFF   86 (391)
T ss_pred             cCCCceeEEecCch---HHhhcccCCCeEEEEeecccc---eeEEEec--CCC-------ceEEEEEcccC-ceEEEEec
Confidence            44445556666552   222222333445667777653   4444322  111       12455555443 33444445


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEeCC---cC--eeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELGS---GP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~~---~~--~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      ..+|.++..+-+  +|+|+  - ...|.|||++. +.++++..   .+  +..+..|+.+.+|+.-+.. ..|+|.|||+
T Consensus        87 pt~IL~VrmNr~--RLvV~--L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-t~GdV~l~d~  160 (391)
T KOG2110|consen   87 PTSILAVRMNRK--RLVVC--L-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-TSGDVVLFDT  160 (391)
T ss_pred             CCceEEEEEccc--eEEEE--E-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-CCceEEEEEc
Confidence            567888888753  46654  1 23599999965 45566632   22  4445555566799996533 2589999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC----ceEEEEEecCCCCCCC
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD----KLFQAEWKPVSPDKFG  228 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~----~~~~~~w~P~~~~~~~  228 (321)
                      .+.+.+..+.+|  .+.+++||+||.+||||+.     ...-|+++++ +|+++++...+    .+|+++|+|+.+.+..
T Consensus       161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASe-----KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  161 INLQPVNTINAHKGPLAALAFSPDGTLLATASE-----KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             ccceeeeEEEecCCceeEEEECCCCCEEEEecc-----CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            999999999988  6888999999999999994     2334899998 68888766554    7999999999987775


Q ss_pred             C
Q 020756          229 D  229 (321)
Q Consensus       229 ~  229 (321)
                      .
T Consensus       236 s  236 (391)
T KOG2110|consen  236 S  236 (391)
T ss_pred             e
Confidence            5

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.25  E-value=6e-11  Score=114.13  Aligned_cols=169  Identities=21%  Similarity=0.317  Sum_probs=131.2

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      .+.++.|-|||+-|++.+             ...|++.+.+.+..-+.--.|++.|++++||.||+.|+.  |..|..+.
T Consensus        14 ci~d~afkPDGsqL~lAA-------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFAS--G~aDK~VI   78 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS--GSADKSVI   78 (1081)
T ss_pred             chheeEECCCCceEEEec-------------CCEEEEEeCCCcccccccccccceEEEEEEccCCceecc--CCCceeEE
Confidence            677899999999998864             234677777655332322358999999999999999998  78899999


Q ss_pred             EEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcC
Q 020756          110 IFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTA  187 (321)
Q Consensus       110 i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~  187 (321)
                      +|+-+-+.+... |...+.++.|+|-...|++++   + .+.-+|..+.. .+..... ..+.+++|..||++|+.+-  
T Consensus        79 ~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCs---L-sdFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~--  151 (1081)
T KOG1538|consen   79 IWTSKLEGILKYSHNDAIQCMSFNPITHQLASCS---L-SDFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGM--  151 (1081)
T ss_pred             EecccccceeeeccCCeeeEeecCchHHHhhhcc---h-hhccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEec--
Confidence            999887777777 888999999999999999987   3 35668876543 2332322 2677899999999999999  


Q ss_pred             CceeecCcEEEEeecCceeEEe-----ccCceEEEEEecCCC
Q 020756          188 PRLQIDNGIKIFHHNGSLFFKK-----MFDKLFQAEWKPVSP  224 (321)
Q Consensus       188 ~rl~~d~~v~iw~~~g~~l~~~-----~~~~~~~~~w~P~~~  224 (321)
                          .+++|.|-+-+|+.-...     ..+.++.++|+|...
T Consensus       152 ----~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  152 ----FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             ----cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCC
Confidence                499999998888754222     446899999999764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.25  E-value=1.4e-09  Score=96.74  Aligned_cols=178  Identities=23%  Similarity=0.256  Sum_probs=118.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCC--eeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST--GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~--~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      |.+-.|+||+++.   +.++....-..+....+.|.+.-.  .|+..+ .|         |..-+|.+   +.-+..-.+
T Consensus        60 ssDetI~IYDm~k---~~qlg~ll~HagsitaL~F~~~~S~shLlS~s-dD---------G~i~iw~~---~~W~~~~sl  123 (362)
T KOG0294|consen   60 SSDETIHIYDMRK---RKQLGILLSHAGSITALKFYPPLSKSHLLSGS-DD---------GHIIIWRV---GSWELLKSL  123 (362)
T ss_pred             CCCCcEEEEeccc---hhhhcceeccccceEEEEecCCcchhheeeec-CC---------CcEEEEEc---CCeEEeeee
Confidence            4566899999999   677777777777777888887654  554431 11         22222322   222222222


Q ss_pred             -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCcee--EEeCCcCeeeEEEcCCCCeEEEEcc------------
Q 020756           80 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPI--LELGSGPYNTVRWNPKGKFLCLAGF------------  143 (321)
Q Consensus        80 -~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~--~~~~~~~~~~~~~sPdG~~l~~~g~------------  143 (321)
                       .|.+.|++++.+|.|+.-+.+  +.|..+.+||+ ++..-  ..+.+ ....+.|+|.|.++++.+.            
T Consensus       124 K~H~~~Vt~lsiHPS~KLALsV--g~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~  200 (362)
T KOG0294|consen  124 KAHKGQVTDLSIHPSGKLALSV--GGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRNKIDIYQLDNAS  200 (362)
T ss_pred             cccccccceeEecCCCceEEEE--cCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEeccEEEEEecccHh
Confidence             378889999999999866666  33789999998 44433  33322 2223788888875555421            


Q ss_pred             ------------------------CCCCCcEEEEECCCCeEEEeeeCC--CeeeEE--EccCCCEEEEEEcCCceeecCc
Q 020756          144 ------------------------GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE--WSPDGRYFMTATTAPRLQIDNG  195 (321)
Q Consensus       144 ------------------------~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~--wSpdG~~l~t~~s~~rl~~d~~  195 (321)
                                              |..++.|.+||.++..+...+.+|  .+-.+.  =.|++.||+++++      |+.
T Consensus       201 v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS------DG~  274 (362)
T KOG0294|consen  201 VFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS------DGF  274 (362)
T ss_pred             HhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc------Cce
Confidence                                    014677888888888888888877  344444  3678999999997      999


Q ss_pred             EEEEeecCc
Q 020756          196 IKIFHHNGS  204 (321)
Q Consensus       196 v~iw~~~g~  204 (321)
                      |++||++-.
T Consensus       275 I~vWd~~~~  283 (362)
T KOG0294|consen  275 IKVWDIDME  283 (362)
T ss_pred             EEEEEcccc
Confidence            999999654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.24  E-value=3.2e-11  Score=115.37  Aligned_cols=110  Identities=20%  Similarity=0.419  Sum_probs=91.5

Q ss_pred             CCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC----------ceeEEeCCcCeeeEEEcCCC-CeEEEEccCCCCC
Q 020756           81 KEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----------RPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPG  148 (321)
Q Consensus        81 ~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~----------~~~~~~~~~~~~~~~~sPdG-~~l~~~g~~n~~g  148 (321)
                      ....|.|+.|.| |.+.|++.  +.++.|.||.+..          +.+.+.|...+.+++|+|-. ..|++++   .|.
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa--~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as---yd~  700 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVA--TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS---YDS  700 (1012)
T ss_pred             cCceeeecccCCCChHHeeec--ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh---ccc
Confidence            456799999999 56688884  7789999998732          24456688899999999965 4666676   789


Q ss_pred             cEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          149 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +|++||+.+++....+.+|  .|..++|||||+.+++.+      .|+.+++|+-
T Consensus       701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc------KDg~~rVy~P  749 (1012)
T KOG1445|consen  701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC------KDGTLRVYEP  749 (1012)
T ss_pred             eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee------cCceEEEeCC
Confidence            9999999999888888887  799999999999999999      4888888876

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.24  E-value=5.6e-11  Score=111.90  Aligned_cols=146  Identities=14%  Similarity=0.243  Sum_probs=117.2

Q ss_pred             EEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756           66 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        66 ~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      +++..+.-+..+. .|.+.|.+-.|+|||.-|+++  .+||.|++|...+....++  ...++.|++|.|+.+.++++. 
T Consensus        89 il~k~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~--GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-  164 (737)
T KOG1524|consen   89 ILNKSARVERSIS-AHAAAISSGRWSPDGAGLLTA--GEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-  164 (737)
T ss_pred             Eecccchhhhhhh-hhhhhhhhcccCCCCceeeee--cCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence            3344444333333 478999999999999998886  6799999999887666555  467899999999999999983 


Q ss_pred             CCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEE
Q 020756          144 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEW  219 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w  219 (321)
                         .+.++|=-+.-...+-...+|  -+.+++|++....|++++      .|-.++|||-.|+.++..  |.-.+.+++|
T Consensus       165 ---g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG------ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~  235 (737)
T KOG1524|consen  165 ---GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG------EDFRFKIWDAQGANLFTSAAEEYAITSVAF  235 (737)
T ss_pred             ---CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC------CceeEEeecccCcccccCChhccceeeeee
Confidence               467888777777667677777  577899999999999999      599999999999999654  4457999999


Q ss_pred             ecCCC
Q 020756          220 KPVSP  224 (321)
Q Consensus       220 ~P~~~  224 (321)
                      .|+.-
T Consensus       236 npd~~  240 (737)
T KOG1524|consen  236 NPEKD  240 (737)
T ss_pred             ccccc
Confidence            99943

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.23  E-value=7.4e-10  Score=99.06  Aligned_cols=206  Identities=15%  Similarity=0.232  Sum_probs=118.0

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEeccc------CCCceee-----cceeEEEEEcCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD------KTNQSYY-----GESKLNYLTTDG   71 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d------~t~~s~~-----g~~~l~~l~~~g   71 (321)
                      ..+.|.+|++.+   ..-.+...-..++.....|||||+.|+..+.-+..      .+.+-|+     .....|.+..+|
T Consensus        69 k~~~vqvwsl~Q---pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   69 KDPKVQVWSLVQ---PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDG  145 (447)
T ss_pred             ccceEEEEEeec---ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCC
Confidence            467899999988   55567777788899999999999998876321100      0000000     000112222222


Q ss_pred             Cceeeeec------------------C----CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeE
Q 020756           72 THEGLVPL------------------R----KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTV  129 (321)
Q Consensus        72 ~~~~~v~l------------------~----~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~  129 (321)
                      ..-...+.                  .    ......++.|||||..|+|-....+.++..|..         .-.+..+
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~---------~lG~k~v  216 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---------GLGLKFV  216 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee---------ccceeEE
Confidence            22111110                  0    012234455555555555543322333333321         2456788


Q ss_pred             EEcCCCCeEEEEccCCCCCcEEEEECCCCeE-------------------------------------------------
Q 020756          130 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-------------------------------------------------  160 (321)
Q Consensus       130 ~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~-------------------------------------------------  160 (321)
                      .|||.+++|++++   .|+.+++.+--+.+.                                                 
T Consensus       217 ~wsP~~qflavGs---yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se  293 (447)
T KOG4497|consen  217 EWSPCNQFLAVGS---YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE  293 (447)
T ss_pred             EeccccceEEeec---cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence            8999999999887   666665544322110                                                 


Q ss_pred             -----------EEeee------CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEE
Q 020756          161 -----------LGTTR------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEW  219 (321)
Q Consensus       161 -----------i~~~~------~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w  219 (321)
                                 +..++      .+  .+.-++||+|..|++|-.+.    .-|.+.|||+....++.  .....+..+.|
T Consensus       294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~----~PnalW~Wdlq~l~l~avLiQk~piraf~W  369 (447)
T KOG4497|consen  294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK----YPNALWLWDLQNLKLHAVLIQKHPIRAFEW  369 (447)
T ss_pred             hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC----CCceEEEEechhhhhhhhhhhccceeEEEe
Confidence                       00111      11  22337999999999998864    57889999997655532  23457889999


Q ss_pred             ecCCCCCC
Q 020756          220 KPVSPDKF  227 (321)
Q Consensus       220 ~P~~~~~~  227 (321)
                      .|..+.+.
T Consensus       370 dP~~prL~  377 (447)
T KOG4497|consen  370 DPGRPRLV  377 (447)
T ss_pred             CCCCceEE
Confidence            99888765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=2.8e-10  Score=98.03  Aligned_cols=178  Identities=18%  Similarity=0.253  Sum_probs=127.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEE-EEecccCCCceeecceeEEEEEcCC-CceeeeecC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV-AQSDVDKTNQSYYGESKLNYLTTDG-THEGLVPLR   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~-~~~d~d~t~~s~~g~~~l~~l~~~g-~~~~~v~l~   80 (321)
                      .++.|-||...+.. =+.....+.+++.+..+.|-|.+-.+++. ++.|         |...+..++.+| -....+..-
T Consensus        78 YDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSD---------G~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   78 YDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD---------GKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             cCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCC---------CcEEEEEEcCCCCccchhhhhc
Confidence            46789999998831 23455556677888899999987655543 3333         555566666653 334556667


Q ss_pred             CCCCeEEEEECcC---C-----------CEEEEEEccCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcCCC----Ce
Q 020756           81 KEGPVHDVQWSYS---G-----------SEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNPKG----KF  137 (321)
Q Consensus        81 ~~~~v~~~~wsP~---g-----------~~l~~~~g~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sPdG----~~  137 (321)
                      |+-.|+++.|.|-   |           +.|+.  |.+|..++||+....   .-.+|  |...+..++|.|.-    .+
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvS--gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~  225 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS--GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST  225 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeec--cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence            8999999999996   5           34555  788999999988653   22224  78899999999974    47


Q ss_pred             EEEEccCCCCCcEEEEECCCC------eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          138 LCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~------~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      |++++   .||+|.||-.+..      +.+..|. ..+..++||+.|..|+.+.      .||.+.||.-+
T Consensus       226 iAS~S---qDg~viIwt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~------GdNkvtlwke~  286 (299)
T KOG1332|consen  226 IASCS---QDGTVIIWTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSG------GDNKVTLWKEN  286 (299)
T ss_pred             eEEec---CCCcEEEEEecCccCcccccccccCC-cceEEEEEeccccEEEEec------CCcEEEEEEeC
Confidence            88888   9999999976521      1222221 1577899999999999998      49999999754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.6e-10  Score=105.73  Aligned_cols=174  Identities=14%  Similarity=0.189  Sum_probs=127.9

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  111 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~  111 (321)
                      -.+.-|+++++|++.        |..    ..|+++..... +-...+..++.|.++.|+.||+.|.++  +.++.|.+|
T Consensus       307 e~FeVShd~~fia~~--------G~~----G~I~lLhakT~-eli~s~KieG~v~~~~fsSdsk~l~~~--~~~GeV~v~  371 (514)
T KOG2055|consen  307 ERFEVSHDSNFIAIA--------GNN----GHIHLLHAKTK-ELITSFKIEGVVSDFTFSSDSKELLAS--GGTGEVYVW  371 (514)
T ss_pred             heeEecCCCCeEEEc--------ccC----ceEEeehhhhh-hhhheeeeccEEeeEEEecCCcEEEEE--cCCceEEEE
Confidence            355668999988774        222    23677766554 444455668999999999999999887  346799999


Q ss_pred             eCCCc-eeEEe-CCcC--eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC------eEEEeeeCC--CeeeEEEccCCC
Q 020756          112 NKKCR-PILEL-GSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAE--CSVTSEWSPDGR  179 (321)
Q Consensus       112 d~~~~-~~~~~-~~~~--~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~------~~i~~~~~~--~~~~~~wSpdG~  179 (321)
                      |++.. .++.| ..+.  -.+++-|++|++|++++   ..|-|.|||.++.      +.+..+..-  .|+.+.|+||++
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS---~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS---DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEecc---CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            99655 44555 3343  35688889999999998   8899999997643      445554443  678899999999


Q ss_pred             EEEEEEcCCceeecCcEEEEeecCceeEE------eccCceEEEEEecCCCCCC
Q 020756          180 YFMTATTAPRLQIDNGIKIFHHNGSLFFK------KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       180 ~l~t~~s~~rl~~d~~v~iw~~~g~~l~~------~~~~~~~~~~w~P~~~~~~  227 (321)
                      .|+.++..    .++.++|-|+-.--++.      .....+..+.|+|.+..+.
T Consensus       449 iLAiaS~~----~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lA  498 (514)
T KOG2055|consen  449 ILAIASRV----KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLA  498 (514)
T ss_pred             hhhhhhhc----cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEE
Confidence            99988853    68999999985444432      2345789999999876655

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.22  E-value=2.8e-10  Score=101.30  Aligned_cols=184  Identities=15%  Similarity=0.230  Sum_probs=129.4

Q ss_pred             eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 020756           23 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVY  101 (321)
Q Consensus        23 ~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~~  101 (321)
                      ...++...+....||+|++.+++...+          .+..||-+.-.+--+...++ +|...|+.+.|+|.+..|+.+ 
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~----------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc-   73 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNN----------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC-   73 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCC----------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc-
Confidence            444567788899999999999987432          23334544322211222222 478999999999999999997 


Q ss_pred             ccCCCeEEEEeC-CC---ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC------eEEEeeeCCCe
Q 020756          102 GFMPASATIFNK-KC---RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECS  169 (321)
Q Consensus       102 g~~~~~i~i~d~-~~---~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~------~~i~~~~~~~~  169 (321)
                       ..|...++|.. .+   ++...+  .+..+.++.|+|.++.+++++   ....|.||-++..      +.+...-...+
T Consensus        74 -s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS---gar~isVcy~E~ENdWWVsKhikkPirStv  149 (361)
T KOG1523|consen   74 -SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS---GARLISVCYYEQENDWWVSKHIKKPIRSTV  149 (361)
T ss_pred             -cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEecc---CccEEEEEEEecccceehhhhhCCccccce
Confidence             66888999987 33   344444  678889999999999999998   6667777766533      22333333478


Q ss_pred             eeEEEccCCCEEEEEEcCCceeecCcEEEEee-----c--------------CceeEEe--ccCceEEEEEecCCCCCC
Q 020756          170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-----N--------------GSLFFKK--MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-----~--------------g~~l~~~--~~~~~~~~~w~P~~~~~~  227 (321)
                      ++++|+|++-+|+++++      |...+++..     +              |+++.+.  ..+.+..+.|+|.+..+.
T Consensus       150 ~sldWhpnnVLlaaGs~------D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la  222 (361)
T KOG1523|consen  150 TSLDWHPNNVLLAAGST------DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA  222 (361)
T ss_pred             eeeeccCCcceeccccc------CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence            99999999999999996      999999874     1              2333222  334678888988876443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=2.7e-10  Score=101.22  Aligned_cols=134  Identities=17%  Similarity=0.289  Sum_probs=107.6

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEEC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~  155 (321)
                      |.++|.+++.+  |.+++.  |..|-+|.|||++.. ++..+  |.+.++++.|.|+-.  .|+++.   .||.|.+||.
T Consensus        42 H~~sitavAVs--~~~~aS--GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s---dDG~i~iw~~  114 (362)
T KOG0294|consen   42 HAGSITALAVS--GPYVAS--GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS---DDGHIIIWRV  114 (362)
T ss_pred             cccceeEEEec--ceeEec--cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec---CCCcEEEEEc
Confidence            78999999886  666655  788889999999543 44444  889999999999876  889988   8999999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC-ceEEEEEecCCCCCC
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKF  227 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~-~~~~~~w~P~~~~~~  227 (321)
                      ...+++.++..|  .++.++.+|.|++-++.+.      |..+++|++ +|+.-+..... .-..+.|.|.+..++
T Consensus       115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV  184 (362)
T ss_pred             CCeEEeeeecccccccceeEecCCCceEEEEcC------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence            999999999987  7999999999998888774      999999998 66654443332 223389998887433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.22  E-value=3.7e-10  Score=105.88  Aligned_cols=185  Identities=18%  Similarity=0.353  Sum_probs=138.3

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCC
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMP  105 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~-g~~~  105 (321)
                      -+..+.++.|+|+++.+.++..          |-...+-..++.+.   .+....++.-+.+-|||.+++++++. +..-
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g----------~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~  339 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISG----------YMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNLQ  339 (561)
T ss_pred             ccccceeeeecccCCceeEEec----------ccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCccc
Confidence            3567889999999999988731          11112223333443   22222456667889999999998862 4445


Q ss_pred             CeEEEEeCCCc--eeEEeCCcCeeeEEEcCCCCeEEEEccC---CCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCE
Q 020756          106 ASATIFNKKCR--PILELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~~--~~~~~~~~~~~~~~~sPdG~~l~~~g~~---n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~  180 (321)
                      +.+.+||..++  .+..+......-+.|||||+|+.+...+   +.|..|.|||+. +..+-     ..+.+.|.|.|++
T Consensus       340 gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~-g~~~f-----el~~~~W~p~~~~  413 (561)
T COG5354         340 GNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY-GAKVF-----ELTNITWDPSGQY  413 (561)
T ss_pred             cceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec-Cchhh-----hhhhccccCCccc
Confidence            68999998665  3345655566678999999999886543   358899999983 32222     6678999999999


Q ss_pred             EEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCCCc
Q 020756          181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      ..+.++.|+....++.++.++.|.++-.+..+....|+|+|.++.+++..
T Consensus       414 ~ttsSs~~~h~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~~  463 (561)
T COG5354         414 VTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTIE  463 (561)
T ss_pred             ceeeccCCCCccccccccccccccccChhhhcccceeEEecCCCccCChh
Confidence            99999999888899999999999999887888999999999999999863

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.21  E-value=3e-10  Score=104.01  Aligned_cols=125  Identities=14%  Similarity=0.340  Sum_probs=99.6

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-e------CCcCeeeEEEcCCCC
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L------GSGPYNTVRWNPKGK  136 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~------~~~~~~~~~~sPdG~  136 (321)
                      |-.++..+. .....++-.+.|.++..+++|.++.++  ..|..+.++|+++..+.. +      .....+.+.|||+|+
T Consensus       324 vRfwD~Rs~-~~~~sv~~gg~vtSl~ls~~g~~lLss--sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~  400 (459)
T KOG0288|consen  324 VRFWDIRSA-DKTRSVPLGGRVTSLDLSMDGLELLSS--SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS  400 (459)
T ss_pred             eEEEeccCC-ceeeEeecCcceeeEeeccCCeEEeee--cCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence            555664443 344444566899999999999999987  557799999998875543 3      234478899999999


Q ss_pred             eEEEEccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          137 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       137 ~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      |++.++   .+|.|+||++.++++...+...    .+++++|+|.|.+|+++.      .+..+.||.
T Consensus       401 YvaAGS---~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad------k~~~v~lW~  459 (459)
T KOG0288|consen  401 YVAAGS---ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD------KQKAVTLWT  459 (459)
T ss_pred             eeeecc---CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc------CCcceEecC
Confidence            999999   9999999999999877665542    589999999999999999      378888883

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2e-10  Score=109.43  Aligned_cols=205  Identities=20%  Similarity=0.256  Sum_probs=143.4

Q ss_pred             CceEEEEEcCCcCCCC-ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-C
Q 020756            4 PASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~-~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~   81 (321)
                      ++.|..|.-+.....+ -++..--..-...++.|+.+|+||++++.+   ..+++      +++-++... ..+.++. .
T Consensus       496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~---~~~~~------VliHQLSK~-~sQ~PF~ks  565 (733)
T KOG0650|consen  496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD---SGNKS------VLIHQLSKR-KSQSPFRKS  565 (733)
T ss_pred             cccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC---CCcce------EEEEecccc-cccCchhhc
Confidence            4567788877421111 122222223467799999999999997532   12222      333233332 3445553 5


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .+.|.++.|+|...+|+|+.   -..+.|||+ ++..+..+  +...+..++.+|.|..|++++   .++.|..+|++-.
T Consensus       566 kG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs---~d~k~~WfDldls  639 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS---YDKKMCWFDLDLS  639 (733)
T ss_pred             CCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec---CCCeeEEEEcccC
Confidence            78999999999999999964   347999998 55555555  566789999999999999998   8899999999744


Q ss_pred             -eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-------cCcee-----EEeccC----ceEEEEE
Q 020756          159 -KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-------NGSLF-----FKKMFD----KLFQAEW  219 (321)
Q Consensus       159 -~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-------~g~~l-----~~~~~~----~~~~~~w  219 (321)
                       +...++..|  .+..++|++.--+|++++.      |+.+.|++-       ...++     ..+|..    .|.++.|
T Consensus       640 skPyk~lr~H~~avr~Va~H~ryPLfas~sd------Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w  713 (733)
T KOG0650|consen  640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSD------DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW  713 (733)
T ss_pred             cchhHHhhhhhhhhhhhhhccccceeeeecC------CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc
Confidence             555666666  6788999999999999984      799999873       11122     223333    4888999


Q ss_pred             ecCCCCCCCCc
Q 020756          220 KPVSPDKFGDI  230 (321)
Q Consensus       220 ~P~~~~~~~~~  230 (321)
                      +|..+++|++.
T Consensus       714 HP~qpWLfsAG  724 (733)
T KOG0650|consen  714 HPRQPWLFSAG  724 (733)
T ss_pred             cCCCceEEecC
Confidence            99999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.6e-10  Score=108.62  Aligned_cols=214  Identities=12%  Similarity=0.139  Sum_probs=148.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEeccc------CCC---ceeeccee---------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD------KTN---QSYYGESK---------   63 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d------~t~---~s~~g~~~---------   63 (321)
                      +..|.||||.|.+   +.++.+..| ...+..+.|+|.++.-++.+..+..      .-|   ..+.+...         
T Consensus       419 sdDGtvriWEi~T---gRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~  494 (733)
T KOG0650|consen  419 SDDGTVRIWEIAT---GRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESE  494 (733)
T ss_pred             CCCCcEEEEEeec---ceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccC
Confidence            4678999999999   889988775 5578899999998866555444321      001   00000000         


Q ss_pred             ----EEEEEcC----CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeCCCc-eeEEe--CCcCeeeEEE
Q 020756           64 ----LNYLTTD----GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCR-PILEL--GSGPYNTVRW  131 (321)
Q Consensus        64 ----l~~l~~~----g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~-~~i~i~d~~~~-~~~~~--~~~~~~~~~~  131 (321)
                          +..|...    +.....+.+.|..+|.++.|+..|++|+++.+... ..+.|+++... ...-|  ..+.+.++.|
T Consensus       495 p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~F  574 (733)
T KOG0650|consen  495 PDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKF  574 (733)
T ss_pred             CcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEe
Confidence                0111111    11112355668889999999999999999865433 47888888432 22233  5788999999


Q ss_pred             cCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--ee-
Q 020756          132 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF-  206 (321)
Q Consensus       132 sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l-  206 (321)
                      +|.-.+|+++.    ...|.|||+..++.+..+...  .+..++.+|.|..|+.++      .|+.+..+|++-.  .. 
T Consensus       575 HPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs------~d~k~~WfDldlsskPyk  644 (733)
T KOG0650|consen  575 HPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS------YDKKMCWFDLDLSSKPYK  644 (733)
T ss_pred             cCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec------CCCeeEEEEcccCcchhH
Confidence            99999999985    468999999887666655443  788899999999999999      5999999998533  22 


Q ss_pred             -EEeccCceEEEEEecCCCCCCCC
Q 020756          207 -FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 -~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                       ...|...+.+|++++.-+.+.+.
T Consensus       645 ~lr~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  645 TLRLHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             Hhhhhhhhhhhhhhccccceeeee
Confidence             44567788888888877655544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.18  E-value=2.1e-09  Score=100.20  Aligned_cols=155  Identities=15%  Similarity=0.224  Sum_probs=120.2

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEE
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~  140 (321)
                      .+++...++  ..+++.+.+.|.-..+.-+++-+++  |..++ .+-|||.++..+..+  +-+.+..+..+|+|+++++
T Consensus       343 aFi~~~~~~--~~iqv~~~~~VrY~r~~~~~e~~vi--gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vv  418 (668)
T COG4946         343 AFIMRPWDG--YSIQVGKKGGVRYRRIQVDPEGDVI--GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVV  418 (668)
T ss_pred             EEEECCCCC--eeEEcCCCCceEEEEEccCCcceEE--eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEE
Confidence            466666665  4567788899999999988886665  56677 899999999887777  5688999999999999999


Q ss_pred             EccCCCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccC--ceEE
Q 020756          141 AGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--KLFQ  216 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~--~~~~  216 (321)
                      +.   ...+|.++|++++.  .+-..+..-++.+.|||++++||.+-  |.--+...|+|+|..|..++.....  .-++
T Consensus       419 aN---dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf--P~gy~tq~Iklydm~~~Kiy~vTT~ta~Dfs  493 (668)
T COG4946         419 AN---DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF--PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFS  493 (668)
T ss_pred             Ec---CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec--CcceeeeeEEEEecCCCeEEEecCCcccccC
Confidence            96   78899999999984  34444444799999999999999876  3333678899999998777554443  3344


Q ss_pred             EEEecCCCCCC
Q 020756          217 AEWKPVSPDKF  227 (321)
Q Consensus       217 ~~w~P~~~~~~  227 (321)
                      -+|.|+..++|
T Consensus       494 PaFD~d~ryLY  504 (668)
T COG4946         494 PAFDPDGRYLY  504 (668)
T ss_pred             cccCCCCcEEE
Confidence            56777776655

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.17  E-value=1.8e-09  Score=95.10  Aligned_cols=201  Identities=16%  Similarity=0.257  Sum_probs=135.1

Q ss_pred             ceEEEEEcCCcCC-CCce-----eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeee
Q 020756            5 ASVQIYACGKDLQ-SQPL-----ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLV   77 (321)
Q Consensus         5 ~~v~v~~~~~~~~-~~~i-----~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v   77 (321)
                      -.+|||.+..... -.+.     ...+-|.+....|.||.-...++..++.|  .       +=.+|.+... ...-+..
T Consensus       121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD--T-------TCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID--T-------TCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc--C-------eEEEEEEeeccccceeeE
Confidence            3689999984210 1111     12334567788999998888887765543  1       1124555442 1112333


Q ss_pred             ecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCceeEEe------CCcCeeeEEEcCCC-CeEEEEccCCCCCc
Q 020756           78 PLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKG-KFLCLAGFGNLPGD  149 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~~~~~------~~~~~~~~~~sPdG-~~l~~~g~~n~~g~  149 (321)
                      -+.|...|+|++|...|. .||.+  ..||.+++||++...-.++      ...+.-.++|+++. +++++-..  ....
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASv--gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~--dS~~  267 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASV--GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--DSNK  267 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEe--cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc--CCce
Confidence            356899999999999776 45555  4589999999976533333      14567789999854 56766541  2368


Q ss_pred             EEEEECCC-CeEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecCc---------eeEEeccCceEE
Q 020756          150 MAFWDYVD-GKQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGS---------LFFKKMFDKLFQ  216 (321)
Q Consensus       150 i~iwD~~~-~~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~---------~l~~~~~~~~~~  216 (321)
                      |.|.|++. ...+..+..|  .+..++|.|. ..+|.+++.      |....|||+..-         +.|. ...+|.+
T Consensus       268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------D~qaliWDl~q~~~~~~~dPilay~-a~~EVNq  340 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------DCQALIWDLQQMPRENGEDPILAYT-AGGEVNQ  340 (364)
T ss_pred             EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------cceEEEEecccccccCCCCchhhhh-ccceeee
Confidence            99999874 4677778777  7888999996 778888884      889999999421         1133 4569999


Q ss_pred             EEEecCCCC
Q 020756          217 AEWKPVSPD  225 (321)
Q Consensus       217 ~~w~P~~~~  225 (321)
                      ++|+|..+.
T Consensus       341 i~Ws~~~~D  349 (364)
T KOG0290|consen  341 IQWSSSQPD  349 (364)
T ss_pred             eeecccCCC
Confidence            999986553

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.16  E-value=1.9e-09  Score=103.21  Aligned_cols=198  Identities=14%  Similarity=0.247  Sum_probs=129.6

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      .++.++++..   ++.-...+ |........|+|||++|++....+         |...||+++..+....++. .-.+.
T Consensus       218 ~~i~~~~l~~---g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd---------g~~~iy~~dl~~~~~~~Lt-~~~gi  283 (425)
T COG0823         218 PRIYYLDLNT---GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD---------GSPDIYLMDLDGKNLPRLT-NGFGI  283 (425)
T ss_pred             ceEEEEeccC---Cccceeec-cCCccCCccCCCCCCEEEEEECCC---------CCccEEEEcCCCCcceecc-cCCcc
Confidence            5677788877   33333333 566777889999999999975432         6667999999887644432 23444


Q ss_pred             eEEEEECcCCCEEEEEEccCCC-eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCC--cEEEEECCCCe
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDGK  159 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g--~i~iwD~~~~~  159 (321)
                      -..-.|+|||+.++++...... .|.++|..+.....+  .........|||||++|++.+..  +|  .|.+.|+.++.
T Consensus       284 ~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~--~g~~~i~~~~~~~~~  361 (425)
T COG0823         284 NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS--GGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc--CCceeeEEeccCCCC
Confidence            4578999999999998533222 677778877755444  44444489999999999998721  34  47778887765


Q ss_pred             EEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEec
Q 020756          160 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKP  221 (321)
Q Consensus       160 ~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P  221 (321)
                      .+..+... .....+|+|+|+.|+..+...   .+..+..-+.+|+.....  ....+....|.|
T Consensus       362 ~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~---~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~  423 (425)
T COG0823         362 KIRILTSTYLNESPSWAPNGRMIMFSSGQG---GGSVLSLVSLDGRVSRPLPLADGDVRVPAWSP  423 (425)
T ss_pred             cEEEccccccCCCCCcCCCCceEEEeccCC---CCceEEEeeccceeEEEEeccCcceecccccC
Confidence            44444443 334579999999999988643   122333333455544322  223555666655

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.16  E-value=1.2e-09  Score=96.07  Aligned_cols=209  Identities=12%  Similarity=0.221  Sum_probs=138.9

Q ss_pred             ceEEEEEcCCcCCCCceeeeeccc--CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce------ee
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GL   76 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~--~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~------~~   76 (321)
                      ..|-+-.+...  +..+-.+.||.  .++..+.=+|-.+.|+..+-.+....+..+  ...||.|.-.-+..      ..
T Consensus        40 NqVhll~~d~e--~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~--~aaiw~ipe~~~~S~~~tlE~v  115 (370)
T KOG1007|consen   40 NQVHLLRLDSE--GSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLT--GAAIWQIPEPLGQSNSSTLECV  115 (370)
T ss_pred             ceeEEEEecCc--cchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCccee--eEEEEecccccCccccchhhHh
Confidence            34555555542  45566666663  455677778888888887654433333322  22355554332221      11


Q ss_pred             eecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-e-eEEe-------CCcCeeeEEEcC--CCCeEEEEcc
Q 020756           77 VPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-P-ILEL-------GSGPYNTVRWNP--KGKFLCLAGF  143 (321)
Q Consensus        77 v~l~--~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~-~~~~-------~~~~~~~~~~sP--dG~~l~~~g~  143 (321)
                      ..|+  +-+.|.++.|.|++..++...   +..|.+|++... . +..+       +.....+-.|||  ||+.+++.+ 
T Consensus       116 ~~Ldteavg~i~cvew~Pns~klasm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-  191 (370)
T KOG1007|consen  116 ASLDTEAVGKINCVEWEPNSDKLASMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-  191 (370)
T ss_pred             hcCCHHHhCceeeEEEcCCCCeeEEec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-
Confidence            1223  457899999999999998853   568999998432 1 2222       244566779999  688888874 


Q ss_pred             CCCCCcEEEEECCCCeEEEeeeC-C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC--cee--EEeccCceEE
Q 020756          144 GNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--SLF--FKKMFDKLFQ  216 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~~i~~~~~-~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~l--~~~~~~~~~~  216 (321)
                         ++++.+||+++.++...++. |  .+..+.|.|+-++++....     .|+.++|||...  ..+  ...|...+|.
T Consensus       192 ---d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g-----DdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  192 ---DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG-----DDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             ---CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC-----CCccEEEEeccCCCccccccCCCceEEEE
Confidence               68999999999877766654 3  6888999999776655443     388999999843  333  4456678999


Q ss_pred             EEEecCCCCCCCC
Q 020756          217 AEWKPVSPDKFGD  229 (321)
Q Consensus       217 ~~w~P~~~~~~~~  229 (321)
                      +.++|....++-.
T Consensus       264 VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  264 VRFNPEHDQLILS  276 (370)
T ss_pred             EEecCccceEEEe
Confidence            9999987766643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=1.4e-09  Score=92.83  Aligned_cols=139  Identities=14%  Similarity=0.236  Sum_probs=98.6

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC--CCc------eeEEeCCcCeeeEEEc-------------------
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCR------PILELGSGPYNTVRWN-------------------  132 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~--~~~------~~~~~~~~~~~~~~~s-------------------  132 (321)
                      .|.+.|++.+|||+|+.|++  |..|..|++.-.  ++.      .-+..|.+.+..++|-                   
T Consensus        87 hhkgsiyc~~ws~~geliat--gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIAT--GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccCccEEEEEecCccCeEEe--cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            47999999999999999988  677877766422  111      1122244444444333                   


Q ss_pred             ---------------------------CCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC---------CCeeeEEEcc
Q 020756          133 ---------------------------PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------ECSVTSEWSP  176 (321)
Q Consensus       133 ---------------------------PdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~---------~~~~~~~wSp  176 (321)
                                                 -+|-.+++++   .|.+|+|||++-..++.++..         ..+..++..|
T Consensus       165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgs---qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGS---QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccC---CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence                                       2234444444   788999999987777766442         2567799999


Q ss_pred             CCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCCCC
Q 020756          177 DGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       177 dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .|++|+++-      .|....+||+.|..+   +..|..++..+.|+|..-++++-
T Consensus       242 sgrll~sg~------~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~  291 (350)
T KOG0641|consen  242 SGRLLASGH------ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC  291 (350)
T ss_pred             Ccceeeecc------CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence            999999998      599999999988765   44466799999999987776643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.15  E-value=3.5e-10  Score=108.39  Aligned_cols=199  Identities=16%  Similarity=0.219  Sum_probs=131.1

Q ss_pred             CCceEEEEEcCCcCCCC-ceeeeec---ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--ee
Q 020756            3 SPASVQIYACGKDLQSQ-PLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GL   76 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~-~i~~~~~---f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~   76 (321)
                      .+|.|.||+..... .+ +-++..+   +..-+.++.|-| |+..++.++           |.+.+..|++.+..-  ..
T Consensus        72 E~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsas-----------GDsT~r~Wdvk~s~l~G~~  138 (720)
T KOG0321|consen   72 EDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSAS-----------GDSTIRPWDVKTSRLVGGR  138 (720)
T ss_pred             CCCceeeecchhhh-cchhhhhhcccccccceeEeeccCC-CceeEEEcc-----------CCceeeeeeeccceeecce
Confidence            57899999988732 12 2222232   345678999999 888888643           566667777655432  33


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE----------eC--------------------CcCe
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE----------LG--------------------SGPY  126 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~----------~~--------------------~~~~  126 (321)
                      +.+.|.+.|.+++|.|+...+++ .|..|+.+.|||++++.+..          -|                    ...+
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~-tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti  217 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFC-TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI  217 (720)
T ss_pred             eecccccccchhhhccCCCccee-eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence            57789999999999998764433 38899999999986543110          01                    1122


Q ss_pred             e---eEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee--------eCC-----Ceee-------------------
Q 020756          127 N---TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT--------RAE-----CSVT-------------------  171 (321)
Q Consensus       127 ~---~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~--------~~~-----~~~~-------------------  171 (321)
                      .   ++.+.-|...|+++|-  .|+.|+|||++........        ..+     .+++                   
T Consensus       218 ~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI  295 (720)
T KOG0321|consen  218 FSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI  295 (720)
T ss_pred             eeeeEEEEEeccceeeeccC--CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence            2   3677889999999982  4899999999864211100        000     1111                   


Q ss_pred             ---------------------------EEEccCCCEEEEEEcCCceeecCcEEEEeecCc----eeEEeccCceEEEEEe
Q 020756          172 ---------------------------SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWK  220 (321)
Q Consensus       172 ---------------------------~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~----~l~~~~~~~~~~~~w~  220 (321)
                                                 -.-||||.+|+++++      |...+||.++.-    .++.+|..+|..+.|.
T Consensus       296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs------d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~  369 (720)
T KOG0321|consen  296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS------DEQAYIWVVSSPEAPPALLLGHTREVTTVRWL  369 (720)
T ss_pred             EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC------CcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence                                       145777777777775      777777777432    2366778899999999


Q ss_pred             cCC
Q 020756          221 PVS  223 (321)
Q Consensus       221 P~~  223 (321)
                      |.+
T Consensus       370 pS~  372 (720)
T KOG0321|consen  370 PSA  372 (720)
T ss_pred             ccc
Confidence            855

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.14  E-value=1.2e-09  Score=97.55  Aligned_cols=178  Identities=16%  Similarity=0.240  Sum_probs=120.6

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecCC-----CCCeEEEEECcCCC-EEEEEEcc
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRK-----EGPVHDVQWSYSGS-EFAVVYGF  103 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~~-----~~~v~~~~wsP~g~-~l~~~~g~  103 (321)
                      ...+.|||||..|+.--.           ....++.+..-|..... -++.+     .+-|.++++||... .+++  |.
T Consensus       161 AhsL~Fs~DGeqlfaGyk-----------rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~--gs  227 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAGYK-----------RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GS  227 (406)
T ss_pred             heeEEecCCCCeEeeccc-----------ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceee--ec
Confidence            347899999999987411           22234444333332211 22223     67889999999655 5555  33


Q ss_pred             CCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC-C-e---eeEEE
Q 020756          104 MPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-C-S---VTSEW  174 (321)
Q Consensus       104 ~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~-~-~---~~~~w  174 (321)
                      -...+-||.- ...+++.+  |.+.|..+.|.+||+.|.++.-  .+-.|..||++.- ..+..+..| . .   ..+..
T Consensus       228 Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR--k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl  305 (406)
T KOG2919|consen  228 YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR--KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL  305 (406)
T ss_pred             ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc--CCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence            2346667654 34566666  6889999999999999988872  4678999999854 556666555 1 2   23677


Q ss_pred             ccCCCEEEEEEcCCceeecCcEEEEeecC--ce--eEEeccCceEEEEEecCCCCCCCC
Q 020756          175 SPDGRYFMTATTAPRLQIDNGIKIFHHNG--SL--FFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~--l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .|+|++|+++.+      |+.|++||+.+  ..  ++..+.+-+..|+.+|.-|.+.+.
T Consensus       306 d~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  306 DPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             CCCCceeeccCC------CccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence            899999999985      99999999964  32  244455677889999986665554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.13  E-value=6e-09  Score=95.17  Aligned_cols=184  Identities=14%  Similarity=0.222  Sum_probs=135.4

Q ss_pred             CCCceEEEEEcCCcC----CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            2 GSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~----~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      +.+..|.||+||...    ...++..+..+...+-.+.|+|.-..+|+.+.           +...+.++++.. .+..+
T Consensus       101 SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag-----------~Dn~v~iWnv~t-geali  168 (472)
T KOG0303|consen  101 SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG-----------SDNTVSIWNVGT-GEALI  168 (472)
T ss_pred             CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc-----------CCceEEEEeccC-Cceee
Confidence            356889999999722    23566777777777778999999888887642           222344555544 47889


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCe-eeEEEcCCCCeEEEEccCC-CCCcEEE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPY-NTVRWNPKGKFLCLAGFGN-LPGDMAF  152 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~-~~~~~sPdG~~l~~~g~~n-~~g~i~i  152 (321)
                      .++|.+.|+++.|+-||.+|++.  +.|.+|+|||.+.. .+..-  |.+.. ..+.|--+|. |+++||.- .+.++-+
T Consensus       169 ~l~hpd~i~S~sfn~dGs~l~Tt--ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aL  245 (472)
T KOG0303|consen  169 TLDHPDMVYSMSFNRDGSLLCTT--CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIAL  245 (472)
T ss_pred             ecCCCCeEEEEEeccCCceeeee--cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceec
Confidence            99999999999999999999995  77999999998654 44444  44433 3466888888 88888754 3679999


Q ss_pred             EECCCCe-E--EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          153 WDYVDGK-Q--LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       153 wD~~~~~-~--i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      ||.++.+ .  +..+... .+.-.-|.+|...|..++-     .|+.|+.|.++.+.
T Consensus       246 wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK-----GD~~IRYyEit~d~  297 (472)
T KOG0303|consen  246 WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK-----GDSSIRYFEITNEP  297 (472)
T ss_pred             cCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec-----CCcceEEEEecCCC
Confidence            9987763 2  2333333 6666789999998888875     69999999996654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.13  E-value=1.6e-08  Score=90.16  Aligned_cols=175  Identities=17%  Similarity=0.224  Sum_probs=120.3

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      .|..|.||+=-.   ..++...+| ..++..+...++  .|+++.             +..+|.+...........++..
T Consensus        73 ~pNkviIWDD~k---~~~i~el~f-~~~I~~V~l~r~--riVvvl-------------~~~I~VytF~~n~k~l~~~et~  133 (346)
T KOG2111|consen   73 PPNKVIIWDDLK---ERCIIELSF-NSEIKAVKLRRD--RIVVVL-------------ENKIYVYTFPDNPKLLHVIETR  133 (346)
T ss_pred             CCceEEEEeccc---CcEEEEEEe-ccceeeEEEcCC--eEEEEe-------------cCeEEEEEcCCChhheeeeecc
Confidence            377899999433   677777775 457778887774  444432             2223443333222222222221


Q ss_pred             -CCeEEEEECcCC-CEEEEEEccCCCeEEEEeCCCcee---E--EeCCcCeeeEEEcCCCCeEEEEccCCCCCc-EEEEE
Q 020756           83 -GPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKCRPI---L--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGD-MAFWD  154 (321)
Q Consensus        83 -~~v~~~~wsP~g-~~l~~~~g~~~~~i~i~d~~~~~~---~--~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~-i~iwD  154 (321)
                       .|---++..|.. ..++++-|...|.+.|-|+.....   .  .-|...+.+++.+-+|..||+++   ..|+ |+|||
T Consensus       134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS---tkGTLIRIFd  210 (346)
T KOG2111|consen  134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS---TKGTLIRIFD  210 (346)
T ss_pred             cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec---cCcEEEEEEE
Confidence             122245555643 344444477788999999843322   2  33999999999999999999998   6564 78999


Q ss_pred             CCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          155 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       155 ~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      ..+|+++..+...    .+.+++||||+.+|++++.      .++++|+.+....
T Consensus       211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd------KgTlHiF~l~~~~  259 (346)
T KOG2111|consen  211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD------KGTLHIFSLRDTE  259 (346)
T ss_pred             cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC------CCeEEEEEeecCC
Confidence            9999999988764    7889999999999999994      7889999985543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=3e-09  Score=94.29  Aligned_cols=149  Identities=12%  Similarity=0.195  Sum_probs=116.7

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      +..+..+.|+|.++.||+.          +|.|+-.||.+..+   +-.+.+.|+.|+.+++|.++.+ +++  |+.|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvs----------sWDgslrlYdv~~~---~l~~~~~~~~plL~c~F~d~~~-~~~--G~~dg~   76 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVS----------SWDGSLRLYDVPAN---SLKLKFKHGAPLLDCAFADEST-IVT--GGLDGQ   76 (323)
T ss_pred             hhceeeEEEcCcCCcEEEE----------eccCcEEEEeccch---hhhhheecCCceeeeeccCCce-EEE--eccCce
Confidence            3456788999999999885          35577677766554   4556667999999999998553 333  688999


Q ss_pred             EEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756          108 ATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       108 i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~  185 (321)
                      |+++|+.+.....+  |..++.++.+++--..++++|   .|+.|++||.++...+..+.... -..+-+-.|..|+.++
T Consensus        77 vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs---WD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~  152 (323)
T KOG1036|consen   77 VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS---WDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGT  152 (323)
T ss_pred             EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc---cCccEEEEeccccccccccccCc-eEEEEeccCCEEEEee
Confidence            99999987766666  788999999999999999999   99999999998766666665543 2234555688888888


Q ss_pred             cCCceeecCcEEEEeec
Q 020756          186 TAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       186 s~~rl~~d~~v~iw~~~  202 (321)
                      .      |..+.+||+.
T Consensus       153 ~------~r~v~iyDLR  163 (323)
T KOG1036|consen  153 S------DRKVLIYDLR  163 (323)
T ss_pred             c------CceEEEEEcc
Confidence            4      9999999984

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=1.5e-09  Score=98.20  Aligned_cols=135  Identities=27%  Similarity=0.491  Sum_probs=97.8

Q ss_pred             CCCeEEEEECcCC-CEEEEEEccCCCeEEEEeCCC-----ce----------eEEe-CCcCeeeEEEcCCCCeEEEEccC
Q 020756           82 EGPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKC-----RP----------ILEL-GSGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        82 ~~~v~~~~wsP~g-~~l~~~~g~~~~~i~i~d~~~-----~~----------~~~~-~~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      ...|.+++|-|.+ +.|++  |+. +-|.||....     ..          +... ++.+|.++.|++||..+++++++
T Consensus       140 QrnvtclawRPlsaselav--gCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAV--GCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hcceeEEEeccCCcceeee--eec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC
Confidence            4578999999965 46776  343 4689996521     11          1111 56789999999999999999976


Q ss_pred             CCCCcEEEEECCCCeEEEee-eC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEE
Q 020756          145 NLPGDMAFWDYVDGKQLGTT-RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEW  219 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i~~~-~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w  219 (321)
                      +  ..|.|||.+++.++-.. .+ ..++-+.|||||.+|..++      .|..+++|..+..--   .......|....|
T Consensus       217 s--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt------~davfrlw~e~q~wt~erw~lgsgrvqtacW  288 (445)
T KOG2139|consen  217 S--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT------CDAVFRLWQENQSWTKERWILGSGRVQTACW  288 (445)
T ss_pred             c--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec------ccceeeeehhcccceecceeccCCceeeeee
Confidence            5  88999999998765544 22 3778899999999999999      499999996532111   1122337778888


Q ss_pred             ecCCCCCC
Q 020756          220 KPVSPDKF  227 (321)
Q Consensus       220 ~P~~~~~~  227 (321)
                      +|.+..++
T Consensus       289 spcGsfLL  296 (445)
T KOG2139|consen  289 SPCGSFLL  296 (445)
T ss_pred             cCCCCEEE
Confidence            88887655

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.11  E-value=3.9e-10  Score=101.38  Aligned_cols=182  Identities=11%  Similarity=0.156  Sum_probs=127.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      +..|+||+...   -.++....-+.+.+.-+.+..  + +++..+           ...++-.++.+.+..-.+-+.|.+
T Consensus       216 DnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--r-viisGS-----------SDsTvrvWDv~tge~l~tlihHce  278 (499)
T KOG0281|consen  216 DNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--R-VIVSGS-----------SDSTVRVWDVNTGEPLNTLIHHCE  278 (499)
T ss_pred             cCceEEecccc---HHHHHhhhcCCCcEEeeeccc--e-EEEecC-----------CCceEEEEeccCCchhhHHhhhcc
Confidence            45788888877   455555555555555554433  2 444322           122355666666544445567899


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      .|..+.|+.  .+++++  ..|..+.+||+..-      .+..-|...+|.+.|+  .++|++++   .|.+|++|+..+
T Consensus       279 aVLhlrf~n--g~mvtc--SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS---gDRTikvW~~st  349 (499)
T KOG0281|consen  279 AVLHLRFSN--GYMVTC--SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS---GDRTIKVWSTST  349 (499)
T ss_pred             eeEEEEEeC--CEEEEe--cCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec---CCceEEEEeccc
Confidence            999999984  356665  66889999998532      1222278899999997  56999998   899999999999


Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEE
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEW  219 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w  219 (321)
                      ++++.++.+|  .+.++.  -.|++++++++      |++|+|||+. |.++  .++|.+-+..+.|
T Consensus       350 ~efvRtl~gHkRGIAClQ--Yr~rlvVSGSS------DntIRlwdi~~G~cLRvLeGHEeLvRciRF  408 (499)
T KOG0281|consen  350 CEFVRTLNGHKRGIACLQ--YRDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCIRF  408 (499)
T ss_pred             eeeehhhhcccccceehh--ccCeEEEecCC------CceEEEEeccccHHHHHHhchHHhhhheee
Confidence            9999999988  555544  47999999997      9999999994 5444  5555554444444

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.11  E-value=2e-09  Score=95.23  Aligned_cols=117  Identities=18%  Similarity=0.352  Sum_probs=89.9

Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEE---eCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILE---LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~---~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      ++-..++.|.+++|||....|+.+ |.-|++|++|++...  .+-.   -+.+++-++.|+-||..+++++   .|+.++
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A-~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~---~Dk~~k   97 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAA-GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG---CDKQAK   97 (347)
T ss_pred             cCCCcccchheeEeccccCceEEe-cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec---cCCceE
Confidence            333468899999999965555544 788999999998542  2211   1789999999999999999999   999999


Q ss_pred             EEECCCCeEEEeeeCC-CeeeEEEccCCC--EEEEEEcCCceeecCcEEEEeecC
Q 020756          152 FWDYVDGKQLGTTRAE-CSVTSEWSPDGR--YFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~-~~~~~~wSpdG~--~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +||+.+++....-.+. .+-.+.|=+...  .|+|++      -|.+++.||...
T Consensus        98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS------WDKTlKfWD~R~  146 (347)
T KOG0647|consen   98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS------WDKTLKFWDTRS  146 (347)
T ss_pred             EEEccCCCeeeeeecccceeEEEEecCCCcceeEecc------cccceeecccCC
Confidence            9999999544433332 677888877655  677777      499999999853

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.10  E-value=4.2e-09  Score=103.53  Aligned_cols=186  Identities=13%  Similarity=0.170  Sum_probs=128.0

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      +-.++||++.+   ++++...........-+.   .+..+++..+           ...++..+++....-..+...|.+
T Consensus       270 D~t~rvWd~~s---g~C~~~l~gh~stv~~~~---~~~~~~~sgs-----------~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  270 DKTERVWDCST---GECTHSLQGHTSSVRCLT---IDPFLLVSGS-----------RDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             CCcEEeEecCC---CcEEEEecCCCceEEEEE---ccCceEeecc-----------CCceEEEEeccCcceEEEeccccc
Confidence            55788999777   677766554332222111   1122222211           223355556554433333333999


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-e
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-K  159 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~  159 (321)
                      +|+++..+  +.+++.  |..|+.|.+||.. ++.+.++  |...|.++.+.+. ..++.++   .|+.|++||+++. +
T Consensus       333 ~V~~v~~~--~~~lvs--gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs---~D~~IkvWdl~~~~~  404 (537)
T KOG0274|consen  333 PVNCVQLD--EPLLVS--GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS---LDTTIKVWDLRTKRK  404 (537)
T ss_pred             cEEEEEec--CCEEEE--EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee---eccceEeecCCchhh
Confidence            99999999  556655  5678899999984 5566666  8889999988766 8888888   9999999999999 9


Q ss_pred             EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE--e-ccCceEEEEEe
Q 020756          160 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK--K-MFDKLFQAEWK  220 (321)
Q Consensus       160 ~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~--~-~~~~~~~~~w~  220 (321)
                      ++.++.+|....-.....+++|++++      .|+.|++||. +++++..  . +...+..+.+.
T Consensus       405 c~~tl~~h~~~v~~l~~~~~~Lvs~~------aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  405 CIHTLQGHTSLVSSLLLRDNFLVSSS------ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             hhhhhcCCcccccccccccceeEecc------ccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            99999998555456677899999999      5999999998 4555533  3 34566666665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.10  E-value=4e-10  Score=106.20  Aligned_cols=90  Identities=20%  Similarity=0.417  Sum_probs=76.6

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ++.|+.++|||||++||++  ..|+.++|||.....+..+   --+..-|+.|||||++|+++|   .|--|.||.+..+
T Consensus       290 ~g~in~f~FS~DG~~LA~V--SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG---EDDLVtVwSf~er  364 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATV--SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG---EDDLVTVWSFEER  364 (636)
T ss_pred             cccccceeEcCCCceEEEE--ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC---CcceEEEEEeccc
Confidence            6799999999999999998  6689999999977655444   246788999999999999999   8889999999999


Q ss_pred             eEEEeeeCC--CeeeEEEcc
Q 020756          159 KQLGTTRAE--CSVTSEWSP  176 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSp  176 (321)
                      +.+..-++|  .++.++|.|
T Consensus       365 RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  365 RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEeccccccceeeEeecc
Confidence            988887777  677777763

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.09  E-value=1e-09  Score=102.67  Aligned_cols=201  Identities=11%  Similarity=0.137  Sum_probs=134.6

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC---CC
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KE   82 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~---~~   82 (321)
                      .++||++....-..+.-.-+ -.-.+.++.|+....  ++++++.          +..+..++...+....|++-   ..
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~n~--lvvas~~----------gdk~~~~~~K~g~~~~Vp~~~k~~g   79 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRRNF--LVVASMA----------GDKVMRIKEKDGKTPEVPRVRKLTG   79 (673)
T ss_pred             ceEEeecccccCccccccCC-CCCcceeeeccccce--EEEeecC----------CceeEEEecccCCCCccceeecccc
Confidence            57899988743112221112 123477899998654  4544332          22233333322222222221   11


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      +.-.+++....+.++  |.|...+.+.|||++.+.++.+   |...|.++.|+-...+|+..+   ..|+|.|..+.++.
T Consensus        80 d~~~Cv~~~s~S~y~--~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs---~gGdiiih~~~t~~  154 (673)
T KOG4378|consen   80 DNAFCVACASQSLYE--ISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS---DGGDIIIHGTKTKQ  154 (673)
T ss_pred             chHHHHhhhhcceee--eccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec---cCCcEEEEecccCc
Confidence            222233333333444  4477788999999998877776   778899999999999999998   88999999999998


Q ss_pred             EEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee----EEeccCceEEEEEecCCCCCCCC
Q 020756          160 QLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF----FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       160 ~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l----~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ....|...   .+..+.+||.-++++...+     .++.|.+||++|..-    .+.|...+..++|+|..+.++-.
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr~lL~~as-----d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIAS-----DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             cccceecCCCCeEEEeecccccceeeEeec-----cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence            87777765   3446899999999887776     478899999999754    33566788889999988776644

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=8.6e-09  Score=95.79  Aligned_cols=202  Identities=11%  Similarity=0.113  Sum_probs=145.1

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEE----EcCCCc--ee-
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL----TTDGTH--EG-   75 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l----~~~g~~--~~-   75 (321)
                      .-+.+-+|.+.+   |..+..+..+=.+...+.|+-||.+++...     +.     |...+|.+    +.+...  .. 
T Consensus       101 i~g~lYlWelss---G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-----kD-----g~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen  101 ISGNLYLWELSS---GILLNVLSAHYQSITCLKFSDDGSHIITGS-----KD-----GAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             ccCcEEEEEecc---ccHHHHHHhhccceeEEEEeCCCcEEEecC-----CC-----ccEEEEEEEeecccccCCCccce
Confidence            678899999999   777766666656788899999999887631     11     33334443    222221  11 


Q ss_pred             eeecCCCCCeEEEEECcCCC--EEEEEEccCCCeEEEEeCC-CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           76 LVPLRKEGPVHDVQWSYSGS--EFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        76 ~v~l~~~~~v~~~~wsP~g~--~l~~~~g~~~~~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      .+--+|.-+|+|+...+-|.  ++++  ...|.++++||+. +..+.++ -...++++...|-++.+..++   .+|.|.
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~T--aS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt---~~G~I~  242 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYT--ASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT---EEGKIF  242 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEE--ecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC---CcceEE
Confidence            12224788999999987654  4555  4779999999995 5566666 467889999999999998888   889999


Q ss_pred             EEECCCC----------------eEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-E--E
Q 020756          152 FWDYVDG----------------KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-F--K  208 (321)
Q Consensus       152 iwD~~~~----------------~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~--~  208 (321)
                      +.++.+.                ..+..+.+|    .|++++.|-||..|+++.      .|+.+.|||+..+++ .  .
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd------~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD------EDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC------CCCCEEEEecchHHHHHHHh
Confidence            8876532                233334443    689999999999999999      499999999965544 2  2


Q ss_pred             eccCceEEEEEecCCCCCCC
Q 020756          209 KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       209 ~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ...+.|..+..+|-.+.++.
T Consensus       317 ~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  317 TSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             hhccccceeEeeccccceec
Confidence            25578888888886655554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.08  E-value=1.9e-09  Score=98.68  Aligned_cols=101  Identities=18%  Similarity=0.366  Sum_probs=85.5

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--------C-----c---ee-EEe--CCcCeeeEEEcCCCCeEEEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--------C-----R---PI-LEL--GSGPYNTVRWNPKGKFLCLA  141 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--------~-----~---~~-~~~--~~~~~~~~~~sPdG~~l~~~  141 (321)
                      |...|+.+.|+|+|+.|+.  |..++.+.+|-..        +     +   .+ ..+  |...+..++|+||+.+++++
T Consensus        64 H~~aVN~vRf~p~gelLAS--g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~  141 (434)
T KOG1009|consen   64 HTRAVNVVRFSPDGELLAS--GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG  141 (434)
T ss_pred             CcceeEEEEEcCCcCeeee--cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence            7899999999999999998  4667899999553        2     1   11 112  66788999999999999999


Q ss_pred             ccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s  186 (321)
                      +   .+..+++||+..|..+..+..|  .+..++|.|-++|+++-++
T Consensus       142 s---~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  142 S---VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             e---ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc
Confidence            9   9999999999999998888776  6777999999999999886

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.07  E-value=7.3e-09  Score=97.20  Aligned_cols=111  Identities=17%  Similarity=0.364  Sum_probs=91.3

Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      +...++++.++.|+|.| .+++  |...+...+.|.....+.++  ...+++.++|||+|.+|++++   .|+.|+||-+
T Consensus       403 t~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs---~d~~iyiy~V  476 (626)
T KOG2106|consen  403 TKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS---HDNHIYIYRV  476 (626)
T ss_pred             EEEecCceeEeeccCcc-eEEE--eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec---CCCeEEEEEE
Confidence            33357899999999999 6666  77788999999987766665  478999999999999999999   8999999987


Q ss_pred             CCC-e---EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          156 VDG-K---QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       156 ~~~-~---~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ... .   .+.......++.+.||+|++||.+-+      .|-.+..|.
T Consensus       477 s~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S------~d~eiLyW~  519 (626)
T KOG2106|consen  477 SANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS------GDYEILYWK  519 (626)
T ss_pred             CCCCcEEEEeeeecCceeEEeeecCCCceEEecc------CceEEEEEc
Confidence            643 2   33444445899999999999999998      489999994

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.07  E-value=4.3e-08  Score=92.12  Aligned_cols=140  Identities=14%  Similarity=0.187  Sum_probs=112.2

Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      +.+.|.+..-.++-+|+..+|+++  ..|+.+.||+ +.+++.+ +-..++.++.|+|.| .|+++.   ..|...+.|.
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~--gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt---~~G~w~V~d~  435 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTC--GQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGT---ATGRWFVLDT  435 (626)
T ss_pred             EEEecccceeeEEcCCChhheeec--cCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEee---ccceEEEEec
Confidence            334577788899999999999997  6688999999 4444443 357789999999999 778777   7899999999


Q ss_pred             CCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee--cCcee---EEeccCceEEEEEecCCCCCCCC
Q 020756          156 VDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGSLF---FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       156 ~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~--~g~~l---~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++...+...... .++.+.|||||.+||.++      .|+.|+||.+  +|+.+   -+.+-..+..+.|++|+..+.+.
T Consensus       436 e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  436 ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             ccceeEEEEecCCceEEEEEcCCCCEEEEec------CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence            987766655443 788899999999999999      4999999998  45554   22334789999999999988864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=7.8e-10  Score=112.11  Aligned_cols=180  Identities=17%  Similarity=0.326  Sum_probs=130.6

Q ss_pred             CCceEEEEEcCCcCCCCceee-eecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            3 SPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~-~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      -.|.|-||++-+.  ..+..- ..-+..++..+.||..-..|+..++    .+     |..  ..|++... ...+.+..
T Consensus       137 ~~geI~iWDlnn~--~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s----~s-----g~~--~iWDlr~~-~pii~ls~  202 (1049)
T KOG0307|consen  137 DDGEILIWDLNKP--ETPFTPGSQAPPSEIKCLSWNRKVSHILASGS----PS-----GRA--VIWDLRKK-KPIIKLSD  202 (1049)
T ss_pred             CCCcEEEeccCCc--CCCCCCCCCCCcccceEeccchhhhHHhhccC----CC-----CCc--eeccccCC-Cccccccc
Confidence            4688999999984  344433 3336788999999999888887532    11     222  33344443 34455443


Q ss_pred             C---CCeEEEEECcCCC-EEEEEEccCC-CeEEEEeCCCc--eeEE--eCCcCeeeEEEcCCC-CeEEEEccCCCCCcEE
Q 020756           82 E---GPVHDVQWSYSGS-EFAVVYGFMP-ASATIFNKKCR--PILE--LGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMA  151 (321)
Q Consensus        82 ~---~~v~~~~wsP~g~-~l~~~~g~~~-~~i~i~d~~~~--~~~~--~~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~  151 (321)
                      .   ..++.++|+|++. +++++.++.. -.|.+||++.-  ++..  .|...+-++.|++.+ ++|+++|   .|+.|.
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg---kD~~ii  279 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG---KDNRII  279 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc---CCCCee
Confidence            3   3488999999866 6666644322 28999998643  4444  488899999999988 7888888   999999


Q ss_pred             EEECCCCeEEEeeeC--CCeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeecCce
Q 020756          152 FWDYVDGKQLGTTRA--ECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       152 iwD~~~~~~i~~~~~--~~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      +|+.++++.+..+..  ..+..+.|+|..- .|+.++      .|+.|.||.+.|..
T Consensus       280 ~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as------fdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  280 CWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS------FDGKISIYSLQGTD  330 (1049)
T ss_pred             EecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe------eccceeeeeeecCC
Confidence            999999999998876  4788999999766 445555      69999999996543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=2.6e-09  Score=98.09  Aligned_cols=132  Identities=19%  Similarity=0.269  Sum_probs=103.3

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      ..++++.+|..+++  |..|+.+++|+. ....+..+  |+..|.++.|||||++|++.|   .+ ...|||++++..+.
T Consensus       148 k~vaf~~~gs~lat--gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig---~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLAT--GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG---AD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeee--ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec---CC-ceEEEEeccCchhh
Confidence            67999999999999  678999999995 44444444  789999999999999999998   77 88999988761111


Q ss_pred             e-------------------------------------------ee------------CC-CeeeEEEccCCCEEEEEEc
Q 020756          163 T-------------------------------------------TR------------AE-CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       163 ~-------------------------------------------~~------------~~-~~~~~~wSpdG~~l~t~~s  186 (321)
                      .                                           ..            .+ .+++++.|.||+|++.++ 
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT-  300 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT-  300 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec-
Confidence            0                                           00            12 567789999999999999 


Q ss_pred             CCceeecCcEEEEeecC-cee---EEeccCceEEEEEecCCCCCCCC
Q 020756          187 APRLQIDNGIKIFHHNG-SLF---FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       187 ~~rl~~d~~v~iw~~~g-~~l---~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                           .|+.|-|++... +.+   .+.|..-|..+.|+|+..++.+.
T Consensus       301 -----~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  301 -----MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             -----cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence                 599999999843 333   23355689999999998877764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.06  E-value=6.4e-09  Score=96.49  Aligned_cols=159  Identities=17%  Similarity=0.261  Sum_probs=110.7

Q ss_pred             cceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ce---eEEe-CCcCeeeEEEc
Q 020756           60 GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RP---ILEL-GSGPYNTVRWN  132 (321)
Q Consensus        60 g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~---~~~~-~~~~~~~~~~s  132 (321)
                      |..+++.+..++..-..+. -|+..|..++++|-..+++.. +..|.+++|||++.   +.   +.++ |...|++..||
T Consensus       301 G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  301 GNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLAT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             cceEEEEeecCCccchhhh-hhhcccceeecCCCCchheee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            4444555555554222222 256699999999987765544 46688999999842   22   3444 88899999999


Q ss_pred             CCCCeEEEEccCCCCCcEEEEECC----CCeEEEeeeCC-------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          133 PKGKFLCLAGFGNLPGDMAFWDYV----DGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       133 PdG~~l~~~g~~n~~g~i~iwD~~----~~~~i~~~~~~-------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      |.|-.|++.+   .|..|.|||..    ......++.+.       ......|.||-.+|+.+.      .-..|-|+|-
T Consensus       379 Ps~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~------~~r~IDv~~~  449 (498)
T KOG4328|consen  379 PSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR------YPRPIDVFDG  449 (498)
T ss_pred             CCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec------cCcceeEEcC
Confidence            9988899998   89999999983    33455555443       233479999999999888      4667999998


Q ss_pred             cCce-eEEeccCc---e-EEEEEecCCCCCCCC
Q 020756          202 NGSL-FFKKMFDK---L-FQAEWKPVSPDKFGD  229 (321)
Q Consensus       202 ~g~~-l~~~~~~~---~-~~~~w~P~~~~~~~~  229 (321)
                      +|+. +...+...   | .-..|+|....++..
T Consensus       450 ~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG  482 (498)
T KOG4328|consen  450 NGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG  482 (498)
T ss_pred             CCCEEeeeccCccccccccceeecccccceecc
Confidence            8776 45444432   2 346899987766654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.06  E-value=2.6e-07  Score=86.72  Aligned_cols=178  Identities=16%  Similarity=0.261  Sum_probs=114.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecc-------------cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFF-------------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD   70 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f-------------~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~   70 (321)
                      -+.|.+|++...  +........+             ......+.++|+|+++++..   .        |.+.|+.++.+
T Consensus       108 ~g~v~v~~l~~~--g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d---l--------G~D~v~~~~~~  174 (345)
T PF10282_consen  108 GGSVSVFPLDDD--GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD---L--------GADRVYVYDID  174 (345)
T ss_dssp             TTEEEEEEECTT--SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE---T--------TTTEEEEEEE-
T ss_pred             CCeEEEEEccCC--cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe---c--------CCCEEEEEEEe
Confidence            467888999872  2222221111             12234689999999998751   1        44556666554


Q ss_pred             CCc-----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--Cc---eeEEeC--------CcCeeeEEEc
Q 020756           71 GTH-----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CR---PILELG--------SGPYNTVRWN  132 (321)
Q Consensus        71 g~~-----~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~---~~~~~~--------~~~~~~~~~s  132 (321)
                      ...     ...+.+.....-..+.|+|+|+++.++ ......|.+|++.  ..   .+..+.        ......+.+|
T Consensus       175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is  253 (345)
T PF10282_consen  175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS  253 (345)
T ss_dssp             TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred             CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence            432     123344555667789999999998887 4567799999875  22   222221        1246789999


Q ss_pred             CCCCeEEEEccCCCCCcEEEEECC--CC--eEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          133 PKGKFLCLAGFGNLPGDMAFWDYV--DG--KQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       133 PdG~~l~~~g~~n~~g~i~iwD~~--~~--~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      |||++|.++.-+  ...|.+|+++  ++  +.+..+..  .....+.++|||++|+++..     .++.|.+|+++
T Consensus       254 pdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~-----~s~~v~vf~~d  322 (345)
T PF10282_consen  254 PDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ-----DSNTVSVFDID  322 (345)
T ss_dssp             TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET-----TTTEEEEEEEE
T ss_pred             cCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec-----CCCeEEEEEEe
Confidence            999999998733  4789999984  33  34444432  35788999999999999985     47889999883

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.05  E-value=4.6e-09  Score=93.57  Aligned_cols=183  Identities=14%  Similarity=0.277  Sum_probs=133.3

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEec------------ccC----CCceeecceeEEE
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD------------VDK----TNQSYYGESKLNY   66 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d------------~d~----t~~s~~g~~~l~~   66 (321)
                      ++..-+||.+.+   +.++.+-.-+...+..++|++.|..++......            +.+    ++.+  ++..+-.
T Consensus       168 ADhTA~iWs~Es---g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS--sEeE~e~  242 (481)
T KOG0300|consen  168 ADHTARIWSLES---GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHS--SEEEEEH  242 (481)
T ss_pred             cccceeEEeecc---ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCC--chhhhhc
Confidence            456679999999   899999998888899999999887766542110            001    1111  1111110


Q ss_pred             -------E----EcCCCceeeeec----CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeee
Q 020756           67 -------L----TTDGTHEGLVPL----RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNT  128 (321)
Q Consensus        67 -------l----~~~g~~~~~v~l----~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~  128 (321)
                             .    ..+|- .-++++    .|.+.|.++.|--.|+++++.  .-|.+..+||+. ++++..+  |....+.
T Consensus       243 sDe~~~d~d~~~~sD~~-tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa--SWDRTAnlwDVEtge~v~~LtGHd~ELtH  319 (481)
T KOG0300|consen  243 SDEHNRDTDSSEKSDGH-TIRVPLMRLTGHRAVVSACDWLAGGQQMVTA--SWDRTANLWDVETGEVVNILTGHDSELTH  319 (481)
T ss_pred             ccccccccccccccCCc-eeeeeeeeeeccccceEehhhhcCcceeeee--eccccceeeeeccCceeccccCcchhccc
Confidence                   0    01111 222332    378899999999999999884  778899999995 4555555  7888899


Q ss_pred             EEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +.-+|..+++++++   .|.+.++||.+.- ..+..|.+|  .++++.|.-|.+ +++++.      |.+++|||+..
T Consensus       320 cstHptQrLVvTsS---rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSD------DrTvKvWdLrN  387 (481)
T KOG0300|consen  320 CSTHPTQRLVVTSS---RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSD------DRTVKVWDLRN  387 (481)
T ss_pred             cccCCcceEEEEec---cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCC------CceEEEeeecc
Confidence            99999999999998   8999999998743 567888887  688888988876 677774      99999999853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.05  E-value=1.2e-07  Score=87.41  Aligned_cols=203  Identities=17%  Similarity=0.301  Sum_probs=134.8

Q ss_pred             CCceEEEEEcCCcCCCC-ceeeeecccC-ccceEEe-CCCCCeeEEEEEecccCCCceeecceeEEEEEcCC-Cceeeee
Q 020756            3 SPASVQIYACGKDLQSQ-PLARRSFFRC-STVQLNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVP   78 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~-~i~~~~~f~~-~~~~~~W-sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g-~~~~~v~   78 (321)
                      ..+.|.+|++..   .. .+........ ....+.+ ++++..++.... ..|       +  .+..++... .......
T Consensus        85 ~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d-------~--~~~~~~~~~~~~~~~~~  151 (466)
T COG2319          85 SDGTIKLWDLDN---GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-SLD-------G--TVKLWDLSTPGKLIRTL  151 (466)
T ss_pred             CCCcEEEEEcCC---CceeEEEEeccCCCceeeEEEECCCcceEEeccC-CCC-------c--cEEEEEecCCCeEEEEE
Confidence            367888999887   33 3444433222 3455555 777773333211 111       1  234444443 2233344


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEE-ccCCCCCcEEEEE
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWD  154 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~-g~~n~~g~i~iwD  154 (321)
                      ..|...|.++.|+|++..++.. +..++.+.+|+... ..+..+  |...+.++.|+|++..++++ +   .++.|.+||
T Consensus       152 ~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~d~~i~~wd  227 (466)
T COG2319         152 EGHSESVTSLAFSPDGKLLASG-SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS---SDGTIRLWD  227 (466)
T ss_pred             ecCcccEEEEEECCCCCEEEec-CCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec---CCCcEEEEE
Confidence            4678899999999999977764 22488999999974 455554  67899999999999945544 5   789999999


Q ss_pred             CCCCeEEE-eeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce--e--EEeccCceEEEEEecCCCCCCC
Q 020756          155 YVDGKQLG-TTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--F--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       155 ~~~~~~i~-~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~--l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ...+..+. .+..+ ......|+|++.++++++      .|+.+++|+.....  +  ...+...+..+.|.|+...++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS------SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             CCCCcEEeeecCCCCcceeEeECCCCCEEEEec------CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence            98777776 46555 221228999998888777      49999999985322  2  2245678899999996665554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.04  E-value=1.1e-07  Score=89.11  Aligned_cols=210  Identities=18%  Similarity=0.211  Sum_probs=132.2

Q ss_pred             CCceEEEEEcCCcC-CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-c-
Q 020756            3 SPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-L-   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~-~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l-   79 (321)
                      ..+.|..|.+.... .-+.+.+........|.+..+|+|++|++.--         ..|...++.++.+|....... + 
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany---------~~g~v~v~~l~~~g~l~~~~~~~~  130 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY---------GGGSVSVFPLDDDGSLGEVVQTVR  130 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET---------TTTEEEEEEECTTSEEEEEEEEEE
T ss_pred             CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc---------cCCeEEEEEccCCcccceeeeecc
Confidence            56788899988721 01233333333456689999999999988520         024444555555554333221 1 


Q ss_pred             ----------CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce--e---E--Ee-CCcCeeeEEEcCCCCeEEEE
Q 020756           80 ----------RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I---L--EL-GSGPYNTVRWNPKGKFLCLA  141 (321)
Q Consensus        80 ----------~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~--~---~--~~-~~~~~~~~~~sPdG~~l~~~  141 (321)
                                ......|.+.|+|+|++++++.-.. ..|.+|+++...  +   .  .+ ....-..+.|+|+|+++.+.
T Consensus       131 ~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~  209 (345)
T PF10282_consen  131 HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV  209 (345)
T ss_dssp             SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE
T ss_pred             cCCCCCcccccccccceeEEECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe
Confidence                      1234678999999999998875333 389999885432  2   2  22 22344578899999999887


Q ss_pred             ccCCCCCcEEEEECC--CCe--EEEeeeC-------C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---Ccee
Q 020756          142 GFGNLPGDMAFWDYV--DGK--QLGTTRA-------E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLF  206 (321)
Q Consensus       142 g~~n~~g~i~iwD~~--~~~--~i~~~~~-------~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~l  206 (321)
                      .  .+.+.|.++++.  ++.  .+.....       . ....+.+||||++|.++..     ..+.|.+|+++   |.+-
T Consensus       210 ~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~  282 (345)
T PF10282_consen  210 N--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-----GSNSISVFDLDPATGTLT  282 (345)
T ss_dssp             E--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-----TTTEEEEEEECTTTTTEE
T ss_pred             c--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-----cCCEEEEEEEecCCCceE
Confidence            6  366899999987  442  2332221       1 4567999999999998884     58899999994   3433


Q ss_pred             EEe--c--cCceEEEEEecCCCCCCCC
Q 020756          207 FKK--M--FDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 ~~~--~--~~~~~~~~w~P~~~~~~~~  229 (321)
                      ...  .  -..-..+.++|++..++-.
T Consensus       283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va  309 (345)
T PF10282_consen  283 LVQTVPTGGKFPRHFAFSPDGRYLYVA  309 (345)
T ss_dssp             EEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence            222  1  2347889999999888854

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.03  E-value=2.8e-08  Score=97.75  Aligned_cols=179  Identities=13%  Similarity=0.147  Sum_probs=126.4

Q ss_pred             ceEEEEEcCCcCCCCceee-eecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-CCC
Q 020756            5 ASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~-~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~~~   82 (321)
                      ..+++|+.-+   +..+.. ..-+..++..+.+.. |..+++..++|         .  ++.+++...+ .+...+ .|.
T Consensus       228 ~tl~~~~~~~---~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D---------~--t~rvWd~~sg-~C~~~l~gh~  291 (537)
T KOG0274|consen  228 STLHLWDLNN---GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD---------K--TERVWDCSTG-ECTHSLQGHT  291 (537)
T ss_pred             ceeEEeeccc---ceEEEeeccCCCCCceeEEEec-CCCEEEEEecC---------C--cEEeEecCCC-cEEEEecCCC
Confidence            4567888877   566655 666667777777766 66666655433         1  2444454443 344333 477


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|..+...+.    ..+.|.+|.+|++|++... .+..+  |..+|+++..+  +.+|++++   .|+.|.+||..+++
T Consensus       292 stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs---~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  292 SSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGS---YDGTVKVWDPRTGK  362 (537)
T ss_pred             ceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEe---cCceEEEEEhhhce
Confidence            77777776642    2333789999999999744 44444  78999999998  88999998   89999999999999


Q ss_pred             EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--ee--EEeccCceE
Q 020756          160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF--FKKMFDKLF  215 (321)
Q Consensus       160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l--~~~~~~~~~  215 (321)
                      ++.++.+|  .+..+.+... .++++++      .|..|++||+.+.  ++  +..|..-+.
T Consensus       363 cl~sl~gH~~~V~sl~~~~~-~~~~Sgs------~D~~IkvWdl~~~~~c~~tl~~h~~~v~  417 (537)
T KOG0274|consen  363 CLKSLSGHTGRVYSLIVDSE-NRLLSGS------LDTTIKVWDLRTKRKCIHTLQGHTSLVS  417 (537)
T ss_pred             eeeeecCCcceEEEEEecCc-ceEEeee------eccceEeecCCchhhhhhhhcCCccccc
Confidence            99999998  5666666555 8888888      5999999999765  33  444544443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=1.8e-08  Score=93.77  Aligned_cols=198  Identities=12%  Similarity=0.019  Sum_probs=145.2

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      .|-+|.+-.   .....++-.-......+.=+|+|.+|+..+-            ..+||+|.+..+..-.+--.|-.+|
T Consensus        62 ~l~vw~i~k---~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i------------~g~lYlWelssG~LL~v~~aHYQ~I  126 (476)
T KOG0646|consen   62 LLHVWEILK---KDQVVQYIVLPGPVHALASSNLGYFLLAGTI------------SGNLYLWELSSGILLNVLSAHYQSI  126 (476)
T ss_pred             cccccccCc---hhhhhhhcccccceeeeecCCCceEEEeecc------------cCcEEEEEeccccHHHHHHhhccce
Confidence            455666655   3334455555666777788999999877421            1247888776664433444589999


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeC----------CCceeEEe--CCcCeeeEEEcCC--CCeEEEEccCCCCCcEE
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNK----------KCRPILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~----------~~~~~~~~--~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~  151 (321)
                      +++.|+-||.+|++  |..|+.|.+|++          ...+++.|  |.-+|.++...+-  ...|++++   .|.+++
T Consensus       127 TcL~fs~dgs~iiT--gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS---~D~t~k  201 (476)
T KOG0646|consen  127 TCLKFSDDGSHIIT--GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS---EDRTIK  201 (476)
T ss_pred             eEEEEeCCCcEEEe--cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec---CCceEE
Confidence            99999999999998  688999999975          12466666  6678888766654  35788888   999999


Q ss_pred             EEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---c----------------eeEEecc
Q 020756          152 FWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---S----------------LFFKKMF  211 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---~----------------~l~~~~~  211 (321)
                      +||+..+..+.++.-+ .+.++..+|-++.+..++.      ++.|.+.++.+   +                ..+.+|.
T Consensus       202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~------~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~  275 (476)
T KOG0646|consen  202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE------EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE  275 (476)
T ss_pred             EEEeccceeeEEEecCCcceeEEEcccccEEEecCC------cceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence            9999999998888776 7889999999999999984      88877776622   1                1244455


Q ss_pred             C--ceEEEEEecCCCCCCCC
Q 020756          212 D--KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       212 ~--~~~~~~w~P~~~~~~~~  229 (321)
                      .  .+..++.+-|+..+++.
T Consensus       276 ~~~~ITcLais~DgtlLlSG  295 (476)
T KOG0646|consen  276 NESAITCLAISTDGTLLLSG  295 (476)
T ss_pred             CCcceeEEEEecCccEEEee
Confidence            4  78888888888777654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.01  E-value=4.5e-08  Score=94.70  Aligned_cols=206  Identities=17%  Similarity=0.319  Sum_probs=143.6

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCC---------Cce-eecceeEEEEEcCC-
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT---------NQS-YYGESKLNYLTTDG-   71 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t---------~~s-~~g~~~l~~l~~~g-   71 (321)
                      +..++-||+...   +..+.+...+|.-+..+.|+.||..++...   .|+.         |-. |...+.+..+..+- 
T Consensus        31 Ag~rlliyD~nd---G~llqtLKgHKDtVycVAys~dGkrFASG~---aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~  104 (1081)
T KOG1538|consen   31 AGSRLLVYDTSD---GTLLQPLKGHKDTVYCVAYAKDGKRFASGS---ADKSVIIWTSKLEGILKYSHNDAIQCMSFNPI  104 (1081)
T ss_pred             cCCEEEEEeCCC---cccccccccccceEEEEEEccCCceeccCC---CceeEEEecccccceeeeccCCeeeEeecCch
Confidence            456788888877   778888888888888899999998775432   1111         110 21222222222111 


Q ss_pred             ----------------Cceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-----CCcCeeeE
Q 020756           72 ----------------THEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTV  129 (321)
Q Consensus        72 ----------------~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-----~~~~~~~~  129 (321)
                                      ...+.|.- .....|.+++|..||++|++  |-.+|+|.|-+..+++...+     .+.++.++
T Consensus       105 ~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal--G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi  182 (1081)
T KOG1538|consen  105 THQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL--GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSI  182 (1081)
T ss_pred             HHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE--eccCceEEeecCCCCcceEEeCCCCCCCCceEE
Confidence                            00011110 12457889999999999999  56678999998877655544     36789999


Q ss_pred             EEcCCC-----CeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          130 RWNPKG-----KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       130 ~~sPdG-----~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .|+|..     ..|++..   ...++.||.+ +|+.|.....  ....++++-++|+|++.+++      |..+++|.-.
T Consensus       183 ~~~p~sg~G~~di~aV~D---W~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs------dk~L~~fTR~  252 (1081)
T KOG1538|consen  183 CWNPSSGEGRNDILAVAD---WGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGS------DKQLSLFTRD  252 (1081)
T ss_pred             EecCCCCCCccceEEEEe---ccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccC------CCceEEEeec
Confidence            999963     3677776   7788999988 6777765444  26778899999999999997      9999999999


Q ss_pred             CceeEE-ecc-CceEEEEEecCCCCC
Q 020756          203 GSLFFK-KMF-DKLFQAEWKPVSPDK  226 (321)
Q Consensus       203 g~~l~~-~~~-~~~~~~~w~P~~~~~  226 (321)
                      |-++-. +.. ..+|.+.-+|.+.+.
T Consensus       253 GvrLGTvg~~D~WIWtV~~~PNsQ~v  278 (1081)
T KOG1538|consen  253 GVRLGTVGEQDSWIWTVQAKPNSQYV  278 (1081)
T ss_pred             CeEEeeccccceeEEEEEEccCCceE
Confidence            988833 333 479999999987654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=3.7e-08  Score=91.20  Aligned_cols=178  Identities=13%  Similarity=0.187  Sum_probs=125.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |++..|.||++..   +++......+...+..+.|+|.-..+++..         +|-+...|+.+..-+......  .-
T Consensus       263 saD~TV~lWD~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---------s~D~~V~l~D~R~~~~s~~~w--k~  328 (463)
T KOG0270|consen  263 SADKTVKLWDVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSG---------SYDGTVALKDCRDPSNSGKEW--KF  328 (463)
T ss_pred             CCCceEEEEEcCC---CCcceehhhcCCceeEEEecCCCceEEEec---------cccceEEeeeccCccccCceE--Ee
Confidence            5778999999999   888888888888889999999866666642         344555555443222212222  24


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEe--CCcCeeeEEEcCCCCeE-EEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG~~l-~~~g~~n~~g~i~iwD~~  156 (321)
                      .+.|-.+.|.|.....+++ +..+|.++-||++  ++++.++  |.++|.++.+++.-..+ ++++   .++.|.+|++.
T Consensus       329 ~g~VEkv~w~~~se~~f~~-~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~  404 (463)
T KOG0270|consen  329 DGEVEKVAWDPHSENSFFV-STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFD  404 (463)
T ss_pred             ccceEEEEecCCCceeEEE-ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeec
Confidence            5889999999998877766 5778999999996  4677777  89999999999986654 4555   78999999976


Q ss_pred             CCe--EEE--eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          157 DGK--QLG--TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       157 ~~~--~i~--~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .-.  .+.  .+.-....+++..|+--++++.+.     ..+.++|||+.
T Consensus       405 ~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG-----~k~~~~vwd~~  449 (463)
T KOG0270|consen  405 VDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG-----EKAVLRVWDIF  449 (463)
T ss_pred             CCCCcccccccccccceeecccCCCcceEEEecC-----ccceEEEeecc
Confidence            432  222  121223455677787555554442     25579999984

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=8.4e-08  Score=92.90  Aligned_cols=158  Identities=16%  Similarity=0.255  Sum_probs=120.2

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      ...++.|++|.+.+.|++.- +         .|...+|.+..+--.+..+..+....|.+++|++.|+.|-+   ...+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsR-t---------~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~---g~sg~   91 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSR-T---------DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSS---GLSGS   91 (691)
T ss_pred             ccceEEEEEeccCCceeeec-c---------CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEee---cCCce
Confidence            57888999999888877641 1         15566787766554456666677889999999976665544   45789


Q ss_pred             EEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee--C--CCeeeEEEccCCCE
Q 020756          108 ATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--A--ECSVTSEWSPDGRY  180 (321)
Q Consensus       108 i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~--~~~~~~~wSpdG~~  180 (321)
                      |+-||+ ..+++..+  -.+.+.+++-+|.+..+++++   .+|.+++++...++......  .  ..+.+++|+|+|.+
T Consensus        92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~  168 (691)
T KOG2048|consen   92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK  168 (691)
T ss_pred             EEEEecccCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEecCCccE
Confidence            999998 56777776  467889999999999999998   88988888877665543321  1  36888999999999


Q ss_pred             EEEEEcCCceeecCcEEEEeec-CceeE
Q 020756          181 FMTATTAPRLQIDNGIKIFHHN-GSLFF  207 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~-g~~l~  207 (321)
                      |+.|+.      |+-|++||.. |..++
T Consensus       169 i~~Gs~------Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  169 IAGGSI------DGVIRIWDVKSGQTLH  190 (691)
T ss_pred             EEeccc------CceEEEEEcCCCceEE
Confidence            999995      9999999984 44443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.98  E-value=3.5e-08  Score=91.31  Aligned_cols=179  Identities=13%  Similarity=0.176  Sum_probs=130.4

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  111 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~  111 (321)
                      ..|.||..-+.+|+..+.           ..++.+|++..+.-....-.|.+.|+.++|+|.--.+.+. |++|+++.|+
T Consensus       247 l~Ls~n~~~~nVLaSgsa-----------D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs-Gs~D~~V~l~  314 (463)
T KOG0270|consen  247 LALSWNRNFRNVLASGSA-----------DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLS-GSYDGTVALK  314 (463)
T ss_pred             HHHHhccccceeEEecCC-----------CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEe-ccccceEEee
Confidence            478999998998886432           2236677776664444433588999999999976655554 8899999999


Q ss_pred             eCCC--ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEE
Q 020756          112 NKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       112 d~~~--~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~  185 (321)
                      |.+.  +.-..+ -.+.+..+.|.|+....++++.  .+|.|+-+|+++. +++-++.+|  .|+.+++++.-..+++..
T Consensus       315 D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~  392 (463)
T KOG0270|consen  315 DCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA  392 (463)
T ss_pred             eccCccccCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec
Confidence            9973  111122 3678899999999988877772  5799999998865 888888887  799999998755554444


Q ss_pred             cCCceeecCcEEEEeecC---ceeEE--eccCceEEEEEecCCCCCCCC
Q 020756          186 TAPRLQIDNGIKIFHHNG---SLFFK--KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       186 s~~rl~~d~~v~iw~~~g---~~l~~--~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +     .|..++||++.+   ..++.  .....+..++..|+-+.++..
T Consensus       393 s-----~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~  436 (463)
T KOG0270|consen  393 S-----TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAF  436 (463)
T ss_pred             c-----ccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEe
Confidence            4     399999999954   33322  233567778888877777654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.97  E-value=1.8e-08  Score=90.25  Aligned_cols=115  Identities=15%  Similarity=0.311  Sum_probs=92.1

Q ss_pred             CCCCCeEEEEECcC---CCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEE
Q 020756           80 RKEGPVHDVQWSYS---GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAF  152 (321)
Q Consensus        80 ~~~~~v~~~~wsP~---g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~i  152 (321)
                      ++++..+.++|+-|   |+-|.++.| .-|.|+|.|+... ....+  |.+.+|.+.++|+-. +|++++   .|..|++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G-~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S---kD~svRl  162 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGG-YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS---KDHSVRL  162 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeec-ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec---CCceEEE
Confidence            46788899999754   555666655 4579999998443 33333  778899999999874 555566   8999999


Q ss_pred             EECCCCeEEEeeeC---C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          153 WDYVDGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       153 wD~~~~~~i~~~~~---~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      ||+++..|+..+.+   |  .+.++.||+||.+|++++      .|..+++|+++-.
T Consensus       163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG------mDhslk~W~l~~~  213 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG------MDHSLKLWRLNVK  213 (385)
T ss_pred             EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC------CcceEEEEecChh
Confidence            99999999988764   4  788999999999999999      5999999998743

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.96  E-value=1.2e-08  Score=98.80  Aligned_cols=175  Identities=16%  Similarity=0.176  Sum_probs=115.7

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--eecCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPLRKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--v~l~~~   82 (321)
                      +.|+||+..+.   ..+....++.-.+.+|.|||||++||...   .|++-.       ||...-+-..+..  ..-.|.
T Consensus       552 AvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvs---RDRt~s-------l~~~~~~~~~e~~fa~~k~Ht  618 (764)
T KOG1063|consen  552 AVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVS---RDRTVS-------LYEVQEDIKDEFRFACLKAHT  618 (764)
T ss_pred             eEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEee---cCceEE-------eeeeecccchhhhhccccccc
Confidence            57999999984   44556677777899999999999998864   333322       3333221111111  122478


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEE---e-CCcCeeeEEEcCCC----CeEEEEccCCCCCcEE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILE---L-GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMA  151 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~---~-~~~~~~~~~~sPdG----~~l~~~g~~n~~g~i~  151 (321)
                      ..|-++.|+|++.+|+++  ..|.++.+|.....   -+..   + ....+..++|.|--    ..++..|+  ..|.|.
T Consensus       619 RIIWdcsW~pde~~FaTa--SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl--e~GeI~  694 (764)
T KOG1063|consen  619 RIIWDCSWSPDEKYFATA--SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL--EKGEIV  694 (764)
T ss_pred             eEEEEcccCcccceeEEe--cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEe--cccEEE
Confidence            889999999999999996  77999999976322   2222   2 46778888888742    23666664  459999


Q ss_pred             EEECCCC---------eEEEeee---CC--CeeeEEEccC----------CCEEEEEEcCCceeecCcEEEEeec
Q 020756          152 FWDYVDG---------KQLGTTR---AE--CSVTSEWSPD----------GRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       152 iwD~~~~---------~~i~~~~---~~--~~~~~~wSpd----------G~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +|.....         .......   .+  .+..+.|+|.          ..+|+.++.      |..++|++++
T Consensus       695 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~------D~~vri~nv~  763 (764)
T KOG1063|consen  695 LWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD------DESVRIFNVD  763 (764)
T ss_pred             EEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc------cceeEEeecc
Confidence            9985411         1111111   11  5677999975          445678874      9999998864

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=3.3e-09  Score=100.49  Aligned_cols=150  Identities=17%  Similarity=0.248  Sum_probs=111.2

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEeCCcCeeeEEEcCCCCeEEEEccCC--------CCCcEEEEEC
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILELGSGPYNTVRWNPKGKFLCLAGFGN--------LPGDMAFWDY  155 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n--------~~g~i~iwD~  155 (321)
                      -+-+.|||.|.+|++.+-   .-|.+|-- ....++.|.+..+.-+.|||+.++|++-+..-        ....|.|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk---~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHK---QGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEec---cceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            456899999999999753   35889965 34567778778899999999999999976521        2358999999


Q ss_pred             CCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCC
Q 020756          156 VDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       156 ~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~  227 (321)
                      .+|.+...|...     .-.-+.||.|++|+|.-+       .++|.||+...-.+   .....+.+.+++|+|.+.-|.
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-------~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-------GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEec-------cceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            999888877652     112379999999999988       69999999754222   223567899999999865443


Q ss_pred             ---CCcchhhhccccccccc
Q 020756          228 ---GDISELIKSVGSLKVAE  244 (321)
Q Consensus       228 ---~~~~~~~~~~~~~~~~~  244 (321)
                         +..++++..+.++.+|.
T Consensus       363 Ywtpe~~~~parvtL~evPs  382 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPS  382 (698)
T ss_pred             EEcccccCCcceEEEEecCc
Confidence               33456666666655544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.95  E-value=1.9e-08  Score=97.95  Aligned_cols=202  Identities=12%  Similarity=0.174  Sum_probs=149.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-C
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K   81 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~   81 (321)
                      |.+|||++-+   -..+...-.+..++..+.+|.  -+..||..++.|     +      -|+.+++.....-..+++ |
T Consensus       481 GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd-----R------lIHV~Dv~rny~l~qtld~H  546 (1080)
T KOG1408|consen  481 GNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD-----R------LIHVYDVKRNYDLVQTLDGH  546 (1080)
T ss_pred             CceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhhhhccCC-----c------eEEEEecccccchhhhhccc
Confidence            6899999998   466666777778888888874  355565544322     1      266777777665555555 7


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-----Cce----eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CRP----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-----~~~----~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      ...|+++.|.-.|-.+-.+.-..| +..+|+..     +..    ..++.......+...|.-+++++++   .|.+|.|
T Consensus       547 SssITsvKFa~~gln~~MiscGAD-ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDrniri  622 (1080)
T KOG1408|consen  547 SSSITSVKFACNGLNRKMISCGAD-KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDRNIRI  622 (1080)
T ss_pred             ccceeEEEEeecCCceEEEeccCc-hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---cccceEE
Confidence            899999999888744333322334 34455542     111    1223566788899999999999999   9999999


Q ss_pred             EECCCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCC
Q 020756          153 WDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       153 wD~~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~  224 (321)
                      ||+.+++.+..|++.     ...-+...|.|-||++..+      |.++.++|+ +|+++  ..+|-.-|..+.|.+|..
T Consensus       623 f~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  623 FDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK  696 (1080)
T ss_pred             EeccccceeeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence            999999999999874     4556889999999999997      999999998 78887  446777888899999988


Q ss_pred             CCCCCc
Q 020756          225 DKFGDI  230 (321)
Q Consensus       225 ~~~~~~  230 (321)
                      .+++..
T Consensus       697 HlISvs  702 (1080)
T KOG1408|consen  697 HLISVS  702 (1080)
T ss_pred             hheeec
Confidence            888653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.94  E-value=2.2e-09  Score=96.07  Aligned_cols=141  Identities=11%  Similarity=0.255  Sum_probs=94.8

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCC
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      |+....-..+||+|+|++.+...             .|..-+.+.  -..+++- .-+.|.-+.|+-|..++..+ .+.+
T Consensus         7 fk~~~~~c~fSp~g~yiAs~~~y-------------rlviRd~~t--lq~~qlf~cldki~yieW~ads~~ilC~-~yk~   70 (447)
T KOG4497|consen    7 FKSLNPFCSFSPCGNYIASLSRY-------------RLVIRDSET--LQLHQLFLCLDKIVYIEWKADSCHILCV-AYKD   70 (447)
T ss_pred             HHhcCCceeECCCCCeeeeeeee-------------EEEEeccch--hhHHHHHHHHHHhhheeeeccceeeeee-eecc
Confidence            44444456899999999997421             122111111  1111111 13556778999887755443 4667


Q ss_pred             CeEEEEeCCCceeE-Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee-eCCCeeeEEEccCCCEE
Q 020756          106 ASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECSVTSEWSPDGRYF  181 (321)
Q Consensus       106 ~~i~i~d~~~~~~~-~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~-~~~~~~~~~wSpdG~~l  181 (321)
                      +.+.+|++..-... .+  +..+...+.|||||+.|+..+  ..+-.|.+|.+.+.+..... ..+++-.++|.|||+|.
T Consensus        71 ~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~  148 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC  148 (447)
T ss_pred             ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence            89999999654433 33  678899999999999888866  36789999999877654432 22377789999999998


Q ss_pred             EEEE
Q 020756          182 MTAT  185 (321)
Q Consensus       182 ~t~~  185 (321)
                      +..+
T Consensus       149 ai~s  152 (447)
T KOG4497|consen  149 AILS  152 (447)
T ss_pred             eeee
Confidence            8776

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.93  E-value=1.2e-08  Score=90.20  Aligned_cols=145  Identities=17%  Similarity=0.197  Sum_probs=110.3

Q ss_pred             eeeecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCCCc-------ee----E-------EeCCcCeeeEEEcCCC
Q 020756           75 GLVPLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKKCR-------PI----L-------ELGSGPYNTVRWNPKG  135 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~~-------~~----~-------~~~~~~~~~~~~sPdG  135 (321)
                      +.+...|.|.|+.++..+. |++++.  |..|+.|.+||++..       .+    .       ..|.-.+.++.|-|..
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlS--Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLS--GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             cceeccCCCccceeeeccccceEEee--cCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence            4444568899999999985 656555  778999999998421       11    1       1144567889999977


Q ss_pred             CeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccC---CCEEEEEEcCCceeecCcEEEEeec-Ccee--EE
Q 020756          136 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPD---GRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FK  208 (321)
Q Consensus       136 ~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpd---G~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~  208 (321)
                      .=+++++  +.|.++++||.++.+....|.-+ .+..-+|||-   -.+||+++      .+-.|++.|+. |..-  ..
T Consensus       114 tGmFtss--SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt------r~~~VrLCDi~SGs~sH~Ls  185 (397)
T KOG4283|consen  114 TGMFTSS--SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT------RDVQVRLCDIASGSFSHTLS  185 (397)
T ss_pred             Cceeecc--cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec------CCCcEEEEeccCCcceeeec
Confidence            7666554  37899999999999888888776 7888899993   45666776      48899999994 5433  67


Q ss_pred             eccCceEEEEEecCCCCCCCC
Q 020756          209 KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       209 ~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +|.++|..+.|+|...+++..
T Consensus       186 GHr~~vlaV~Wsp~~e~vLat  206 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLAT  206 (397)
T ss_pred             cccCceEEEEeccCceeEEEe
Confidence            899999999999999888754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.93  E-value=3.4e-08  Score=94.70  Aligned_cols=146  Identities=17%  Similarity=0.273  Sum_probs=102.7

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecc-eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE-SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--  106 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~-~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~--  106 (321)
                      ......|+|+|..+.++....         +. ..+|+++++.+....+ +...+.-...+|||||+.++++... ++  
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~---------~~~~~i~~~~l~~g~~~~i-~~~~g~~~~P~fspDG~~l~f~~~r-dg~~  262 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFEL---------GGCPRIYYLDLNTGKRPVI-LNFNGNNGAPAFSPDGSKLAFSSSR-DGSP  262 (425)
T ss_pred             ceeccccCcCCCceEEEEEec---------CCCceEEEEeccCCcccee-eccCCccCCccCCCCCCEEEEEECC-CCCc
Confidence            455678999999999874321         22 3578888866633333 3456777789999999999998533 34  


Q ss_pred             eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE-EEeeeCCCeeeEEEccCCCEEEE
Q 020756          107 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAECSVTSEWSPDGRYFMT  183 (321)
Q Consensus       107 ~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~-i~~~~~~~~~~~~wSpdG~~l~t  183 (321)
                      .|.++|+.++.+..+  ..+.-....|||||+.|++.+-......|+++|++.... ..++....-....|||||++|+.
T Consensus       263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence            778889987766666  233334689999999999987544455888889876643 22233333337899999999999


Q ss_pred             EEc
Q 020756          184 ATT  186 (321)
Q Consensus       184 ~~s  186 (321)
                      .+.
T Consensus       343 ~~~  345 (425)
T COG0823         343 ESS  345 (425)
T ss_pred             Eec
Confidence            883

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=7.5e-08  Score=93.21  Aligned_cols=176  Identities=15%  Similarity=0.194  Sum_probs=126.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~   80 (321)
                      |.-|.|.-|++-+   .+++....-+....-.+.-+|.++.+++.+..          |  -|++++..-+ -+....+.
T Consensus        87 g~sg~i~EwDl~~---lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd----------G--vl~~~s~~p~~I~~~r~l~  151 (691)
T KOG2048|consen   87 GLSGSITEWDLHT---LKQKYNIDSNGGAIWSIAINPENTILAIGCDD----------G--VLYDFSIGPDKITYKRSLM  151 (691)
T ss_pred             cCCceEEEEeccc---CceeEEecCCCcceeEEEeCCccceEEeecCC----------c--eEEEEecCCceEEEEeecc
Confidence            6778999999998   67777777777778888889999888886421          2  2455444222 12222233


Q ss_pred             -CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeE--Ee---C-CcCeeeEEEcC---CCCeEEEEccCCCCCc
Q 020756           81 -KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL--EL---G-SGPYNTVRWNP---KGKFLCLAGFGNLPGD  149 (321)
Q Consensus        81 -~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~--~~---~-~~~~~~~~~sP---dG~~l~~~g~~n~~g~  149 (321)
                       .++.|.++.|+|++..++.  |+.|+.|.+||++. ..++  +.   . ...-.++.||=   ....|+++.   ..|.
T Consensus       152 rq~sRvLslsw~~~~~~i~~--Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgD---S~G~  226 (691)
T KOG2048|consen  152 RQKSRVLSLSWNPTGTKIAG--GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGD---SAGT  226 (691)
T ss_pred             cccceEEEEEecCCccEEEe--cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEec---CCce
Confidence             3589999999999998888  89999999999953 3333  21   1 11234555552   234667766   7899


Q ss_pred             EEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          150 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      |.|||...+.++..+..|  ++.+++-++++.++.+++      +|..+..|..++
T Consensus       227 V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG------vd~~ii~~~~~~  276 (691)
T KOG2048|consen  227 VTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG------VDPKIIQYSLTT  276 (691)
T ss_pred             EEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc------CCCceEEEEecC
Confidence            999999999999888876  889999999999999999      577766666543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.91  E-value=1.2e-08  Score=98.85  Aligned_cols=134  Identities=19%  Similarity=0.277  Sum_probs=100.9

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEeCCC-cee--EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKC-RPI--LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~---~~~~i~i~d~~~-~~~--~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      .|...|++++.||+|+.+|.+.-.   .-.-|.||+... ..+  ..+|.-.|..+.|||||++|++.+   .|.++.+|
T Consensus       523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs---RDRt~sl~  599 (764)
T KOG1063|consen  523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS---RDRTVSLY  599 (764)
T ss_pred             cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee---cCceEEee
Confidence            367789999999999999986432   224789999853 233  344888999999999999999999   99999999


Q ss_pred             ECCCCe----EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc---eeE----EeccCceEEEEEe
Q 020756          154 DYVDGK----QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS---LFF----KKMFDKLFQAEWK  220 (321)
Q Consensus       154 D~~~~~----~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~---~l~----~~~~~~~~~~~w~  220 (321)
                      ......    .....+.|  -|.+++|+||+.+|+|++      .|..|++|.....   .+.    ......|..++|.
T Consensus       600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             eeecccchhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence            875431    12234455  577899999999999999      5999999998433   221    1233478888888


Q ss_pred             cC
Q 020756          221 PV  222 (321)
Q Consensus       221 P~  222 (321)
                      |-
T Consensus       674 ~~  675 (764)
T KOG1063|consen  674 PV  675 (764)
T ss_pred             cc
Confidence            73

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.91  E-value=1e-08  Score=98.53  Aligned_cols=125  Identities=20%  Similarity=0.295  Sum_probs=94.7

Q ss_pred             EEEcCCCceeeeec--CCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCc-------eeEEe--CCcCeeeEEEcC
Q 020756           66 YLTTDGTHEGLVPL--RKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR-------PILEL--GSGPYNTVRWNP  133 (321)
Q Consensus        66 ~l~~~g~~~~~v~l--~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~-------~~~~~--~~~~~~~~~~sP  133 (321)
                      -++..|...+.+.+  .|.+.|.|+.|+|..+ .|+++  ..|..++||.+-..       +-..+  ++-.+.++.|+|
T Consensus        61 Pl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~--S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHp  138 (1012)
T KOG1445|consen   61 PLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATC--SRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHP  138 (1012)
T ss_pred             eccccCccccccceeecccceeeccCccccchhhhhcc--cCCCeeEEEecCCCcccccCCcceeecCCceEEEEeeccc
Confidence            33444444443332  3788999999999665 45554  67889999988421       11223  355678999999


Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ...-|+..+   ..|.++|||+.+++.+..+.+|  .+-+..||-||..|+++.      .|..|+|||-
T Consensus       139 TaDgil~s~---a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatsc------KdkqirifDP  199 (1012)
T KOG1445|consen  139 TADGILASG---AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSC------KDKQIRIFDP  199 (1012)
T ss_pred             CcCceEEec---cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeec------CCcceEEeCC
Confidence            887777777   7799999999999988888877  566799999999999997      5999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.91  E-value=1.2e-06  Score=80.52  Aligned_cols=193  Identities=13%  Similarity=0.237  Sum_probs=126.3

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      .+.+.+|++...  ...+............+.|+|++..++... .        .  ...+.+++............|..
T Consensus       133 d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~--------~--~~~~~~~~~~~~~~~~~~~~~~~  199 (466)
T COG2319         133 DGTVKLWDLSTP--GKLIRTLEGHSESVTSLAFSPDGKLLASGS-S--------L--DGTIKLWDLRTGKPLSTLAGHTD  199 (466)
T ss_pred             CccEEEEEecCC--CeEEEEEecCcccEEEEEECCCCCEEEecC-C--------C--CCceEEEEcCCCceEEeeccCCC
Confidence            668899998761  234444444455555799999999554431 0        0  11244555443222222223789


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeE-Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~-~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      .|.+++|+|++..+++. ...++.+.+||.... .+. .+  +.... ...|+|++.+++.++   .++.+.+||+....
T Consensus       200 ~v~~~~~~~~~~~~~~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~  274 (466)
T COG2319         200 PVSSLAFSPDGGLLIAS-GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS---SDGTIRLWDLRSSS  274 (466)
T ss_pred             ceEEEEEcCCcceEEEE-ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec---CCCcEEEeeecCCC
Confidence            99999999999833332 466888999988633 333 24  33333 338999998888777   88999999998665


Q ss_pred             E-EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EE--eccCceEEEEEec
Q 020756          160 Q-LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FK--KMFDKLFQAEWKP  221 (321)
Q Consensus       160 ~-i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~--~~~~~~~~~~w~P  221 (321)
                      . +..+..|  .+..+.|+|++..+++++.      |+.+.+|+......   ..  .+...+..+.| +
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  337 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSS------DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S  337 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeC------CCcEEEEEcCCCceEEEeeecccCCceEEEEE-C
Confidence            3 4443333  7788899999999999663      77799998865433   11  33345888888 5

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.91  E-value=6.6e-08  Score=85.44  Aligned_cols=175  Identities=14%  Similarity=0.299  Sum_probs=123.0

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-C-C
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R-K   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~-~   81 (321)
                      +-...||++.....+..-.|.-.+.-++.++.|...|..+.+.+..|         |...+|.+....- ..++-- . .
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaD---------GSvRmFDLR~leH-STIIYE~p~~  241 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGAD---------GSVRMFDLRSLEH-STIIYEDPSP  241 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCC---------CcEEEEEeccccc-ceEEecCCCC
Confidence            45678999998322334677777888999999999888887765433         5555665543222 222211 1 2


Q ss_pred             CCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCC--CceeEEe--CCcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEEC
Q 020756           82 EGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        82 ~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~  155 (321)
                      ..+...++|++..- ++|+. .-...+|.|.|++  +.++.++  |.+.||.++|.|+. ..|+++|   .|.+..+||+
T Consensus       242 ~~pLlRLswnkqDpnymATf-~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG---DD~qaliWDl  317 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATF-AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG---DDCQALIWDL  317 (364)
T ss_pred             CCcceeeccCcCCchHHhhh-hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC---CcceEEEEec
Confidence            56788899998544 66665 2223489999986  5677777  88999999999975 5888898   9999999999


Q ss_pred             CCCe------EEEee-eCCCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEE
Q 020756          156 VDGK------QLGTT-RAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       156 ~~~~------~i~~~-~~~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      .+.-      .+... ..+.+.++.|++ .+.+|+.+.       ++.+.|-
T Consensus       318 ~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-------~kkleiL  362 (364)
T KOG0290|consen  318 QQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-------GKKLEIL  362 (364)
T ss_pred             ccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-------cCeeeEE
Confidence            7542      12222 234899999997 588888888       6776654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=1.4e-07  Score=83.85  Aligned_cols=193  Identities=9%  Similarity=0.064  Sum_probs=117.7

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      +|++++|+++.   . .+..+--.+....+..|-++.+.+...             -+.++-.++++++.+.++ ..|.+
T Consensus        34 DgslrlYdv~~---~-~l~~~~~~~~plL~c~F~d~~~~~~G~-------------~dg~vr~~Dln~~~~~~i-gth~~   95 (323)
T KOG1036|consen   34 DGSLRLYDVPA---N-SLKLKFKHGAPLLDCAFADESTIVTGG-------------LDGQVRRYDLNTGNEDQI-GTHDE   95 (323)
T ss_pred             cCcEEEEeccc---h-hhhhheecCCceeeeeccCCceEEEec-------------cCceEEEEEecCCcceee-ccCCC
Confidence            47788888887   2 222222233444555555533322111             112345556666644333 36899


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--  159 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--  159 (321)
                      +|.++..++--..++.  |.-|.+|.+||.+.. ....+ ....|.++..+  |+.|++++   .+..|.+||+++..  
T Consensus        96 ~i~ci~~~~~~~~vIs--gsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~---~~r~v~iyDLRn~~~~  168 (323)
T KOG1036|consen   96 GIRCIEYSYEVGCVIS--GSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGT---SDRKVLIYDLRNLDEP  168 (323)
T ss_pred             ceEEEEeeccCCeEEE--cccCccEEEEeccccccccccccCceEEEEecc--CCEEEEee---cCceEEEEEcccccch
Confidence            9999999986655555  788999999998742 22233 12345555443  66677766   66677777776521  


Q ss_pred             -------------EE---------------------------------EeeeCC-----------CeeeEEEccCCCEEE
Q 020756          160 -------------QL---------------------------------GTTRAE-----------CSVTSEWSPDGRYFM  182 (321)
Q Consensus       160 -------------~i---------------------------------~~~~~~-----------~~~~~~wSpdG~~l~  182 (321)
                                   ++                                 ..|..|           .+..++|+|--.+|+
T Consensus       169 ~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa  248 (323)
T KOG1036|consen  169 FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA  248 (323)
T ss_pred             hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEE
Confidence                         11                                 112222           345589999999999


Q ss_pred             EEEcCCceeecCcEEEEeecCc-eeEEec--cCceEEEEEecCCCCCC
Q 020756          183 TATTAPRLQIDNGIKIFHHNGS-LFFKKM--FDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       183 t~~s~~rl~~d~~v~iw~~~g~-~l~~~~--~~~~~~~~w~P~~~~~~  227 (321)
                      |+++      |+-|-+||...+ .+...+  ...+..++++-++..+.
T Consensus       249 TgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  249 TGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA  290 (323)
T ss_pred             ecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence            9996      999999998543 333322  24588888887776554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.89  E-value=5.3e-07  Score=81.95  Aligned_cols=181  Identities=16%  Similarity=0.261  Sum_probs=118.0

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCcee-ecceeEEEEEcCCCceeee-ecCCCCC----------eEEEEECcCCCEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSY-YGESKLNYLTTDGTHEGLV-PLRKEGP----------VHDVQWSYSGSEFA   98 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~-~g~~~l~~l~~~g~~~~~v-~l~~~~~----------v~~~~wsP~g~~l~   98 (321)
                      .|.+..+++|++|++.          .| .|...++-+..+|.-...+ .+.|.++          +|...+.|++++++
T Consensus        91 p~yvsvd~~g~~vf~A----------nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~  160 (346)
T COG2706          91 PCYVSVDEDGRFVFVA----------NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV  160 (346)
T ss_pred             CeEEEECCCCCEEEEE----------EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE
Confidence            3667777777776653          12 2555566666666433322 2335555          99999999999999


Q ss_pred             EEEccCCCeEEEEeCCCceeEE-----e-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC----eEEEeee---
Q 020756           99 VVYGFMPASATIFNKKCRPILE-----L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTR---  165 (321)
Q Consensus        99 ~~~g~~~~~i~i~d~~~~~~~~-----~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~----~~i~~~~---  165 (321)
                      ++.-..| ++.+|++....+..     + ....-..+.|+|+|++..+..  .++++|.+|..+..    +.+..+.   
T Consensus       161 v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP  237 (346)
T COG2706         161 VPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLP  237 (346)
T ss_pred             EeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence            9854434 79999986322221     1 223345789999999998876  36799999998763    2333221   


Q ss_pred             C----C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---CceeEEeccC----ceEEEEEecCCCCCCCC
Q 020756          166 A----E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFKKMFD----KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       166 ~----~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~l~~~~~~----~~~~~~w~P~~~~~~~~  229 (321)
                      .    . ....+..||||+||.++.     |..+.|.+|.++   |.+-+.....    .-.+|.+.|....++..
T Consensus       238 ~dF~g~~~~aaIhis~dGrFLYasN-----Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGRFLYASN-----RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             cccCCCCceeEEEECCCCCEEEEec-----CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            1    1 456699999999998877     357788888883   3333332221    24678888887777654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.88  E-value=1.1e-07  Score=91.86  Aligned_cols=177  Identities=14%  Similarity=0.155  Sum_probs=122.4

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce---------
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---------   74 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~---------   74 (321)
                      +..|++|+.-... .-++....-++.-+.-+..-...+.+++...-           ...|++++++.+.+         
T Consensus        94 DtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGL-----------D~~IflWDin~~~~~l~~s~n~~  161 (735)
T KOG0308|consen   94 DTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGL-----------DRKIFLWDINTGTATLVASFNNV  161 (735)
T ss_pred             CceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCC-----------CccEEEEEccCcchhhhhhcccc
Confidence            5578888887631 13333333344444444442333344333211           11355555553311         


Q ss_pred             --eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756           75 --GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD  149 (321)
Q Consensus        75 --~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~  149 (321)
                        ......+..+|++++-++.|.  .++.|+..+.+++||-+. +.+..+  |...|..+..++||+.+++++   .||+
T Consensus       162 t~~sl~sG~k~siYSLA~N~t~t--~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgt  236 (735)
T KOG0308|consen  162 TVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGT  236 (735)
T ss_pred             ccccCCCCCccceeeeecCCcce--EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC---CCce
Confidence              111124678999999999994  333477778999999864 455555  889999999999999999999   9999


Q ss_pred             EEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          150 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      |++||+...+|+.++..|  .+..+.-+|+-.++.+|+.      |+.|..-|+..
T Consensus       237 IrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r------d~~i~~Tdl~n  286 (735)
T KOG0308|consen  237 IRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR------DGNIYRTDLRN  286 (735)
T ss_pred             EEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC------CCcEEecccCC
Confidence            999999999999998877  5777777899999999994      88888877743

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.88  E-value=7.9e-07  Score=84.10  Aligned_cols=176  Identities=16%  Similarity=0.254  Sum_probs=114.7

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~~   82 (321)
                      .++|.|.+..+   .+.+........-...+.++|||+++++.. .    .     |  .+..++..... ...+.  -.
T Consensus        15 ~~~v~viD~~t---~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r----d-----g--~vsviD~~~~~~v~~i~--~G   77 (369)
T PF02239_consen   15 SGSVAVIDGAT---NKVVARIPTGGAPHAGLKFSPDGRYLYVAN-R----D-----G--TVSVIDLATGKVVATIK--VG   77 (369)
T ss_dssp             GTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEE-T----T-----S--EEEEEETTSSSEEEEEE---S
T ss_pred             CCEEEEEECCC---CeEEEEEcCCCCceeEEEecCCCCEEEEEc-C----C-----C--eEEEEECCcccEEEEEe--cC
Confidence            47889999888   677877766544456788999999988852 1    1     2  36777775542 23333  34


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC---------CcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~---------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      ....++++|+||+++++. ...++.+.++|.+ .+++..+.         ...+..+.-+|....++++-.  ..+.|.+
T Consensus        78 ~~~~~i~~s~DG~~~~v~-n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk--d~~~I~v  154 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVA-NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK--DTGEIWV  154 (369)
T ss_dssp             SEEEEEEE--TTTEEEEE-EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET--TTTEEEE
T ss_pred             CCcceEEEcCCCCEEEEE-ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc--cCCeEEE
Confidence            567889999999999876 4568899999985 45666551         234567888999886666541  3489999


Q ss_pred             EECCCCe--EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          153 WDYVDGK--QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       153 wD~~~~~--~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      .|..+.+  .+..+.. .......|+|||+|++.+..     ..+.+-++|....
T Consensus       155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~~~~  204 (369)
T PF02239_consen  155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDTKTG  204 (369)
T ss_dssp             EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEETTTT
T ss_pred             EEeccccccceeeecccccccccccCcccceeeeccc-----ccceeEEEeeccc
Confidence            9987653  2334433 36778999999999988875     4788889998543

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.86  E-value=3.7e-08  Score=87.93  Aligned_cols=137  Identities=17%  Similarity=0.252  Sum_probs=106.5

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      .++|++-+|++|+..+|++  .....+.||...+.    ..+++  |...++.+.|+|.++.|++++   .|.+-++|..
T Consensus        10 ~~pitchAwn~drt~iAv~--~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs---~drnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVS--PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS---HDRNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCCceEEec--cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc---CCCCcccccc
Confidence            4799999999999999995  55668999987543    44555  788999999999999999999   8889999988


Q ss_pred             -CCC--eEEEee-eCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce-------eEEeccCceEEEEEecCC
Q 020756          156 -VDG--KQLGTT-RAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-------FFKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       156 -~~~--~~i~~~-~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~-------l~~~~~~~~~~~~w~P~~  223 (321)
                       ..+  +..-.+ ... ..+++.|||.+..||+++.      -..+.||-|.++.       +.+-..+.|..+.|+|.+
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg------ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG------ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccC------ccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence             433  222222 222 7888999999999999995      6778899887653       233345678999999987


Q ss_pred             CCCCCC
Q 020756          224 PDKFGD  229 (321)
Q Consensus       224 ~~~~~~  229 (321)
                      ..+...
T Consensus       159 VLlaaG  164 (361)
T KOG1523|consen  159 VLLAAG  164 (361)
T ss_pred             ceeccc
Confidence            655543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.84  E-value=1.7e-07  Score=91.09  Aligned_cols=189  Identities=12%  Similarity=0.136  Sum_probs=134.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |++..+.||...+   ..|+....-++..+|.+.=.-+++ + +..+  -|+|-+       +|.   .+. -......|
T Consensus        78 ~~D~~i~v~~~~~---~~P~~~LkgH~snVC~ls~~~~~~-~-iSgS--WD~Tak-------vW~---~~~-l~~~l~gH  139 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQ---AEPLYTLKGHKSNVCSLSIGEDGT-L-ISGS--WDSTAK-------VWR---IGE-LVYSLQGH  139 (745)
T ss_pred             cccceEEEEecCC---CCchhhhhccccceeeeecCCcCc-e-Eecc--cccceE-------Eec---chh-hhcccCCc
Confidence            5678888999988   788888888888888888777776 2 3211  233222       232   222 11112358


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..+|-.+..-|.+ .+++  |+.|.+|++|.- +..+.+|  |..-|..+++-|++.+ ++++   .||.|++||+ +++
T Consensus       140 ~asVWAv~~l~e~-~~vT--gsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~f-lScs---NDg~Ir~w~~-~ge  210 (745)
T KOG0301|consen  140 TASVWAVASLPEN-TYVT--GSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHF-LSCS---NDGSIRLWDL-DGE  210 (745)
T ss_pred             chheeeeeecCCC-cEEe--ccCcceeeeccC-CchhhhhccchhheeeeEEecCCCe-Eeec---CCceEEEEec-cCc
Confidence            8999999999988 4444  688999999987 3344445  8888999999987654 6666   8999999999 788


Q ss_pred             EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecCCC
Q 020756          160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVSP  224 (321)
Q Consensus       160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~~~  224 (321)
                      ++....+|  .+++++..+++..|++++      .|++++||+.. +++...  ....+|++..=+.+.
T Consensus       211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~g------EDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD  272 (745)
T KOG0301|consen  211 VLLEMHGHTNFVYSISMALSDGLIVSTG------EDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD  272 (745)
T ss_pred             eeeeeeccceEEEEEEecCCCCeEEEec------CCceEEEeecC-ceEEEEecCccceEEEEEeeCCC
Confidence            88887777  577788888899999999      59999999975 444222  223566665554443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.84  E-value=7.7e-07  Score=93.09  Aligned_cols=136  Identities=15%  Similarity=0.311  Sum_probs=92.3

Q ss_pred             CeEEEEECcCCCEEEEEEc--cCC--CeEEEEeCCCceeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           84 PVHDVQWSYSGSEFAVVYG--FMP--ASATIFNKKCRPILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g--~~~--~~i~i~d~~~~~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      .-..++|-.||.+||+.+-  ...  +.++||+..|....+-.  .+--..++|.|.|++|+.+-.......|-||.. +
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-N  289 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-N  289 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-C
Confidence            4457999999999999753  222  58999999875333321  333457999999999999874334568888876 4


Q ss_pred             CeEEEeeeC------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEecc---CceEEEEEecCCCC
Q 020756          158 GKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMF---DKLFQAEWKPVSPD  225 (321)
Q Consensus       158 ~~~i~~~~~------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~---~~~~~~~w~P~~~~  225 (321)
                      |-.-..|.-      ..+..+.|++|+..||...       .+.|+||......-   ....+   ..+..+.|+|..+.
T Consensus       290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-------~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-------EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-------cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence            433222221      2678899999999999977       55599998765432   22222   23444899997665


Q ss_pred             CC
Q 020756          226 KF  227 (321)
Q Consensus       226 ~~  227 (321)
                      .+
T Consensus       363 ~L  364 (928)
T PF04762_consen  363 RL  364 (928)
T ss_pred             EE
Confidence            33

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.83  E-value=5.6e-08  Score=90.38  Aligned_cols=189  Identities=10%  Similarity=0.058  Sum_probs=128.0

Q ss_pred             eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC------CCceeeee-cCCCCCeEEEEECcCC
Q 020756           22 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD------GTHEGLVP-LRKEGPVHDVQWSYSG   94 (321)
Q Consensus        22 ~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~------g~~~~~v~-l~~~~~v~~~~wsP~g   94 (321)
                      ....-++-..+.+..+|++.+++-...+..-.....+.|...-|.+..+      +.. .... -.|...+.+++.||||
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~-~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP-LKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCC-CCcccccccceeEEEEEcCCC
Confidence            3333455667788888888877654321100000011122111333321      110 0111 1466788999999999


Q ss_pred             CEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--Ce
Q 020756           95 SEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS  169 (321)
Q Consensus        95 ~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~  169 (321)
                      ++|++  |..+..+.||+.+ .+++..|  |.+.|.+++|--.-..|.+++   .|..|.+|+++....+.++-+|  .+
T Consensus       215 kylat--gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s---~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  215 KYLAT--GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS---ADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             cEEEe--cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee---cCCceEEEehhHhHHHHHHhCCccce
Confidence            99999  6788899999984 5677776  789999999998888888888   8999999999988877777776  57


Q ss_pred             eeEEEccCCCEEEEEEcCCceeecCcEEEEeec--CceeEEeccCceEEEEEecC
Q 020756          170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMFDKLFQAEWKPV  222 (321)
Q Consensus       170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l~~~~~~~~~~~~w~P~  222 (321)
                      ..+.-..-++.+-++.      .|.+++||++.  .++++..+.+.+-.+++--+
T Consensus       290 ~~IdaL~reR~vtVGg------rDrT~rlwKi~eesqlifrg~~~sidcv~~In~  338 (479)
T KOG0299|consen  290 LGIDALSRERCVTVGG------RDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND  338 (479)
T ss_pred             eeechhcccceEEecc------ccceeEEEeccccceeeeeCCCCCeeeEEEecc
Confidence            7777777777665565      49999999993  45667777666666655443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.81  E-value=3.3e-07  Score=85.30  Aligned_cols=201  Identities=13%  Similarity=0.180  Sum_probs=131.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |....|.||+..+   .+++....-+...+..+.|-..-..| +.++.|         ....+|.++...-  ......|
T Consensus       221 g~d~~v~Iw~~~t---~ehv~~~~ghr~~V~~L~fr~gt~~l-ys~s~D---------rsvkvw~~~~~s~--vetlyGH  285 (479)
T KOG0299|consen  221 GRDRHVQIWDCDT---LEHVKVFKGHRGAVSSLAFRKGTSEL-YSASAD---------RSVKVWSIDQLSY--VETLYGH  285 (479)
T ss_pred             CCCceEEEecCcc---cchhhcccccccceeeeeeecCccce-eeeecC---------CceEEEehhHhHH--HHHHhCC
Confidence            4556777888888   56665545455555555554332333 222221         1222333332221  1112347


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      .+.|.++.-.--++.+.  .|..|+++.+|++.  ...++.-+.+.+.|++|-.+ ..+++++   .+|.|.+|++.+.+
T Consensus       286 qd~v~~IdaL~reR~vt--VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGS---dnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVT--VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGS---DNGSIALWSLLKKK  359 (479)
T ss_pred             ccceeeechhcccceEE--eccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeecc---CCceEEEeeecccC
Confidence            77887776665554333  37789999999994  34455557778889988854 5667877   89999999998887


Q ss_pred             EEEeeeC-C-------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-----eeEEecc-CceEEEEE
Q 020756          160 QLGTTRA-E-------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-----LFFKKMF-DKLFQAEW  219 (321)
Q Consensus       160 ~i~~~~~-~-------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-----~l~~~~~-~~~~~~~w  219 (321)
                      .+.+... |             .++.++..|...++++++.      +++|+||-+...     +++.... .-|..+.|
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f  433 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAF  433 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCC------CCceEEEEecCCccccceeeecccccEEEEEEE
Confidence            7655431 1             4677888999999999985      999999999533     3344443 46888999


Q ss_pred             ecCCCCCCCC
Q 020756          220 KPVSPDKFGD  229 (321)
Q Consensus       220 ~P~~~~~~~~  229 (321)
                      ++++..++..
T Consensus       434 ~~sgk~ivag  443 (479)
T KOG0299|consen  434 SNSGKRIVAG  443 (479)
T ss_pred             ccCCCEEEEe
Confidence            9999877754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.80  E-value=2.7e-07  Score=89.70  Aligned_cols=163  Identities=10%  Similarity=0.106  Sum_probs=114.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..++||.+..     ......-+.+.+..+..-|++.++-..    .|+         .|+++.. +. ..+....|.+-
T Consensus       122 ~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~~~vTgs----aDK---------tIklWk~-~~-~l~tf~gHtD~  181 (745)
T KOG0301|consen  122 STAKVWRIGE-----LVYSLQGHTASVWAVASLPENTYVTGS----ADK---------TIKLWKG-GT-LLKTFSGHTDC  181 (745)
T ss_pred             cceEEecchh-----hhcccCCcchheeeeeecCCCcEEecc----Ccc---------eeeeccC-Cc-hhhhhccchhh
Confidence            4577777754     223344445555555555666333221    122         2344322 22 22333358999


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      |..++.-|++. |+.|  ..|+.|++|++.++.+.+.  |...+.++...++++.|+++|   .|++++||+..  ++.+
T Consensus       182 VRgL~vl~~~~-flSc--sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g---EDrtlriW~~~--e~~q  253 (745)
T KOG0301|consen  182 VRGLAVLDDSH-FLSC--SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTG---EDRTLRIWKKD--ECVQ  253 (745)
T ss_pred             eeeeEEecCCC-eEee--cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEec---CCceEEEeecC--ceEE
Confidence            99999998765 5555  6689999999999988887  678899999999999999999   99999999986  6777


Q ss_pred             eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          163 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       163 ~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .+..+  ++.++..-++|. |++++|      |+.|+||..+
T Consensus       254 ~I~lPttsiWsa~~L~NgD-Ivvg~S------DG~VrVfT~~  288 (745)
T KOG0301|consen  254 VITLPTTSIWSAKVLLNGD-IVVGGS------DGRVRVFTVD  288 (745)
T ss_pred             EEecCccceEEEEEeeCCC-EEEecc------CceEEEEEec
Confidence            77665  666777778888 566665      9999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.80  E-value=1.9e-07  Score=83.51  Aligned_cols=181  Identities=12%  Similarity=0.161  Sum_probs=125.9

Q ss_pred             ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 020756           20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV   99 (321)
Q Consensus        20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~   99 (321)
                      |+...+-+.+.+.-..|-..|+-++..          ++.-.-+||.+  ..+....+.-.|+...+.+.-+|..+.+++
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTa----------SWDRTAnlwDV--Etge~v~~LtGHd~ELtHcstHptQrLVvT  331 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTA----------SWDRTANLWDV--ETGEVVNILTGHDSELTHCSTHPTQRLVVT  331 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeee----------eccccceeeee--ccCceeccccCcchhccccccCCcceEEEE
Confidence            444455555566666677777766542          22223344443  333122333357778888888998876666


Q ss_pred             EEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC-CeeeEE
Q 020756          100 VYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-CSVTSE  173 (321)
Q Consensus       100 ~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~-~~~~~~  173 (321)
                        ...|.+.++||.+-  ..+..|  |...+.++.|+-|. .+++++   .|.+|++||+++. ..+.++... .+..++
T Consensus       332 --sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS---DDrTvKvWdLrNMRsplATIRtdS~~NRva  405 (481)
T KOG0300|consen  332 --SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS---DDRTVKVWDLRNMRSPLATIRTDSPANRVA  405 (481)
T ss_pred             --eccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecC---CCceEEEeeeccccCcceeeecCCccceeE
Confidence              46788999999962  122333  78889999999765 456666   8899999999987 466666654 677889


Q ss_pred             EccCCCEEEEEEcCCceeecCcEEEEeecCcee-------EEeccCceEEEEEecCCC
Q 020756          174 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-------FKKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------~~~~~~~~~~~~w~P~~~  224 (321)
                      .|-.+..|+....      +..++|||++|..+       ..+|...|+..+|.-+++
T Consensus       406 vs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  406 VSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             eecCCceEEeccC------CceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence            9998888888872      55799999999876       335667899999987665

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1.1e-06  Score=78.41  Aligned_cols=215  Identities=15%  Similarity=0.234  Sum_probs=132.6

Q ss_pred             CCceEEEEEcCCcCC-CCceeeeecccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--eee
Q 020756            3 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLV   77 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~-~~~i~~~~~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~v   77 (321)
                      ..+.|+||+....+. =...+.-..+.+....+.|-+  -|+.++.++   .|++-..|. |+. -..+..|..-  +..
T Consensus        33 sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Drtv~iWE-E~~-~~~~~~~~~Wv~~tt  107 (361)
T KOG2445|consen   33 SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDRTVSIWE-EQE-KSEEAHGRRWVRRTT  107 (361)
T ss_pred             CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCCceeeee-ecc-cccccccceeEEEEE
Confidence            467899999855210 113334445677888999975  388877763   455444332 211 0111111111  112


Q ss_pred             ecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeCC-------CceeEEe---------CCcCeeeEEEcCC---CC
Q 020756           78 PLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKK-------CRPILEL---------GSGPYNTVRWNPK---GK  136 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~-------~~~~~~~---------~~~~~~~~~~sPd---G~  136 (321)
                      ..+....|+|+.|.|.  |-.++.+  +.||.++||+.-       ....+++         +..+..|+.|+|.   ..
T Consensus       108 l~DsrssV~DV~FaP~hlGLklA~~--~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p  185 (361)
T KOG2445|consen  108 LVDSRSSVTDVKFAPKHLGLKLAAA--SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEP  185 (361)
T ss_pred             eecCCcceeEEEecchhcceEEEEe--ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCc
Confidence            2356789999999995  5456665  668999999762       1111222         3567889999983   45


Q ss_pred             eEEEEccCC--CCCcEEEEECCCC----eEEEeeeCC--CeeeEEEccC-C---CEEEEEEcCCceeecCcEEEEeecCc
Q 020756          137 FLCLAGFGN--LPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD-G---RYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       137 ~l~~~g~~n--~~g~i~iwD~~~~----~~i~~~~~~--~~~~~~wSpd-G---~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      +|+++.-..  .-+.++||.....    ..+.++..+  .|++++|.|+ |   ..||+++      .|+ |+||++.+.
T Consensus       186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~------kDg-v~I~~v~~~  258 (361)
T KOG2445|consen  186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT------KDG-VRIFKVKVA  258 (361)
T ss_pred             eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee------cCc-EEEEEEeec
Confidence            777775210  1257888875533    345555554  7889999996 4   4567777      355 999998631


Q ss_pred             ---------------------ee--EEeccCceEEEEEecCCCCCCCCcc
Q 020756          205 ---------------------LF--FKKMFDKLFQAEWKPVSPDKFGDIS  231 (321)
Q Consensus       205 ---------------------~l--~~~~~~~~~~~~w~P~~~~~~~~~~  231 (321)
                                           .+  +..|..+++.+.|+-.+..+.+..+
T Consensus       259 ~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  259 RSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             cchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence                                 11  3346779999999988877776643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.78  E-value=1.9e-07  Score=91.14  Aligned_cols=174  Identities=13%  Similarity=0.218  Sum_probs=125.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCC--CeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec--
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS--TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--   79 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G--~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l--   79 (321)
                      .--|.||++...  -..+.+..-+...+..++|-..|  ..++.+ .  .|   ++.+     |..........+.+.  
T Consensus       525 dRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~Misc-G--AD---ksim-----Fr~~qk~~~g~~f~r~t  591 (1080)
T KOG1408|consen  525 DRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRKMISC-G--AD---KSIM-----FRVNQKASSGRLFPRHT  591 (1080)
T ss_pred             CceEEEEecccc--cchhhhhcccccceeEEEEeecCCceEEEec-c--Cc---hhhh-----eehhccccCceeccccc
Confidence            445778888751  23455555566777788887766  333332 1  11   2211     111111111111111  


Q ss_pred             --CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           80 --RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        80 --~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                        -.+..++|++..|+.++++++  +.|..|+|||+ .++++..|     +++..--+...|.|.||+++.   .|.++.
T Consensus       592 ~t~~ktTlYDm~Vdp~~k~v~t~--cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc---sdktl~  666 (1080)
T KOG1408|consen  592 QTLSKTTLYDMAVDPTSKLVVTV--CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC---SDKTLC  666 (1080)
T ss_pred             cccccceEEEeeeCCCcceEEEE--ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee---cCCceE
Confidence              135789999999999999885  77899999999 46777777     345666788999999999998   889999


Q ss_pred             EEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          152 FWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      |+|.-+++++....+|  .++.+.|++|=++|++++.      |++|.||.+
T Consensus       667 ~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg------DgCIFvW~l  712 (1080)
T KOG1408|consen  667 FVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG------DGCIFVWKL  712 (1080)
T ss_pred             EEEeccchhhhhhcCcchheeeeeecccchhheeecC------CceEEEEEC
Confidence            9999999999998887  6888999999999999995      999999998

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.78  E-value=1.3e-07  Score=82.61  Aligned_cols=110  Identities=18%  Similarity=0.257  Sum_probs=89.2

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----e---eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----P---ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~---~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      |+++|.++.+.+.-..=+.  |..+..+..|++.-.    +   ..++.+-.++.++.-||++.++++|   .|+.|+||
T Consensus       204 h~qpvlsldyas~~~rGis--gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVy  278 (323)
T KOG0322|consen  204 HKQPVLSLDYASSCDRGIS--GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVY  278 (323)
T ss_pred             ccCcceeeeechhhcCCcC--CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc---cCCcEEEE
Confidence            7899999999864333222  455557888887321    2   2334567789999999999999999   99999999


Q ss_pred             ECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          154 DYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       154 D~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ..+++..+..++.|  .+.+++||||-..+|.++      .|..|-+|++
T Consensus       279 swrtl~pLAVLkyHsagvn~vAfspd~~lmAaas------kD~rISLWkL  322 (323)
T KOG0322|consen  279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS------KDARISLWKL  322 (323)
T ss_pred             EeccCCchhhhhhhhcceeEEEeCCCCchhhhcc------CCceEEeeec
Confidence            99999998888877  788999999999999999      5999999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=2.6e-07  Score=91.85  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=90.7

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe-CC----CceeE--EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN-KK----CRPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d-~~----~~~~~--~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      +.|.-.+.++++||+++++++  +.++|+|.+|. ..    ....+  ..|...++++.||+||.+|+++|   ..+-+-
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa--~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv  276 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAA--GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLV  276 (792)
T ss_pred             hhhcccceeEEeccccceEEE--eccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc---cceEEE
Confidence            446666899999999999998  68899999994 32    12233  34788999999999999999999   999999


Q ss_pred             EEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          152 FWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       152 iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +|.+.++++.....- ..+..+.||||+.+.++..      .||.|.+-..
T Consensus       277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~------~DNqI~li~~  321 (792)
T KOG1963|consen  277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL------EDNQIHLIKA  321 (792)
T ss_pred             EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe------cCceEEEEec
Confidence            999998873332222 3788999999999999988      4999999775

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.75  E-value=3.6e-07  Score=85.09  Aligned_cols=175  Identities=15%  Similarity=0.196  Sum_probs=124.9

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--eeeecCCCC
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLRKEG   83 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~v~l~~~~   83 (321)
                      ...||++...  +.+.-.....+--++.+..||...++++.++.|         +...||.+..-+...  -...+.|..
T Consensus       302 ~f~~iD~R~~--~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D---------~T~kIWD~R~l~~K~sp~lst~~Hrr  370 (498)
T KOG4328|consen  302 NFNVIDLRTD--GSEYENLRLHKKKITSVALNPVCPWFLATASLD---------QTAKIWDLRQLRGKASPFLSTLPHRR  370 (498)
T ss_pred             ceEEEEeecC--CccchhhhhhhcccceeecCCCCchheeecccC---------cceeeeehhhhcCCCCcceecccccc
Confidence            5567888874  556667777777889999999999998876543         222355554333322  245677999


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCC-----CceeEEe-CCcC------eeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CRPILEL-GSGP------YNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-----~~~~~~~-~~~~------~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      +|+++.|||+|-.|++.  +.|..|.|||..     ..+..++ |...      .--..|.|+-.+|+++-   .-..|.
T Consensus       371 sV~sAyFSPs~gtl~TT--~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~---~~r~ID  445 (498)
T KOG4328|consen  371 SVNSAYFSPSGGTLLTT--CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR---YPRPID  445 (498)
T ss_pred             eeeeeEEcCCCCceEee--ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec---cCccee
Confidence            99999999988776663  668899999984     2344444 3221      12358999999999987   767899


Q ss_pred             EEECCCCeEEEeeeCCCee----eEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          152 FWDYVDGKQLGTTRAECSV----TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~~~~----~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      |+|-+.++.+..+..+..+    ..+|+|-+..+++|++     ..+.++||.-
T Consensus       446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~-----s~Gki~vft~  494 (498)
T KOG4328|consen  446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN-----SSGKIYVFTN  494 (498)
T ss_pred             EEcCCCCEEeeeccCccccccccceeecccccceeccCC-----ccceEEEEec
Confidence            9999988888887666332    3689999997888875     2566666653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.74  E-value=1.3e-06  Score=78.26  Aligned_cols=203  Identities=19%  Similarity=0.199  Sum_probs=131.0

Q ss_pred             EEEEEcCCcCCCCceeeeecccCc--cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            7 VQIYACGKDLQSQPLARRSFFRCS--TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         7 v~v~~~~~~~~~~~i~~~~~f~~~--~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      .|||++.-   -++..++.+...+  .+.|.+  .-++|+++-     ..+...|-...|..|+ +-......++.-..+
T Consensus        28 friyn~~P---~ke~~~r~~~~~G~~~veMLf--R~N~laLVG-----Gg~~pky~pNkviIWD-D~k~~~i~el~f~~~   96 (346)
T KOG2111|consen   28 FRIYNCDP---FKESASRQFIDGGFKIVEMLF--RSNYLALVG-----GGSRPKYPPNKVIIWD-DLKERCIIELSFNSE   96 (346)
T ss_pred             eEEEecCc---hhhhhhhccccCchhhhhHhh--hhceEEEec-----CCCCCCCCCceEEEEe-cccCcEEEEEEeccc
Confidence            46666654   2344444444333  222322  224555542     2233456666777776 333356677777899


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      |.++..+++  +++++   .+.+|.+|....+  .++.+.  ..|-.-++..|.-..-+++-.|..-|.|.|.|+...+.
T Consensus        97 I~~V~l~r~--riVvv---l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~  171 (346)
T KOG2111|consen   97 IKAVKLRRD--RIVVV---LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP  171 (346)
T ss_pred             eeeEEEcCC--eEEEE---ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence            999999976  46654   2568999988543  455552  23444566666554333333344569999999976544


Q ss_pred             --EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEecc----CceEEEEEecCCCCCCCCc
Q 020756          161 --LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF----DKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       161 --i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~----~~~~~~~w~P~~~~~~~~~  230 (321)
                        -..+.+|  .+.+++.+-+|..+||+++     ...-|+|||. +|.++.+...    ..+|.++|+|+...+....
T Consensus       172 ~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-----kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  172 NAPSIINAHDSDIACVALNLQGTLVATAST-----KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             CCceEEEcccCceeEEEEcCCccEEEEecc-----CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence              2445555  7999999999999999996     2444999997 7888866544    4899999999998887553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.73  E-value=1.3e-06  Score=83.65  Aligned_cols=113  Identities=15%  Similarity=0.163  Sum_probs=92.9

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      -.|.+.|..+.|+.+-..|..+  ..+..+..|+.+...+...   ....+.++.++|||..|++++     ++|.+||+
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~--~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~  171 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSV--GADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDI  171 (541)
T ss_pred             CCCCCcceeeecccccCceEec--CCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEc
Confidence            3488999999999988877775  5578999999976655544   566788999999999999988     89999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccC-----CCEEEEEEcCCceeecCcEEEEeecC
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPD-----GRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpd-----G~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ++++.+.+|++|  .+.++.|--+     |.|++++..     .+..+.+|-+.+
T Consensus       172 ~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~~  221 (541)
T KOG4547|consen  172 ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVEK  221 (541)
T ss_pred             cCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEEc
Confidence            999999999998  6777777766     899988775     466778887643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.71  E-value=3.6e-07  Score=82.04  Aligned_cols=149  Identities=16%  Similarity=0.254  Sum_probs=111.3

Q ss_pred             cCCCCCeEEEEECcC---CC--EEEEEEccCCCeEEEEeCCCc----eeEEe----CCcCeeeEEEcCCCC----eEEEE
Q 020756           79 LRKEGPVHDVQWSYS---GS--EFAVVYGFMPASATIFNKKCR----PILEL----GSGPYNTVRWNPKGK----FLCLA  141 (321)
Q Consensus        79 l~~~~~v~~~~wsP~---g~--~l~~~~g~~~~~i~i~d~~~~----~~~~~----~~~~~~~~~~sPdG~----~l~~~  141 (321)
                      -+|..+|.+++|++-   +.  .|+++ |  ..+++||...+.    .++..    +.....+++|+-|-.    +|+++
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatv-G--~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATV-G--GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEe-C--CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            357788999999852   22  33443 3  348999976433    23333    455678899987533    78888


Q ss_pred             ccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecCce-e-----EEeccC
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSL-F-----FKKMFD  212 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~~-l-----~~~~~~  212 (321)
                      |   ..|-|+|.|+.++++...+.+|  .+..+.+.|+ -+++++++      .|..++||+++... +     +.+|.+
T Consensus       112 G---~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S------kD~svRlwnI~~~~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  112 G---YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS------KDHSVRLWNIQTDVCVAVFGGVEGHRD  182 (385)
T ss_pred             c---ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec------CCceEEEEeccCCeEEEEecccccccC
Confidence            8   8899999999999988888776  7889999997 46777777      49999999996553 3     557899


Q ss_pred             ceEEEEEecCCCCCCCCc-chhhhcccc
Q 020756          213 KLFQAEWKPVSPDKFGDI-SELIKSVGS  239 (321)
Q Consensus       213 ~~~~~~w~P~~~~~~~~~-~~~~~~~~~  239 (321)
                      +|.++.|++++..+++-. |...+.|.+
T Consensus       183 eVLSvD~~~~gd~i~ScGmDhslk~W~l  210 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMDHSLKLWRL  210 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCcceEEEEec
Confidence            999999999999888774 655566644

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=7.9e-07  Score=80.17  Aligned_cols=177  Identities=15%  Similarity=0.168  Sum_probs=120.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~-   82 (321)
                      +.|+||+..+   ++.+...+..+.-.-.+.+..+ +-..+..+++|         |...+|.+...+...++..-.+. 
T Consensus        50 gsv~lyd~~t---g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD---------G~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   50 GSVRLYDKGT---GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD---------GTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             CeEEEEeccc---hhhhheecCCCCcccceEEecCCCCCeeEEeccC---------CeEEEEEeecchhhhheeccCCCC
Confidence            6899999988   6777777777766677787663 44444544444         67777877776653333222222 


Q ss_pred             CCeEEEEECcCCCEEEEEE--ccCCCeEEEEeCCCc--eeEEe---CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEE
Q 020756           83 GPVHDVQWSYSGSEFAVVY--GFMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~--g~~~~~i~i~d~~~~--~~~~~---~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD  154 (321)
                      .+-.+++-+..++.|+.-.  -..++.+.+||++..  ++..+   |...|.++.|+|..- +|++++   .||-|.|||
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS---vDGLvnlfD  194 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS---VDGLVNLFD  194 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec---ccceEEeee
Confidence            3566677776777777621  123568999999654  24444   889999999999765 555565   899999999


Q ss_pred             CCCC----eEEEeeeCC-CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEeec
Q 020756          155 YVDG----KQLGTTRAE-CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       155 ~~~~----~~i~~~~~~-~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++.-    .++.++... .|..+.|..++ +.|.+-+.      ..++.+|++.
T Consensus       195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH------~Etf~~~ele  242 (376)
T KOG1188|consen  195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH------METFAIYELE  242 (376)
T ss_pred             cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc------cCceeEEEcc
Confidence            9744    234445443 58889999998 23666663      8999999984

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.68  E-value=6.3e-07  Score=80.36  Aligned_cols=168  Identities=16%  Similarity=0.214  Sum_probs=110.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecc------cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFF------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG   75 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f------~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~   75 (321)
                      |.-..||||++..-+ +.+-..-+++      +.-...+.+||-...++.+         .+|.-...||..  +++...
T Consensus       176 GykrcirvFdt~RpG-r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~---------gsY~q~~giy~~--~~~~pl  243 (406)
T KOG2919|consen  176 GYKRCIRVFDTSRPG-RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV---------GSYGQRVGIYND--DGRRPL  243 (406)
T ss_pred             cccceEEEeeccCCC-CCCcchhhhhcccccccceeeeeeccCCCCcceee---------ecccceeeeEec--CCCCce
Confidence            455689999995421 1111111122      3445577888866644443         133333345543  333344


Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe--C---CcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~---~~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      .+.-.|++.|+.++|.++|+.|.+- ...+.+|..||++.  .++..+  |   +..+--+...|+|++|+.++   .+|
T Consensus       244 ~llggh~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~---tdG  319 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD---TDG  319 (406)
T ss_pred             eeecccCCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC---CCc
Confidence            5555799999999999999999884 23456899999964  345444  2   34555677789999999998   899


Q ss_pred             cEEEEECCC-CeEEEeeeCC--CeeeEEEccCCCEEEEEE
Q 020756          149 DMAFWDYVD-GKQLGTTRAE--CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       149 ~i~iwD~~~-~~~i~~~~~~--~~~~~~wSpdG~~l~t~~  185 (321)
                      .|.+||+++ +..+..+..+  ++..++++|-=..++|++
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             cEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence            999999987 5545555443  677789999866666666

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=8.2e-07  Score=79.13  Aligned_cols=113  Identities=15%  Similarity=0.278  Sum_probs=87.8

Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--c---eeEE--eCCcCeeeEEEcC--CCCeEEEEccCCCCC
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--R---PILE--LGSGPYNTVRWNP--KGKFLCLAGFGNLPG  148 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~---~~~~--~~~~~~~~~~~sP--dG~~l~~~g~~n~~g  148 (321)
                      .-.|.+-||++.|.+.|+++|+|  ..|.++.|||.+.  .   ....  .|.+.+..+.|.+  .|+.|++++   .|+
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtC--SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Dr   83 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATC--SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDR   83 (361)
T ss_pred             ccCCcceeeeeeecccCceeeec--cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCC
Confidence            33577899999999999999997  5578999999632  1   1112  2888999999986  699999999   999


Q ss_pred             cEEEEECC--C-------CeEEEeeeCC--CeeeEEEccC--CCEEEEEEcCCceeecCcEEEEee
Q 020756          149 DMAFWDYV--D-------GKQLGTTRAE--CSVTSEWSPD--GRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       149 ~i~iwD~~--~-------~~~i~~~~~~--~~~~~~wSpd--G~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ++.||.-.  +       ....+++...  .+++++|+|.  |-.||+++      .|+.++||+.
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~------aDG~lRIYEA  143 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS------ADGILRIYEA  143 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec------cCcEEEEEec
Confidence            99999752  1       1234445443  7899999995  88888888      4999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=7.5e-07  Score=81.63  Aligned_cols=139  Identities=14%  Similarity=0.186  Sum_probs=111.5

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC------C-ceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------C-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~------~-~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      +.|.+-|++++||.+|+.|+.  |..|..+.+|++.      . ++|...   |...+.++.|.-..++|.+++   .++
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~S--GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~  127 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLAS--GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWG  127 (609)
T ss_pred             hhhccccceeeeccCCeEEee--cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC---Ccc
Confidence            358899999999999888777  6778899999873      2 455544   457899999999888888888   889


Q ss_pred             cEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-----CceeEEecc-CceEEEE
Q 020756          149 DMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-----GSLFFKKMF-DKLFQAE  218 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-----g~~l~~~~~-~~~~~~~  218 (321)
                      +|.+.|+++.+.+..+.+.    .++.+..+|....|++.+      .+..|.|||..     +.+++.... ..++.+.
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t------~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT------RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe------cCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            9999999999888887664    688899999988888888      38889999984     344444443 5789999


Q ss_pred             EecCCCCCCC
Q 020756          219 WKPVSPDKFG  228 (321)
Q Consensus       219 w~P~~~~~~~  228 (321)
                      |+|..|.++.
T Consensus       202 F~P~~P~Li~  211 (609)
T KOG4227|consen  202 FHPETPALIL  211 (609)
T ss_pred             ecCCCceeEE
Confidence            9998776663

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.58  E-value=2e-05  Score=71.87  Aligned_cols=208  Identities=14%  Similarity=0.218  Sum_probs=134.3

Q ss_pred             ceEEEEEcCCcCCCCc-eeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee---ecC
Q 020756            5 ASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLR   80 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~-i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v---~l~   80 (321)
                      .-|.+|++.... ++. .-++-.--....-|.|+|+++.|.+....+.       .|...-|.++-+.+....+   .+.
T Consensus        16 ~gI~v~~ld~~~-g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-------~ggvaay~iD~~~G~Lt~ln~~~~~   87 (346)
T COG2706          16 QGIYVFNLDTKT-GELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-------EGGVAAYRIDPDDGRLTFLNRQTLP   87 (346)
T ss_pred             CceEEEEEeCcc-cccchhhhccccCCCceEEECCCCCEEEEEEecCC-------cCcEEEEEEcCCCCeEEEeeccccC
Confidence            347788887522 222 2222223356667899999999988754321       1444456666542222222   112


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe-CCcC----------eeeEEEcCCCCeEEEEccC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL-GSGP----------YNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~-~~~~----------~~~~~~sPdG~~l~~~g~~  144 (321)
                       ..+-.-++.+++|++++++ .+..+.|.++-++..     .+..+ |.+.          +....+.|+|++|++...|
T Consensus        88 -g~~p~yvsvd~~g~~vf~A-nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG  165 (346)
T COG2706          88 -GSPPCYVSVDEDGRFVFVA-NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG  165 (346)
T ss_pred             -CCCCeEEEECCCCCEEEEE-EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence             2233779999999988776 566689999977431     22222 3333          7789999999999999854


Q ss_pred             CCCCcEEEEECCCCeEEEeeeC-----CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--ee---EE-----e
Q 020756          145 NLPGDMAFWDYVDGKQLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF---FK-----K  209 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i~~~~~-----~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l---~~-----~  209 (321)
                      .  -.|.+|+++.+++......     .....+.|+|+|++..+.+-     .+++|-+|.+++.  .+   ..     .
T Consensus       166 ~--Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-----L~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         166 T--DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-----LNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             C--ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-----cCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            3  3799999997754332221     25677999999998887774     6999999999752  11   11     1


Q ss_pred             c---cCceEEEEEecCCCCCCCC
Q 020756          210 M---FDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       210 ~---~~~~~~~~w~P~~~~~~~~  229 (321)
                      .   .....++.-+|++..+|..
T Consensus       239 dF~g~~~~aaIhis~dGrFLYas  261 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYAS  261 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEe
Confidence            1   1256778889999988865

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=9.1e-06  Score=74.59  Aligned_cols=128  Identities=17%  Similarity=0.319  Sum_probs=100.8

Q ss_pred             eEEEEECcC--CCEEEEEEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           85 VHDVQWSYS--GSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        85 v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ++++.|-|.  ...|+.+.  .-+.+++||.+.  .++..|  ...++.++.--|.|++|.++.   ..++|..+|++.+
T Consensus       205 ~tdi~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn---~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN---TKGQLAKFDLRGG  279 (412)
T ss_pred             eccceecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec---ccchhheecccCc
Confidence            568888776  77888874  456999999853  466666  688999999999999999987   8899999999999


Q ss_pred             eEEEe-eeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEEe-ccCceEEEEEecCC
Q 020756          159 KQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK-MFDKLFQAEWKPVS  223 (321)
Q Consensus       159 ~~i~~-~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~~-~~~~~~~~~w~P~~  223 (321)
                      +.+.. +.+  ..+.++.-+|.+++|++++      .|.-++|+|+..+ ++++. -...+..+..+++-
T Consensus       280 kl~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  280 KLLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             eeeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            87766 444  2788899999999999999      5999999999764 44332 23456666666654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.57  E-value=4.3e-06  Score=73.26  Aligned_cols=141  Identities=16%  Similarity=0.214  Sum_probs=104.2

Q ss_pred             CCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCc-eeEEe------------CCcCeeeEEEcCCCCeEEEEccCC
Q 020756           80 RKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL------------GSGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        80 ~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~------------~~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                      .+.+.+.+..|.- ++++++...|++++.+.+||+..+ .+..|            |.+++.++.|.+.-..=+.+|   
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg---  224 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG---  224 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC---
Confidence            3678899999854 677888888999999999999553 22221            678889999986443334444   


Q ss_pred             CCCcEEEEECCC--C----eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEE
Q 020756          146 LPGDMAFWDYVD--G----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQ  216 (321)
Q Consensus       146 ~~g~i~iwD~~~--~----~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~  216 (321)
                      .+-.+..|.++.  +    ....+++++.+..+..-||++.+||++      =|+.++||+. +++.+  .+.|...+.+
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~  298 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNA  298 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeE
Confidence            444666676552  3    233455666888899999999999999      4999999998 45544  7778899999


Q ss_pred             EEEecCCCCCCCC
Q 020756          217 AEWKPVSPDKFGD  229 (321)
Q Consensus       217 ~~w~P~~~~~~~~  229 (321)
                      ++|+|+.+-+..+
T Consensus       299 vAfspd~~lmAaa  311 (323)
T KOG0322|consen  299 VAFSPDCELMAAA  311 (323)
T ss_pred             EEeCCCCchhhhc
Confidence            9999997665554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.56  E-value=1.8e-06  Score=84.91  Aligned_cols=179  Identities=15%  Similarity=0.219  Sum_probs=115.4

Q ss_pred             CCceEEEEEcCCcCCCCceeee---------ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc
Q 020756            3 SPASVQIYACGKDLQSQPLARR---------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH   73 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~---------~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~   73 (321)
                      .+|.|..|++..+..-..+...         .---.....+.|.+...+..++ .||.   |.       ||.....|..
T Consensus       313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV-GTe~---G~-------v~~~~r~g~~  381 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV-GTEE---GK-------VYKGCRKGYT  381 (555)
T ss_pred             cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE-EcCC---cE-------EEEEeccCCc
Confidence            4788888877764311111111         1112455577777765555443 2321   22       3333333322


Q ss_pred             eee--------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEe--CCcCeeeEEEcCCCCeEEEE
Q 020756           74 EGL--------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLA  141 (321)
Q Consensus        74 ~~~--------v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG~~l~~~  141 (321)
                      ...        ....|.++|+.+.++|-+..++...|  |-+++||+..  ..++..+  +...+.+++|||---.++++
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            211        22347899999999999998887755  7899999764  5577766  45568999999977666555


Q ss_pred             ccCCCCCcEEEEECCCC--eEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          142 GFGNLPGDMAFWDYVDG--KQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~--~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +  +.+|.|.|||+...  ..+.+...  ...+.+.|+++|++|+.+.      ..+.+++|++.
T Consensus       460 ~--d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd------~~G~~~~~~l~  516 (555)
T KOG1587|consen  460 V--DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD------ANGTTHILKLS  516 (555)
T ss_pred             E--cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec------CCCcEEEEEcC
Confidence            5  26899999998744  33333322  3456689999999999999      47889998874

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.55  E-value=6.4e-06  Score=79.48  Aligned_cols=188  Identities=17%  Similarity=0.234  Sum_probs=103.9

Q ss_pred             eEEEEEcCCc-----CCCCceeeeecccCc--cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            6 SVQIYACGKD-----LQSQPLARRSFFRCS--TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         6 ~v~v~~~~~~-----~~~~~i~~~~~f~~~--~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      .|+.+++.+.     +..-++..+.....+  ...+.+||+|++++++.        .   |+-.||.  ..+....   
T Consensus         3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g--------~---geY~iyt--~~~~r~k---   66 (443)
T PF04053_consen    3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCG--------D---GEYEIYT--ALAWRNK---   66 (443)
T ss_dssp             EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEE--------T---TEEEEEE--TTTTEEE---
T ss_pred             ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEc--------C---CEEEEEE--ccCCccc---
Confidence            4677777663     112234455544433  57899999999999951        1   2212332  2222221   


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE-eCCCceeEEeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~-d~~~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                        ..+...++.|.+.+ .||+.  ....+|.|| +.+......+. ...+..+..   |.+|+..+   . +.|.|||..
T Consensus        67 --~~G~g~~~vw~~~n-~yAv~--~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~---~-~~i~~yDw~  134 (443)
T PF04053_consen   67 --AFGSGLSFVWSSRN-RYAVL--ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKS---S-DFICFYDWE  134 (443)
T ss_dssp             --EEEE-SEEEE-TSS-EEEEE---TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEE---T-TEEEEE-TT
T ss_pred             --ccCceeEEEEecCc-cEEEE--ECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEEC---C-CCEEEEEhh
Confidence              24667789999955 57775  335689996 45444433442 223455544   89888886   2 379999999


Q ss_pred             CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc------------ee--EEeccCceEEEEEecC
Q 020756          157 DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS------------LF--FKKMFDKLFQAEWKPV  222 (321)
Q Consensus       157 ~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~------------~l--~~~~~~~~~~~~w~P~  222 (321)
                      +++.+..+....+..+.||++|++++..+       ++.+.|++++-+            .+  ..+-...+.+..|.-+
T Consensus       135 ~~~~i~~i~v~~vk~V~Ws~~g~~val~t-------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  135 TGKLIRRIDVSAVKYVIWSDDGELVALVT-------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             T--EEEEESS-E-EEEEE-TTSSEEEEE--------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             HcceeeEEecCCCcEEEEECCCCEEEEEe-------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            99999999877788999999999999998       889999998766            44  2233568888999877


Q ss_pred             CCCCCCC
Q 020756          223 SPDKFGD  229 (321)
Q Consensus       223 ~~~~~~~  229 (321)
                       -.+|+.
T Consensus       208 -~fiYtT  213 (443)
T PF04053_consen  208 -CFIYTT  213 (443)
T ss_dssp             -EEEEE-
T ss_pred             -EEEEEc
Confidence             555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=3e-06  Score=73.47  Aligned_cols=145  Identities=14%  Similarity=0.212  Sum_probs=98.4

Q ss_pred             EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CC------Cceeeee-cCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756           34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DG------THEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g------~~~~~v~-l~~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      -.|+|.++++++.          +-||...++.+.. ..      +....++ ..|++||++++|.  .++|+++ |  |
T Consensus        16 qa~sp~~~~l~ag----------n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-g--d   80 (325)
T KOG0649|consen   16 QAISPSKQYLFAG----------NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-G--D   80 (325)
T ss_pred             HhhCCcceEEEEe----------cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-c--C
Confidence            3689999997663          2235544454432 11      1123444 4589999999998  3344442 3  5


Q ss_pred             CeEEEEeC-------CCcee-------EE--eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--
Q 020756          106 ASATIFNK-------KCRPI-------LE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  167 (321)
Q Consensus       106 ~~i~i~d~-------~~~~~-------~~--~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--  167 (321)
                      +.++-|.-       .++..       +.  ..--.+|.+...|..+.|+++|   .|+.++-||+++|+....+.+|  
T Consensus        81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcc
Confidence            77776642       12211       11  1234589999999999999998   8899999999999999999988  


Q ss_pred             CeeeEEE-ccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          168 CSVTSEW-SPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       168 ~~~~~~w-SpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      .+.++.- +..|+ |++++      .|++++|||...
T Consensus       158 YvH~vv~R~~~~q-ilsG~------EDGtvRvWd~kt  187 (325)
T KOG0649|consen  158 YVHSVVGRNANGQ-ILSGA------EDGTVRVWDTKT  187 (325)
T ss_pred             eeeeeeecccCcc-eeecC------CCccEEEEeccc
Confidence            5666555 45555 77777      599999999843

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=2.3e-06  Score=81.91  Aligned_cols=154  Identities=12%  Similarity=0.132  Sum_probs=110.7

Q ss_pred             eEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe--------CC-----cCee
Q 020756           63 KLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--------GS-----GPYN  127 (321)
Q Consensus        63 ~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~--------~~-----~~~~  127 (321)
                      .||.+++..+ ....+.+ ..+.++.|..++-...|++  |..++.+.+||.+++.+ ..+        +.     ..+.
T Consensus       156 evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~--Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT  232 (703)
T KOG2321|consen  156 EVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLAC--GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT  232 (703)
T ss_pred             ceEEEEcccccccccccc-ccccceeeeecCccceEEe--cccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence            4666666433 2222221 2478999999998777776  78899999999876532 222        11     2378


Q ss_pred             eEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccC--CCEEEEEEcCCceeecCcEEEEee-
Q 020756          128 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD--GRYFMTATTAPRLQIDNGIKIFHH-  201 (321)
Q Consensus       128 ~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpd--G~~l~t~~s~~rl~~d~~v~iw~~-  201 (321)
                      ++.|+-+|=.++++.   ..|.|+|||+++.+.+..-.+.   .+..+.|-+.  +..+++..       ...++|||- 
T Consensus       233 al~F~d~gL~~aVGt---s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-------k~~~kiWd~~  302 (703)
T KOG2321|consen  233 ALKFRDDGLHVAVGT---STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-------KRILKIWDEC  302 (703)
T ss_pred             EEEecCCceeEEeec---cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-------hHHhhhcccc
Confidence            999999999999988   8899999999988665543332   7788999775  45555555       678999996 


Q ss_pred             cCcee-EEeccCceEEEEEecCCCCCCCC
Q 020756          202 NGSLF-FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       202 ~g~~l-~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +|+.+ .......+.+++.-|+...+|.+
T Consensus       303 ~Gk~~asiEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  303 TGKPMASIEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             cCCceeeccccCCcCceeeecCCceEEEe
Confidence            67766 44555679999999998877765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.48  E-value=2.9e-05  Score=73.50  Aligned_cols=158  Identities=12%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCe-EEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEeC-CcCeeeEEEcCCCCeE
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPV-HDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFL  138 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v-~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~-~~~~~~~~~sPdG~~l  138 (321)
                      ..+..|+.... +..-.+...+.+ ..+.++|||+++.++  +.++.+.++|+.. +.+.++. ......+++||||++|
T Consensus        16 ~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~--~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~   92 (369)
T PF02239_consen   16 GSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVA--NRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYV   92 (369)
T ss_dssp             TEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEE--ETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred             CEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEE--cCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence            34677776543 222222233344 457899999999987  4578999999954 4556662 2335679999999999


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC---------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-cee--
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLF--  206 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l--  206 (321)
                      +++..  ..+.+.++|.++.+.+..+...         .+..+.-+|....++++.-     ..+.+.+-|+.. ..+  
T Consensus        93 ~v~n~--~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-----d~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   93 YVANY--EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-----DTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             EEEEE--ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-----TTTEEEEEETTTSSCEEE
T ss_pred             EEEec--CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-----cCCeEEEEEeccccccce
Confidence            99873  4689999999999888876543         3456777899887776662     135566667643 222  


Q ss_pred             -EEeccCceEEEEEecCCCCCCCC
Q 020756          207 -FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 -~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                       ....-..+.++.|.|+..+++..
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va  189 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVA  189 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEE
T ss_pred             eeecccccccccccCcccceeeec
Confidence             22233468899999998877653

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=8.2e-06  Score=78.21  Aligned_cols=140  Identities=21%  Similarity=0.279  Sum_probs=98.9

Q ss_pred             EEEEEC-cCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           86 HDVQWS-YSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        86 ~~~~ws-P~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      .|+.++ |....+++..|   ..|+-+++. +.-+..|  ..+.+|++..+|...+|++++   .+|.|.+||.+....+
T Consensus       137 RDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt---~~g~VEfwDpR~ksrv  210 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT---EDGVVEFWDPRDKSRV  210 (703)
T ss_pred             ccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeecCccceEEecc---cCceEEEecchhhhhh
Confidence            456665 44455555323   357777774 3333334  568899999999999999998   8999999999887666


Q ss_pred             EeeeCC-------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--eeEEeccC--ceEEEEEecC--
Q 020756          162 GTTRAE-------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LFFKKMFD--KLFQAEWKPV--  222 (321)
Q Consensus       162 ~~~~~~-------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l~~~~~~--~~~~~~w~P~--  222 (321)
                      .++...             .++.+.|+-||-+++++++      ++.+.|||+...  ++.+.|..  .+..+.|.+.  
T Consensus       211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             eeeecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            555432             3788999999999999996      899999999543  33443433  6778899875  


Q ss_pred             CCCCCCCcchhhhcc
Q 020756          223 SPDKFGDISELIKSV  237 (321)
Q Consensus       223 ~~~~~~~~~~~~~~~  237 (321)
                      .+.+++....+.+.|
T Consensus       285 q~~v~S~Dk~~~kiW  299 (703)
T KOG2321|consen  285 QNKVVSMDKRILKIW  299 (703)
T ss_pred             CceEEecchHHhhhc
Confidence            455666555555544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.44  E-value=1.7e-06  Score=83.61  Aligned_cols=115  Identities=17%  Similarity=0.302  Sum_probs=81.5

Q ss_pred             ecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCceeE----Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           78 PLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRPIL----EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~~~----~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      .+-|...|.|+.|-| |+ .|+.+  ..|.++++||+++..+.    .+ |.+.+.+++|.|+...+++.|+  .||.|.
T Consensus        96 ~~aH~nAifDl~wap-ge~~lVsa--sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg--RDg~il  170 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAP-GESLLVSA--SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG--RDGEIL  170 (720)
T ss_pred             cccccceeEeeccCC-CceeEEEc--cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc--CCCcEE
Confidence            345899999999999 55 44444  44779999999654222    22 7889999999998876655542  779999


Q ss_pred             EEECCCCe---------------------------EEEeeeCC--Ceee---EEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756          152 FWDYVDGK---------------------------QLGTTRAE--CSVT---SEWSPDGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       152 iwD~~~~~---------------------------~i~~~~~~--~~~~---~~wSpdG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      |||++-..                           .+....++  .+..   +-+.-|..+||+++.     .|..+++|
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-----~D~~iKVW  245 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA-----ADSTIKVW  245 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC-----CCcceEEE
Confidence            99986321                           01111111  2222   567789999999996     59999999


Q ss_pred             eec
Q 020756          200 HHN  202 (321)
Q Consensus       200 ~~~  202 (321)
                      |+.
T Consensus       246 DLR  248 (720)
T KOG0321|consen  246 DLR  248 (720)
T ss_pred             eec
Confidence            994

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.44  E-value=1e-05  Score=79.71  Aligned_cols=191  Identities=15%  Similarity=0.188  Sum_probs=122.5

Q ss_pred             ccceEEeCCCCCe--eEEEEEecccCCC----ceeecce--eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE
Q 020756           30 STVQLNWNRGSTG--LLAVAQSDVDKTN----QSYYGES--KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY  101 (321)
Q Consensus        30 ~~~~~~Wsp~G~~--l~~~~~~d~d~t~----~s~~g~~--~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~  101 (321)
                      -...+.|+|++.-  ...++-.+.+...    +..+...  .+++++..........+.-..+|.++.|+|....+++. 
T Consensus       182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~g-  260 (555)
T KOG1587|consen  182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAG-  260 (555)
T ss_pred             ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEe-
Confidence            3457889998883  2222222211111    1111121  36666665544455555678899999999988777775 


Q ss_pred             ccCCCeEEEEeCCCce---eEEe------CCcCeeeEEEcCCCCe--EEEEccCCCCCcEEEEECCCCeE----------
Q 020756          102 GFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPKGKF--LCLAGFGNLPGDMAFWDYVDGKQ----------  160 (321)
Q Consensus       102 g~~~~~i~i~d~~~~~---~~~~------~~~~~~~~~~sPdG~~--l~~~g~~n~~g~i~iwD~~~~~~----------  160 (321)
                      |.-.|.|.+||++...   ...+      |..++..+.|-.+-.-  +++++   .||.|..|+++...+          
T Consensus       261 G~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s---sDG~i~~W~~~~l~~P~e~~~~~~~  337 (555)
T KOG1587|consen  261 GCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS---SDGSICSWDTDMLSLPVEGLLLESK  337 (555)
T ss_pred             eccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe---cCCcEeeeeccccccchhhcccccc
Confidence            6778899999995432   2111      6788999999875444  78887   799999998774110          


Q ss_pred             ----------------------------------EE-------------------eeeCC--CeeeEEEccCCCEEEEEE
Q 020756          161 ----------------------------------LG-------------------TTRAE--CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       161 ----------------------------------i~-------------------~~~~~--~~~~~~wSpdG~~l~t~~  185 (321)
                                                        +.                   .+..|  .+..+.++|=+..+.+++
T Consensus       338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~  417 (555)
T KOG1587|consen  338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV  417 (555)
T ss_pred             cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence                                              00                   00011  445577888766666666


Q ss_pred             cCCceeecCcEEEEeec--Ccee--EEeccCceEEEEEecCCCCCCCCc
Q 020756          186 TAPRLQIDNGIKIFHHN--GSLF--FKKMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       186 s~~rl~~d~~v~iw~~~--g~~l--~~~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      .      |-+++||+-.  ...+  +..+...|.+++|+|..+.+|...
T Consensus       418 g------DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  418 G------DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             c------cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence            3      8999999864  2233  444556799999999999888653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.42  E-value=4.1e-07  Score=84.91  Aligned_cols=172  Identities=12%  Similarity=0.165  Sum_probs=124.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |.-|.|..++..+   .+.....+.. ..+.++.|-.+-+++++..        +.     .+|..+-+|.  ...-+..
T Consensus       148 GrKGHlAa~Dw~t---~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ--------K~-----y~yvYD~~Gt--ElHClk~  208 (545)
T KOG1272|consen  148 GRKGHLAAFDWVT---KKLHFEINVM-ETVRDVTFLHNEQFFAVAQ--------KK-----YVYVYDNNGT--ELHCLKR  208 (545)
T ss_pred             CCccceeeeeccc---ceeeeeeehh-hhhhhhhhhcchHHHHhhh--------hc-----eEEEecCCCc--EEeehhh
Confidence            4567777777777   4444444433 3455778888888888752        22     2455555553  3333445


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|..+.|-|.-=.|+.  .++.+-+..-|+. ++.+..+  +.+....+.-+|-...|-++.   ..|+|.+|.....
T Consensus       209 ~~~v~rLeFLPyHfLL~~--~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~sk  283 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVA--ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNSK  283 (545)
T ss_pred             cCchhhhcccchhheeee--cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCCc
Confidence            678888999997533433  5777888888984 5566666  677788889999888888877   7899999999888


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +.+..+-.|  .+..+++.++|+|++|++      .|+.++|||+..
T Consensus       284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  284 EPLVKILCHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRN  324 (545)
T ss_pred             chHHHHHhcCCCcceEEECCCCcEEeecc------cccceeEeeecc
Confidence            766555454  788999999999999999      599999999953

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.40  E-value=1.4e-05  Score=75.29  Aligned_cols=142  Identities=19%  Similarity=0.279  Sum_probs=85.5

Q ss_pred             CCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc
Q 020756           37 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  116 (321)
Q Consensus        37 sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~  116 (321)
                      ||||+++++.... ....-.++.+  .+|+.++.......+... ...+..+.|||+|+.++++.+   +.|.+.+..+.
T Consensus         1 S~d~~~~l~~~~~-~~~~r~s~~~--~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~---~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNY-TKQWRHSFKG--DYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD---NNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEE-EEESSSEEEE--EEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET---TEEEEESSTTS
T ss_pred             CCCCCeEEEEECc-EEeeeeccce--eEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec---CceEEEECCCC
Confidence            7999999986432 1222233333  466777766544443322 578999999999999999854   47999987554


Q ss_pred             eeEEe---C-----------------CcCeeeEEEcCCCCeEEEEccC--------------------------------
Q 020756          117 PILEL---G-----------------SGPYNTVRWNPKGKFLCLAGFG--------------------------------  144 (321)
Q Consensus       117 ~~~~~---~-----------------~~~~~~~~~sPdG~~l~~~g~~--------------------------------  144 (321)
                      ....+   +                 -.....+.|||||++|++.-+.                                
T Consensus        74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~  153 (353)
T PF00930_consen   74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD  153 (353)
T ss_dssp             EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred             CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence            44433   2                 1234678999999999997431                                


Q ss_pred             -CCCCcEEEEECCCCeE--EEee-----eCCCeeeEEEccCCCEEEEEE
Q 020756          145 -NLPGDMAFWDYVDGKQ--LGTT-----RAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       145 -n~~g~i~iwD~~~~~~--i~~~-----~~~~~~~~~wSpdG~~l~t~~  185 (321)
                       |-.-.+.|+|+.+++.  +...     ....+..+.|++|++.|+...
T Consensus       154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~  202 (353)
T PF00930_consen  154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW  202 (353)
T ss_dssp             ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred             cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence             1112355577776643  2222     112677799999999444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.39  E-value=1.2e-06  Score=81.97  Aligned_cols=148  Identities=15%  Similarity=0.264  Sum_probs=101.8

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEE
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~  140 (321)
                      |.+.++..+....--....+.+..+.=+|-.-.+.+  |-..|++.+|.-.. +++..+  |.+++++|++.|+|+++++
T Consensus       233 L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~--GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaT  310 (545)
T KOG1272|consen  233 LKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL--GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMAT  310 (545)
T ss_pred             eEEEeechhhhhHHHHccCCccchhhcCCccceEEE--cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEee
Confidence            455555443211111124577777888887765555  66778999998743 344444  8999999999999999999


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee--cCc----eeEEec--c
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGS----LFFKKM--F  211 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~--~g~----~l~~~~--~  211 (321)
                      +|   +|..|.|||+++...+.++.. +....+++|..|- ||.+.       ...+.||.=  .|.    ..|-.|  .
T Consensus       311 tG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~~~-------G~~v~iw~d~~~~s~~~~~pYm~H~~~  379 (545)
T KOG1272|consen  311 TG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LALSY-------GDHVQIWKDALKGSGHGETPYMNHRCG  379 (545)
T ss_pred             cc---cccceeEeeeccccccceeecCCCccccccccccc-eeeec-------CCeeeeehhhhcCCCCCCcchhhhccC
Confidence            99   999999999998877666655 4677788988875 44444       678999963  211    112222  2


Q ss_pred             CceEEEEEecCCC
Q 020756          212 DKLFQAEWKPVSP  224 (321)
Q Consensus       212 ~~~~~~~w~P~~~  224 (321)
                      ..|.++.|.|...
T Consensus       380 ~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  380 GPVEDLRFCPYED  392 (545)
T ss_pred             cccccceeccHHH
Confidence            3677888888543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.37  E-value=1.2e-06  Score=92.93  Aligned_cols=171  Identities=16%  Similarity=0.198  Sum_probs=122.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      ++.|+|++|.....  .+.+.-++..++.+..+.++.+|+...+.     |-.|.       |-++++.-. ...--.-|
T Consensus      2227 s~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~-----d~dg~-------l~l~q~~pk-~~~s~qch 2291 (2439)
T KOG1064|consen 2227 SQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIV-----DGDGD-------LSLWQASPK-PYTSWQCH 2291 (2439)
T ss_pred             CCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeee-----ccCCc-------eeecccCCc-ceeccccC
Confidence            57899999999883  45567777888888899999999998774     22222       223332211 11111125


Q ss_pred             CCCeEEEEECcCCCEEEEEE-ccCCCeEEEEeCC----CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKK----CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~-g~~~~~i~i~d~~----~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ....+|+.|=-  ..++... ...++.+.+||.-    .-.+++-|.+.+.+++|-|.-+.|+++|   .+|.|++||++
T Consensus      2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg---r~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG---RKGEVCLFDIR 2366 (2439)
T ss_pred             Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC---CcCcEEEeehH
Confidence            66778888865  3455542 2334589999973    2355666999999999999999999999   99999999999


Q ss_pred             CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          157 DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       157 ~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      ..++++++..       |. .-.+|+++++      .+.++||++++-.+
T Consensus      2367 qrql~h~~~~-------~~-~~~~f~~~ss------~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2367 QRQLRHTFQA-------LD-TREYFVTGSS------EGNIKIWRLSEFGL 2402 (2439)
T ss_pred             HHHHHHHhhh-------hh-hhheeeccCc------ccceEEEEccccch
Confidence            8888777765       55 5678888885      89999999986543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.36  E-value=2.5e-05  Score=75.49  Aligned_cols=123  Identities=10%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  106 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~  106 (321)
                      ..+...+.||....+.+..+...+...|... -+..+|-+..+.. ......+.....|.+++++|+.+.|++  |+.|+
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~-~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~Dg  281 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPS-ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDG  281 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCce-eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCC
Confidence            3566788888766666665443333334331 1233454443321 112233456789999999999999999  68899


Q ss_pred             eEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756          107 SATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus       107 ~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .+.+||......... ..-..+.++|+|+|..+++++   ..|.|.+||+.
T Consensus       282 SiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s---~qGelQ~FD~A  329 (545)
T PF11768_consen  282 SIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS---EQGELQCFDMA  329 (545)
T ss_pred             eEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc---CCceEEEEEee
Confidence            999999866533333 344567899999999999998   88999999976

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=5.1e-05  Score=75.89  Aligned_cols=131  Identities=13%  Similarity=0.153  Sum_probs=93.3

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-------eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-------LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-------~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      -..+..++.|..+.++..   ..+.+|+...+..+.       .|.-.+++.++||++++++++.   .+|.|.+|.--.
T Consensus       163 ~~~I~~~~~ge~~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d---~dGrI~vw~d~~  236 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHM---CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD---SDGRILVWRDFG  236 (792)
T ss_pred             CccEEEcCCceEEEEEEe---eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec---cCCcEEEEeccc
Confidence            356888999988888643   367788764321111       1555688999999999999998   899999995322


Q ss_pred             --C--eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cc-eeEEeccCceEEEEEecCCCCCC
Q 020756          158 --G--KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GS-LFFKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       158 --~--~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~-~l~~~~~~~~~~~~w~P~~~~~~  227 (321)
                        .  ...+.+.-|  .+.++.||+||.+|++|+      ..+-+.+|.+. ++ .+...--..+..+.|+||+....
T Consensus       237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG------~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~s  308 (792)
T KOG1963|consen  237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG------REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYS  308 (792)
T ss_pred             cccccccceEEEecccccceeEEecCCceEeecc------cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEE
Confidence              2  112223323  899999999999999999      47888999983 33 33444446788999999876433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.32  E-value=3.3e-05  Score=81.01  Aligned_cols=189  Identities=16%  Similarity=0.290  Sum_probs=115.5

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC------CCCCeEEEEECcCCCEEEEEEcc
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYGF  103 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~------~~~~v~~~~wsP~g~~l~~~~g~  103 (321)
                      ......|....+.++++...    +...  ....+......+.......++      ..+.|.++.+-++...++++  .
T Consensus        23 ~~~~~~~d~~sd~i~~~~~~----~~~~--~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~--~   94 (928)
T PF04762_consen   23 PITATAFDSDSDSIYFVLGP----NEID--YVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIA--L   94 (928)
T ss_pred             ccceEEEecCCCeEEEEECC----CCcc--eEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEE--E
Confidence            34566788877777776421    1110  111222222222112222322      34689999999999999987  4


Q ss_pred             CCCeEEEE----eCCCceeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC----C----------------
Q 020756          104 MPASATIF----NKKCRPILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----D----------------  157 (321)
Q Consensus       104 ~~~~i~i~----d~~~~~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~----~----------------  157 (321)
                      ..|.|.++    |.....+-..+  ...+.+.+||||+..|++..   .+++|.+.+.+    .                
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT---~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~Vs  171 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT---GEGNLLLMTRDFDPISEVPLDSDDFGESKHVS  171 (928)
T ss_pred             CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe---CCCEEEEEeccceEEEEeecCccccCCCceee
Confidence            46778877    54443333332  67899999999999999987   66777765432    0                


Q ss_pred             ---CeEEEeeeC--------------------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE
Q 020756          158 ---GKQLGTTRA--------------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK  208 (321)
Q Consensus       158 ---~~~i~~~~~--------------------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~  208 (321)
                         |++-+.|.+                          ..-..++|-.||+|||+.+-.+-......++||+-.|.+...
T Consensus       172 VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~st  251 (928)
T PF04762_consen  172 VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQST  251 (928)
T ss_pred             eccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEec
Confidence               111111110                          023458999999999998843222123579999999987743


Q ss_pred             -eccCce-EEEEEecCCCCCCCC
Q 020756          209 -KMFDKL-FQAEWKPVSPDKFGD  229 (321)
Q Consensus       209 -~~~~~~-~~~~w~P~~~~~~~~  229 (321)
                       +..+.+ ..++|+|.+..|.+.
T Consensus       252 SE~v~gLe~~l~WrPsG~lIA~~  274 (928)
T PF04762_consen  252 SEPVDGLEGALSWRPSGNLIASS  274 (928)
T ss_pred             cccCCCccCCccCCCCCCEEEEE
Confidence             333333 358999999877654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.29  E-value=0.00012  Score=63.71  Aligned_cols=153  Identities=10%  Similarity=0.142  Sum_probs=106.5

Q ss_pred             cceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeC---Cc---------Ce
Q 020756           60 GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG---SG---------PY  126 (321)
Q Consensus        60 g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~---~~---------~~  126 (321)
                      |...+|.+++..+..++.-..|.+.||++.--....++..  |.+|++++|||.++. .+..++   +.         .+
T Consensus       134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils--G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi  211 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS--GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI  211 (325)
T ss_pred             CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee--cCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence            5667899999877777777789999999998444445555  799999999999653 444441   11         12


Q ss_pred             eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          127 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       127 ~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      .+++-  +...|+.++    ...+.+|.+++.++.+.+.-+ .+..+.|--|  .++.++      ..+.+.-|.++|.+
T Consensus       212 gala~--~edWlvCGg----Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G------~g~~v~~~~l~Gvl  277 (325)
T KOG0649|consen  212 GALAV--NEDWLVCGG----GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGG------EGNHVQSYTLNGVL  277 (325)
T ss_pred             EEEec--cCceEEecC----CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEec------cccceeeeeeccEE
Confidence            33333  345666654    357999999999888888765 5556666544  455555      37899999999987


Q ss_pred             eEEec--cCceEEEEEecCCCCCCC
Q 020756          206 FFKKM--FDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       206 l~~~~--~~~~~~~~w~P~~~~~~~  228 (321)
                      -....  ...++..+|+-.+-.+++
T Consensus       278 ~a~ip~~s~~c~s~s~~~~p~k~~s  302 (325)
T KOG0649|consen  278 QANIPVESTACYSASWQTSPIKFIS  302 (325)
T ss_pred             EEeccCCccceeeecccCCceEEEE
Confidence            74443  346888999877644443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.29  E-value=6e-06  Score=78.79  Aligned_cols=139  Identities=14%  Similarity=0.205  Sum_probs=99.7

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe---CCcCeeeEEEcCC--CCeEEEEccCCCCCcEEEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~---~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iw  153 (321)
                      .|.|-|+++.|+-+|..|+.  |..|..+.|||. ..++++.+   |.+.|.++.|-|.  .+.|+++.   .|..|+++
T Consensus        48 GH~GCVN~LeWn~dG~lL~S--GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA---gDk~i~lf  122 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLAS--GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA---GDKLIKLF  122 (758)
T ss_pred             cccceecceeecCCCCEEee--cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc---CcceEEEE
Confidence            58999999999999999888  788889999997 55666666   6788999999995  34555555   67899999


Q ss_pred             ECCCCe----------EEEeeeCC--CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEeecCcee-------------E
Q 020756          154 DYVDGK----------QLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLF-------------F  207 (321)
Q Consensus       154 D~~~~~----------~i~~~~~~--~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------------~  207 (321)
                      |+...+          .+..+..|  .+-.++-.|+| ..+.+++      .|++++-+|+.....             +
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas------EDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS------EDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec------CCcceeeecccCCccCCccccccHHHHHh
Confidence            998532          11112222  34457788898 5555565      599999999954211             1


Q ss_pred             EeccCceEEEEEecCCCCCCCC
Q 020756          208 KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       208 ~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ....-+++.+.-+|..+..+.-
T Consensus       197 ~~~lielk~ltisp~rp~~laV  218 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAV  218 (758)
T ss_pred             chhhheeeeeeecCCCCceEEe
Confidence            1222477888999988877643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=0.0002  Score=69.32  Aligned_cols=162  Identities=19%  Similarity=0.217  Sum_probs=104.3

Q ss_pred             cceEEeCCCCCeeEEEEEec---ccCCCc--eeecceeEEEEEcCCCc-eeeeecCCCCCeEEEEECc-CCCEEEEEEc-
Q 020756           31 TVQLNWNRGSTGLLAVAQSD---VDKTNQ--SYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYG-  102 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d---~d~t~~--s~~g~~~l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP-~g~~l~~~~g-  102 (321)
                      ...+.||+..+.+++=-...   +-....  .-+...++.++...+.. +....+..+....++.||- +..++.++.- 
T Consensus       148 ~r~l~~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s  227 (545)
T PF11768_consen  148 ERHLSVNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQS  227 (545)
T ss_pred             ceeEeeccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEe
Confidence            34566777766666542221   111111  11123367777776643 3333344566667899987 4445555421 


Q ss_pred             -----cCCCeEEEEeCCCcee-----EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeee
Q 020756          103 -----FMPASATIFNKKCRPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT  171 (321)
Q Consensus       103 -----~~~~~i~i~d~~~~~~-----~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~  171 (321)
                           .......+|+...+.+     .++ -...+.+.++||+...|++|.   .||.|.+||...+.....-..--.+.
T Consensus       228 ~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~DgSiiLyD~~~~~t~~~ka~~~P~~  304 (545)
T PF11768_consen  228 ISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---EDGSIILYDTTRGVTLLAKAEFIPTL  304 (545)
T ss_pred             cCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---cCCeEEEEEcCCCeeeeeeecccceE
Confidence                 1112566788743322     334 467899999999999999999   99999999997763333222226778


Q ss_pred             EEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ++|+|+|..|++++.      .+.+.+||.
T Consensus       305 iaWHp~gai~~V~s~------qGelQ~FD~  328 (545)
T PF11768_consen  305 IAWHPDGAIFVVGSE------QGELQCFDM  328 (545)
T ss_pred             EEEcCCCcEEEEEcC------CceEEEEEe
Confidence            999999999999994      788999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=2.2e-05  Score=80.05  Aligned_cols=171  Identities=14%  Similarity=0.188  Sum_probs=110.4

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeeccee-EEEEEcCCCc-eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK-LNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASA  108 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~-l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i  108 (321)
                      +.+.|..+..+|++.             |+.. +-+|+..... ...++...+.-|+.+.=+- .|+.|+.  |+.||.+
T Consensus      1169 ~v~dWqQ~~G~Ll~t-------------Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A--GfaDGsv 1233 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVT-------------GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA--GFADGSV 1233 (1387)
T ss_pred             eeeehhhhCCeEEec-------------CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE--eecCCce
Confidence            667777777776664             3222 3344444431 2234444455566555443 4566665  8889999


Q ss_pred             EEEeCCCcee----EEe--CCcC--eeeEEEcCCCC-eEEEEccCCCCCcEEEEECCCCeEE------EeeeCC-CeeeE
Q 020756          109 TIFNKKCRPI----LEL--GSGP--YNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQL------GTTRAE-CSVTS  172 (321)
Q Consensus       109 ~i~d~~~~~~----~~~--~~~~--~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~~~~~i------~~~~~~-~~~~~  172 (321)
                      .+||.+..+.    ...  |...  |..+.+.+.|- .|++++   .+|.|++||++.....      ...+.. ..+.+
T Consensus      1234 RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs---~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal 1310 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS---QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTAL 1310 (1387)
T ss_pred             EEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec---cCCeEEEEecccCcccccceeeeccccCccceee
Confidence            9999975432    222  5444  88899988765 488887   8999999999863221      212222 47889


Q ss_pred             EEccCCCEEEEEEcCCceeecCcEEEEeecCceeE--Ee-------ccCceEEEEEecCCCCCC
Q 020756          173 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF--KK-------MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       173 ~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~--~~-------~~~~~~~~~w~P~~~~~~  227 (321)
                      ..+++...||+|+       -..++||++.|+++.  +.       ....+..+.|||....+.
T Consensus      1311 ~VH~hapiiAsGs-------~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGS-------AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred             eeccCCCeeeecC-------cceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence            9999999999999       488999999998772  21       122456677777654444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.22  E-value=0.00024  Score=66.91  Aligned_cols=201  Identities=14%  Similarity=0.108  Sum_probs=111.3

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC---
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---   81 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~---   81 (321)
                      +.+-||++.+    +.+....-.........|||+|++++++.             ..+||+.+..+....+++.+-   
T Consensus        23 ~~y~i~d~~~----~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-------------~~nly~~~~~~~~~~~lT~dg~~~   85 (353)
T PF00930_consen   23 GDYYIYDIET----GEITPLTPPPPKLQDAKWSPDGKYIAFVR-------------DNNLYLRDLATGQETQLTTDGEPG   85 (353)
T ss_dssp             EEEEEEETTT----TEEEESS-EETTBSEEEE-SSSTEEEEEE-------------TTEEEEESSTTSEEEESES--TTT
T ss_pred             eeEEEEecCC----CceEECcCCccccccceeecCCCeeEEEe-------------cCceEEEECCCCCeEEecccccee
Confidence            4567888877    22333332256778899999999999973             235777776555455554322   


Q ss_pred             --------------CCCeEEEEECcCCCEEEEEEccCC--------------------------------C--eEEEEeC
Q 020756           82 --------------EGPVHDVQWSYSGSEFAVVYGFMP--------------------------------A--SATIFNK  113 (321)
Q Consensus        82 --------------~~~v~~~~wsP~g~~l~~~~g~~~--------------------------------~--~i~i~d~  113 (321)
                                    -+.-..+-|||||++|++..-++.                                .  .+.|+|+
T Consensus        86 i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~  165 (353)
T PF00930_consen   86 IYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL  165 (353)
T ss_dssp             EEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES
T ss_pred             EEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC
Confidence                          123457889999999988631110                                0  2334565


Q ss_pred             CCceeEEe--------CCcCeeeEEEcCCCCeEEE-EccC-CCCCcEEEEECCCCeE--EEeeeCC-C---eeeEEEc-c
Q 020756          114 KCRPILEL--------GSGPYNTVRWNPKGKFLCL-AGFG-NLPGDMAFWDYVDGKQ--LGTTRAE-C---SVTSEWS-P  176 (321)
Q Consensus       114 ~~~~~~~~--------~~~~~~~~~~sPdG~~l~~-~g~~-n~~g~i~iwD~~~~~~--i~~~~~~-~---~~~~~wS-p  176 (321)
                      .+..+..+        ....+..+.|+++++.|++ -..+ .....+.+.|..++++  +...... .   ...+.|. +
T Consensus       166 ~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~  245 (353)
T PF00930_consen  166 ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP  245 (353)
T ss_dssp             SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred             CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence            44433222        2234567999999994444 3321 1234677788877632  3322222 1   2235554 8


Q ss_pred             CCCEEEEEEcCCceeecCcEEEEe--ecCceeEEecc--Cce-EEEEEecCCCCCC
Q 020756          177 DGRYFMTATTAPRLQIDNGIKIFH--HNGSLFFKKMF--DKL-FQAEWKPVSPDKF  227 (321)
Q Consensus       177 dG~~l~t~~s~~rl~~d~~v~iw~--~~g~~l~~~~~--~~~-~~~~w~P~~~~~~  227 (321)
                      +|..++..+.     .++--+||-  .+|........  -+| .-+.|.++...+|
T Consensus       246 ~~~~~l~~s~-----~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  246 DGNEFLWISE-----RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIY  296 (353)
T ss_dssp             TSSEEEEEEE-----TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEE
T ss_pred             CCCEEEEEEE-----cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEE
Confidence            8888887775     255555554  45655432222  234 4578888776655

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.21  E-value=8.4e-05  Score=70.07  Aligned_cols=119  Identities=18%  Similarity=0.320  Sum_probs=86.2

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEE
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~  140 (321)
                      |-..+..+...+++. ..-+-|.++.-+|+|+.+++.  +....+.++|+++..+..+   ..+-+..+.|||++++|+.
T Consensus       384 l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vva--Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAY  460 (668)
T COG4946         384 LGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVA--NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY  460 (668)
T ss_pred             EEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEE--cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEE
Confidence            444455554323332 345789999999999998884  5455888889987777666   3567899999999999999


Q ss_pred             Ecc-CCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEE
Q 020756          141 AGF-GNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       141 ~g~-~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~  185 (321)
                      +-. |.....|+++|+.+++....... ..-...+|.|||++|..-+
T Consensus       461 afP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         461 AFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            743 22457899999988876554332 2445678999999988655

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.21  E-value=0.0011  Score=58.94  Aligned_cols=138  Identities=17%  Similarity=0.179  Sum_probs=89.0

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCC------CeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMP------ASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~------~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      ....++++++|+|+..+...+...      +.+..++..+...... +-...|.++|+|||+.|.++..  ..+.|+.+|
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds--~~~~i~~~~  162 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADS--FNGRIWRFD  162 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEET--TTTEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccc--ccceeEEEe
Confidence            346789999999996666433221      4577777773322222 3456789999999998877653  457899999


Q ss_pred             CCC--C-----eEEEeeeCCC--eeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEe-cC
Q 020756          155 YVD--G-----KQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWK-PV  222 (321)
Q Consensus       155 ~~~--~-----~~i~~~~~~~--~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~-P~  222 (321)
                      ++.  .     +.+..+....  .-.+++..+|+..++...      .+.|.+++-+|+++...  ....+.+++|- |+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~  236 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREIELPVPRPTNCAFGGPD  236 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEEE-SSSSEEEEEEESTT
T ss_pred             ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEEcCCCCCEEEEEEECCC
Confidence            863  2     1222222322  456999999997776663      78999999999988544  33578888884 44


Q ss_pred             CCCCC
Q 020756          223 SPDKF  227 (321)
Q Consensus       223 ~~~~~  227 (321)
                      ...||
T Consensus       237 ~~~L~  241 (246)
T PF08450_consen  237 GKTLY  241 (246)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            34333

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.19  E-value=1.4e-05  Score=81.16  Aligned_cols=127  Identities=16%  Similarity=0.140  Sum_probs=99.4

Q ss_pred             EEEEEcCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee---EEe-CCcCeeeEEEcCCCCeE
Q 020756           64 LNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        64 l~~l~~~g~~~~~v-~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~---~~~-~~~~~~~~~~sPdG~~l  138 (321)
                      |+.+..... ...+ ...|++.|.++.|+-||++++++  .+|..+++|+++....   ..| |...+..+.|+|+  .|
T Consensus       157 iivW~~~~d-n~p~~l~GHeG~iF~i~~s~dg~~i~s~--SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i  231 (967)
T KOG0974|consen  157 IIVWKPHED-NKPIRLKGHEGSIFSIVTSLDGRYIASV--SDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI  231 (967)
T ss_pred             EEEEecccc-CCcceecccCCceEEEEEccCCcEEEEE--ecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence            444444433 2333 45699999999999999999998  6789999999965432   345 7889999999998  88


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      ++.|   .|.+..+|+. +++.+..+..|   .+..+..+++.-.++|++.      |+++++||+.+..
T Consensus       232 ~t~g---edctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~------Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  232 ITVG---EDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN------DSTLKLWDLNGRG  291 (967)
T ss_pred             EEec---cceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeecc------Ccchhhhhhhccc
Confidence            9998   8999999977 45555566666   6777888888888888884      9999999996643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=3.8e-05  Score=73.51  Aligned_cols=183  Identities=13%  Similarity=0.150  Sum_probs=124.6

Q ss_pred             CCceEEEEEc---CCcC--CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce---
Q 020756            3 SPASVQIYAC---GKDL--QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---   74 (321)
Q Consensus         3 ~p~~v~v~~~---~~~~--~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~---   74 (321)
                      ..+.+.||++   ..-.  .-++|.+...+++.+..+.-++.|..++... .         .|...+|.+..+....   
T Consensus       314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg-~---------Dg~I~~w~~p~n~dp~ds~  383 (577)
T KOG0642|consen  314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG-I---------DGTIRCWNLPPNQDPDDSY  383 (577)
T ss_pred             cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec-c---------CceeeeeccCCCCCccccc
Confidence            4577889999   2200  1235555555667777777777777765531 1         1444445443322211   


Q ss_pred             -----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-------------------------------
Q 020756           75 -----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-------------------------------  118 (321)
Q Consensus        75 -----~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-------------------------------  118 (321)
                           .-+-+.|.+.|..+++|+...+|+.|  +.|+++++|+......                               
T Consensus       384 dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc--s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  384 DPSVLSGTLLGHTDAVWLLALSSTKDRLLSC--SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF  461 (577)
T ss_pred             Ccchhccceeccccceeeeeecccccceeee--cCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccc
Confidence                 11234588999999999988888887  5578998885421100                               


Q ss_pred             --------------EEeC---------CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEE
Q 020756          119 --------------LELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE  173 (321)
Q Consensus       119 --------------~~~~---------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~  173 (321)
                                    ..+.         ...++.+.|+|.+.+.+.+.   .++.|.++|..+++.+....+|  .+++++
T Consensus       462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---ed~~Ir~~dn~~~~~l~s~~a~~~svtsla  538 (577)
T KOG0642|consen  462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---EDRSIRFFDNKTGKILHSMVAHKDSVTSLA  538 (577)
T ss_pred             ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc---cCCceecccccccccchheeeccceeccee
Confidence                          0010         12456788999998877777   7899999999999999888777  678899


Q ss_pred             EccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          174 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      +.|+|-||++++.      |+.+.+|.+.-..+
T Consensus       539 i~~ng~~l~s~s~------d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  539 IDPNGPYLMSGSH------DGSVRLWKLDVKTC  565 (577)
T ss_pred             ecCCCceEEeecC------Cceeehhhccchhe
Confidence            9999999999995      99999998854433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=3.8e-05  Score=75.52  Aligned_cols=206  Identities=14%  Similarity=0.257  Sum_probs=127.6

Q ss_pred             CCCceEEEEEcCCcCCC---Cc---eeee------ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc
Q 020756            2 GSPASVQIYACGKDLQS---QP---LARR------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT   69 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~---~~---i~~~------~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~   69 (321)
                      |..|-++|-.+.+..+.   ..   .++.      .-+++.+..+.||-+.+.|-.     .|.+|-.     -+|.+- 
T Consensus        33 G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-----SDt~GlI-----iVWmly-  101 (1189)
T KOG2041|consen   33 GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-----SDTSGLI-----IVWMLY-  101 (1189)
T ss_pred             cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-----cCCCceE-----EEEeee-
Confidence            67788888888763211   11   1222      234567778889988887633     2333322     112111 


Q ss_pred             CCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE--eCCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           70 DGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        70 ~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~--~~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      +|. -+..+.-..+..|.+++|+-||..+|++  +.||.+.+=.++++.+..  +.......+.||||.+.+++.-   .
T Consensus       102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv--YeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~---a  176 (1189)
T KOG2041|consen  102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIV--YEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKK---A  176 (1189)
T ss_pred             cccHHHHHhhCcCccEEEEEEEcCCCcEEEEE--EccCCEEEEeeccceecchhcchheccceeecccHHHHHhhh---c
Confidence            221 2334444466788999999999999998  457888888888776643  3334455788999998888876   5


Q ss_pred             CCcEEEEECCCC-------eE-E-------------Ee----------------------------------------e-
Q 020756          147 PGDMAFWDYVDG-------KQ-L-------------GT----------------------------------------T-  164 (321)
Q Consensus       147 ~g~i~iwD~~~~-------~~-i-------------~~----------------------------------------~-  164 (321)
                      .|.+.+||.+..       .+ +             ..                                        + 
T Consensus       177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d  256 (1189)
T KOG2041|consen  177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD  256 (1189)
T ss_pred             CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence            678888876531       01 0             00                                        0 


Q ss_pred             eCCCeeeEEEccCCCEEEEEEcCC---ceeecCcEEEEeecCcee--EEeccCceEEEEEecCC
Q 020756          165 RAECSVTSEWSPDGRYFMTATTAP---RLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       165 ~~~~~~~~~wSpdG~~l~t~~s~~---rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~  223 (321)
                      .+-.++.+.|+|+|..|+.++...   .-+..|.+++|..-|..+  ++..-..+..++|--.+
T Consensus       257 tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  257 TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTG  320 (1189)
T ss_pred             cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCc
Confidence            001233468999999999887531   111346788888888777  44455577888886544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=3.1e-05  Score=70.12  Aligned_cols=207  Identities=16%  Similarity=0.211  Sum_probs=122.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCc-cce--EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--ee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCS-TVQ--LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GL   76 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~-~~~--~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~   76 (321)
                      +.+|.||+|+++.   .+++++..+-+.. ...  +.-|..++.+++-  ++.-.+.      ..|+++++.....  ..
T Consensus        91 ssDG~Vr~wD~Rs---~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~G--tE~~~s~------A~v~lwDvR~~qq~l~~  159 (376)
T KOG1188|consen   91 SSDGTVRLWDIRS---QAESARISWTQQSGTPFICLDLNCKKNIIACG--TELTRSD------ASVVLWDVRSEQQLLRQ  159 (376)
T ss_pred             ccCCeEEEEEeec---chhhhheeccCCCCCcceEeeccCcCCeEEec--cccccCc------eEEEEEEeccccchhhh
Confidence            3578999999999   6666666654322 222  2223344444332  2211111      2255555533321  22


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe-CCcCeeeEEEcCCC--CeEEEEccCCCCC
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL-GSGPYNTVRWNPKG--KFLCLAGFGNLPG  148 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~-~~~~~~~~~~sPdG--~~l~~~g~~n~~g  148 (321)
                      ..-.|.+.|+.++|+|..-.+++. |.-||.+.|||++..     ....+ +...|..+.|+-++  +..+++    -..
T Consensus       160 ~~eSH~DDVT~lrFHP~~pnlLlS-GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~E  234 (376)
T KOG1188|consen  160 LNESHNDDVTQLRFHPSDPNLLLS-GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HME  234 (376)
T ss_pred             hhhhccCcceeEEecCCCCCeEEe-ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccC
Confidence            333589999999999987766654 788999999999654     23344 45568999999998  755555    457


Q ss_pred             cEEEEECCCCeEEEeeeCCCeee------------E-EEcc-CCCEEEEEEcCCceeecCcEEEEee----cCcee----
Q 020756          149 DMAFWDYVDGKQLGTTRAECSVT------------S-EWSP-DGRYFMTATTAPRLQIDNGIKIFHH----NGSLF----  206 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~~~~~------------~-~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~----~g~~l----  206 (321)
                      +..+|+++.+.+...++.+.+..            + +.+| ++.+++++++.     -|...|+-+    .|..+    
T Consensus       235 tf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~-----~n~~~~~~~~~~~s~~~~~~~a  309 (376)
T KOG1188|consen  235 TFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD-----SNKGTIFPLVDTSSGSLLTEPA  309 (376)
T ss_pred             ceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc-----cCceeEEEeeecccccccCccc
Confidence            89999999887666655442211            1 2334 55666666541     344444433    23222    


Q ss_pred             -EEe-ccCceEEEEEecCCCCCCCC
Q 020756          207 -FKK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 -~~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                       ..+ +..-|.++.|.-....+|+.
T Consensus       310 ~l~g~~~eiVR~i~~~~~~~~l~TG  334 (376)
T KOG1188|consen  310 ILQGGHEEIVRDILFDVKNDVLYTG  334 (376)
T ss_pred             cccCCcHHHHHHHhhhcccceeecc
Confidence             222 44456677776666666655

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=8.1e-06  Score=77.99  Aligned_cols=116  Identities=15%  Similarity=0.260  Sum_probs=92.9

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC---------CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~---------~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      .|.+-|.+.+|.|....|+.+  +.++.+.+|++.         -+++.+|  |.++|-|+.+++.|..+.++|   .||
T Consensus       292 s~~d~ir~l~~~~sep~lit~--sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg---~Dg  366 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITA--SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG---IDG  366 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEe--ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec---cCc
Confidence            367778889999988888885  788999999881         2477788  899999999999999999999   999


Q ss_pred             cEEEEECC------CC----eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          149 DMAFWDYV------DG----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       149 ~i~iwD~~------~~----~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      +|+.|++-      +.    .....+.+|  .+..+++|..-..|+++++      |+++++|+..+...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~------DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS------DGTVRLWEPTEESP  430 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC------CceEEeeccCCcCc
Confidence            99999543      11    233444555  5667899999888888885      99999999976544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.16  E-value=0.0011  Score=62.10  Aligned_cols=112  Identities=16%  Similarity=0.146  Sum_probs=76.8

Q ss_pred             EECc-CCCEEEEEEccCCCeEEEEeCCCc------eeEEe---------CCcCeeeEEEcCCCCeEEEEccCC-------
Q 020756           89 QWSY-SGSEFAVVYGFMPASATIFNKKCR------PILEL---------GSGPYNTVRWNPKGKFLCLAGFGN-------  145 (321)
Q Consensus        89 ~wsP-~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~---------~~~~~~~~~~sPdG~~l~~~g~~n-------  145 (321)
                      .+++ +|+++.+.  +. +++.+.|+.+.      .+..+         ..+...-++++|+|+.|.+...+.       
T Consensus       200 ~~~~~dg~~~~vs--~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~  276 (352)
T TIGR02658       200 AYSNKSGRLVWPT--YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT  276 (352)
T ss_pred             ceEcCCCcEEEEe--cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence            3455 88887774  43 89999996332      22222         122334599999999888853211       


Q ss_pred             CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeec-CceeEE
Q 020756          146 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-GSLFFK  208 (321)
Q Consensus       146 ~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~  208 (321)
                      ..+.|.++|..+++.+..+.- ..+..+++||||+ +|.+..-     .++.|.+.|.. ++.+..
T Consensus       277 ~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-----~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       277 ASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST-----GDKTLYIFDAETGKELSS  337 (352)
T ss_pred             CCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC-----CCCcEEEEECcCCeEEee
Confidence            125899999999999988764 4888999999999 5554442     47889999984 445543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.14  E-value=0.00021  Score=74.17  Aligned_cols=133  Identities=13%  Similarity=0.296  Sum_probs=85.1

Q ss_pred             EEEECcCCCEEEEEE---ccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--
Q 020756           87 DVQWSYSGSEFAVVY---GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--  158 (321)
Q Consensus        87 ~~~wsP~g~~l~~~~---g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--  158 (321)
                      .+.|--||++|++.+   .....++++||..+. +...   ..+.-.+++|-|.|..|++..-...+++|.|+..+..  
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h  278 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH  278 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence            599999999999842   222268999998732 2222   3445568999999999999764445678999987422  


Q ss_pred             -eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCC
Q 020756          159 -KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       159 -~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~  223 (321)
                       +....+...  .+..++|+-++..|++.++..   ....|++|.+....-   ....++..--+.|+|-.
T Consensus       279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~---e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~  346 (1265)
T KOG1920|consen  279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNL---ENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVT  346 (1265)
T ss_pred             cccccCCcccccchheeeecCCCCceeeeeccc---ccceEEEEEecCeEEEEEEEEeccccccccccCCC
Confidence             222222222  377899999999999865431   133499998754322   12223333336777743

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.14  E-value=0.00028  Score=75.36  Aligned_cols=111  Identities=13%  Similarity=0.070  Sum_probs=76.8

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE--------------EeCC----------cCeeeEEEcCCCCeEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL--------------ELGS----------GPYNTVRWNPKGKFLC  139 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~--------------~~~~----------~~~~~~~~sPdG~~l~  139 (321)
                      ..+.++++|+|+.|+++. ...++|.+||+......              .++.          ..-..+.++|+|+.++
T Consensus       741 ~P~GIavspdG~~LYVAD-s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV  819 (1057)
T PLN02919        741 QPSGISLSPDLKELYIAD-SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV  819 (1057)
T ss_pred             CccEEEEeCCCCEEEEEE-CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence            346799999999888763 44579999998643221              1110          0124688999998666


Q ss_pred             EEccCCCCCcEEEEECCCCeEEEeeeC---------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          140 LAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~~~~i~~~~~---------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      +-.   .++.|.+||..++........               .....+++++||+.+++-+      .++.|++||+...
T Consensus       820 ADs---~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------~Nn~Irvid~~~~  890 (1057)
T PLN02919        820 ADS---YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------NNSLIRYLDLNKG  890 (1057)
T ss_pred             EEC---CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC------CCCEEEEEECCCC
Confidence            554   568999999988765433211               1356689999999766665      4889999999653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.10  E-value=0.00031  Score=63.93  Aligned_cols=175  Identities=14%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEE---EEecccCCCcee----ecceeEEEEEc-CCCcee
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV---AQSDVDKTNQSY----YGESKLNYLTT-DGTHEG   75 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~---~~~d~d~t~~s~----~g~~~l~~l~~-~g~~~~   75 (321)
                      -|.|.||+....  -+.+.....+-.+--++.|.|||+.|++.   ..|..| +|+.-    .=..+|.+++. .|.-..
T Consensus        76 ~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd-~GR~kLNl~tM~psL~~ld~~sG~ll~  152 (305)
T PF07433_consen   76 RGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPD-SGRAKLNLDTMQPSLVYLDARSGALLE  152 (305)
T ss_pred             cEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcc-cCceecChhhcCCceEEEecCCCceee
Confidence            478999999941  46677777788889999999999888775   122111 11110    01234667744 555455


Q ss_pred             eeecC---CCCCeEEEEECcCCCEEEEEE--cc---CCCeEEEEeCCCceeEEe---------CCcCeeeEEEcCCCCeE
Q 020756           76 LVPLR---KEGPVHDVQWSYSGSEFAVVY--GF---MPASATIFNKKCRPILEL---------GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        76 ~v~l~---~~~~v~~~~wsP~g~~l~~~~--g~---~~~~i~i~d~~~~~~~~~---------~~~~~~~~~~sPdG~~l  138 (321)
                      ++.+.   |.-.|..++|+++|..++-..  |.   .+-.+-+++.... +..+         -.+.+.+|+++++|++|
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i  231 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLI  231 (305)
T ss_pred             eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence            55552   566899999999998655542  11   1124555554332 2222         14678899999999999


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~  185 (321)
                      ++++.  ..+.+.+||..+++.+....-.++..++-.++| |+++.+
T Consensus       232 a~tsP--rGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  232 AVTSP--RGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             EEECC--CCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC
Confidence            88874  347999999999999998887888888888888 666655

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.08  E-value=0.00088  Score=59.84  Aligned_cols=129  Identities=17%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ceeEEe--CCcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEECC-C
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYV-D  157 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~~-~  157 (321)
                      ..++.|++.|..+++.  ...+.+.+-+.+.   +.++.+  |.-.+.+..|+-.. +.+.++|   .|+.+..||++ .
T Consensus       124 ~lslD~~~~~~~i~vs--~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p  198 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVS--DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIP  198 (339)
T ss_pred             eeEEEeeccCceEEEE--cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCC
Confidence            4578999999998773  5556666443322   222223  66677777777544 4555566   89999999998 3


Q ss_pred             CeEEEe-eeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeec--CceeEEecc-CceEEEEEecCCC
Q 020756          158 GKQLGT-TRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMF-DKLFQAEWKPVSP  224 (321)
Q Consensus       158 ~~~i~~-~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l~~~~~-~~~~~~~w~P~~~  224 (321)
                      ++.+-. ..-|  .+.++.=|| ++.+|+|++      +|..+++||..  |+.++.... +.||-+.|+|...
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs------YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS------YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEec------cccceeeeehhcccCccccCccccceEEEEecchhh
Confidence            343322 1112  566666665 688899998      79999999985  677765544 5899999999654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.08  E-value=0.00079  Score=59.91  Aligned_cols=152  Identities=13%  Similarity=0.250  Sum_probs=89.9

Q ss_pred             EEeCCCCCeeEEEEEeccc-CCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 020756           34 LNWNRGSTGLLAVAQSDVD-KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  112 (321)
Q Consensus        34 ~~Wsp~G~~l~~~~~~d~d-~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d  112 (321)
                      +.-+.+|+.|+++..+.+. ++-+.-|+.       +.+  .++|+-+..-.=.-++||||+..||+++  ..++|.+||
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~s-------i~~--kcqVpkD~~PQWRkl~WSpD~tlLa~a~--S~G~i~vfd   71 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSS-------IIG--KCQVPKDPNPQWRKLAWSPDCTLLAYAE--STGTIRVFD   71 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchh-------eeE--EEecCCCCCchheEEEECCCCcEEEEEc--CCCeEEEEe
Confidence            4557899999998533211 111111110       001  2344434444456899999999999974  356787777


Q ss_pred             CCCceeE--------------------------------------------------------------Ee---CCcCee
Q 020756          113 KKCRPIL--------------------------------------------------------------EL---GSGPYN  127 (321)
Q Consensus       113 ~~~~~~~--------------------------------------------------------------~~---~~~~~~  127 (321)
                      +.+..++                                                              .|   ....++
T Consensus        72 l~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~  151 (282)
T PF15492_consen   72 LMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN  151 (282)
T ss_pred             cccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence            6321100                                                              11   123577


Q ss_pred             eEEEcCCCCeEEEEccCCCC--------CcEEEEECCCCe----EEE-------------------e--------eeCCC
Q 020756          128 TVRWNPKGKFLCLAGFGNLP--------GDMAFWDYVDGK----QLG-------------------T--------TRAEC  168 (321)
Q Consensus       128 ~~~~sPdG~~l~~~g~~n~~--------g~i~iwD~~~~~----~i~-------------------~--------~~~~~  168 (321)
                      ++.|+|.-++|+++|-.+.+        .-+.-|.+-++.    ++.                   .        .+...
T Consensus       152 ~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~  231 (282)
T PF15492_consen  152 SAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG  231 (282)
T ss_pred             EEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence            88999998999988753322        134455433321    100                   0        01236


Q ss_pred             eeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +..+..||||.+||+...      .+.+.||++-
T Consensus       232 i~kmSlSPdg~~La~ih~------sG~lsLW~iP  259 (282)
T PF15492_consen  232 IFKMSLSPDGSLLACIHF------SGSLSLWEIP  259 (282)
T ss_pred             eEEEEECCCCCEEEEEEc------CCeEEEEecC
Confidence            677899999999999995      8999999983

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.02  E-value=7.6e-05  Score=68.85  Aligned_cols=87  Identities=15%  Similarity=0.040  Sum_probs=67.2

Q ss_pred             eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756           74 EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD  149 (321)
Q Consensus        74 ~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~  149 (321)
                      .....+.|...+.+++||||+++++++  +.|.+|++-... ...+..|   |...|..++.-+ +..|+++|   .|++
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~Iita--DRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~s---GD~t  216 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITA--DRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGS---GDKT  216 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEe--cCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecC---CCCc
Confidence            345556789999999999999999886  778888886663 3334444   677888888775 44578887   8899


Q ss_pred             EEEEECCCCeEEEeeeC
Q 020756          150 MAFWDYVDGKQLGTTRA  166 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~  166 (321)
                      |++||+.+|+++.++..
T Consensus       217 lr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  217 LRLWDITSGKLLDTCDL  233 (390)
T ss_pred             EEEEecccCCcccccch
Confidence            99999999998866554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.00  E-value=0.0051  Score=56.11  Aligned_cols=201  Identities=14%  Similarity=0.128  Sum_probs=121.8

Q ss_pred             EEEEEcCCcCCCCceeee------ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            7 VQIYACGKDLQSQPLARR------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         7 v~v~~~~~~~~~~~i~~~------~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      ..+|+..+   ++.+...      .||-    .-.||+||++|++. .+|. .++.   |...+|.+  .....+.-++.
T Consensus        30 ~~v~D~~~---g~~~~~~~a~~gRHFyG----Hg~fs~dG~~LytT-End~-~~g~---G~IgVyd~--~~~~~ri~E~~   95 (305)
T PF07433_consen   30 ALVFDCRT---GQLLQRLWAPPGRHFYG----HGVFSPDGRLLYTT-ENDY-ETGR---GVIGVYDA--ARGYRRIGEFP   95 (305)
T ss_pred             EEEEEcCC---CceeeEEcCCCCCEEec----CEEEcCCCCEEEEe-cccc-CCCc---EEEEEEEC--cCCcEEEeEec
Confidence            45666666   4444333      2332    34689999998774 2222 1122   44345544  33333333333


Q ss_pred             -CCCCeEEEEECcCCCEEEEEEcc----------------CCCeEEEEeCC-CceeEE--e----CCcCeeeEEEcCCCC
Q 020756           81 -KEGPVHDVQWSYSGSEFAVVYGF----------------MPASATIFNKK-CRPILE--L----GSGPYNTVRWNPKGK  136 (321)
Q Consensus        81 -~~~~v~~~~wsP~g~~l~~~~g~----------------~~~~i~i~d~~-~~~~~~--~----~~~~~~~~~~sPdG~  136 (321)
                       +.-.-|++.|.|||+.|+++-|.                |...+.+.|.. +..+..  +    +...+..++++++|.
T Consensus        96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen   96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence             22245789999999999997543                33345555553 333332  2    455788899999998


Q ss_pred             eEEEEccCCC----CCcEEEEECCCCeEEEeeeC---------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-c
Q 020756          137 FLCLAGFGNL----PGDMAFWDYVDGKQLGTTRA---------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-N  202 (321)
Q Consensus       137 ~l~~~g~~n~----~g~i~iwD~~~~~~i~~~~~---------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~  202 (321)
                      .++-.-+...    ..-|.+++...  .+..+..         +++-+++++.+|.++++++  ||   .+.+.+||. +
T Consensus       176 V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts--Pr---Gg~~~~~d~~t  248 (305)
T PF07433_consen  176 VAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS--PR---GGRVAVWDAAT  248 (305)
T ss_pred             EEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC--CC---CCEEEEEECCC
Confidence            7766543211    12344555433  2222222         3677899999999988776  44   899999987 6


Q ss_pred             CceeEEeccCceEEEEEecCCCCCCCC
Q 020756          203 GSLFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       203 g~~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      |+++.......++.++-.++. .+++.
T Consensus       249 g~~~~~~~l~D~cGva~~~~~-f~~ss  274 (305)
T PF07433_consen  249 GRLLGSVPLPDACGVAPTDDG-FLVSS  274 (305)
T ss_pred             CCEeeccccCceeeeeecCCc-eEEeC
Confidence            778777788888888877766 34443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.00  E-value=0.0025  Score=68.18  Aligned_cols=133  Identities=11%  Similarity=0.011  Sum_probs=86.6

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CC----------------cCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GS----------------GPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~----------------~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      ++++++|++..+.++ ....+.|.+||.....+..+ +.                ...+.++|+|+|+.|.++..  .++
T Consensus       686 ~gVa~dp~~g~LyVa-d~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~  762 (1057)
T PLN02919        686 WDVCFEPVNEKVYIA-MAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESS  762 (1057)
T ss_pred             eEEEEecCCCeEEEE-ECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCC
Confidence            589999966555554 34467899999865544433 11                12345899999998877764  348


Q ss_pred             cEEEEECCCCeEEEeee-----------------------CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          149 DMAFWDYVDGKQLGTTR-----------------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~-----------------------~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      .|.+||++++.......                       ......++++++|..+++-+      .++.|++||..+..
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs------~N~rIrviD~~tg~  836 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS------YNHKIKKLDPATKR  836 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC------CCCEEEEEECCCCe
Confidence            99999998764221110                       00234689999998666655      48899999997655


Q ss_pred             eEEe----------------ccCceEEEEEecCCCCCC
Q 020756          206 FFKK----------------MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       206 l~~~----------------~~~~~~~~~w~P~~~~~~  227 (321)
                      +...                .......+.+.|++..++
T Consensus       837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence            4211                122566788888875333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.99  E-value=2.2e-05  Score=48.70  Aligned_cols=35  Identities=29%  Similarity=0.705  Sum_probs=31.4

Q ss_pred             eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756          117 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus       117 ~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      .+..+  |...++++.|+|++++|++++   .|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~---~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGS---SDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEE---TTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeC---CCCEEEEEC
Confidence            44555  789999999999999999999   999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.97  E-value=0.0002  Score=69.02  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             ccCCCeEEEEeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEE
Q 020756          102 GFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  174 (321)
Q Consensus       102 g~~~~~i~i~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~w  174 (321)
                      |...+.+.+|++....+..+     |.++++++.|+-+-.+|-+++   .++.+..|+......++.+...  .+..++.
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~---ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG---ADLKVVYILEKEKVIIRIWKEQKPLVSSLCI  152 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC---CceeEEEEecccceeeeeeccCCCccceEEE
Confidence            55567899999866555443     678999999999999999999   9999999999999888887764  7788999


Q ss_pred             ccCCCEEEEEEcCCceeecCcEEEEeecC-cee--EEeccCceEEEEEecC
Q 020756          175 SPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPV  222 (321)
Q Consensus       175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~  222 (321)
                      +|||..+++++        ..|++|++.. +.+  +.+|.+.+..++|--.
T Consensus       153 s~D~~~l~~as--------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  153 SPDGKILLTAS--------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             cCCCCEEEecc--------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            99999999888        4899999954 444  6678888888888776

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.97  E-value=0.00011  Score=74.83  Aligned_cols=126  Identities=13%  Similarity=0.197  Sum_probs=97.5

Q ss_pred             CCEEEEEEccCCCeEEEEeCC--Ccee-EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE-eeeCC--
Q 020756           94 GSEFAVVYGFMPASATIFNKK--CRPI-LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTRAE--  167 (321)
Q Consensus        94 g~~l~~~~g~~~~~i~i~d~~--~~~~-~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~-~~~~~--  167 (321)
                      ...+-+..|.--+.+.+|+..  ..++ ...|.+.+..+.||-||++|++.+   .|..+++|++++.+... +.-+|  
T Consensus       143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S---dDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS---DDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEe---cCcceeeeecccccccCcccccccc
Confidence            334444446666788899874  3344 344899999999999999999999   99999999999987655 33344  


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EEeccC-ceEEEEEecCCCCCCCCc
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFD-KLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~-~~~~~~w~P~~~~~~~~~  230 (321)
                      .+.++.++|+  +|++++      .|.+.++|+.+|..+  +.+|.. .++.+...+....+++..
T Consensus       220 Rvw~~~~~~n--~i~t~g------edctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g  277 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVG------EDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG  277 (967)
T ss_pred             eeEEEEeccc--eeEEec------cceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeec
Confidence            6888999999  889998      699999999988876  555553 677888877777776654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.96  E-value=5.4e-05  Score=68.78  Aligned_cols=137  Identities=12%  Similarity=0.171  Sum_probs=96.8

Q ss_pred             ceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEe-CCcCeeeEEEcC
Q 020756           61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILEL-GSGPYNTVRWNP  133 (321)
Q Consensus        61 ~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~-~~~~~~~~~~sP  133 (321)
                      .+.+-++++.++....+  ..+..|.+.+|.-.+..+..  |...+.|..+|+++.      ..+.+ |...+.++.---
T Consensus       233 sqqv~L~nvetg~~qsf--~sksDVfAlQf~~s~nLv~~--GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq  308 (425)
T KOG2695|consen  233 SQQVLLTNVETGHQQSF--QSKSDVFALQFAGSDNLVFN--GCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQ  308 (425)
T ss_pred             cceeEEEEeeccccccc--ccchhHHHHHhcccCCeeEe--cccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhc
Confidence            34456666666543333  36778888889876654443  788899999999643      44455 777777765544


Q ss_pred             -CCCeEEEEccCCCCCcEEEEECCCCeE---EEeeeCC-C-ee--eEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cc
Q 020756          134 -KGKFLCLAGFGNLPGDMAFWDYVDGKQ---LGTTRAE-C-SV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GS  204 (321)
Q Consensus       134 -dG~~l~~~g~~n~~g~i~iwD~~~~~~---i~~~~~~-~-~~--~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~  204 (321)
                       ++++|+.++   ++|.|.+||++--++   +.+.++| + ..  -+-..+....|++++.      |.-.+||.+. |.
T Consensus       309 ~s~q~LmaS~---M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd------DcytRiWsl~~gh  379 (425)
T KOG2695|consen  309 FSQQKLMASD---MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD------DCYTRIWSLDSGH  379 (425)
T ss_pred             cccceEeecc---CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC------eeEEEEEecccCc
Confidence             578888888   999999999986666   8888887 2 22  2455677777888773      8889999994 77


Q ss_pred             eeEEec
Q 020756          205 LFFKKM  210 (321)
Q Consensus       205 ~l~~~~  210 (321)
                      ++....
T Consensus       380 Ll~tip  385 (425)
T KOG2695|consen  380 LLCTIP  385 (425)
T ss_pred             eeeccC
Confidence            765443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.94  E-value=0.00019  Score=63.94  Aligned_cols=197  Identities=12%  Similarity=0.100  Sum_probs=121.4

Q ss_pred             CceEEEEEcCCcCC---CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--ee
Q 020756            4 PASVQIYACGKDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VP   78 (321)
Q Consensus         4 p~~v~v~~~~~~~~---~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--v~   78 (321)
                      .|.|.+|.......   -.++..+.........+.|++.|+.+++..     ..|..       ..+.........  .-
T Consensus        94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~-----s~G~~-------~~v~~t~~~le~vq~w  161 (339)
T KOG0280|consen   94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSD-----SRGSI-------SGVYETEMVLEKVQTW  161 (339)
T ss_pred             cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEc-----CCCcE-------EEEecceeeeeecccc
Confidence            46777777665210   012333333333466788999999877642     22221       111111111111  11


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-----eCCcCeeeEEEcC-CCCeEEEEccCCCCCcEEE
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-----LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-----~~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~i  152 (321)
                      -.|+-.+-.+.|+-....++.. |..|+.+..||++--..+.     .|...|.+|.=|| ++.+|++++   .|-.|.+
T Consensus       162 k~He~E~Wta~f~~~~pnlvyt-GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs---YDe~i~~  237 (339)
T KOG0280|consen  162 KVHEFEAWTAKFSDKEPNLVYT-GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS---YDECIRV  237 (339)
T ss_pred             cccceeeeeeecccCCCceEEe-cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec---cccceee
Confidence            1366677777777655555554 7889999999997221222     2677888888876 577888888   7789999


Q ss_pred             EECCCC-eEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---c---e--eEEeccCceEEEEEec
Q 020756          153 WDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---S---L--FFKKMFDKLFQAEWKP  221 (321)
Q Consensus       153 wD~~~~-~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---~---~--l~~~~~~~~~~~~w~P  221 (321)
                      ||.++. +.+....- ..+..+.|+|.-.+.+.+.+     .-++++|-+.+-   +   .  .++.|.+-+|...|+-
T Consensus       238 ~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-----Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~  311 (339)
T KOG0280|consen  238 LDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-----MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS  311 (339)
T ss_pred             eehhcccCccccCccccceEEEEecchhhhHHHHHH-----HhcCceEEEecccccchheeeeccccccceeecccccc
Confidence            999864 55544332 38899999997554444444     488999988742   2   1  2556777889999943

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.94  E-value=3.5e-05  Score=47.73  Aligned_cols=37  Identities=30%  Similarity=0.673  Sum_probs=32.7

Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ++++.++.+|  .+.+++|+|++.+|++++.      |+.++|||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~------D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSS------DGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEET------TSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCC------CCEEEEEC
Confidence            3567788877  7999999999999999995      99999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.94  E-value=0.00015  Score=65.86  Aligned_cols=136  Identities=10%  Similarity=0.194  Sum_probs=91.0

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEE---eC-------CcCeeeEEEcCCC-CeEEEEccCCCCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILE---LG-------SGPYNTVRWNPKG-KFLCLAGFGNLPG  148 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~---~~-------~~~~~~~~~sPdG-~~l~~~g~~n~~g  148 (321)
                      |...|+++..+.|+..|+.+   .|-+|.||++. .+.-+.   +.       ..-+++..|+|.- +.++.++   ..|
T Consensus       163 HtyhiNSIS~NsD~Et~lSA---DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS---SKG  236 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSA---DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS---SKG  236 (433)
T ss_pred             ceeEeeeeeecCccceEeec---cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec---CCC
Confidence            67788999999999988874   35589999883 222232   21       2346778999964 4556666   779


Q ss_pred             cEEEEECCCCeE----EEeeeC--------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Ccee--
Q 020756          149 DMAFWDYVDGKQ----LGTTRA--------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF--  206 (321)
Q Consensus       149 ~i~iwD~~~~~~----i~~~~~--------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l--  206 (321)
                      +|++-|++...+    ...++.              ..+.++.||++|+||++-.       -.+|+|||++  .+.+  
T Consensus       237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t  309 (433)
T KOG1354|consen  237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVET  309 (433)
T ss_pred             cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceE
Confidence            999999984311    011111              1556799999999999877       6899999994  2322  


Q ss_pred             EEecc------------Cc---eEEEEEecCCCCCCCC
Q 020756          207 FKKMF------------DK---LFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 ~~~~~------------~~---~~~~~w~P~~~~~~~~  229 (321)
                      +..|.            +.   -..++|+-+...+++.
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG  347 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG  347 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence            22211            11   2457999988888775

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.90  E-value=0.00071  Score=67.80  Aligned_cols=160  Identities=14%  Similarity=0.123  Sum_probs=94.7

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc------
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------  103 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~------  103 (321)
                      ......-||+|+.++++... .+..+.   ....||.++..+.. ..+.  .........|+|||+.+.++...      
T Consensus       351 ~vsspaiSpdG~~vA~v~~~-~~~~~d---~~s~Lwv~~~gg~~-~~lt--~g~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTL-GRGAPD---PASSLWVGPLGGVA-VQVL--EGHSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceECCCCCEEEEEEee-cCCCCC---cceEEEEEeCCCcc-eeee--cCCCCCCceECCCCCceEEEecCcceEEE
Confidence            34577889999999887543 332222   24468888765543 4443  22347889999999988776321      


Q ss_pred             ----CCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEE---EECCCCe-EEEe---eeC-C-C-e
Q 020756          104 ----MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF---WDYVDGK-QLGT---TRA-E-C-S  169 (321)
Q Consensus       104 ----~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i---wD~~~~~-~i~~---~~~-~-~-~  169 (321)
                          ..+.+.+.++++.....-..+.+..+.|||||..|++..    ++.|++   -....|. .+..   +.. . . +
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                112333334433222111145799999999999999975    367877   4544553 1211   111 1 2 4


Q ss_pred             eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      ..+.|..++.++ .++..    .+..+...+++|..
T Consensus       500 ~~l~W~~~~~L~-V~~~~----~~~~v~~v~vDG~~  530 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSD----PEHPVWYVNLDGSN  530 (591)
T ss_pred             ccceEecCCEEE-EEecC----CCCceEEEecCCcc
Confidence            779999999965 44431    24445555556654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.89  E-value=0.0017  Score=60.95  Aligned_cols=182  Identities=15%  Similarity=0.080  Sum_probs=97.3

Q ss_pred             EeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC
Q 020756           35 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  114 (321)
Q Consensus        35 ~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~  114 (321)
                      .|..+|+.|++....         .|..+||.|++......+++-..........++|+++.++.+.  ....+.-.|+.
T Consensus        42 ~ft~dG~kllF~s~~---------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~--~~~~l~~vdL~  110 (386)
T PF14583_consen   42 CFTDDGRKLLFASDF---------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK--NGRSLRRVDLD  110 (386)
T ss_dssp             -B-TTS-EEEEEE-T---------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE--TTTEEEEEETT
T ss_pred             CcCCCCCEEEEEecc---------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE--CCCeEEEEECC
Confidence            689999999996432         2666799999988766665532222334678899999887653  23578888886


Q ss_pred             Cc---eeEEeCCcCeeeEEE--cCCCCeEEEEcc-------------------CCCCCcEEEEECCCCeEEEeeeCC-Ce
Q 020756          115 CR---PILELGSGPYNTVRW--NPKGKFLCLAGF-------------------GNLPGDMAFWDYVDGKQLGTTRAE-CS  169 (321)
Q Consensus       115 ~~---~~~~~~~~~~~~~~~--sPdG~~l~~~g~-------------------~n~~g~i~iwD~~~~~~i~~~~~~-~~  169 (321)
                      +.   .+..+.........|  +.|++.++-.-.                   -+....|.-.|+.+|+....+... .+
T Consensus       111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl  190 (386)
T PF14583_consen  111 TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL  190 (386)
T ss_dssp             T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred             cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence            54   445556655555566  456777655411                   013456777799998766666554 67


Q ss_pred             eeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCceeEE---ecc-CceEEEEEecCCCCCC
Q 020756          170 VTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMF-DKLFQAEWKPVSPDKF  227 (321)
Q Consensus       170 ~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~---~~~-~~~~~~~w~P~~~~~~  227 (321)
                      ..+.+|| |...|+.|---|.-.+|..|.+-+.+|..+..   ... ..+-.=-|.|++..++
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            7899999 47777777766665566666666666654422   211 1233445677765544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.88  E-value=0.0029  Score=56.19  Aligned_cols=145  Identities=18%  Similarity=0.222  Sum_probs=90.1

Q ss_pred             EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEe
Q 020756           34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFN  112 (321)
Q Consensus        34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~ws-P~g~~l~~~~g~~~~~i~i~d  112 (321)
                      +.|.+....|+++     |..+      ..|+.++..+.....+.+.  + ...+.+. ++| .|+++  .. ..+.++|
T Consensus         5 p~~d~~~g~l~~~-----D~~~------~~i~~~~~~~~~~~~~~~~--~-~~G~~~~~~~g-~l~v~--~~-~~~~~~d   66 (246)
T PF08450_consen    5 PVWDPRDGRLYWV-----DIPG------GRIYRVDPDTGEVEVIDLP--G-PNGMAFDRPDG-RLYVA--DS-GGIAVVD   66 (246)
T ss_dssp             EEEETTTTEEEEE-----ETTT------TEEEEEETTTTEEEEEESS--S-EEEEEEECTTS-EEEEE--ET-TCEEEEE
T ss_pred             eEEECCCCEEEEE-----EcCC------CEEEEEECCCCeEEEEecC--C-CceEEEEccCC-EEEEE--Ec-CceEEEe
Confidence            5788866666664     2222      2478888887755444433  2 6677777 665 45554  22 3466669


Q ss_pred             CCCceeEEe--------CCcCeeeEEEcCCCCeEEEEccCC---CC--CcEEEEECCCCeEEEeeeC-CCeeeEEEccCC
Q 020756          113 KKCRPILEL--------GSGPYNTVRWNPKGKFLCLAGFGN---LP--GDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDG  178 (321)
Q Consensus       113 ~~~~~~~~~--------~~~~~~~~~~sPdG~~l~~~g~~n---~~--g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG  178 (321)
                      .....+..+        .....|.+.+.|+|++.++.....   ..  |.|+.++.. ++....... .....++|+|||
T Consensus        67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTS
T ss_pred             cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcc
Confidence            866544433        234578899999999666654211   11  678889987 554333333 366789999999


Q ss_pred             CEEEEEEcCCceeecCcEEEEeec
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++|..+.+     ..+.|..++++
T Consensus       146 ~~lyv~ds-----~~~~i~~~~~~  164 (246)
T PF08450_consen  146 KTLYVADS-----FNGRIWRFDLD  164 (246)
T ss_dssp             SEEEEEET-----TTTEEEEEEEE
T ss_pred             hheeeccc-----ccceeEEEecc
Confidence            99887776     36667777774

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.00031  Score=64.75  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=74.9

Q ss_pred             ecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-E-e--CCcCeeeEEEcCC
Q 020756           59 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-E-L--GSGPYNTVRWNPK  134 (321)
Q Consensus        59 ~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~-~--~~~~~~~~~~sPd  134 (321)
                      |+...+|.....+..-..+.+ .+.++.++..-|+|+.+.+  |+.-+.+..||+++..+. . +  -.+.+..+.-+|.
T Consensus       225 ~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~  301 (412)
T KOG3881|consen  225 YHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT  301 (412)
T ss_pred             ceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccCCccCCcceEEEcCC
Confidence            466667765544433233332 4789999999999998777  566789999999765433 2 3  3678999999999


Q ss_pred             CCeEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756          135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGT  163 (321)
Q Consensus       135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~  163 (321)
                      +++|+++|   +|..|+|+|+++.+++..
T Consensus       302 ~~~las~G---LDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  302 HPVLASCG---LDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             CceEEeec---cceeEEEeecccchhhhh
Confidence            99999999   999999999998766543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.83  E-value=0.00029  Score=65.05  Aligned_cols=96  Identities=14%  Similarity=0.120  Sum_probs=65.3

Q ss_pred             eEEEEeCC-CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee-CC--CeeeEEEccCCCEE
Q 020756          107 SATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYF  181 (321)
Q Consensus       107 ~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~-~~--~~~~~~wSpdG~~l  181 (321)
                      .+.+|... +...-.+ |-..+..+.||||+++|+++.   .|..|++-....--.+.++- +|  .+..++.-++ +.|
T Consensus       133 ~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD---RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~L  208 (390)
T KOG3914|consen  133 SFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD---RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLL  208 (390)
T ss_pred             eeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec---CCceEEEEecCcccchhhhccccHhheeeeeeccC-cee
Confidence            44445443 3333344 567788999999999999998   99999987665433333332 23  5666666554 557


Q ss_pred             EEEEcCCceeecCcEEEEee-cCceeEEeccC
Q 020756          182 MTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD  212 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~  212 (321)
                      ++++      .|+++++||+ +|+++...+..
T Consensus       209 lS~s------GD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  209 LSGS------GDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             eecC------CCCcEEEEecccCCcccccchh
Confidence            8877      4999999999 68777555544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=0.0011  Score=61.26  Aligned_cols=181  Identities=9%  Similarity=0.115  Sum_probs=116.2

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCceeeeec---CCCCCeEEEEECcCCCEEEEEEcc
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPL---RKEGPVHDVQWSYSGSEFAVVYGF  103 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~~~v~l---~~~~~v~~~~wsP~g~~l~~~~g~  103 (321)
                      .++..+.||.+|++|+...   -|.-+       .||.++.  -....+.+.+   .|..-|.+++|.-..+.+..  |.
T Consensus        57 GCiNAlqFS~N~~~L~SGG---DD~~~-------~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S--G~  124 (609)
T KOG4227|consen   57 GCINALQFSHNDRFLASGG---DDMHG-------RVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS--GE  124 (609)
T ss_pred             cccceeeeccCCeEEeecC---Cccee-------eeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec--CC
Confidence            4566788999988876531   11111       1333321  0111122222   25577899999875555444  78


Q ss_pred             CCCeEEEEeCCCceeE-Ee-C---CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC----eEEEeeeCC-CeeeEE
Q 020756          104 MPASATIFNKKCRPIL-EL-G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE-CSVTSE  173 (321)
Q Consensus       104 ~~~~i~i~d~~~~~~~-~~-~---~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~----~~i~~~~~~-~~~~~~  173 (321)
                      .++++.+.|+...... .+ +   .+.|..+.-+|-.+.|++.+   .++.|.|||.+..    +.+...... .-..+.
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            8899999999766443 34 3   35788999999999999888   8999999998754    333333222 556789


Q ss_pred             EccC-CCEEEEEEcCCceeecCcEEEEeecCc--eeEE--------eccCceEEEEEecCCCCCCCCc
Q 020756          174 WSPD-GRYFMTATTAPRLQIDNGIKIFHHNGS--LFFK--------KMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       174 wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~--~l~~--------~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      |.|- -++|+++.+      ..++-+||..-.  .++.        ....+.+.+.|+|.+..+++.+
T Consensus       202 F~P~~P~Li~~~~~------~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  202 FHPETPALILVNSE------TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             ecCCCceeEEeccc------cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence            9996 566666664      888999998432  1211        1122456788999888777653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.74  E-value=0.0018  Score=67.55  Aligned_cols=180  Identities=13%  Similarity=0.242  Sum_probs=107.6

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ..+.+.+-.++..+++....          |  .+.+++........+- ..+..|..++||||++.++++.|.  .++.
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~----------G--~iilvd~et~~~eivg-~vd~GI~aaswS~Dee~l~liT~~--~tll  134 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITAL----------G--DIILVDPETLELEIVG-NVDNGISAASWSPDEELLALITGR--QTLL  134 (1265)
T ss_pred             ceEEEEEecccceEEEEecC----------C--cEEEEcccccceeeee-eccCceEEEeecCCCcEEEEEeCC--cEEE
Confidence            55666666666666664311          2  1333332222111111 246789999999999999999663  3443


Q ss_pred             EEeCCC----------------c--------eeEEeC-----------------------CcCeeeEEEcCCCCeEEEEc
Q 020756          110 IFNKKC----------------R--------PILELG-----------------------SGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus       110 i~d~~~----------------~--------~~~~~~-----------------------~~~~~~~~~sPdG~~l~~~g  142 (321)
                      +-+...                +        .-..|+                       ..+-.+|.|--||.++++..
T Consensus       135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~  214 (1265)
T KOG1920|consen  135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF  214 (1265)
T ss_pred             EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence            332110                0        001121                       11223599999999999965


Q ss_pred             cCC--CCCcEEEEECCCCeEEE--eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee------EEeccC
Q 020756          143 FGN--LPGDMAFWDYVDGKQLG--TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF------FKKMFD  212 (321)
Q Consensus       143 ~~n--~~g~i~iwD~~~~~~i~--~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l------~~~~~~  212 (321)
                      .-.  ....|.|||.+ |.+-.  ......-..++|-|.|..|++--+.+.   |+.|.++.-+|-.-      ...+..
T Consensus       215 ~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s---d~~IvffErNGL~hg~f~l~~p~de~  290 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS---DSDIVFFERNGLRHGEFVLPFPLDEK  290 (1265)
T ss_pred             EeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC---CCcEEEEecCCccccccccCCccccc
Confidence            322  22689999997 43222  112224566999999999998776543   66899999877432      112333


Q ss_pred             ceEEEEEecCCCCCCC
Q 020756          213 KLFQAEWKPVSPDKFG  228 (321)
Q Consensus       213 ~~~~~~w~P~~~~~~~  228 (321)
                      ++.++.|+-++..+.-
T Consensus       291 ~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAV  306 (1265)
T ss_pred             chheeeecCCCCceee
Confidence            5888999988765553

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.72  E-value=0.0033  Score=62.39  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=60.8

Q ss_pred             eEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCC-------------------------------------CC
Q 020756          107 SATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGN-------------------------------------LP  147 (321)
Q Consensus       107 ~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n-------------------------------------~~  147 (321)
                      .+.+.|.... ...++ -.+...-+.++|||+++.++++.+                                     .+
T Consensus       216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g  295 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG  295 (635)
T ss_pred             EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence            4556666543 22333 122334578999999988876311                                     11


Q ss_pred             CcEEEEECCC-----CeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          148 GDMAFWDYVD-----GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       148 g~i~iwD~~~-----~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +.|.+.|..+     .+.+..+.-. ....+.+||||+|++++.-     .++.+.|.|+..
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k  352 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRK  352 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----CCCcEEEEEChh
Confidence            3577788776     3445544443 6777999999999999885     589999999854

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=97.70  E-value=2.6e-05  Score=77.74  Aligned_cols=109  Identities=15%  Similarity=0.227  Sum_probs=91.3

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      +.|...|+++.|...|.++++  |+.|..++||...+. ...+.  |.+.+..++.+-..-+++.++   .|.-|.+|-+
T Consensus       187 lgH~naVyca~fDrtg~~Iit--gsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS---~D~vIrvWrl  261 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIIT--GSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS---NDKVIRVWRL  261 (1113)
T ss_pred             HhhhhheeeeeeccccceEee--cCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc---cCceEEEEec
Confidence            357889999999999999888  677889999997543 44444  788899999998888888888   8889999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .++..+..+.+|  .++.++|||--     +++     .|++++|||..
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~-----sss-----~dgt~~~wd~r  300 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA-----SSS-----DDGTCRIWDAR  300 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc-----cCC-----CCCceEecccc
Confidence            999999988887  69999999975     222     38899999874

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.68  E-value=0.00094  Score=66.96  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=83.8

Q ss_pred             CCeEEEEECcCCCEEEEEEc------cCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCC---------CC
Q 020756           83 GPVHDVQWSYSGSEFAVVYG------FMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGN---------LP  147 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g------~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n---------~~  147 (321)
                      ..+.+.+.||||+.++++..      .....+.+++..+....-+.........|+|||+.|.+..-++         ..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            35789999999999988752      1123566667644432222222377899999999887764221         23


Q ss_pred             CcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee----cCc-ee-----EEeccC-ceEE
Q 020756          148 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH----NGS-LF-----FKKMFD-KLFQ  216 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~----~g~-~l-----~~~~~~-~~~~  216 (321)
                      +.+++.+++.++....+ ...+..+.|||||.+|+...       ++.+.|--+    .|. .+     ...... .+.+
T Consensus       430 gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~-------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        430 GQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII-------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             ceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE-------CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence            46666677655433322 23689999999999999877       455555222    333 11     111222 3578


Q ss_pred             EEEecCCCC
Q 020756          217 AEWKPVSPD  225 (321)
Q Consensus       217 ~~w~P~~~~  225 (321)
                      +.|.++..-
T Consensus       502 l~W~~~~~L  510 (591)
T PRK13616        502 LDWRTGDSL  510 (591)
T ss_pred             ceEecCCEE
Confidence            899998763

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.67  E-value=0.005  Score=54.57  Aligned_cols=119  Identities=14%  Similarity=0.155  Sum_probs=79.2

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      ....+..++|++.+.++-        .+  -...+|-|+..+.....+. -+.++.-....||.....||++  ..|+.+
T Consensus       160 ~~ns~~~snd~~~~~~Vg--------ds--~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~--~Qdg~~  227 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVG--------DS--RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVV--FQDGTC  227 (344)
T ss_pred             ceeeeEEcCCCceEEEec--------CC--CcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEE--ecCCcE
Confidence            355778899999988762        11  1222444444443322222 2345566788999999999995  778999


Q ss_pred             EEEeCCCc--eeEEe------CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756          109 TIFNKKCR--PILEL------GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGT  163 (321)
Q Consensus       109 ~i~d~~~~--~~~~~------~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~~~~~~i~~  163 (321)
                      .|||++..  ++...      |.+.+..+.|+|-|-  +|+++-   .-+.+.+.|+++++....
T Consensus       228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeE
Confidence            99999653  33222      678899999999765  344443   457899999998854433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.65  E-value=0.0001  Score=70.54  Aligned_cols=74  Identities=22%  Similarity=0.392  Sum_probs=62.0

Q ss_pred             EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-C--CeeeEEEcc--CCCEEEEEEcCCceeecC
Q 020756          120 ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSP--DGRYFMTATTAPRLQIDN  194 (321)
Q Consensus       120 ~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~--~~~~~~wSp--dG~~l~t~~s~~rl~~d~  194 (321)
                      +-|.+=||++.|+-+|.+|++++   .|-.+.|||.-..+++..+.. |  +|.++.|-|  +.+.++++.      .|.
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGS---DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk  117 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGS---DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDK  117 (758)
T ss_pred             ccccceecceeecCCCCEEeecC---CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------Ccc
Confidence            34788899999999999999998   899999999988887776654 4  889999988  456666666      499


Q ss_pred             cEEEEeec
Q 020756          195 GIKIFHHN  202 (321)
Q Consensus       195 ~v~iw~~~  202 (321)
                      .|+++|++
T Consensus       118 ~i~lfdl~  125 (758)
T KOG1310|consen  118 LIKLFDLD  125 (758)
T ss_pred             eEEEEecc
Confidence            99999995

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.65  E-value=0.00027  Score=64.31  Aligned_cols=129  Identities=14%  Similarity=0.280  Sum_probs=85.7

Q ss_pred             eeEEEEEcCCCceeeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-------EEeC------
Q 020756           62 SKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-------LELG------  122 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~------~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-------~~~~------  122 (321)
                      .+||.+.+..+.-.+|.+..      ..-|++..|+|....+++. ....|.|+|-|++...+       +...      
T Consensus       187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y-SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r  265 (433)
T KOG1354|consen  187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY-SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR  265 (433)
T ss_pred             eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE-ecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence            45666655444334444431      3568899999976544432 45578999999973211       1111      


Q ss_pred             ------CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC-CCeEEEeeeCC--------------Ce---eeEEEccCC
Q 020756          123 ------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE--------------CS---VTSEWSPDG  178 (321)
Q Consensus       123 ------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~-~~~~i~~~~~~--------------~~---~~~~wSpdG  178 (321)
                            -..+..+.||+.|++|++-.+    -+|++||++ ..+.+.++.-|              ++   ..++||-++
T Consensus       266 sffseiIsSISDvKFs~sGryilsRDy----ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  266 SFFSEIISSISDVKFSHSGRYILSRDY----LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             hhHHHHhhhhhceEEccCCcEEEEecc----ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                  124678999999999999752    579999984 33444443322              22   348999999


Q ss_pred             CEEEEEEcCCceeecCcEEEEee
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      .+++||+      +.|-+++++.
T Consensus       342 ~~v~TGs------y~n~frvf~~  358 (433)
T KOG1354|consen  342 SYVMTGS------YNNVFRVFNL  358 (433)
T ss_pred             ceEeccc------ccceEEEecC
Confidence            9999999      6999999985

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.62  E-value=0.011  Score=55.40  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=71.1

Q ss_pred             eeEEEEEcCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEcc--------CCCeEEEEeCCC-ceeEEeC--Cc-----
Q 020756           62 SKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--------MPASATIFNKKC-RPILELG--SG-----  124 (321)
Q Consensus        62 ~~l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~--------~~~~i~i~d~~~-~~~~~~~--~~-----  124 (321)
                      ..++.|+..... ...++... .|. .+ .||||+.|.++..+        .+..|.+||... +.+.++.  ..     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~-~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF-LPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC-CCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            457788775542 23444432 333 34 99999999998552        456899999954 5665652  22     


Q ss_pred             --CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756          125 --PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  167 (321)
Q Consensus       125 --~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~  167 (321)
                        ....+.+||||++|++..+. -+..|.++|+.+++.+..+.-+
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~-p~~~V~VvD~~~~kvv~ei~vp  147 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFS-PSPAVGVVDLEGKAFVRMMDVP  147 (352)
T ss_pred             cCccceEEECCCCCEEEEecCC-CCCEEEEEECCCCcEEEEEeCC
Confidence              23478999999999988632 2589999999999988877654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=0.0015  Score=67.23  Aligned_cols=176  Identities=11%  Similarity=0.131  Sum_probs=109.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeeccc-CccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~-~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~   78 (321)
                      |.--.||||+...   .+.++..-+.. .....+.=+- .|+.|++... |         |...+|.....-.. ...+.
T Consensus      1184 Gd~r~IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa-D---------GsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHK---EQVVADIPYGSSTLVTALSADLVHGNIIAAGFA-D---------GSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred             CCeeEEEEEeccc---ceeEeecccCCCccceeecccccCCceEEEeec-C---------CceEEeecccCCccccceee
Confidence            3446899999876   33333333321 1222222222 2455544321 1         55556654332221 11222


Q ss_pred             cCCCCC--eEEEEECcCCCE-EEEEEccCCCeEEEEeCCCceeEEe-----CC--c-CeeeEEEcCCCCeEEEEccCCCC
Q 020756           79 LRKEGP--VHDVQWSYSGSE-FAVVYGFMPASATIFNKKCRPILEL-----GS--G-PYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        79 l~~~~~--v~~~~wsP~g~~-l~~~~g~~~~~i~i~d~~~~~~~~~-----~~--~-~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                      ..|...  |..+.+.+.|-- |+.  |..+|.|.+||++.....++     +.  + ...++..+++...|++++   . 
T Consensus      1251 R~h~~~~~Iv~~slq~~G~~elvS--gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs---~- 1324 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVS--GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS---A- 1324 (1387)
T ss_pred             cccCCcccceeEEeecCCCcceee--eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC---c-
Confidence            234443  999999887754 444  68899999999987433222     21  3 378899999999999987   5 


Q ss_pred             CcEEEEECCCCeEEEeeeC---------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          148 GDMAFWDYVDGKQLGTTRA---------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~---------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +.|.|||+. |+.+..+..         ..+++++|+|---++|++.      .|+.|.||....
T Consensus      1325 q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~------~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1325 QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS------ADSTVSIYSCEK 1382 (1387)
T ss_pred             ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc------CCceEEEeecCC
Confidence            899999994 444443332         1567899999988888886      599999998743

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00056  Score=68.13  Aligned_cols=131  Identities=20%  Similarity=0.360  Sum_probs=91.3

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCC------CC------eEEEEccCCCCCc
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPK------GK------FLCLAGFGNLPGD  149 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPd------G~------~l~~~g~~n~~g~  149 (321)
                      -.++.|+|.| .||+  |+ ...+.+.|... +.+..+  |...++.+.|.|-      +.      .|+++.   ..|.
T Consensus        18 ~~A~Dw~~~G-LiAy--gs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD---~~Gr   90 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAY--GS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD---ISGR   90 (1062)
T ss_pred             ccccccCccc-eEEE--ec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc---ccCc
Confidence            4578999988 4555  33 23688888743 344444  7889999999974      22      233333   6799


Q ss_pred             EEEEECCCCeEEEeeeCC--CeeeEEEcc---CCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC--ceEEEEEec
Q 020756          150 MAFWDYVDGKQLGTTRAE--CSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD--KLFQAEWKP  221 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~~--~~~~~~wSp---dG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~--~~~~~~w~P  221 (321)
                      |.+||...+..+..+.++  .+.+++|-+   |.|+++.+-.     ..+.+.+|+. +|+.+.+..+.  .+.++...|
T Consensus        91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh-----~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH-----GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec-----CCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence            999999988888888776  566677754   6777777765     3788999965 78888665554  566688888


Q ss_pred             CCCCCC
Q 020756          222 VSPDKF  227 (321)
Q Consensus       222 ~~~~~~  227 (321)
                      ..+.-+
T Consensus       166 fd~rh~  171 (1062)
T KOG1912|consen  166 FDSRHF  171 (1062)
T ss_pred             CCcceE
Confidence            665444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.55  E-value=0.0058  Score=63.91  Aligned_cols=118  Identities=14%  Similarity=0.192  Sum_probs=81.6

Q ss_pred             CCCCeEE-EEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           81 KEGPVHD-VQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        81 ~~~~v~~-~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      +.+.+.+ -++.-..+...++|+..-+.+..||.+..     ....+.++-+.+++.+|.++.+++|.   ..|.+.+||
T Consensus      1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt---s~G~l~lWD 1223 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT---SRGQLVLWD 1223 (1431)
T ss_pred             CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec---CCceEEEEE
Confidence            4555544 33433222234445566678999998643     12233678899999999999999998   789999999


Q ss_pred             CCCCeEEEeeeCC---CeeeEEEcc---CCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          155 YVDGKQLGTTRAE---CSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       155 ~~~~~~i~~~~~~---~~~~~~wSp---dG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      ++=+..+...+.+   .+..+..+|   .....+++++.    ..|-+.+|++.+..
T Consensus      1224 LRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1224 LRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNNEVSTWNMETGL 1276 (1431)
T ss_pred             eecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCCceeeeecccCc
Confidence            9988888887765   455555555   34566666642    37889999986543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.51  E-value=0.0044  Score=54.90  Aligned_cols=112  Identities=7%  Similarity=-0.021  Sum_probs=78.7

Q ss_pred             cCCCeEEEEeCCCceeEE-eCCc--CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--eEEEeeeCC---CeeeEEE
Q 020756          103 FMPASATIFNKKCRPILE-LGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE---CSVTSEW  174 (321)
Q Consensus       103 ~~~~~i~i~d~~~~~~~~-~~~~--~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--~~i~~~~~~---~~~~~~w  174 (321)
                      ..|.+++++++.+..... .|..  ..+.+.+|||++++++.|   .-..|-+|-++..  ..+.+..++   ...+.+|
T Consensus       135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg---ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~  211 (344)
T KOG4532|consen  135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG---DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF  211 (344)
T ss_pred             cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec---CCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence            557788888876543332 2433  388999999999999998   6678888877643  333323332   4556899


Q ss_pred             ccCCCEEEEEEcCCceeecCcEEEEeec--CceeE------EeccCceEEEEEecCC
Q 020756          175 SPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFF------KKMFDKLFQAEWKPVS  223 (321)
Q Consensus       175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l~------~~~~~~~~~~~w~P~~  223 (321)
                      |.....+|+++      .|+.+.|||+.  +.++.      ..|.+.+..+.|+|-+
T Consensus       212 s~~~~~FAv~~------Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  212 SENDLQFAVVF------QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             ccCcceEEEEe------cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence            99999999999      59999999984  33331      1244578888888744

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.49  E-value=0.00071  Score=66.90  Aligned_cols=140  Identities=16%  Similarity=0.273  Sum_probs=104.5

Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------c-----------eeEEeCCcCeeeEEEcCCCCeE
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------R-----------PILELGSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~-----------~~~~~~~~~~~~~~~sPdG~~l  138 (321)
                      +.+......+++.|+-...++++  |..+|.+++.-+.+       .           +...-|.+.+..+.|+-+.+.|
T Consensus         9 i~iPnnvkL~c~~WNke~gyIAc--gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL   86 (1189)
T KOG2041|consen    9 IGIPNNVKLHCAEWNKESGYIAC--GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL   86 (1189)
T ss_pred             cCCCCCceEEEEEEcccCCeEEe--ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence            44455677899999999989888  67899888885421       1           1112277889999999999998


Q ss_pred             EEEccCCCCCcEEEEECCCCe----EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc--C
Q 020756          139 CLAGFGNLPGDMAFWDYVDGK----QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF--D  212 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~----~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~--~  212 (321)
                      -++.   .+|-|.+|-+-++.    .+..-...-+.+++|..||..|...-      .|+.|.+=.++|..+.-...  .
T Consensus        87 TtSD---t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY------eDGavIVGsvdGNRIwgKeLkg~  157 (1189)
T KOG2041|consen   87 TTSD---TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY------EDGAVIVGSVDGNRIWGKELKGQ  157 (1189)
T ss_pred             cccC---CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE------ccCCEEEEeeccceecchhcchh
Confidence            8887   78999999887663    22222223567899999999999988      59999988888888744333  3


Q ss_pred             ceEEEEEecCCCCCC
Q 020756          213 KLFQAEWKPVSPDKF  227 (321)
Q Consensus       213 ~~~~~~w~P~~~~~~  227 (321)
                      .+..+.|+||...++
T Consensus       158 ~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQAL  172 (1189)
T ss_pred             eccceeecccHHHHH
Confidence            566789999986554

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.47  E-value=0.018  Score=57.34  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE------------EEeeeC-CCeeeEEEccCCCEEEEEEcCCceee
Q 020756          126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ------------LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQI  192 (321)
Q Consensus       126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~------------i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~  192 (321)
                      ...+.+||||+++++++  .+..+|.|.|+.+.+.            +...+- ......+|+++|.-+.+-.      .
T Consensus       323 PHGV~vSPDGkylyVan--klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf------~  394 (635)
T PRK02888        323 PHGVNTSPDGKYFIANG--KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLF------L  394 (635)
T ss_pred             ccceEECCCCCEEEEeC--CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEe------e
Confidence            34689999999999987  3578999999987542            333322 2555679999997444444      6


Q ss_pred             cCcEEEEeec
Q 020756          193 DNGIKIFHHN  202 (321)
Q Consensus       193 d~~v~iw~~~  202 (321)
                      |+.+..|++.
T Consensus       395 dsqv~kwn~~  404 (635)
T PRK02888        395 DSQIVKWNIE  404 (635)
T ss_pred             cceeEEEehH
Confidence            9999999984

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.39  E-value=0.027  Score=52.97  Aligned_cols=150  Identities=15%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-CCeEEEEECcCCCEEEEEEccC---CCe
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFM---PAS  107 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~-~~v~~~~wsP~g~~l~~~~g~~---~~~  107 (321)
                      -.+.+||....+++.+...-  ...   -...+|.++.+|.....+.-..+ ..+..=-|.|||..|.......   +.-
T Consensus       191 gH~~fsP~dp~li~fCHEGp--w~~---Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~  265 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGP--WDL---VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW  265 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S---TTT---SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred             cCcccCCCCCCEEEEeccCC--cce---eceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence            57888998777777765321  111   12358999999976655542222 3444556899999888753222   224


Q ss_pred             EEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCC-------------CCCcEEEEECCCCeEEEeeeC-------
Q 020756          108 ATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGN-------------LPGDMAFWDYVDGKQLGTTRA-------  166 (321)
Q Consensus       108 i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n-------------~~g~i~iwD~~~~~~i~~~~~-------  166 (321)
                      |.-+|..+.....+ .......+--|+||++++--|...             .+.-|++++++.+.......+       
T Consensus       266 i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~  345 (386)
T PF14583_consen  266 IAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVL  345 (386)
T ss_dssp             EEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------B
T ss_pred             EEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceee
Confidence            55567755433333 223456677789999987755211             123677888887754322111       


Q ss_pred             --C---CeeeEEEccCCCEEEEEEc
Q 020756          167 --E---CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       167 --~---~~~~~~wSpdG~~l~t~~s  186 (321)
                        +   .-....|||||++++..+.
T Consensus       346 ~~~~q~~hPhp~FSPDgk~VlF~Sd  370 (386)
T PF14583_consen  346 DGDRQVTHPHPSFSPDGKWVLFRSD  370 (386)
T ss_dssp             TTBSSTT----EE-TTSSEEEEEE-
T ss_pred             cCCCccCCCCCccCCCCCEEEEECC
Confidence              1   1234899999999999996

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.33  E-value=0.03  Score=50.19  Aligned_cols=143  Identities=16%  Similarity=0.220  Sum_probs=90.1

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      +.....+|++|+.++++..         ..+...|+.....+......   ....+....|+++|...++..+  +....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~---------~~~~~~L~~~~~~~~~~~~~---~g~~l~~PS~d~~g~~W~v~~~--~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSE---------GDGGRSLYVGPAGGPVRPVL---TGGSLTRPSWDPDGWVWTVDDG--SGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEE---------cCCCCEEEEEcCCCcceeec---cCCccccccccCCCCEEEEEcC--CCceE
Confidence            6778899999999988741         11444577776655432222   3447888999999887777533  33333


Q ss_pred             EE-e-CCCce-eEEe---CCc-CeeeEEEcCCCCeEEEEccCCCCCcEEEEECC---CC--eEE----Eee--eCCCeee
Q 020756          110 IF-N-KKCRP-ILEL---GSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG--KQL----GTT--RAECSVT  171 (321)
Q Consensus       110 i~-d-~~~~~-~~~~---~~~-~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~---~~--~~i----~~~--~~~~~~~  171 (321)
                      ++ + ..+.. ...+   ... .|..+.+||||..+++....+.++.|++--+.   .+  ..+    ...  ....++.
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            33 2 22221 1111   222 89999999999999887644456788876433   22  111    111  1226778


Q ss_pred             EEEccCCCEEEEEEc
Q 020756          172 SEWSPDGRYFMTATT  186 (321)
Q Consensus       172 ~~wSpdG~~l~t~~s  186 (321)
                      +.|.+++.+++.+..
T Consensus       171 v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  171 VAWSDDSTLVVLGRS  185 (253)
T ss_pred             eeecCCCEEEEEeCC
Confidence            999999998887775

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.12  Score=49.32  Aligned_cols=203  Identities=15%  Similarity=0.152  Sum_probs=127.7

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-C
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-G   83 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~-~   83 (321)
                      +.+.+++...   ........++. ....+.-+++|..+++....    .+       .+..++.. .........-. .
T Consensus        11 ~~~~v~~~~~---~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~----~~-------~~~~~~~~-~n~~~~~~~~g~~   74 (381)
T COG3391          11 ADVSVINTGT---NKVTAAISLGR-GPGGVAVNPDGTQVYVANSG----SN-------DVSVIDAT-SNTVTQSLSVGGV   74 (381)
T ss_pred             CceEEEeecc---cEEEEEeecCC-CCceeEEcCccCEEEEEeec----Cc-------eeeecccc-cceeeeeccCCCc
Confidence            3345555544   34444444443 66677788888888775211    00       22333222 11111111111 2


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CCc-CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~~-~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      .-..+..++.+..+.+.. .....+.+.|.....+... ..+ .-..+.++|+|+.+.++..++.++.+.+.|..+++.+
T Consensus        75 ~p~~i~v~~~~~~vyv~~-~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTT-GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEec-CCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            335678888888777653 3356899999765544333 211 4457999999999998875434689999999988877


Q ss_pred             EeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-------eccCceEEEEEecCCCCCCCC
Q 020756          162 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-------KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       162 ~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-------~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .+.... ....+.++|+|..+..+..     .++.+.+.+.++..+..       .....-+.+.++|+...+|-.
T Consensus       154 ~~~~vG~~P~~~a~~p~g~~vyv~~~-----~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         154 ATIPVGNTPTGVAVDPDGNKVYVTNS-----DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             EEEecCCCcceEEECCCCCeEEEEec-----CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence            765443 3478999999998887774     48999999987776653       122345778999998877754

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.0047  Score=61.96  Aligned_cols=98  Identities=15%  Similarity=0.239  Sum_probs=71.0

Q ss_pred             CcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC-CcCeeeEEEcCC-----CCeEEEEccCCCCCcEEEEECC---CCeE
Q 020756           91 SYSGSEFAVVYGFMPASATIFNKK-CRPILELG-SGPYNTVRWNPK-----GKFLCLAGFGNLPGDMAFWDYV---DGKQ  160 (321)
Q Consensus        91 sP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~-~~~~~~~~~sPd-----G~~l~~~g~~n~~g~i~iwD~~---~~~~  160 (321)
                      .-+|.++++|  .+||++.|..+- .+..+++. ..++.+++++||     .+.++++|   ..| +.++..+   +...
T Consensus        80 ~~~Gey~asC--S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~~  153 (846)
T KOG2066|consen   80 ILEGEYVASC--SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKDS  153 (846)
T ss_pred             ccCCceEEEe--cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecC---cce-EEEehhhhhcCccc
Confidence            5579999997  779999998773 33444342 678999999998     56788888   777 7776533   2222


Q ss_pred             E-EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          161 L-GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       161 i-~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      + ..-....+.++.|  .|.+||.+.       |-++++||...
T Consensus       154 v~l~~~eG~I~~i~W--~g~lIAWan-------d~Gv~vyd~~~  188 (846)
T KOG2066|consen  154 VVLSEGEGPIHSIKW--RGNLIAWAN-------DDGVKVYDTPT  188 (846)
T ss_pred             eeeecCccceEEEEe--cCcEEEEec-------CCCcEEEeccc
Confidence            3 2222237888999  688999999       99999999843

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.0064  Score=54.44  Aligned_cols=105  Identities=18%  Similarity=0.288  Sum_probs=73.9

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeCCCc-eeEEe----CCcCeeeEEEcCCCCeEEEE--ccCCCCCcEEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCR-PILEL----GSGPYNTVRWNPKGKFLCLA--GFGNLPGDMAF  152 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~-~~~~~----~~~~~~~~~~sPdG~~l~~~--g~~n~~g~i~i  152 (321)
                      -....|++.++|....-++. ...|+ -..+||..+. ....+    +......=.|||||++|..+  +|.+..|-|-|
T Consensus        66 lpaR~Hgi~~~p~~~ravaf-ARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv  144 (366)
T COG3490          66 LPARGHGIAFHPALPRAVAF-ARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV  144 (366)
T ss_pred             cccccCCeecCCCCcceEEE-EecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE
Confidence            34677899999976543332 35677 5678998543 22232    22233445899999999886  44445789999


Q ss_pred             EECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756          153 WDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       153 wD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s  186 (321)
                      ||.+.+ ..+..+..+  ....+.|.+||+.|+.+..
T Consensus       145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             EecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            998755 677777776  5678999999999998764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.00087  Score=67.42  Aligned_cols=111  Identities=19%  Similarity=0.234  Sum_probs=80.0

Q ss_pred             EEEEECcCCCEEEEEE--ccCCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           86 HDVQWSYSGSEFAVVY--GFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~--g~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      +-..|+|.--.|++++  ....|.++||--.+++-... -.-.+.++.|+|.--.|+.+=   ..|.+.||...+.+.-+
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw---e~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGW---EMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhcc---ccceeEEEecCCceeee
Confidence            3468999999999875  33456899996666655544 233456799999654444443   45899999987665444


Q ss_pred             eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Cce
Q 020756          163 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL  205 (321)
Q Consensus       163 ~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~  205 (321)
                      ....|  .+..+.|||+|..++++..      -+.+.+|.++  |+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~------~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDN------PGSVHLWRYDVIGEI  136 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCC------CceeEEEEeeecccc
Confidence            44334  7888999999999999984      7789999886  553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.15  Score=48.47  Aligned_cols=201  Identities=12%  Similarity=0.171  Sum_probs=127.4

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecCCCCC
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGP   84 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~~~~~   84 (321)
                      .|.+.+...   ...+....... ....+.++++|.++.+.-..     +    +...+..++........ +... ..|
T Consensus        97 ~v~vid~~~---~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~-----~----~~~~vsvid~~t~~~~~~~~vG-~~P  162 (381)
T COG3391          97 TVSVIDTAT---NTVLGSIPVGL-GPVGLAVDPDGKYVYVANAG-----N----GNNTVSVIDAATNKVTATIPVG-NTP  162 (381)
T ss_pred             eEEEEcCcc---cceeeEeeecc-CCceEEECCCCCEEEEEecc-----c----CCceEEEEeCCCCeEEEEEecC-CCc
Confidence            455555444   34444555444 77789999999999885210     0    23446666665543222 2222 235


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE------eC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~------~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                       ..++++|+|..+.++. ..+..+.++|..+..+..      .. ...-..+.++|+|.++.+....+.++.+...|..+
T Consensus       163 -~~~a~~p~g~~vyv~~-~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         163 -TGVAVDPDGNKVYVTN-SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             -ceEEECCCCCeEEEEe-cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence             8999999999888874 446799999987776653      22 12235689999999888876544557899999988


Q ss_pred             CeEEEe-eeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-e-c----cCceEEEEEecCCCCCC
Q 020756          158 GKQLGT-TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-K-M----FDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       158 ~~~i~~-~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~-~----~~~~~~~~w~P~~~~~~  227 (321)
                      +..... ....  ....+..+|+|.++....+     ..+.+.+-|.....+.. . .    ....+.+.+.+.....+
T Consensus       241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-----~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (381)
T COG3391         241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-----QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYDTNY  314 (381)
T ss_pred             ceEEEeccccccCCCCceeECCCCCEEEEEec-----CCCeEEEEeCCCCceeeeecccccccccceeccceeeccccc
Confidence            866654 2211  2456899999999998875     25778887775443322 1 1    11355666666543333

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.27  Score=47.09  Aligned_cols=198  Identities=11%  Similarity=0.048  Sum_probs=107.0

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee--eeecCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~--~v~l~~~   82 (321)
                      ..|+|+++.+   ++.+.. .+-......+.|.++|+.+++....+...+..+. -...+|+..+......  .+--...
T Consensus       150 ~~l~v~Dl~t---g~~l~d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~-~~~~v~~~~~gt~~~~d~lvfe~~~  224 (414)
T PF02897_consen  150 YTLRVFDLET---GKFLPD-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG-YPRQVYRHKLGTPQSEDELVFEEPD  224 (414)
T ss_dssp             EEEEEEETTT---TEEEEE-EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCG-CCEEEEEEETTS-GGG-EEEEC-TT
T ss_pred             EEEEEEECCC---CcCcCC-cccccccceEEEeCCCCEEEEEEeCcccccccCC-CCcEEEEEECCCChHhCeeEEeecC
Confidence            3588888888   554432 2222222239999999998886422211100111 1234777776555433  2221222


Q ss_pred             -CC-eEEEEECcCCCEEEEEEc-cCC-CeEEEEeCCCc-----eeEEe--CC-cCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           83 -GP-VHDVQWSYSGSEFAVVYG-FMP-ASATIFNKKCR-----PILEL--GS-GPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        83 -~~-v~~~~wsP~g~~l~~~~g-~~~-~~i~i~d~~~~-----~~~~~--~~-~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                       .- ..++.+++||+++++... ... ..+.+.|+...     ....+  .. +....+... .+.+++.+..+...+.|
T Consensus       225 ~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l  303 (414)
T PF02897_consen  225 EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRL  303 (414)
T ss_dssp             CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EE
T ss_pred             CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEE
Confidence             23 568999999998887543 333 46777788542     33333  22 333444444 45566666533346788


Q ss_pred             EEEECCCCe----EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEecc
Q 020756          151 AFWDYVDGK----QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMF  211 (321)
Q Consensus       151 ~iwD~~~~~----~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~~  211 (321)
                      .-.++.+..    ....+.. ..+.-..++..+.+|+....   ..+...|+++++. +........
T Consensus       304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~v~~~~~~~~~~~~~~  367 (414)
T PF02897_consen  304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR---ENGSSRLRVYDLDDGKESREIPL  367 (414)
T ss_dssp             EEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE---ETTEEEEEEEETT-TEEEEEEES
T ss_pred             EEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE---ECCccEEEEEECCCCcEEeeecC
Confidence            888888664    2222332 24455577778888887763   1123458889988 776655444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.12  E-value=0.0052  Score=56.10  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee--EEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~--~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      .|.+.+.+..|.|....|..  |..+..+.+||+-+..-  ..+  |...+..+.+-+.-+.|.+++   .||.|.+||+
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~m  269 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNM  269 (404)
T ss_pred             CcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEec
Confidence            47899999999998877777  57788999999955422  222  778888999999999999999   9999999998


Q ss_pred             CC
Q 020756          156 VD  157 (321)
Q Consensus       156 ~~  157 (321)
                      +.
T Consensus       270 n~  271 (404)
T KOG1409|consen  270 NV  271 (404)
T ss_pred             cc
Confidence            75

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.11  E-value=0.029  Score=53.76  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeE-EEEECcCCCEEEEEEccC-------
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH-DVQWSYSGSEFAVVYGFM-------  104 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~-~~~wsP~g~~l~~~~g~~-------  104 (321)
                      .+.+||+|+++++..+    ..|.-.+   .|+.+++..+....-.+  ...-. .+.|.+||+.|+...-..       
T Consensus       128 ~~~~Spdg~~la~~~s----~~G~e~~---~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLS----DGGSEWY---TLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEETTTSSEEEEEEE----ETTSSEE---EEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred             eeeECCCCCEEEEEec----CCCCceE---EEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccC
Confidence            4678999999999753    3343322   47888886652211111  12222 399999999887764222       


Q ss_pred             --CCeEEEEeCCCc-----eeEEeCC-cC-eeeEEEcCCCCeEEEEccCCCC-CcEEEEECCCC
Q 020756          105 --PASATIFNKKCR-----PILELGS-GP-YNTVRWNPKGKFLCLAGFGNLP-GDMAFWDYVDG  158 (321)
Q Consensus       105 --~~~i~i~d~~~~-----~~~~~~~-~~-~~~~~~sPdG~~l~~~g~~n~~-g~i~iwD~~~~  158 (321)
                        +..|.+|.+...     .++.-.. .. ...+..++||++|++....... ..+++.|+..+
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              456888888543     2333322 22 5678999999999886544445 68999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0026  Score=62.25  Aligned_cols=89  Identities=15%  Similarity=0.234  Sum_probs=69.3

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCee-eEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~-~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|.-+.|+|.-..||+.  ...+.+.++-+....+-++  +...+. +++|.|||++|+++=   .||+|.+.|+.++.
T Consensus        21 ~~i~~~ewnP~~dLiA~~--t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~---kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATR--TEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGF---KDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhhee--ccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEe---cCCeEEEEEccCCC
Confidence            456789999999999985  6677888877766556555  455555 999999999999986   78999999999998


Q ss_pred             EEEeeeC---CCeeeEEEcc
Q 020756          160 QLGTTRA---ECSVTSEWSP  176 (321)
Q Consensus       160 ~i~~~~~---~~~~~~~wSp  176 (321)
                      .+..+..   ..++..-|++
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            7776322   2677778863

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.02  E-value=0.11  Score=46.34  Aligned_cols=177  Identities=14%  Similarity=0.138  Sum_probs=94.5

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      .+...+.|+|+.+.|.++.    |..       ..|+.++..|.-.+.+++...+..-++++--+|.+ ++. ...++.+
T Consensus        22 ~e~SGLTy~pd~~tLfaV~----d~~-------~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~-vl~-~Er~~~L   88 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQ----DEP-------GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRY-VLS-EERDQRL   88 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEE----TTT-------TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEE-EEE-ETTTTEE
T ss_pred             CCccccEEcCCCCeEEEEE----CCC-------CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEE-EEE-EcCCCcE
Confidence            3567899999988877763    222       23788888888778888877778889999877744 443 3557789


Q ss_pred             EEEeCC--Cc-----eeE--Ee-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC--CCCeE-EEe--------
Q 020756          109 TIFNKK--CR-----PIL--EL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQ-LGT--------  163 (321)
Q Consensus       109 ~i~d~~--~~-----~~~--~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~--~~~~~-i~~--------  163 (321)
                      .++++.  +.     .+.  .+     ++..+..++|.|.++.|+++--.+ ...|+-++.  ..... +..        
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~~~~~~~  167 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQDLDDDK  167 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeecccccccccc
Confidence            888772  11     111  22     234578899999887777764111 123444443  11111 111        


Q ss_pred             eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc-----------CceEEEEEecCCC
Q 020756          164 TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-----------DKLFQAEWKPVSP  224 (321)
Q Consensus       164 ~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~-----------~~~~~~~w~P~~~  224 (321)
                      ......+.++++|...+|+.-+.     ....+.++|.+|+.+.....           ..--.+++.+++.
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~-----es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~  234 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSD-----ESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN  234 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEET-----TTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred             ceeccccceEEcCCCCeEEEEEC-----CCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence            11125677899997554544443     46778888888886632211           2345677777653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.01  E-value=0.031  Score=58.75  Aligned_cols=115  Identities=14%  Similarity=0.146  Sum_probs=78.3

Q ss_pred             eecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--------eeE--Ee-CCcCee-eEEEcC-CCC-eEEEE
Q 020756           77 VPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--------PIL--EL-GSGPYN-TVRWNP-KGK-FLCLA  141 (321)
Q Consensus        77 v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--------~~~--~~-~~~~~~-~~~~sP-dG~-~l~~~  141 (321)
                      .+.. ....+..+...+.|+.||+.  ..||.+.+++++-.        +..  .. ..+.+. ..+|.- .+. .|+.+
T Consensus      1092 ltys~~~sr~~~vt~~~~~~~~Av~--t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1092 LTYSPEGSRVEKVTMCGNGDQFAVS--TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred             EEEeccCCceEEEEeccCCCeEEEE--cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE
Confidence            3334 46788899999999999995  77999999987431        111  11 122222 233333 234 44445


Q ss_pred             ccCCCCCcEEEEECCCCeEEE----eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          142 GFGNLPGDMAFWDYVDGKQLG----TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~----~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .   ..+.|..||+.....+-    ...+..+++++.+|.+.+++.|++      .+.+.+||+.
T Consensus      1170 T---~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts------~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1170 T---DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS------RGQLVLWDLR 1225 (1431)
T ss_pred             E---eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC------CceEEEEEee
Confidence            4   56889999998764332    333448999999999999999997      7789999984

>PRK10115 protease 2; Provisional

Probab=96.99  E-value=0.096  Score=53.79  Aligned_cols=115  Identities=9%  Similarity=0.055  Sum_probs=72.1

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc----CCCe
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF----MPAS  107 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~----~~~~  107 (321)
                      ..+.|||+|++|++.    .|..|.-.+   .|+.++..++....-.+  .+.-..++|++|++.|++..-.    .+..
T Consensus       130 ~~~~~Spdg~~la~~----~d~~G~E~~---~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~  200 (686)
T PRK10115        130 GGMAITPDNTIMALA----EDFLSRRQY---GIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQ  200 (686)
T ss_pred             eEEEECCCCCEEEEE----ecCCCcEEE---EEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence            357899999999887    445555443   47888886552111111  1222569999999988776421    3347


Q ss_pred             EEEEeCCCc-----eeEEeCCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEEC
Q 020756          108 ATIFNKKCR-----PILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus       108 i~i~d~~~~-----~~~~~~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      +.++++.+.     .++.-.........|.+ |++++++....+.++.+.+|+.
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            888888543     23332223333334444 9999888766666788999994

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.0089  Score=54.71  Aligned_cols=124  Identities=14%  Similarity=0.165  Sum_probs=80.9

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccC
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFM  104 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~~~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~  104 (321)
                      +.|+..+.|.-.+..+..-+.     +     |+...+.+..  .|...+..-+-|...|++++.-. ++++|.+  .+|
T Consensus       252 ksDVfAlQf~~s~nLv~~GcR-----n-----geI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~Lma--S~M  319 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCR-----N-----GEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMA--SDM  319 (425)
T ss_pred             chhHHHHHhcccCCeeEeccc-----C-----CcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEee--ccC
Confidence            456666666665555444321     1     3322233322  23345555667888999988876 5555555  589


Q ss_pred             CCeEEEEeCCC----ceeEEeCCcCeeeEE-----EcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756          105 PASATIFNKKC----RPILELGSGPYNTVR-----WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  167 (321)
Q Consensus       105 ~~~i~i~d~~~----~~~~~~~~~~~~~~~-----~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~  167 (321)
                      +++|++||++.    +.+.+. .+++|..+     ..|...+|+.+|   .|...+||.++++.++.++.-+
T Consensus       320 ~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~G---dDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  320 TGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVG---DDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             cCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEcc---CeeEEEEEecccCceeeccCCC
Confidence            99999999853    224444 45555544     445667888888   8999999999999999987765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.91  E-value=0.0047  Score=61.48  Aligned_cols=146  Identities=18%  Similarity=0.269  Sum_probs=97.9

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC--CCeEEEEECcCCC--EEEEEEccCCCeE
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--GPVHDVQWSYSGS--EFAVVYGFMPASA  108 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~--~~v~~~~wsP~g~--~l~~~~g~~~~~i  108 (321)
                      .+.-+|.|+-+++.          +.+|   ||.++++.......-+.|-  -.|-+++|||...  +-+|  ...+.+.
T Consensus        29 a~si~p~grdi~lA----------sr~g---l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiV--sts~qka   93 (1081)
T KOG0309|consen   29 AVSINPSGRDIVLA----------SRQG---LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIV--STSNQKA   93 (1081)
T ss_pred             ceeeccccchhhhh----------hhcC---eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEE--ecCcchh
Confidence            45567888877653          2233   7888887665554444543  4578999998654  4444  3556678


Q ss_pred             EEEeCC--CceeEEe----CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEECCCC-eEEEeeeC--CCeeeEEEccCC
Q 020756          109 TIFNKK--CRPILEL----GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA--ECSVTSEWSPDG  178 (321)
Q Consensus       109 ~i~d~~--~~~~~~~----~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~--~~~~~~~wSpdG  178 (321)
                      .+|++.  .....+|    |...+..+.|+|+-. .+++++   .+..+..||+++- ..+..+..  ...+++.|+-..
T Consensus        94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs---vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen   94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS---VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc---ccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence            889873  2222233    567788999999876 456666   8899999999875 44554443  267789999854


Q ss_pred             CEEEEEEcCCceeecCcEEEEeec
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      -.++..+.      .+.+.|||..
T Consensus       171 p~vlassh------g~~i~vwd~r  188 (1081)
T KOG0309|consen  171 PNVLASSH------GNDIFVWDLR  188 (1081)
T ss_pred             cchhhhcc------CCceEEEecc
Confidence            44554442      8899999983

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.051  Score=54.84  Aligned_cols=136  Identities=14%  Similarity=0.302  Sum_probs=89.0

Q ss_pred             CCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcC-----CCEEEEEEccCCCeEEEE
Q 020756           37 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS-----GSEFAVVYGFMPASATIF  111 (321)
Q Consensus        37 sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~-----g~~l~~~~g~~~~~i~i~  111 (321)
                      +.+|.|++.++. |         |...+  ...... ....+.+-..++..++++|+     .++|++  |++.| +.++
T Consensus        80 ~~~Gey~asCS~-D---------Gkv~I--~sl~~~-~~~~~~df~rpiksial~Pd~~~~~sk~fv~--GG~ag-lvL~  143 (846)
T KOG2066|consen   80 ILEGEYVASCSD-D---------GKVVI--GSLFTD-DEITQYDFKRPIKSIALHPDFSRQQSKQFVS--GGMAG-LVLS  143 (846)
T ss_pred             ccCCceEEEecC-C---------CcEEE--eeccCC-ccceeEecCCcceeEEeccchhhhhhhheee--cCcce-EEEe
Confidence            567888877631 1         22222  222222 22333455689999999998     445665  67766 8888


Q ss_pred             eCC--Cc--ee-EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--------CeeeEEEccCC
Q 020756          112 NKK--CR--PI-LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDG  178 (321)
Q Consensus       112 d~~--~~--~~-~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--------~~~~~~wSpdG  178 (321)
                      ..+  ++  .+ ..-+.+++.++.|.  |++||.+.    |-.|.|||+.+++.++.++-+        ....+.|.++.
T Consensus       144 er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan----d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~  217 (846)
T KOG2066|consen  144 ERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN----DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED  217 (846)
T ss_pred             hhhhhcCccceeeecCccceEEEEec--CcEEEEec----CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC
Confidence            653  11  22 22268999999997  99999995    446999999999888776643        22348999998


Q ss_pred             CEEEEEEcCCceeecCcEEEEeec
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++++--+        .+|+|..+.
T Consensus       218 ~LVIGW~--------d~v~i~~I~  233 (846)
T KOG2066|consen  218 RLVIGWG--------DSVKICSIK  233 (846)
T ss_pred             eEEEecC--------CeEEEEEEe
Confidence            8665433        356666664

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.90  E-value=0.0033  Score=67.98  Aligned_cols=114  Identities=13%  Similarity=0.269  Sum_probs=90.4

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC-C-
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G-  158 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~-~-  158 (321)
                      ..|..+.|+-+|..|.++  ..|+.+.+|...-+++...  |+...+.++|-  |..++++|..+.++++.+||..- + 
T Consensus      2252 s~vtr~~f~~qGnk~~i~--d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIV--DGDGDLSLWQASPKPYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPM 2327 (2439)
T ss_pred             chhhhhhhcccCCceeee--ccCCceeecccCCcceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcc
Confidence            567788999999999996  4578999999987777766  66667777776  48888888777889999999542 2 


Q ss_pred             -eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          159 -KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       159 -~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                       .++.+-..+.++.+++-|..+.|++++      .++.++|||+..+.+
T Consensus      2328 ~s~v~~~H~~gaT~l~~~P~~qllisgg------r~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2328 NSLVHTCHDGGATVLAYAPKHQLLISGG------RKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             cceeeeecCCCceEEEEcCcceEEEecC------CcCcEEEeehHHHHH
Confidence             455544344899999999999999999      599999999965443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=96.88  E-value=0.0035  Score=55.26  Aligned_cols=71  Identities=14%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ..|+.++=+|..++++++ |..++.+.+||.+..  +...+  |+.+++.+.|+| ++..|++++   .+|.++-||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~c-gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s---edGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCC-GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS---EDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEE-ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec---CCCcEEEEcCCC
Confidence            458899999988888777 788999999999754  33333  899999999999 678999998   899999999864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.81  E-value=0.0023  Score=60.77  Aligned_cols=141  Identities=15%  Similarity=0.171  Sum_probs=89.9

Q ss_pred             CCCceEEEEEcCCcCCC------Cceeeee---cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC
Q 020756            2 GSPASVQIYACGKDLQS------QPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT   72 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~------~~i~~~~---~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~   72 (321)
                      |.|..+|||+.+.....      ...+...   -+.+.+..+.+|.+|.-|++..            ....+|+......
T Consensus       301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY------------nDe~IYLF~~~~~  368 (559)
T KOG1334|consen  301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY------------NDEDIYLFNKSMG  368 (559)
T ss_pred             ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee------------cccceEEeccccc
Confidence            67888999999874200      1112222   2345666788898887776642            2333565533221


Q ss_pred             c-------------eeeeecCC--CCCeEEEEE-CcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcC
Q 020756           73 H-------------EGLVPLRK--EGPVHDVQW-SYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNP  133 (321)
Q Consensus        73 ~-------------~~~v~l~~--~~~v~~~~w-sP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sP  133 (321)
                      .             ..++-..|  ...|..+-| -|...+++.  |..-|.|.||+.++..+..+   ...-||||.=+|
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence            1             11111122  235667776 465555444  66667999999987766555   345899999999


Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCe
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      .--.||++|   .+..|+||-..+-+
T Consensus       447 ~~PvLAsSG---id~DVKIWTP~~~e  469 (559)
T KOG1334|consen  447 HLPVLASSG---IDHDVKIWTPLTAE  469 (559)
T ss_pred             CCchhhccC---CccceeeecCCccc
Confidence            999999999   99999999874443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.73  E-value=0.041  Score=55.38  Aligned_cols=130  Identities=12%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcC----------CCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEE
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYS----------GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVR  130 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~----------g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~  130 (321)
                      +..++...-+.-+.--.|...|+.+.|.|-          ...+.++.++..|+|.+||.... .+..+  +..++..+.
T Consensus        37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~  116 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC  116 (1062)
T ss_pred             EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence            455554433221211236788999999762          23455555777889999998543 33333  566777776


Q ss_pred             EcC---CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEee
Q 020756          131 WNP---KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       131 ~sP---dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      |-|   +.+.++++-.  ....|-+|+..+|+++=.....  ...++.+.| |.+++..-++      .+.+.+.++
T Consensus       117 W~~~rd~Srd~LlaIh--~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s------~g~vl~~~~  185 (1062)
T KOG1912|consen  117 WVPARDDSRDVLLAIH--GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS------KGFVLSCKD  185 (1062)
T ss_pred             eeeccCcchheeEEec--CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc------CceEEEEec
Confidence            665   5545444432  3378999999999887665553  344588888 7788777764      666666655

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=96.71  E-value=0.001  Score=66.87  Aligned_cols=93  Identities=11%  Similarity=0.227  Sum_probs=83.3

Q ss_pred             CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756          122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      |...|.|..|.-.|++|++++   .|.-++||.+++..++.+..+|  .++.++.+.+.-++++++.      |.-|++|
T Consensus       189 H~naVyca~fDrtg~~Iitgs---dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~------D~vIrvW  259 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTGRYIITGS---DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN------DKVIRVW  259 (1113)
T ss_pred             hhhheeeeeeccccceEeecC---ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc------CceEEEE
Confidence            667789999999999999998   8999999999999999999888  7999999999999999984      9999999


Q ss_pred             ee-cCcee--EEeccCceEEEEEecCC
Q 020756          200 HH-NGSLF--FKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       200 ~~-~g~~l--~~~~~~~~~~~~w~P~~  223 (321)
                      -+ +|..+  ..+|.+.|..++|+|..
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~  286 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA  286 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc
Confidence            98 45554  77899999999999976

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.66  E-value=0.00087  Score=67.77  Aligned_cols=189  Identities=12%  Similarity=0.152  Sum_probs=119.5

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      -|.|++|++.+   |......+-+++-...+.-+.+|..++..+...     .   -...||.+...++  ..   +...
T Consensus      1122 ~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-----~---PlsaLW~~~s~~~--~~---Hsf~ 1185 (1516)
T KOG1832|consen 1122 AGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-----S---PLSALWDASSTGG--PR---HSFD 1185 (1516)
T ss_pred             cceEEEEEccC---ccccccccccccccccccccCCcceeeeecccc-----C---chHHHhccccccC--cc---cccc
Confidence            47899999999   777777788888888999999999988864211     0   0122444332222  11   1234


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .-+.+.|+.... +.++ |.....+.|||+.+. +..++      ..-..|...|||+..+|+--|        -+||++
T Consensus      1186 ed~~vkFsn~~q-~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG--------vLWDvR 1255 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQ-FRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG--------VLWDVR 1255 (1516)
T ss_pred             ccceeehhhhHH-HHHh-cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc--------eeeeec
Confidence            456788887643 3333 455568999999543 44332      123458899999999887654        379998


Q ss_pred             CCeEEEeeeCCCee-eEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEeccCceEEEEEecCCCCCCCC
Q 020756          157 DGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       157 ~~~~i~~~~~~~~~-~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ..+.|..|....++ .=.|+|.|.-++.-+           .|||+.. ++++....=.-+.+.|+-.+.-+|..
T Consensus      1256 ~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----------EIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1256 IPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----------EIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             cHHHHhhhhhheecccccccCCCceEEeec-----------hhhhhHHHHHHhcCccccceEEEeccCccchhhh
Confidence            88888877765332 247999999988877           5676633 22332222233445555555555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.65  E-value=0.12  Score=50.17  Aligned_cols=117  Identities=16%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             CCEEEEEEccCCCeEEEEeCC-CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--------------
Q 020756           94 GSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--------------  158 (321)
Q Consensus        94 g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--------------  158 (321)
                      |..|++..   +..|.+||.. ++.+.++.-.++..+.||++|+++++.+   . ..++|++.+..              
T Consensus       117 G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t---~-~~i~il~~~~~~~~~~~~~g~e~~f  189 (443)
T PF04053_consen  117 GNLLGVKS---SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT---K-DSIYILKYNLEAVAAIPEEGVEDAF  189 (443)
T ss_dssp             SSSEEEEE---TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE----S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred             CcEEEEEC---CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe---C-CeEEEEEecchhcccccccCchhce
Confidence            88787752   3379999996 5677888766689999999999999996   3 47888765433              


Q ss_pred             eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc-CceEEEEEecCCCCCCC
Q 020756          159 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-DKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       159 ~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~-~~~~~~~w~P~~~~~~~  228 (321)
                      ..+..+ ...+.+..|.-|  -|+..+       .+.++. =+.|+.-...+. ..+|-+.+.|....+|.
T Consensus       190 ~~~~E~-~~~IkSg~W~~d--~fiYtT-------~~~lkY-l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~  249 (443)
T PF04053_consen  190 ELIHEI-SERIKSGCWVED--CFIYTT-------SNHLKY-LVNGETGIIAHLDKPLYLLGYLPKENRLYL  249 (443)
T ss_dssp             EEEEEE--S--SEEEEETT--EEEEE--------TTEEEE-EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred             EEEEEe-cceeEEEEEEcC--EEEEEc-------CCeEEE-EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence            222222 347888899887  555555       235555 245554433333 36777777775555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.62  E-value=0.41  Score=44.24  Aligned_cols=179  Identities=9%  Similarity=0.118  Sum_probs=94.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccc----eEEeCCC----CCeeEEEEEecccCCCceeecceeEEEEEcCCC----
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTV----QLNWNRG----STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----   72 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~----~~~Wsp~----G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~----   72 (321)
                      +.|+|++--+   .+.+.+..|-..+.+    .+.+..+    -.+|++.+............|.  |+++.+...    
T Consensus         2 s~i~l~d~~~---~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr--i~v~~i~~~~~~~   76 (321)
T PF03178_consen    2 SSIRLVDPTT---FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR--ILVFEISESPENN   76 (321)
T ss_dssp             -EEEEEETTT---SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE--EEEEEECSS----
T ss_pred             cEEEEEeCCC---CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE--EEEEEEEcccccc
Confidence            4678888777   456666665443332    2223322    3455554432211111111143  444444442    


Q ss_pred             --ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce-eEEe--CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           73 --HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        73 --~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~-~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                        -........+++|++++--  +..|+++.|   .++.+|++.... +...  ...+.........+++|+++.   ..
T Consensus        77 ~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g---~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD---~~  148 (321)
T PF03178_consen   77 FKLKLIHSTEVKGPVTAICSF--NGRLVVAVG---NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGD---AM  148 (321)
T ss_dssp             -EEEEEEEEEESS-EEEEEEE--TTEEEEEET---TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEE---SS
T ss_pred             eEEEEEEEEeecCcceEhhhh--CCEEEEeec---CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEE---cc
Confidence              1112222357899887765  344666544   589999986554 3332  333334444444477999988   66


Q ss_pred             CcEEEE--ECCCC--eEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          148 GDMAFW--DYVDG--KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       148 g~i~iw--D~~~~--~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ..|.++  |....  ..+..-... .++++++-+|+..++.+.      .++.+.++.+.
T Consensus       149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D------~~gnl~~l~~~  202 (321)
T PF03178_consen  149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD------KDGNLFVLRYN  202 (321)
T ss_dssp             SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE------TTSEEEEEEE-
T ss_pred             cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc------CCCeEEEEEEC
Confidence            677776  44222  223322222 678888987877777777      38889998885

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=0.53  Score=42.56  Aligned_cols=144  Identities=13%  Similarity=0.154  Sum_probs=83.2

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeE--EEEECcCCCEEEEEEccC
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQWSYSGSEFAVVYGFM  104 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~--~~~wsP~g~~l~~~~g~~  104 (321)
                      -.+..-.|.++|.-..-++.+..    .|      +..+.++.++..+.++....++...  .=.|||||.+|....++.
T Consensus        66 lpaR~Hgi~~~p~~~ravafARr----PG------tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          66 LPARGHGIAFHPALPRAVAFARR----PG------TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             cccccCCeecCCCCcceEEEEec----CC------ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            34455567777765555554321    12      2245666666644443333333221  357999999988765443


Q ss_pred             C---CeEEEEeCCCc--eeEEeC--CcCeeeEEEcCCCCeEEEEccC------------C---CCCcEEEEECCCCeEEE
Q 020756          105 P---ASATIFNKKCR--PILELG--SGPYNTVRWNPKGKFLCLAGFG------------N---LPGDMAFWDYVDGKQLG  162 (321)
Q Consensus       105 ~---~~i~i~d~~~~--~~~~~~--~~~~~~~~~sPdG~~l~~~g~~------------n---~~g~i~iwD~~~~~~i~  162 (321)
                      +   +-|-|||.+..  .+-++.  .-.-..+.|.+||+.|+.++-|            |   +...+-+.|..+|..+.
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence            3   47889998632  333442  2234578999999999987421            1   23456667766666554


Q ss_pred             eeeCC------CeeeEEEccCCCE
Q 020756          163 TTRAE------CSVTSEWSPDGRY  180 (321)
Q Consensus       163 ~~~~~------~~~~~~wSpdG~~  180 (321)
                      +..-+      .+..++..+||+.
T Consensus       216 kh~Lp~~l~~lSiRHld~g~dgtv  239 (366)
T COG3490         216 KHTLPASLRQLSIRHLDIGRDGTV  239 (366)
T ss_pred             hccCchhhhhcceeeeeeCCCCcE
Confidence            43322      4555677777764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.60  E-value=0.0078  Score=54.38  Aligned_cols=108  Identities=7%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe--------------CCcCeeeEEEcCCCCeEEEEcc
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL--------------GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~--------------~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      .-|++..|+|....+... ....|.|.+-|++..     ....+              -...+..+.|+|.|++|++-.+
T Consensus       222 eVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy  300 (460)
T COG5170         222 EVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY  300 (460)
T ss_pred             HHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence            457889999965544432 455789999998632     11111              1235678999999999999762


Q ss_pred             CCCCCcEEEEECCCC-eEEEeeeCC--------------Ce---eeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          144 GNLPGDMAFWDYVDG-KQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~-~~i~~~~~~--------------~~---~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                          -+|.|||++.. .++.++.-|              .+   ..+.||-|..++++++      +.|.+.||-.
T Consensus       301 ----ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs------y~NNfgiyp~  366 (460)
T COG5170         301 ----LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS------YSNNFGIYPT  366 (460)
T ss_pred             ----ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc------cccceeeecc
Confidence                47999998744 455555322              22   2388999999999999      6888888764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.60  E-value=0.17  Score=45.15  Aligned_cols=135  Identities=10%  Similarity=0.183  Sum_probs=83.3

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-  158 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-  158 (321)
                      .-+..++|+|+++.|+++ .+.++.|..++++++.+..+   +.+....|.|.-+|.+++...   .++.+.++++... 
T Consensus        22 ~e~SGLTy~pd~~tLfaV-~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E---r~~~L~~~~~~~~~   97 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAV-QDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE---RDQRLYIFTIDDDT   97 (248)
T ss_dssp             S-EEEEEEETTTTEEEEE-ETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEET---TTTEEEEEEE----
T ss_pred             CCccccEEcCCCCeEEEE-ECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEc---CCCcEEEEEEeccc
Confidence            348999999987766555 46788999999988877776   456788899998888877765   6789999988432 


Q ss_pred             -----eEEEeeeC-----C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---c-eeEE----------eccC
Q 020756          159 -----KQLGTTRA-----E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---S-LFFK----------KMFD  212 (321)
Q Consensus       159 -----~~i~~~~~-----~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---~-~l~~----------~~~~  212 (321)
                           ..+..+.-     +  ..=.++|+|.+..|+.+.      ...-..||.+.+   . .+..          ....
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k------E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK------ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE------ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe------CCCChhhEEEccccCccceeeccccccccccceec
Confidence                 11222221     1  234599999877777766      355667887765   1 1111          1223


Q ss_pred             ceEEEEEecCCCCCC
Q 020756          213 KLFQAEWKPVSPDKF  227 (321)
Q Consensus       213 ~~~~~~w~P~~~~~~  227 (321)
                      .+..++++|....++
T Consensus       172 d~S~l~~~p~t~~ll  186 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLL  186 (248)
T ss_dssp             ---EEEEETTTTEEE
T ss_pred             cccceEEcCCCCeEE
Confidence            677888888766554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.16  Score=48.32  Aligned_cols=175  Identities=11%  Similarity=0.142  Sum_probs=108.4

Q ss_pred             CceEEEEEcCCcCCCCce-eeeecccCccceEEeC-CCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee--ec
Q 020756            4 PASVQIYACGKDLQSQPL-ARRSFFRCSTVQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL   79 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i-~~~~~f~~~~~~~~Ws-p~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v--~l   79 (321)
                      ..++++|++.++.   .+ -.+..|--.-+  .|. ..|..+..++-.. -++++       ++.++..+..-...  .-
T Consensus        75 Dhs~KvfDvEn~D---minmiKL~~lPg~a--~wv~skGd~~s~IAVs~-~~sg~-------i~VvD~~~d~~q~~~fkk  141 (558)
T KOG0882|consen   75 DHSVKVFDVENFD---MINMIKLVDLPGFA--EWVTSKGDKISLIAVSL-FKSGK-------IFVVDGFGDFCQDGYFKK  141 (558)
T ss_pred             ccceeEEEeeccc---hhhhcccccCCCce--EEecCCCCeeeeEEeec-ccCCC-------cEEECCcCCcCccceecc
Confidence            5678899988843   22 12222222222  343 3454444433221 12222       45555555431111  11


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------ceeEE---------e--CCcCeeeEEEcCCCCeEEEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILE---------L--GSGPYNTVRWNPKGKFLCLA  141 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~~~~~---------~--~~~~~~~~~~sPdG~~l~~~  141 (321)
                      -|..||..+.++|-++.+..+  ...|.|.-|...+       +....         +  ......++.|+|+|..|...
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSi--D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl  219 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSI--DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL  219 (558)
T ss_pred             cccCceEEEEeeccccceeec--cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence            268899999999999988874  6667899998753       11111         1  23455689999999999998


Q ss_pred             ccCCCCCcEEEEECCCCeEEEeeeC--------------------------------C---CeeeEEEccCCCEEEEEEc
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTTRA--------------------------------E---CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~~~--------------------------------~---~~~~~~wSpdG~~l~t~~s  186 (321)
                      +   .|..|.+++.++++.+..++.                                +   .-+.+.|.-.|.||+.++ 
T Consensus       220 ~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t-  295 (558)
T KOG0882|consen  220 N---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT-  295 (558)
T ss_pred             C---cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec-
Confidence            7   889999999998865443221                                1   113367889999999998 


Q ss_pred             CCceeecCcEEEEeecC
Q 020756          187 APRLQIDNGIKIFHHNG  203 (321)
Q Consensus       187 ~~rl~~d~~v~iw~~~g  203 (321)
                            --++++.++..
T Consensus       296 ------~~gikvin~~t  306 (558)
T KOG0882|consen  296 ------ILGIKVINLDT  306 (558)
T ss_pred             ------ceeEEEEEeec
Confidence                  56778877743

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.016  Score=56.89  Aligned_cols=89  Identities=17%  Similarity=0.337  Sum_probs=68.6

Q ss_pred             cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--Cee-eEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~-~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ..+..+.|+|.=.+||+..   .+|.|-++-++ .+.+-++.-+  +++ +++|.|||++||.+-.      |++|+|.|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t---~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k------dG~I~L~D   90 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRT---EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK------DGTIRLHD   90 (665)
T ss_pred             cceEEEEEcCccchhheec---cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec------CCeEEEEE
Confidence            3466789999999999987   88999999886 6667666633  666 8999999999999995      99999999


Q ss_pred             e-cCceeEEe---ccCceEEEEEecC
Q 020756          201 H-NGSLFFKK---MFDKLFQAEWKPV  222 (321)
Q Consensus       201 ~-~g~~l~~~---~~~~~~~~~w~P~  222 (321)
                      + .|..+...   ....+...-|.|.
T Consensus        91 ve~~~~l~~~~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   91 VEKGGRLVSFLFSVETDISKGIWDRI  116 (665)
T ss_pred             ccCCCceeccccccccchheeecccc
Confidence            8 45555432   2235667778654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.44  E-value=0.12  Score=50.83  Aligned_cols=113  Identities=15%  Similarity=0.219  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEECcCC-----CEEEEEEccCCCeEEEEeCC------CceeE----EeC-CcCe--eeEEEcCCCCeEEEE
Q 020756           80 RKEGPVHDVQWSYSG-----SEFAVVYGFMPASATIFNKK------CRPIL----ELG-SGPY--NTVRWNPKGKFLCLA  141 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g-----~~l~~~~g~~~~~i~i~d~~------~~~~~----~~~-~~~~--~~~~~sPdG~~l~~~  141 (321)
                      ...+.|+.+.|+|-+     ..|||-+   ...+++|.+.      .+.+.    ++. .-++  ..+.|+|....|++-
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQH---kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQH---KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL  130 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEec---cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence            455689999999953     3566643   3589999873      22221    221 1121  236799999888775


Q ss_pred             ccCCCCCcEEEEECC--CCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          142 GFGNLPGDMAFWDYV--DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       142 g~~n~~g~i~iwD~~--~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      .-  .|-. -++++.  +......+... -|.+.+|.+||+.|+.+..+     -=..+|||-.-
T Consensus       131 T~--~dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~q  187 (671)
T PF15390_consen  131 TA--RDVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQ  187 (671)
T ss_pred             ec--Ccee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCch
Confidence            41  2222 245544  22333444444 78889999999999988832     22467888643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.41  E-value=0.0051  Score=55.54  Aligned_cols=110  Identities=11%  Similarity=0.191  Sum_probs=73.4

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-c---eeEEe--C-----CcCeeeEEEcCCCCeEEE-EccCCCCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R---PILEL--G-----SGPYNTVRWNPKGKFLCL-AGFGNLPG  148 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~---~~~~~--~-----~~~~~~~~~sPdG~~l~~-~g~~n~~g  148 (321)
                      |...|+++.++.|.+.++.+   .+-+|.+|++.- .   .+-.+  +     ..-+++..|+|.-..++. ++   ..|
T Consensus       171 H~yhiNSiS~NsD~et~lSa---DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG  244 (460)
T COG5170         171 HPYHINSISFNSDKETLLSA---DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKG  244 (460)
T ss_pred             ceeEeeeeeecCchheeeec---cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCC
Confidence            55667888998888777763   355899998742 2   22222  1     234677899997654433 44   679


Q ss_pred             cEEEEECCCCeE----EEe------------eeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          149 DMAFWDYVDGKQ----LGT------------TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       149 ~i~iwD~~~~~~----i~~------------~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +|++-|++...+    ...            ++.  ..+.++.||++||||++-.       -.+++|||++-
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm  310 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNM  310 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEeccc
Confidence            999999873210    000            111  1566799999999999877       78999999853

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.38  E-value=0.03  Score=50.06  Aligned_cols=71  Identities=21%  Similarity=0.325  Sum_probs=51.8

Q ss_pred             EEEcCCCCeEEEEccCCCCCcEEEEECCCC--eEEEeeeC-----CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--~~i~~~~~-----~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ++-+.||++||..    .|..|+|=..++.  .++.+..-     +.-..++||||+.+||.+.+      .+.|+++|+
T Consensus         3 ~~~~~~Gk~lAi~----qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S------~G~i~vfdl   72 (282)
T PF15492_consen    3 LALSSDGKLLAIL----QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES------TGTIRVFDL   72 (282)
T ss_pred             eeecCCCcEEEEE----eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC------CCeEEEEec
Confidence            5667899999997    5678888665432  22232222     13446999999999999997      889999999


Q ss_pred             cCceeEEe
Q 020756          202 NGSLFFKK  209 (321)
Q Consensus       202 ~g~~l~~~  209 (321)
                      .|..++..
T Consensus        73 ~g~~lf~I   80 (282)
T PF15492_consen   73 MGSELFVI   80 (282)
T ss_pred             ccceeEEc
Confidence            98777543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.37  E-value=0.0041  Score=59.11  Aligned_cols=109  Identities=19%  Similarity=0.297  Sum_probs=80.8

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC---C------c----eeEEeCCcC-----eeeE-EEcCCCCeEEEEcc
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---C------R----PILELGSGP-----YNTV-RWNPKGKFLCLAGF  143 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~---~------~----~~~~~~~~~-----~~~~-~~sPdG~~l~~~g~  143 (321)
                      -.|++++++-+|..|.+.|  .+-.|+||...   +      .    -+...-.+.     |..+ .|-|...|+++++ 
T Consensus       337 v~ITgl~Ysh~~sElLaSY--nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS-  413 (559)
T KOG1334|consen  337 VNITGLVYSHDGSELLASY--NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS-  413 (559)
T ss_pred             ccceeEEecCCccceeeee--cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC-
Confidence            3578999998888888864  45689999542   2      1    111111122     2233 5789999999998 


Q ss_pred             CCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          144 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                        .-|.|.|||..+++.|..+++.  -+.+++=+|---.||+++      .|..|+||.-.
T Consensus       414 --DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP~  466 (559)
T KOG1334|consen  414 --DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTPL  466 (559)
T ss_pred             --ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecCC
Confidence              8899999999999988877764  667788888888898888      59999999873

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.079  Score=47.83  Aligned_cols=112  Identities=15%  Similarity=0.175  Sum_probs=80.8

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      .-+.++.|+|+.+.|+++ .+.+..+.-.+.+++.+.++   +-....++.|.-+|+|+++--   .+..++++.++...
T Consensus        86 ~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE---R~~~l~~~~vd~~t  161 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE---RDRALYLFTVDADT  161 (316)
T ss_pred             ccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh---hcceEEEEEEcCCc
Confidence            348999999999977776 56777777778899998887   344556799999898888876   78888888776542


Q ss_pred             EEEee-----eC------C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          160 QLGTT-----RA------E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       160 ~i~~~-----~~------~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      .+..+     .-      . .--.++|+|..+.|..+-      ..+-+.||.+++.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK------Er~P~~I~~~~~~  212 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK------ERNPIGIFEVTQS  212 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE------ccCCcEEEEEecC
Confidence            21111     11      1 122389999988888888      4677788777543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.35  Score=44.61  Aligned_cols=146  Identities=17%  Similarity=0.185  Sum_probs=84.5

Q ss_pred             EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC
Q 020756           34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  113 (321)
Q Consensus        34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~  113 (321)
                      ..|.++...|+.+     |-      ....++.++...+....+.  ..+.+..+..--.+..|+++    ...+.+++.
T Consensus        30 P~w~~~~~~L~w~-----DI------~~~~i~r~~~~~g~~~~~~--~p~~~~~~~~~d~~g~Lv~~----~~g~~~~~~   92 (307)
T COG3386          30 PVWDPDRGALLWV-----DI------LGGRIHRLDPETGKKRVFP--SPGGFSSGALIDAGGRLIAC----EHGVRLLDP   92 (307)
T ss_pred             ccCcCCCCEEEEE-----eC------CCCeEEEecCCcCceEEEE--CCCCcccceeecCCCeEEEE----ccccEEEec
Confidence            3688888877664     11      2334677766543333333  23334444443344445554    224556665


Q ss_pred             CCcee-EEe-------CCcCeeeEEEcCCCCeEEEEcc-----C---CCCCcEEEEECCCCeEEEeeeCC--CeeeEEEc
Q 020756          114 KCRPI-LEL-------GSGPYNTVRWNPKGKFLCLAGF-----G---NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS  175 (321)
Q Consensus       114 ~~~~~-~~~-------~~~~~~~~~~sPdG~~l~~~g~-----~---n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wS  175 (321)
                      +.... ..+       .....|.+...|+|++-+....     .   ...|.|+.+|. .+..+.....+  ....++||
T Consensus        93 ~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~S  171 (307)
T COG3386          93 DTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFS  171 (307)
T ss_pred             cCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEEC
Confidence            42222 322       2345688999999998877543     1   12466777775 45555545443  44569999


Q ss_pred             cCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          176 PDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       176 pdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      |||+.|..+-+     ..+.++-|++.
T Consensus       172 pDg~tly~aDT-----~~~~i~r~~~d  193 (307)
T COG3386         172 PDGKTLYVADT-----PANRIHRYDLD  193 (307)
T ss_pred             CCCCEEEEEeC-----CCCeEEEEecC
Confidence            99999988887     35666666664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.29  E-value=0.022  Score=57.76  Aligned_cols=110  Identities=15%  Similarity=0.257  Sum_probs=73.9

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  111 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~  111 (321)
                      .-..|+|....+++..-+ . ..    .|...||.  ..|.....|+  ..-.+.+++|+|.--.|+.  |-.-+.+.+|
T Consensus        19 ti~SWHPsePlfAVA~fS-~-er----~GSVtIfa--dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~--gwe~g~~~v~   86 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFS-P-ER----GGSVTIFA--DTGEPQRDVT--YPVHATSLCWHPEEFVLAQ--GWEMGVSDVQ   86 (1416)
T ss_pred             cccccCCCCceeEEEEec-C-CC----CceEEEEe--cCCCCCcccc--cceehhhhccChHHHHHhh--ccccceeEEE
Confidence            345799998888775321 1 11    14444442  2343333332  2233457999997644444  6667889999


Q ss_pred             eCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756          112 NKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus       112 d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .......++.   |..++.-+.|||+|..|+++.   .-|.|.+|.++
T Consensus        87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d---~~g~v~lwr~d  131 (1416)
T KOG3617|consen   87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLD---NPGSVHLWRYD  131 (1416)
T ss_pred             ecCCceeeeeccCCCCCceeEEecCCCCeEEEcC---CCceeEEEEee
Confidence            8866666655   788999999999999999998   77889999765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.67  Score=47.47  Aligned_cols=182  Identities=13%  Similarity=0.122  Sum_probs=106.8

Q ss_pred             EEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CCCceee-------ee
Q 020756            7 VQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGL-------VP   78 (321)
Q Consensus         7 v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g~~~~~-------v~   78 (321)
                      .+||.+++-  -+.+.-...++.+.+++.|.-+++.+++....  |..|...  ...+|.++- ++....+       ++
T Consensus        45 G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~E--d~~~np~--llkiw~lek~~~n~sP~c~~~~ri~~  118 (933)
T KOG2114|consen   45 GRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGE--DEQGNPV--LLKIWDLEKVDKNNSPQCLYEHRIFT  118 (933)
T ss_pred             ccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEee--cCCCCce--EEEEecccccCCCCCcceeeeeeeec
Confidence            345555551  22334444555566788899999887776543  2332220  112343332 2332111       11


Q ss_pred             c--C-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-----Cc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           79 L--R-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        79 l--~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-----~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      +  . ...|+..++.|-+-+.+|+  |+.+|.|.++.-+     +- ..... +..++..+.+.-+|+.+++..   ...
T Consensus       119 ~~np~~~~p~s~l~Vs~~l~~Iv~--Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~---Tt~  193 (933)
T KOG2114|consen  119 IKNPTNPSPASSLAVSEDLKTIVC--GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA---TTE  193 (933)
T ss_pred             cCCCCCCCcceEEEEEccccEEEE--EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE---ecc
Confidence            1  1 2567888999988554444  8889999988431     11 11112 678999999999999866655   446


Q ss_pred             cEEEEECCCCe-EEEeeeCCCe--eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          149 DMAFWDYVDGK-QLGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       149 ~i~iwD~~~~~-~i~~~~~~~~--~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      .|.+|.+.... ....+..+.+  .+..+++...-|++++       ++.+.+|+.+|+-.
T Consensus       194 ~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-------~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  194 QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-------SEFLYFYDSDGRGP  247 (933)
T ss_pred             eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-------CceEEEEcCCCcce
Confidence            89999987443 2444555543  3344444333377777       68899999877543

>smart00320 WD40 WD40 repeats

Probab=96.24  E-value=0.016  Score=33.53  Aligned_cols=30  Identities=37%  Similarity=0.840  Sum_probs=26.8

Q ss_pred             CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756          122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus       122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      +...+.++.|+|+++++++++   .++.+.+||
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~---~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASAS---DDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEec---CCCeEEEcC
Confidence            567889999999999999998   889999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.19  E-value=0.11  Score=53.60  Aligned_cols=126  Identities=10%  Similarity=0.199  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCce-eeeecCCCCCeEEEEECc-----CCCEEEEEEccCCCeEEEEeCCCc---eeEE----e-CCcCeee
Q 020756           63 KLNYLTTDGTHE-GLVPLRKEGPVHDVQWSY-----SGSEFAVVYGFMPASATIFNKKCR---PILE----L-GSGPYNT  128 (321)
Q Consensus        63 ~l~~l~~~g~~~-~~v~l~~~~~v~~~~wsP-----~g~~l~~~~g~~~~~i~i~d~~~~---~~~~----~-~~~~~~~  128 (321)
                      .||.|++..+.. ....+....+|.+++=+-     +...-++  |..+..+..||.+..   .+..    + ......|
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tfl--Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~  582 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFL--GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC  582 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEE--EECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence            488888876532 223344455566554431     1111122  344568889998532   2211    1 2344566


Q ss_pred             EEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ++=+-+| +||+++   .+|.|++||....+..+.+.+  ..|+.++.+.||+||+..+       +..+.|++.
T Consensus       583 ~aTt~~G-~iavgs---~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-------~tyLlLi~t  646 (794)
T PF08553_consen  583 FATTEDG-YIAVGS---NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-------KTYLLLIDT  646 (794)
T ss_pred             EEecCCc-eEEEEe---CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-------cceEEEEEE
Confidence            7666666 667777   899999999643333344444  3899999999999999888       788888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.17  E-value=0.021  Score=57.07  Aligned_cols=156  Identities=12%  Similarity=0.211  Sum_probs=94.7

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCC
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPA  106 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~  106 (321)
                      =.+.+..||+.-..=.-++++..   .+.     -+|++..... ....+.-.|...|.++.|+|... .++++  ..+.
T Consensus        68 w~vad~qws~h~a~~~wiVsts~---qka-----iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc--svdt  137 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTSN---QKA-----IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC--SVDT  137 (1081)
T ss_pred             chhcceecccCCCCceeEEecCc---chh-----hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec--cccc
Confidence            34667789886553333333211   111     1333332221 12223335788999999999765 56665  4567


Q ss_pred             eEEEEeCCCc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccC-C
Q 020756          107 SATIFNKKCR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-G  178 (321)
Q Consensus       107 ~i~i~d~~~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpd-G  178 (321)
                      .+..||++.-  ++..+  -......+.|+--.-.++..+   ....|.+||++.+ ..+.+++.+  .+..++|..- -
T Consensus       138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass---hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~  214 (1081)
T KOG0309|consen  138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS---HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY  214 (1081)
T ss_pred             cceeeeccCCCcceeeeecccccCceeeecccCcchhhhc---cCCceEEEeccCCCcceEEecccceeeehHHHhhhhh
Confidence            8999999653  44444  355677899997554555555   3458999999876 567777775  3445566442 2


Q ss_pred             CEEEEEEcCCceeecCcEEEEeecC
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ..++++.      .|++|+.|+++.
T Consensus       215 s~~~s~~------~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  215 SEIMSSS------NDGTVKFWDYSK  233 (1081)
T ss_pred             hhhcccC------CCCceeeecccc
Confidence            3345555      399999999953

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.2  Score=46.22  Aligned_cols=118  Identities=14%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---c---e--eEEe--CCcCeeeEEEc
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R---P--ILEL--GSGPYNTVRWN  132 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~---~--~~~~--~~~~~~~~~~s  132 (321)
                      .||.++..+...+.+ .++-..-+.++||||++.|.++ ....+.+.-|++..   .   .  ...+  +.+.--.++.-
T Consensus       144 ~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD  221 (307)
T COG3386         144 SLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD  221 (307)
T ss_pred             eEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence            489888655533333 2334455789999999988887 34456888887642   1   1  1111  12222233444


Q ss_pred             CCCCeEEEEccCCCC-CcEEEEECCCCeEEEeeeCC--CeeeEEE-ccCCCEEEEEEc
Q 020756          133 PKGKFLCLAGFGNLP-GDMAFWDYVDGKQLGTTRAE--CSVTSEW-SPDGRYFMTATT  186 (321)
Q Consensus       133 PdG~~l~~~g~~n~~-g~i~iwD~~~~~~i~~~~~~--~~~~~~w-SpdG~~l~t~~s  186 (321)
                      -+|.+-+.+.   .+ +.|.+|+.+ ++++..+.-+  .+++++| .|+.+.|...+.
T Consensus       222 adG~lw~~a~---~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         222 ADGNLWVAAV---WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCEEEecc---cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            4566554333   23 389999997 8888877765  5667777 556666555553

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.11  E-value=0.29  Score=43.82  Aligned_cols=138  Identities=16%  Similarity=0.125  Sum_probs=84.9

Q ss_pred             CeEEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE-ECCCCe--
Q 020756           84 PVHDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW-DYVDGK--  159 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw-D~~~~~--  159 (321)
                      .+.++++|++|+.++++.. .....+.++...+.....+.........|+++|...++..   .+....++ +..++.  
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~---~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDD---GSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEc---CCCceEEEEecCCCcce
Confidence            6889999999999988751 2223666666554444433344778899999988777765   33444444 333332  


Q ss_pred             E--EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee----cC-c-ee---EEe---ccCceEEEEEecCCC
Q 020756          160 Q--LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH----NG-S-LF---FKK---MFDKLFQAEWKPVSP  224 (321)
Q Consensus       160 ~--i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~----~g-~-~l---~~~---~~~~~~~~~w~P~~~  224 (321)
                      .  +...... .|+.+.+||||..+|......   .+..+.|--+    .| . .+   ...   ....+.++.|.++..
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~---~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG---GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecC---CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            1  1111112 688999999999999887310   1344555444    34 1 11   111   234788999999876


Q ss_pred             CCC
Q 020756          225 DKF  227 (321)
Q Consensus       225 ~~~  227 (321)
                      .++
T Consensus       179 L~V  181 (253)
T PF10647_consen  179 LVV  181 (253)
T ss_pred             EEE
Confidence            544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.11  E-value=1.4  Score=42.38  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=40.5

Q ss_pred             cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCE
Q 020756          124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRY  180 (321)
Q Consensus       124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~  180 (321)
                      +++..++.||+|++||+-.   .+|.+.+...+-.+.+..+...   ...++.|+-+..-
T Consensus       217 ~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav  273 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV  273 (410)
T ss_pred             CCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence            5788999999999999987   7799999876544555554433   5667888877543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.11  E-value=0.29  Score=46.30  Aligned_cols=151  Identities=15%  Similarity=0.165  Sum_probs=80.7

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc---CCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT---DGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~---~g~~~~-~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      ....|.|.++|+.+++-..+-....+........|+.+..   +|..++ .+-.+.....+.+.+.++|  +.++  ..+
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~--~~~   90 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA--TPP   90 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe--CCC
Confidence            5678999999996654321100000000001124666654   333222 2222334456889999999  4443  333


Q ss_pred             CeEEEE-eCCCc--------eeE-EeC------CcCeeeEEEcCCCCeEEEEccC-C---------------CCCcEEEE
Q 020756          106 ASATIF-NKKCR--------PIL-ELG------SGPYNTVRWNPKGKFLCLAGFG-N---------------LPGDMAFW  153 (321)
Q Consensus       106 ~~i~i~-d~~~~--------~~~-~~~------~~~~~~~~~sPdG~~l~~~g~~-n---------------~~g~i~iw  153 (321)
                       .|..| |..+.        .+. .++      ....+.+.|.|||.+.+..+.. +               ..|.|.-+
T Consensus        91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence             45544 54321        121 232      2336789999999877765521 1               12567777


Q ss_pred             ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEE
Q 020756          154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~  185 (321)
                      |.+.++........ +...++|+|+|+++++-.
T Consensus       170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            77655432222222 567799999999876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.016  Score=54.02  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=61.9

Q ss_pred             CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756          122 GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       122 ~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      +...+..++|||+.+ +|.+++   .+..|.|.|+.+...+..+..+ .+.+++|.-|.++++.++.     ..+.|.||
T Consensus       192 ~g~~IrdlafSp~~~GLl~~as---l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl-----~nG~Vlvy  263 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLAS---LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL-----QNGMVLVY  263 (463)
T ss_pred             cchhhhhhccCccccceeeeec---cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec-----cCceEEEE
Confidence            345678899999988 677777   7779999999999888888776 7889999999999999986     47789999


Q ss_pred             eec
Q 020756          200 HHN  202 (321)
Q Consensus       200 ~~~  202 (321)
                      |..
T Consensus       264 D~R  266 (463)
T KOG1645|consen  264 DMR  266 (463)
T ss_pred             Ecc
Confidence            983

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.089  Score=49.91  Aligned_cols=120  Identities=20%  Similarity=0.302  Sum_probs=81.4

Q ss_pred             EEEccCCCeEEEEeCCCc--ee---EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC-C-----eE-------
Q 020756           99 VVYGFMPASATIFNKKCR--PI---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G-----KQ-------  160 (321)
Q Consensus        99 ~~~g~~~~~i~i~d~~~~--~~---~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~-~-----~~-------  160 (321)
                      .+.....+.+.++|..+.  +.   ..+|..++..+.++|-|..+++..   ..|-|+-|.... .     +.       
T Consensus       115 AVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD---~~gmVEyWs~e~~~qfPr~~l~~~~K~e  191 (558)
T KOG0882|consen  115 AVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID---ISGMVEYWSAEGPFQFPRTNLNFELKHE  191 (558)
T ss_pred             EeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc---ccceeEeecCCCcccCcccccccccccc
Confidence            334566778999998543  22   234899999999999999999987   678999998762 1     11       


Q ss_pred             ---EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCC
Q 020756          161 ---LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       161 ---i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~  227 (321)
                         ....+.. ..++++|||+|..|.+-..      |..|+++.+.++.+...-.....+....|..++-+
T Consensus       192 TdLy~f~K~Kt~pts~Efsp~g~qistl~~------DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l  256 (558)
T KOG0882|consen  192 TDLYGFPKAKTEPTSFEFSPDGAQISTLNP------DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL  256 (558)
T ss_pred             chhhcccccccCccceEEccccCcccccCc------ccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence               0111111 5677999999999998873      99999999966554333333344445555554433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.04  E-value=0.081  Score=51.96  Aligned_cols=97  Identities=18%  Similarity=0.293  Sum_probs=62.8

Q ss_pred             ceEEEEEcCCcC--CCCce-eeee----cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            5 ASVQIYACGKDL--QSQPL-ARRS----FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         5 ~~v~v~~~~~~~--~~~~i-~~~~----~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      -.|.||.+.--.  .++.+ .|-.    -|..=.-...|+|....|.+++..|+     +     -++.+..+.. ....
T Consensus        82 khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-----S-----V~~sV~~d~s-rVka  150 (671)
T PF15390_consen   82 KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-----S-----VLPSVHCDSS-RVKA  150 (671)
T ss_pred             ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-----e-----EeeeeeeCCc-eEEE
Confidence            368999997411  11211 1111    12223335689999999999976542     1     2455655554 3445


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  113 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~  113 (321)
                      .+...|-||+.+|.+||++|+++.|. .=..+|||-
T Consensus       151 Di~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~  185 (671)
T PF15390_consen  151 DIKTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDS  185 (671)
T ss_pred             eccCCceEEEEEecCcCCEEEEEeCC-eEEEEEecC
Confidence            56678999999999999999998775 235678876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.94  E-value=1.6  Score=42.08  Aligned_cols=79  Identities=8%  Similarity=0.101  Sum_probs=49.4

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecce-eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGES-KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  111 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~-~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~  111 (321)
                      .+.-+|.|..|+++...  .+......... .|...+..|.....+..++ +.|.++.|+.+-+.+++   ..+|.+.+|
T Consensus        33 ~va~a~~gGpIAi~~d~--~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV---~~dG~v~vy  106 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDE--SKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDEELVVV---QSDGTVRVY  106 (410)
T ss_pred             eEEEcCCCceEEEEecC--cccccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEECCCCeEEEE---EcCCEEEEE
Confidence            34556667777665221  01111001111 3677777887777777777 89999999986555544   458899999


Q ss_pred             eCCCce
Q 020756          112 NKKCRP  117 (321)
Q Consensus       112 d~~~~~  117 (321)
                      |+.++.
T Consensus       107 ~~~G~~  112 (410)
T PF04841_consen  107 DLFGEF  112 (410)
T ss_pred             eCCCce
Confidence            996655

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10115 protease 2; Provisional

Probab=95.91  E-value=0.25  Score=50.79  Aligned_cols=114  Identities=8%  Similarity=-0.004  Sum_probs=69.4

Q ss_pred             CeEEEEECcCCCEEEEEEc---cCCCeEEEEeCCCce-eEEeCCcCeeeEEEcCCCCeEEEEccC-C--CCCcEEEEECC
Q 020756           84 PVHDVQWSYSGSEFAVVYG---FMPASATIFNKKCRP-ILELGSGPYNTVRWNPKGKFLCLAGFG-N--LPGDMAFWDYV  156 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g---~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~sPdG~~l~~~g~~-n--~~g~i~iwD~~  156 (321)
                      .+..+.|||||++|++...   ++...+.+.|+.+.. +.+.-......+.|++||+.|+.+... +  ....|+++++.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            4678999999999988642   222367788885443 222111122569999999988887642 1  23579999998


Q ss_pred             CC--e--EEEeeeCCCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEe
Q 020756          157 DG--K--QLGTTRAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       157 ~~--~--~i~~~~~~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ++  +  ++............|.+ |+++++..+...   .++.+.+++
T Consensus       208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~  253 (686)
T PRK10115        208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLD  253 (686)
T ss_pred             CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEE
Confidence            77  3  33332222233234544 999887655421   245566666

>smart00320 WD40 WD40 repeats

Probab=95.78  E-value=0.036  Score=31.86  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=23.9

Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      .+..+.|++++.++++++.      |+.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~------d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASD------DGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecC------CCeEEEcC
Confidence            6888999999999998884      89999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.66  E-value=0.15  Score=51.25  Aligned_cols=101  Identities=18%  Similarity=0.333  Sum_probs=65.6

Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEeCCCcee---EEe-CCcCeeeEEEc--CCCCeEEEEccCCCCCcEEEEEC-----C
Q 020756           88 VQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWN--PKGKFLCLAGFGNLPGDMAFWDY-----V  156 (321)
Q Consensus        88 ~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~---~~~-~~~~~~~~~~s--PdG~~l~~~g~~n~~g~i~iwD~-----~  156 (321)
                      +.-|. -+.+|++. .....++|||.+....   ..| ....|.++.|.  |||+.|+..||+   ..|.+|--     .
T Consensus        35 i~gss-~~k~a~V~-~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~---~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   35 ISGSS-IKKIAVVD-SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP---HHVLLYTQLRYDYT  109 (631)
T ss_pred             Eeecc-cCcEEEEE-CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC---cEEEEEEccchhhh
Confidence            33344 33566663 3345999999965432   223 46788999887  799999999954   47777632     2


Q ss_pred             CC----eE-----EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          157 DG----KQ-----LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       157 ~~----~~-----i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +.    ..     +..++.|.+.+..|.+||.+++.+        +|.+.|++-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------GNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------GNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--------CCEEEEECC
Confidence            11    12     333455688899999999966554        467777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.64  E-value=0.023  Score=50.19  Aligned_cols=76  Identities=13%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE-EEeeeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEE
Q 020756          124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~-i~~~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      ..+.+++-+|..+.++.+|.  .+|.+-+||.++... +..+..|  .+..+-|+| ++.+|.+++      .|+.+.-|
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s------edGslw~w  251 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS------EDGSLWHW  251 (319)
T ss_pred             ccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec------CCCcEEEE
Confidence            34888999998888888772  679999999988743 3334444  788899999 699999999      59999999


Q ss_pred             eecCceeE
Q 020756          200 HHNGSLFF  207 (321)
Q Consensus       200 ~~~g~~l~  207 (321)
                      |-++..+.
T Consensus       252 das~~~l~  259 (319)
T KOG4714|consen  252 DASTTFLS  259 (319)
T ss_pred             cCCCceEE
Confidence            99887664

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.092  Score=49.14  Aligned_cols=76  Identities=11%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      .+...|.+++|||..+-|+.. +..+.+|.|+|+....+ ..+ -...+.+++|.-|.+..+.+|.  .+|.|+|||++.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~-asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl--~nG~VlvyD~R~  267 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGL-ASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL--QNGMVLVYDMRQ  267 (463)
T ss_pred             ccchhhhhhccCccccceeee-eccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec--cCceEEEEEccC
Confidence            456689999999988844443 45677999999976533 333 3478889999999998888884  459999999985


Q ss_pred             C
Q 020756          158 G  158 (321)
Q Consensus       158 ~  158 (321)
                      -
T Consensus       268 ~  268 (463)
T KOG1645|consen  268 P  268 (463)
T ss_pred             C
Confidence            4

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.54  E-value=1.3  Score=38.36  Aligned_cols=140  Identities=13%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEE--eCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~--Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      -+.|..|+..+   ++.+.+..+.+ ......  -.+++..+++..            +...|+.++...+ ........
T Consensus         2 ~g~l~~~d~~t---G~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~------------~~~~l~~~d~~tG-~~~W~~~~   64 (238)
T PF13360_consen    2 DGTLSALDPRT---GKELWSYDLGP-GIGGPVATAVPDGGRVYVAS------------GDGNLYALDAKTG-KVLWRFDL   64 (238)
T ss_dssp             TSEEEEEETTT---TEEEEEEECSS-SCSSEEETEEEETTEEEEEE------------TTSEEEEEETTTS-EEEEEEEC
T ss_pred             CCEEEEEECCC---CCEEEEEECCC-CCCCccceEEEeCCEEEEEc------------CCCEEEEEECCCC-CEEEEeec
Confidence            36889999988   88888887733 222222  223555655541            4446888887433 22222222


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CC---c-CeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GS---G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~---~-~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      .+++.... ..++..+++.  ..++.+..+|. .++.+..+  ..   . .........+|..++++.   ..+.|..+|
T Consensus        65 ~~~~~~~~-~~~~~~v~v~--~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d  138 (238)
T PF13360_consen   65 PGPISGAP-VVDGGRVYVG--TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALD  138 (238)
T ss_dssp             SSCGGSGE-EEETTEEEEE--ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEE
T ss_pred             ccccccee-eecccccccc--cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEe
Confidence            33332222 2345555554  34568999996 55555553  11   1 122233333478787776   679999999


Q ss_pred             CCCCeEEEeeeC
Q 020756          155 YVDGKQLGTTRA  166 (321)
Q Consensus       155 ~~~~~~i~~~~~  166 (321)
                      +++|+.+-....
T Consensus       139 ~~tG~~~w~~~~  150 (238)
T PF13360_consen  139 PKTGKLLWKYPV  150 (238)
T ss_dssp             TTTTEEEEEEES
T ss_pred             cCCCcEEEEeec
Confidence            999988766654

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.41  E-value=0.044  Score=35.60  Aligned_cols=34  Identities=12%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756          123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus       123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ...+..+.|+|...+|+++.   .+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t---~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGT---EDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEE---CCCeEEEEEC-CCcC
Confidence            45688999999999999998   8999999998 5544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.39  E-value=0.63  Score=43.23  Aligned_cols=128  Identities=17%  Similarity=0.177  Sum_probs=79.7

Q ss_pred             eEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEc--------cCCCeEEEEeCCCc-eeEEe--CC-------
Q 020756           63 KLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYG--------FMPASATIFNKKCR-PILEL--GS-------  123 (321)
Q Consensus        63 ~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g--------~~~~~i~i~d~~~~-~~~~~--~~-------  123 (321)
                      .+|+++.+.. ...+++   .+-...+..||||+.+.++..        ...--|.+||..+- +..++  ..       
T Consensus        18 rv~viD~d~~k~lGmi~---~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMID---TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEETTTTEEEEEEE---EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             eEEEEECCCCcEEEEee---cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            5677775443 222333   234455788999999987532        22236889998653 44433  22       


Q ss_pred             cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ...+.+..|.||+++++..|. -...|.|.|+..++.+..+.-+.+..+-=+...+|.+.|.       |+.+.-..+
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~T-Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~-------DGsl~~v~L  164 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFT-PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCG-------DGSLLTVTL  164 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEES-SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEET-------TSCEEEEEE
T ss_pred             ccccceEEccCCcEEEEEccC-CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEec-------CCceEEEEE
Confidence            233568999999999998643 2468999999999999988887544443333334554444       777766666

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=95.36  E-value=0.28  Score=50.44  Aligned_cols=63  Identities=13%  Similarity=0.240  Sum_probs=46.3

Q ss_pred             CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccC------CCCCcEEEEECCCCe
Q 020756           93 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGK  159 (321)
Q Consensus        93 ~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~------n~~g~i~iwD~~~~~  159 (321)
                      +++.|++  |...|+|.+-|.+ .+.+++|  |.+.+..  |.=+|+.|+++|+.      +.|.-|.|||++..+
T Consensus       186 Nnr~lf~--G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  186 NNRNLFC--GDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR  257 (1118)
T ss_pred             cCcEEEe--ecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence            4555555  6777899999985 5677787  5665555  45569999999973      257889999998643

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.01  E-value=0.18  Score=50.31  Aligned_cols=99  Identities=12%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ..|.=-+++-.++++++  |...|.+++|+..++.+..+    ..+....+..|++..++|+++   ..|.|.++-++..
T Consensus        34 ~~v~lTc~dst~~~l~~--GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt---~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAM--GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT---ASGRVSVFQLNKE  108 (726)
T ss_pred             ceEEEEEeecCCceEEE--ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc---CCceEEeehhhcc
Confidence            34445566777888888  56678999999877655444    345566788999998888888   7789999987753


Q ss_pred             ---e--EEEeeeC-C--CeeeEEEccCCCEEEEEEc
Q 020756          159 ---K--QLGTTRA-E--CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       159 ---~--~i~~~~~-~--~~~~~~wSpdG~~l~t~~s  186 (321)
                         .  .+..... |  .|++++||+||..+.+|-+
T Consensus       109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~  144 (726)
T KOG3621|consen  109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS  144 (726)
T ss_pred             CCCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence               1  2222222 2  6889999999999998885

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.99  E-value=0.15  Score=49.54  Aligned_cols=121  Identities=12%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             eeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe----CCcCeeeEEEcCC-CCeEEEEccCCCC
Q 020756           75 GLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL----GSGPYNTVRWNPK-GKFLCLAGFGNLP  147 (321)
Q Consensus        75 ~~v~l-~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~----~~~~~~~~~~sPd-G~~l~~~g~~n~~  147 (321)
                      ++.+. .|+.+|+++.|--+-++++.+    |+.+.+||- .+.++...    ..+....+.--|+ .+.|+.+|- ...
T Consensus       776 CQfTY~aHkk~i~~igfL~~lr~i~Sc----D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc-sae  850 (1034)
T KOG4190|consen  776 CQFTYQAHKKPIHDIGFLADLRSIASC----DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC-SAE  850 (1034)
T ss_pred             eeeEhhhccCcccceeeeeccceeeec----cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec-cch
Confidence            44443 378999999999999988876    567999996 44443322    1222233333343 454544431 156


Q ss_pred             CcEEEEECCCCeEEEeee-----CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          148 GDMAFWDYVDGKQLGTTR-----AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~-----~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                      .+|+++|.+.++-+..+.     .+  .+.+++..+.|.+++.+-+      .+++.+.|.. |..+
T Consensus       851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS------nGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS------NGCIAILDARNGKVI  911 (1034)
T ss_pred             hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc------CCcEEEEecCCCcee
Confidence            899999998775433322     22  3456899999999999986      7888888874 4433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.91  E-value=0.07  Score=34.65  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=29.4

Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      .+..++|||+..+||.++.      ++.|.||.++++.+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~------~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTE------DGEVLVYRLNWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEEC------CCeEEEEECCCcCc
Confidence            5778999999999999994      99999999988765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=0.2  Score=48.84  Aligned_cols=182  Identities=12%  Similarity=0.163  Sum_probs=108.7

Q ss_pred             CCceEEEEEcCCcC--CCCceeeeec--ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eee
Q 020756            3 SPASVQIYACGKDL--QSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLV   77 (321)
Q Consensus         3 ~p~~v~v~~~~~~~--~~~~i~~~~~--f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v   77 (321)
                      .+-.|++|++..-.  .+...+|.++  ++....++.+-.+-++++.+              ...+++|+.+.+.. .++
T Consensus       755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--------------D~giHlWDPFigr~Laq~  820 (1034)
T KOG4190|consen  755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--------------DGGIHLWDPFIGRLLAQM  820 (1034)
T ss_pred             CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--------------cCcceeecccccchhHhh
Confidence            35678999997621  1223344443  34455566666666666543              11267776654321 111


Q ss_pred             -ecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCCCcee-EEe-------CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           78 -PLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKKCRPI-LEL-------GSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        78 -~l~~~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-------~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                       .-.+++.+..+.--|+ .+.++++.-....++++||.+...+ .++       .++-+.+++..|.|+.++.+-   ..
T Consensus       821 ~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L---Sn  897 (1034)
T KOG4190|consen  821 EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL---SN  897 (1034)
T ss_pred             hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh---cC
Confidence             2235666666666665 4444443113455899999863322 111       345678899999999999876   67


Q ss_pred             CcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEE-Eee-cCceeEE
Q 020756          148 GDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI-FHH-NGSLFFK  208 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~i-w~~-~g~~l~~  208 (321)
                      |.|-+.|.++|+.+.....-  ...++ -.|..++|+....      |..+-+ |+. +|...++
T Consensus       898 Gci~~LDaR~G~vINswrpmecdllql-aapsdq~L~~sal------dHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  898 GCIAILDARNGKVINSWRPMECDLLQL-AAPSDQALAQSAL------DHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             CcEEEEecCCCceeccCCcccchhhhh-cCchhHHHHhhcc------cceeEeeehhcCCeeeec
Confidence            99999999999988765432  22222 2455666666553      888888 886 4443343

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.57  E-value=3.3  Score=42.66  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce-eEE-e--CCcCeeeEEEcCCCC-eEEEEccCCCCCcEE
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE-L--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA  151 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~-~~~-~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~  151 (321)
                      ....-++||+.+.+.-+++..+++..  ...|.+|.+.++. ... +  +....+|..+++--. +|+.++     .-|+
T Consensus       166 ~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-----e~l~  238 (933)
T KOG2114|consen  166 YSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-----EFLY  238 (933)
T ss_pred             eeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-----ceEE
Confidence            33345789999999999987443322  3479999997665 333 3  456789999997655 555544     6899


Q ss_pred             EEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756          152 FWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~  185 (321)
                      |||.+....--.+....-..+-|..-|.+|+...
T Consensus       239 fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~  272 (933)
T KOG2114|consen  239 FYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT  272 (933)
T ss_pred             EEcCCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence            9999765555555523333345555566555443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.52  E-value=3.1  Score=36.69  Aligned_cols=93  Identities=13%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--C------ceeEEeCC-cCee-----eEEEcCCCCeEEEEccCCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--C------RPILELGS-GPYN-----TVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~------~~~~~~~~-~~~~-----~~~~sPdG~~l~~~g~~n~  146 (321)
                      .-+.-+.++|+-+.+.|.++ ....-.+.-||.+  +      +.++.+.. .+..     -+...-+|.+.+.+=   .
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~i-Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~---n  231 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYI-DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF---N  231 (310)
T ss_pred             hccCCccccccccCcEEEEE-ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe---c
Confidence            34555789999999988887 3445567667742  1      23444421 1111     122233455544443   4


Q ss_pred             CCcEEEEECCCCeEEEeeeCC--CeeeEEEccC
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPD  177 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpd  177 (321)
                      .++|.-.|..+|+.+..+.-+  .+++++|---
T Consensus       232 g~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            579999999999999888765  7888888543

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=94.42  E-value=1.9  Score=43.85  Aligned_cols=99  Identities=18%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc--cCCCeEEE
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG--FMPASATI  110 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g--~~~~~i~i  110 (321)
                      ...-++.|..++.+... .+.....  ....+|..+...    ...+...+.+..+.|+|+|+.+++...  .....+.+
T Consensus        17 ~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l   89 (620)
T COG1506          17 DPRVSPPGGRLAYILTG-LDFLKPL--YKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYL   89 (620)
T ss_pred             CcccCCCCceeEEeecc-ccccccc--cccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEE
Confidence            34557777777776432 2222222  222344432221    223346678889999999999999752  22235666


Q ss_pred             EeCCCceeEEeCCcCeeeEEEcCCCCeEEE
Q 020756          111 FNKKCRPILELGSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus       111 ~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~  140 (321)
                      .+..+  ........+....|+|+|+.+++
T Consensus        90 ~~~~g--~~~~~~~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          90 VDVGG--LITKTAFGVSDARWSPDGDRIAF  117 (620)
T ss_pred             EecCC--ceeeeecccccceeCCCCCeEEE
Confidence            66663  33335667888999999999888

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.38  E-value=0.51  Score=45.93  Aligned_cols=127  Identities=13%  Similarity=0.219  Sum_probs=77.5

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCC--EEEE---EEccCCCeEEEEeCCCce--eEEe-------CCcCee
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS--EFAV---VYGFMPASATIFNKKCRP--ILEL-------GSGPYN  127 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~--~l~~---~~g~~~~~i~i~d~~~~~--~~~~-------~~~~~~  127 (321)
                      ..||.|++..+. ..-.-..+..|.-+.+.|+.+  ++..   ..|-.+..+.-||.+-+.  +...       .....+
T Consensus       356 ~~l~klDIE~GK-IVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs  434 (644)
T KOG2395|consen  356 DKLYKLDIERGK-IVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS  434 (644)
T ss_pred             Ccceeeecccce-eeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence            347778776652 111112233477777777655  2221   124456678888875321  2211       223344


Q ss_pred             eEEEcCCCCeEEEEccCCCCCcEEEEECCCCe-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          128 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       128 ~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      |++=--+| +|++++   .+|.|++||. .+. -.+.+.+.  .|..+..+.||++|+..+       ++.+.|-+.
T Consensus       435 c~aTT~sG-~IvvgS---~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-------~tyLlLi~t  499 (644)
T KOG2395|consen  435 CFATTESG-YIVVGS---LKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-------KTYLLLIDT  499 (644)
T ss_pred             eeeecCCc-eEEEee---cCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-------ccEEEEEEE
Confidence            55444444 788888   9999999998 443 33334443  789999999999998877       777777765

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=94.37  E-value=0.78  Score=42.12  Aligned_cols=90  Identities=17%  Similarity=0.389  Sum_probs=62.4

Q ss_pred             eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCCEEEEEEcCCce-------------
Q 020756          126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRL-------------  190 (321)
Q Consensus       126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl-------------  190 (321)
                      -.+.+|+ +|++-++-+   ..|.|.-+|.++|+  .+..+.+ ....+.|.  |++++++.|.+|-             
T Consensus       205 PhSPRWh-dgrLwvlds---gtGev~~vD~~~G~~e~Va~vpG-~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l  277 (335)
T TIGR03032       205 PHSPRWY-QGKLWLLNS---GRGELGYVDPQAGKFQPVAFLPG-FTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERL  277 (335)
T ss_pred             CcCCcEe-CCeEEEEEC---CCCEEEEEcCCCCcEEEEEECCC-CCccccee--CCEEEEEeccccCCCCcCCCchhhhh
Confidence            3455666 566666655   66899999988774  4444443 66778888  9999999998872             


Q ss_pred             e-ecCcEEEEee-cCcee----EEeccCceEEEEEecC
Q 020756          191 Q-IDNGIKIFHH-NGSLF----FKKMFDKLFQAEWKPV  222 (321)
Q Consensus       191 ~-~d~~v~iw~~-~g~~l----~~~~~~~~~~~~w~P~  222 (321)
                      . ...++.+-|+ +|..+    +.....++++++.=|.
T Consensus       278 ~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       278 DALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             hhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence            1 1256888887 56655    3345569999988875

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.14  E-value=4.7  Score=37.15  Aligned_cols=134  Identities=16%  Similarity=0.229  Sum_probs=68.0

Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      ..+.....+.+.++.-++||+++++.  ....-..-||--..   +........+..+.|+|++.+.+++    ..|.|.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~----~Gg~~~  210 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA----RGGQIQ  210 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE----TTTEEE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe----CCcEEE
Confidence            44444557889999999999988883  33334455665332   2223357789999999999887765    457888


Q ss_pred             EEE-CCCCeEEEe----e--eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEec-----cCceEEEE
Q 020756          152 FWD-YVDGKQLGT----T--RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKM-----FDKLFQAE  218 (321)
Q Consensus       152 iwD-~~~~~~i~~----~--~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~-----~~~~~~~~  218 (321)
                      +=| ....+.-..    +  ....+.+++|.++++..+++.       .+.+ +...+| +--.+..     ...+|.+.
T Consensus       211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-------~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~  282 (302)
T PF14870_consen  211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-------SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIV  282 (302)
T ss_dssp             EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-------TT-E-EEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred             EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-------CccE-EEeCCCCccceECccccCCCCceEEEE
Confidence            776 222222211    1  122578899999999888777       3433 333443 3222221     23678887


Q ss_pred             EecC
Q 020756          219 WKPV  222 (321)
Q Consensus       219 w~P~  222 (321)
                      |.+.
T Consensus       283 f~~~  286 (302)
T PF14870_consen  283 FVNP  286 (302)
T ss_dssp             EEET
T ss_pred             EcCC
Confidence            7654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.94  E-value=2.8  Score=43.81  Aligned_cols=133  Identities=17%  Similarity=0.326  Sum_probs=82.7

Q ss_pred             eecCCCCCeEEEEEC---c----CCCEEEEEEccCCCeEEEEe------C----------CCceeEEe-----CCcCeee
Q 020756           77 VPLRKEGPVHDVQWS---Y----SGSEFAVVYGFMPASATIFN------K----------KCRPILEL-----GSGPYNT  128 (321)
Q Consensus        77 v~l~~~~~v~~~~ws---P----~g~~l~~~~g~~~~~i~i~d------~----------~~~~~~~~-----~~~~~~~  128 (321)
                      ..+.-..||..+.|+   .    ..+.|+|-   ....++|+.      .          ..+++..+     +..+...
T Consensus        74 w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vr---t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD  150 (765)
T PF10214_consen   74 WSIDDGSPIKQIKFATLSESFDEKSRWLAVR---TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD  150 (765)
T ss_pred             eEcCCCCCeeEEEecccccccCCcCcEEEEE---cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence            444567899999998   2    23467764   345677776      1          12455555     4457788


Q ss_pred             EEEcC-CCCeEEEEccCCCCCcEEEEECCCCe-----EE-------Eee-eCC----CeeeEEEccCCCEEEEEEcCCce
Q 020756          129 VRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGK-----QL-------GTT-RAE----CSVTSEWSPDGRYFMTATTAPRL  190 (321)
Q Consensus       129 ~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~~~-----~i-------~~~-~~~----~~~~~~wSpdG~~l~t~~s~~rl  190 (321)
                      ++|+| +.+.||+..   ..|+..|||+....     .+       ..+ ...    .-..+.|.++-..|+.+.     
T Consensus       151 v~FnP~~~~q~AiVD---~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-----  222 (765)
T PF10214_consen  151 VAFNPWDQRQFAIVD---EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-----  222 (765)
T ss_pred             EEeccCccceEEEEe---ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-----
Confidence            99999 456888887   78999999992110     01       112 111    223689999988888888     


Q ss_pred             eecCcEEEEeecCcee-----EEeccCceEEEEEecC
Q 020756          191 QIDNGIKIFHHNGSLF-----FKKMFDKLFQAEWKPV  222 (321)
Q Consensus       191 ~~d~~v~iw~~~g~~l-----~~~~~~~~~~~~w~P~  222 (321)
                        ...+.++|+.+...     .....+.+.++.=+|.
T Consensus       223 --r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  223 --RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             --CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence              67888888855422     2223345555555554

These proteins are found in fungi.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.86  E-value=5.6  Score=37.08  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=69.2

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE---Ee------------CCcCeeeEEEcCCCCeEEEEcc----CC-
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---EL------------GSGPYNTVRWNPKGKFLCLAGF----GN-  145 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~---~~------------~~~~~~~~~~sPdG~~l~~~g~----~n-  145 (321)
                      ..-+++..+..+.++  .-.|.++-.|+.+....   .+            ..+...-+++++..+.|.+.-.    ++ 
T Consensus       187 ~~~~~~~~~~~~~F~--Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH  264 (342)
T PF06433_consen  187 EHPAYSRDGGRLYFV--SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH  264 (342)
T ss_dssp             S--EEETTTTEEEEE--BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred             cccceECCCCeEEEE--ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence            355666555555543  33567777777554221   11            1234456888876554444311    11 


Q ss_pred             --CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE
Q 020756          146 --LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK  208 (321)
Q Consensus       146 --~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~  208 (321)
                        -...|+++|+.+++.+..++. +.+.++..|.|.+=++.+.+.    .++.+.|||. +|+++..
T Consensus       265 KdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~----~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  265 KDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA----GDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             TS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET----TTTEEEEEETTT--EEEE
T ss_pred             cCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC----CCCeEEEEeCcCCcEEee
Confidence              123799999999999998885 367789999998866655431    3678999997 6777744

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=93.81  E-value=0.42  Score=49.22  Aligned_cols=92  Identities=14%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             CeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEE
Q 020756          106 ASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM  182 (321)
Q Consensus       106 ~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~  182 (321)
                      ..+..+|+.+......   ....+.-++.+  ++++..+.   ..|+|.+-|.++.+.+.++.+|.-.-.+|+-.|..|+
T Consensus       157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~---t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLi  231 (1118)
T KOG1275|consen  157 EKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGD---TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLI  231 (1118)
T ss_pred             hheeeeecccceeeeeeeccCCceEEEEec--CcEEEeec---ccceEEeecCCcCceeeeeeccccceeeeeccCCeEE
Confidence            3566677765544333   34446566664  67777776   7799999999999999999999666668999999999


Q ss_pred             EEEcCCce---eecCcEEEEeec
Q 020756          183 TATTAPRL---QIDNGIKIFHHN  202 (321)
Q Consensus       183 t~~s~~rl---~~d~~v~iw~~~  202 (321)
                      +++-+-|.   -.|.-+++||+.
T Consensus       232 tCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  232 TCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             Eeecccccccccccchhhhhhhh
Confidence            98866554   368889999983

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=0.56  Score=49.52  Aligned_cols=138  Identities=11%  Similarity=0.090  Sum_probs=87.0

Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---------eeEE----e-CCcCeeeEEEcCCCCeEEEEcc
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---------PILE----L-GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---------~~~~----~-~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      .+.++-+|+.+...+|+...+++....+--|..||++.-         ++..    + .....-++.|+|.=-...+...
T Consensus        96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen   96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence            345678999999999999888876666558889998421         1111    1 1223457899986433222221


Q ss_pred             CCCCCcEEEEECCCCe-EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEec------cCceE
Q 020756          144 GNLPGDMAFWDYVDGK-QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM------FDKLF  215 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~-~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~------~~~~~  215 (321)
                        .|+.|.+.-+.-.. .+.++.- ...++++|||.|+-++.+..      .+++.-|...++.....+      ...+.
T Consensus       176 --~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~leik~~ip~Pp~~e~yrvl  247 (1405)
T KOG3630|consen  176 --SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPSLEIKSEIPEPPVEENYRVL  247 (1405)
T ss_pred             --cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecccceeecccCCCcCCCccee
Confidence              45777776654332 2233222 37788999999999999984      677888888777543332      23566


Q ss_pred             EEEEecCC
Q 020756          216 QAEWKPVS  223 (321)
Q Consensus       216 ~~~w~P~~  223 (321)
                      ++.|--..
T Consensus       248 ~v~Wl~t~  255 (1405)
T KOG3630|consen  248 SVTWLSTQ  255 (1405)
T ss_pred             EEEEecce
Confidence            77775433

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=93.65  E-value=0.53  Score=48.88  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--C--eEEEEeCCCc--eeE--EeCCcCeeeEEEcCC
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--A--SATIFNKKCR--PIL--ELGSGPYNTVRWNPK  134 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~--~--~i~i~d~~~~--~~~--~~~~~~~~~~~~sPd  134 (321)
                      +|.+++.+|...+.+.+....+|...+|||||++|+.|.+.+.  +  .|.+-|+...  ...  ......|-.-+..++
T Consensus       330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~  409 (912)
T TIGR02171       330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLEN  409 (912)
T ss_pred             eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCC
Confidence            6899999998777787888999999999999999999666655  4  4666677432  222  224444545555666


Q ss_pred             CCeEE
Q 020756          135 GKFLC  139 (321)
Q Consensus       135 G~~l~  139 (321)
                      |..++
T Consensus       410 gdt~i  414 (912)
T TIGR02171       410 GDTVI  414 (912)
T ss_pred             CCeEE
Confidence            66443

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.24  E-value=0.63  Score=46.91  Aligned_cols=87  Identities=21%  Similarity=0.471  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCc-eeeeecCCCCCeEEEEEC--cCCCEEEEEEccCCCeEEEEeC-C---------CceeEEe-----CCc
Q 020756           63 KLNYLTTDGTH-EGLVPLRKEGPVHDVQWS--YSGSEFAVVYGFMPASATIFNK-K---------CRPILEL-----GSG  124 (321)
Q Consensus        63 ~l~~l~~~g~~-~~~v~l~~~~~v~~~~ws--P~g~~l~~~~g~~~~~i~i~d~-~---------~~~~~~~-----~~~  124 (321)
                      .|..++..+.. +....+...+.|.|+.|.  |+|+.+..+ |+ +..|.+|.. +         ..++..+     ...
T Consensus        52 ~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV-Gf-~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h  129 (631)
T PF12234_consen   52 ELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV-GF-PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPH  129 (631)
T ss_pred             EEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE-Ec-CcEEEEEEccchhhhcCCcccceeEEEEeecCCCC
Confidence            46677766543 222333568899999994  688876665 44 678888843 1         1233333     347


Q ss_pred             CeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756          125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus       125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ++.+..|-++|.+++.+|     ..+.|+|-.
T Consensus       130 ~Igds~Wl~~G~LvV~sG-----Nqlfv~dk~  156 (631)
T PF12234_consen  130 PIGDSIWLKDGTLVVGSG-----NQLFVFDKW  156 (631)
T ss_pred             CccceeEecCCeEEEEeC-----CEEEEECCC
Confidence            899999999999998887     588888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.09  E-value=5.3  Score=34.47  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=58.6

Q ss_pred             CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcC----------e-eeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           93 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP----------Y-NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        93 ~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~----------~-~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ++..+++.  ...+.+..+|.+ ++.+...  +...          . ..+.+. +| .|.+++   .++.+.-+|+.++
T Consensus       121 ~~~~~~~~--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~d~~tg  193 (238)
T PF13360_consen  121 DGDRLYVG--TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAVDLATG  193 (238)
T ss_dssp             ETTEEEEE--ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEEETTTT
T ss_pred             ecCEEEEE--eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEEECCCC
Confidence            37777764  447799999985 5554444  2211          1 223333 45 666655   4554443499999


Q ss_pred             eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          159 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       159 ~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      +.+-........ .....+|..|+.++.      ++.+.+||. +|+.+
T Consensus       194 ~~~w~~~~~~~~-~~~~~~~~~l~~~~~------~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  194 EKLWSKPISGIY-SLPSVDGGTLYVTSS------DGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEEECSS-EC-ECEECCCTEEEEEET------TTEEEEEETTTTEEE
T ss_pred             CEEEEecCCCcc-CCceeeCCEEEEEeC------CCEEEEEECCCCCEE
Confidence            866332212222 225677888887774      899999998 45544

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.07  E-value=0.12  Score=53.11  Aligned_cols=79  Identities=11%  Similarity=0.214  Sum_probs=63.6

Q ss_pred             ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCcee
Q 020756          116 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  191 (321)
Q Consensus       116 ~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~  191 (321)
                      ..+.+|  ++....+++||-+.++|+++.   ..|.|++|++.+|....+...|  .++.++=|-||..+++.+++-+  
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~---~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-- 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGS---HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-- 1166 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeee---ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC--
Confidence            345556  567788999999999999998   8899999999999888777776  6888999999999998886422  


Q ss_pred             ecCcEEEEee
Q 020756          192 IDNGIKIFHH  201 (321)
Q Consensus       192 ~d~~v~iw~~  201 (321)
                        --..+|+.
T Consensus      1167 --PlsaLW~~ 1174 (1516)
T KOG1832|consen 1167 --PLSALWDA 1174 (1516)
T ss_pred             --chHHHhcc
Confidence              13456766

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.01  E-value=0.52  Score=47.19  Aligned_cols=119  Identities=11%  Similarity=0.054  Sum_probs=77.2

Q ss_pred             eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEE
Q 020756           22 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVV  100 (321)
Q Consensus        22 ~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~  100 (321)
                      .+..||.....-=.....+++|++.+++          |  .||+.+..++........ ..+.+..+..|++....|. 
T Consensus        27 ~~~~~~~~~v~lTc~dst~~~l~~GsS~----------G--~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa-   93 (726)
T KOG3621|consen   27 LQPGFFPARVKLTCVDATEEYLAMGSSA----------G--SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAA-   93 (726)
T ss_pred             hccccCcceEEEEEeecCCceEEEeccc----------c--eEEEEecCchhhhcccccCccceEEEEEecchhHhhhh-
Confidence            3445554444444456777888776432          2  266666666544443322 3556677788887766655 


Q ss_pred             EccCCCeEEEEeCCC----cee--EEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756          101 YGFMPASATIFNKKC----RPI--LEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus       101 ~g~~~~~i~i~d~~~----~~~--~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                       |...+.|.+|-+..    ..+  ..+   |...|.++.|+++|..+.++.   ..|.|..--+++
T Consensus        94 -gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD---~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   94 -GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD---SQGKVVLTELDS  155 (726)
T ss_pred             -hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecC---CCceEEEEEech
Confidence             66678999997632    112  122   467899999999999999987   778888776665

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.98  E-value=7.1  Score=35.60  Aligned_cols=158  Identities=14%  Similarity=0.146  Sum_probs=93.0

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      .+...+.|||+.+.|..++.       +.    ..|.-++..|.-...+++.--..-..+.|.-+|.+.++  ...+..+
T Consensus        86 ~nvS~LTynp~~rtLFav~n-------~p----~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~--dER~~~l  152 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTN-------KP----AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV--DERDRAL  152 (316)
T ss_pred             ccccceeeCCCcceEEEecC-------CC----ceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE--ehhcceE
Confidence            45778999999998887632       11    23556677787777788775555567888877765444  4567788


Q ss_pred             EEEeCCCc--------eeEEeC-----CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe----EEE------eee
Q 020756          109 TIFNKKCR--------PILELG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLG------TTR  165 (321)
Q Consensus       109 ~i~d~~~~--------~~~~~~-----~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~----~i~------~~~  165 (321)
                      +++.+...        ....++     +....-++|.|..+.|.++-..+ --.|+.|+.....    ...      .+.
T Consensus       153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~~~~~~f  231 (316)
T COG3204         153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPTADRDLF  231 (316)
T ss_pred             EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCcccccceE
Confidence            88866322        122332     34556799999998888876222 1244444422110    000      111


Q ss_pred             CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          166 AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       166 ~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      ...++.++|.+...+|+.-+.     .+..+.-.|..|+.
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~-----ESr~l~Evd~~G~~  266 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSD-----ESRRLLEVDLSGEV  266 (316)
T ss_pred             eeccccceecCCCCcEEEEec-----CCceEEEEecCCCe
Confidence            125566788875444444442     34445556666654

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=92.98  E-value=3.5  Score=41.94  Aligned_cols=149  Identities=15%  Similarity=0.233  Sum_probs=86.7

Q ss_pred             ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc--
Q 020756           25 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG--  102 (321)
Q Consensus        25 ~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g--  102 (321)
                      ..+......+.|+|+|..+++...     .+..   ...+|++...+    .+ ..+...+....|+|+|+.+++...  
T Consensus        56 ~~~~~~~~~~~~spdg~~~~~~~~-----~~~~---~~~l~l~~~~g----~~-~~~~~~v~~~~~~~~g~~~~~~~~~~  122 (620)
T COG1506          56 LTFGGGVSELRWSPDGSVLAFVST-----DGGR---VAQLYLVDVGG----LI-TKTAFGVSDARWSPDGDRIAFLTAEG  122 (620)
T ss_pred             cccCCcccccccCCCCCEEEEEec-----cCCC---cceEEEEecCC----ce-eeeecccccceeCCCCCeEEEEeccc
Confidence            345667788999999999998741     1111   34577777663    11 134567889999999999888310  


Q ss_pred             --cCCCe-------EEEE-eCCC-c-----------eeEEe--CCcCeeeEEEcCCCCeEEEEccCCC-C---CcEEEEE
Q 020756          103 --FMPAS-------ATIF-NKKC-R-----------PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL-P---GDMAFWD  154 (321)
Q Consensus       103 --~~~~~-------i~i~-d~~~-~-----------~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~-~---g~i~iwD  154 (321)
                        ..++.       +.+| +.++ +           .....  ....+....++++++.++....... +   ....+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (620)
T COG1506         123 ASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLI  202 (620)
T ss_pred             ccccCCceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEe
Confidence              11111       2222 2222 1           11111  3445566677777777777653211 2   2344444


Q ss_pred             CCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEc
Q 020756          155 YVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       155 ~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s  186 (321)
                      ..++......... .+..+.|.++|+.++....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~  235 (620)
T COG1506         203 EGNGELESLTPGEGSISKLAFDADGKSIALLGT  235 (620)
T ss_pred             cCCCceEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence            4466555555543 6778899999997666554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.86  E-value=3.1  Score=39.26  Aligned_cols=139  Identities=14%  Similarity=0.152  Sum_probs=75.6

Q ss_pred             CeEEEEECcCCCEEEEEEc---------cCCC-eEEEEeC-C--Cc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           84 PVHDVQWSYSGSEFAVVYG---------FMPA-SATIFNK-K--CR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g---------~~~~-~i~i~d~-~--~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      ....++|.++|+.+++...         ...+ +|.+++- .  +.  ....|  +......+.+.++| ++++.     
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~-----   88 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT-----   88 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-----
Confidence            3457899999997766321         1122 6776643 2  22  23444  33445779999999 44432     


Q ss_pred             CCcEEEE-ECCC-------CeEE-Eeee------CCCeeeEEEccCCCEEEEEEcC-------C------ceeecCcEEE
Q 020756          147 PGDMAFW-DYVD-------GKQL-GTTR------AECSVTSEWSPDGRYFMTATTA-------P------RLQIDNGIKI  198 (321)
Q Consensus       147 ~g~i~iw-D~~~-------~~~i-~~~~------~~~~~~~~wSpdG~~l~t~~s~-------~------rl~~d~~v~i  198 (321)
                      ...|..| |.+.       .+.+ ..+.      +|....+.|.|||.+.++-++.       +      .....+.+.-
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            2456655 4431       1222 2222      2346679999999877765531       0      0111234555


Q ss_pred             EeecCcee--EEeccCceEEEEEecCCCCCCC
Q 020756          199 FHHNGSLF--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       199 w~~~g~~l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ++.+|..+  +.......+.+.|+|+....++
T Consensus       169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             EecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence            55565544  2233445678899997655444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=92.85  E-value=4.2  Score=37.71  Aligned_cols=40  Identities=15%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      ..+.++.+|  .++.+.|.+..+.|.++.+      |..+..||+-|.
T Consensus       188 ~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~------d~~vi~wdigg~  229 (404)
T KOG1409|consen  188 QLITTFNGHTGEVTCLKWDPGQRLLFSGAS------DHSVIMWDIGGR  229 (404)
T ss_pred             ceEEEEcCcccceEEEEEcCCCcEEEeccc------cCceEEEeccCC
Confidence            456677776  7888999999998999885      999999999553

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.74  E-value=0.32  Score=29.71  Aligned_cols=31  Identities=23%  Similarity=0.589  Sum_probs=20.6

Q ss_pred             CcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756          123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus       123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ...-....|||||+.|++++..+..|...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4456679999999999998844322555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.70  E-value=0.25  Score=30.23  Aligned_cols=27  Identities=26%  Similarity=0.690  Sum_probs=20.0

Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeec--CcEEEE
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQID--NGIKIF  199 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d--~~v~iw  199 (321)
                      ......|||||++|+.++..     +  +...||
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~-----~~~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNR-----NDRGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEEC-----T--SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecC-----CCCCCcCEE
Confidence            56678999999999999963     4  556666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=92.69  E-value=0.72  Score=47.02  Aligned_cols=93  Identities=15%  Similarity=0.343  Sum_probs=58.1

Q ss_pred             eeeEEEcCCCCeEEEEccCCC--CCcEEEEECCCCeEEEee-----eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEE
Q 020756          126 YNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGTT-----RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  198 (321)
Q Consensus       126 ~~~~~~sPdG~~l~~~g~~n~--~g~i~iwD~~~~~~i~~~-----~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~i  198 (321)
                      -..++|-|+|+.+++.+....  .-.|.|+..+ |-.-..+     ........+|.-...-++.+.       .|.+++
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-------~n~~~l  320 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-------GNLLKL  320 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHhh-------cceEEE
Confidence            345899999999999873222  1256666543 2111111     112445578888877777777       889999


Q ss_pred             EeecCcee---EEeccCceEEEEEecCCCCC
Q 020756          199 FHHNGSLF---FKKMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       199 w~~~g~~l---~~~~~~~~~~~~w~P~~~~~  226 (321)
                      |.......   .....+.+.-+.|+|.....
T Consensus       321 wttkNyhWYLK~e~~ip~~s~vkwhpe~~nT  351 (1243)
T COG5290         321 WTTKNYHWYLKVERQIPGISYVKWHPEEKNT  351 (1243)
T ss_pred             EEccceEEEEEEeecCCCcceeeeccccCcE
Confidence            97543322   33345677778999976543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.68  E-value=3.9  Score=38.13  Aligned_cols=142  Identities=11%  Similarity=0.189  Sum_probs=74.7

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCce---eEEe------CCcCeeeEEEcCC----CCeEEEEcc---CC--C
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPK----GKFLCLAGF---GN--L  146 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~---~~~~------~~~~~~~~~~sPd----G~~l~~~g~---~n--~  146 (321)
                      -..++|.|||+.|+.   ...++|.+++..+..   +..+      +......++++|+    +.+.++...   .+  .
T Consensus         4 P~~~a~~pdG~l~v~---e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA---ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETTSCEEEE---ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCCCcEEEE---eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357999999987776   457899999954443   2232      3456678999995    443333321   00  1


Q ss_pred             CCcEEEEECCCC-------e-EEEeee-----CCCeeeEEEccCCCEEEEEEcCCc------ee-ecCcEEEEeecCc--
Q 020756          147 PGDMAFWDYVDG-------K-QLGTTR-----AECSVTSEWSPDGRYFMTATTAPR------LQ-IDNGIKIFHHNGS--  204 (321)
Q Consensus       147 ~g~i~iwD~~~~-------~-~i~~~~-----~~~~~~~~wSpdG~~l~t~~s~~r------l~-~d~~v~iw~~~g~--  204 (321)
                      ...|.-|.+...       + .+....     .|....+.|.|||.++++.++.--      +. ..+.|.-.+.+|.  
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence            124444444332       1 122222     246677999999977776664221      00 1122333344554  


Q ss_pred             -------------eeEEeccCceEEEEEecCCCCCCCC
Q 020756          205 -------------LFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 -------------~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                                   .++..-....+.++|.|....++..
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~  198 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAA  198 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEE
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEE
Confidence                         2233444567789999985566644

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=92.59  E-value=0.035  Score=54.78  Aligned_cols=140  Identities=15%  Similarity=0.217  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEECcC-CCEEEEEEc--cCCCeEEEEeCCCc---eeEE--e---CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           80 RKEGPVHDVQWSYS-GSEFAVVYG--FMPASATIFNKKCR---PILE--L---GSGPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        80 ~~~~~v~~~~wsP~-g~~l~~~~g--~~~~~i~i~d~~~~---~~~~--~---~~~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      .+..++++++|++- ...||....  ..+..+.|||+...   +.-+  |   -....++++|--|-++|+++.   ...
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm---~sr  176 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM---TSR  176 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccc---ccc
Confidence            45678999999984 455655211  23447899998432   2221  1   123566888987776666665   456


Q ss_pred             cEEEEECC-CCeEEEeeeCCCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEee-c--Ccee----EE--eccCceEEE
Q 020756          149 DMAFWDYV-DGKQLGTTRAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHH-N--GSLF----FK--KMFDKLFQA  217 (321)
Q Consensus       149 ~i~iwD~~-~~~~i~~~~~~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~-~--g~~l----~~--~~~~~~~~~  217 (321)
                      .+.++|++ +......+....+..+..+| .+.|++...       |+.+-|||. .  ...+    ..  ..++.+..+
T Consensus       177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~  249 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL  249 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-------cCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence            89999987 32333333333445567777 777877666       999999993 1  1111    11  123469999


Q ss_pred             EEecCCCCCCCC
Q 020756          218 EWKPVSPDKFGD  229 (321)
Q Consensus       218 ~w~P~~~~~~~~  229 (321)
                      +|.|..+.++..
T Consensus       250 aycPtrtglla~  261 (783)
T KOG1008|consen  250 AYCPTRTGLLAV  261 (783)
T ss_pred             EeccCCcchhhh
Confidence            999988877754

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.29  E-value=0.98  Score=39.54  Aligned_cols=62  Identities=13%  Similarity=0.244  Sum_probs=45.1

Q ss_pred             EcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee----------------eCCCeeeEEEccCCCEEEEEEcCCceeecC
Q 020756          131 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------------RAECSVTSEWSPDGRYFMTATTAPRLQIDN  194 (321)
Q Consensus       131 ~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~----------------~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~  194 (321)
                      ...+|++|++..   .+|.+++||+.+++.+...                ....+..+..+.+|.-|++-+       ++
T Consensus        18 l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-------ng   87 (219)
T PF07569_consen   18 LECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-------NG   87 (219)
T ss_pred             EEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------CC
Confidence            445688888877   8899999999988765432                223667788888888887766       56


Q ss_pred             cEEEEeec
Q 020756          195 GIKIFHHN  202 (321)
Q Consensus       195 ~v~iw~~~  202 (321)
                      ....||.+
T Consensus        88 ~~y~y~~~   95 (219)
T PF07569_consen   88 DSYSYSPD   95 (219)
T ss_pred             CEEEeccc
Confidence            66777654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.13  E-value=2.4  Score=31.47  Aligned_cols=53  Identities=17%  Similarity=0.163  Sum_probs=35.9

Q ss_pred             CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          146 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       146 ~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ..|.+.-||..+++....... .....++.|+|+.+++.+-+.     ...|.=|.+.|
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~-----~~Ri~rywl~G   88 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG-----RYRILRYWLKG   88 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG-----GTEEEEEESSS
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc-----CceEEEEEEeC
Confidence            468899999999875444444 377889999999999999863     44444444454

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.80  E-value=7.8  Score=37.49  Aligned_cols=100  Identities=11%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee---E----EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---L----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~---~----~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      ..+|+|.++.||+|.+.+|+-  ..+..+.+++..++.-   .    ..+...+-.+.|+.. +-|++..    +..|.+
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQ--R~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~----~~G~e~  136 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQ--RTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT----DQGIEF  136 (657)
T ss_pred             cCCCceeEEEeccCcceEEEE--ecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe----cCCeEE
Confidence            368899999999999999995  6678999998743311   1    114455777889866 6666664    345777


Q ss_pred             EECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756          153 WDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       153 wD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s  186 (321)
                      |-+... ..+...+.+  ++.=..|.|+-+.++.+++
T Consensus       137 y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  137 YQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            765543 222223333  5666789999998888775

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.61  E-value=1.2  Score=46.98  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=58.4

Q ss_pred             ccCCCeEEEEeCCCcee--EE-e-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-----CeeeE
Q 020756          102 GFMPASATIFNKKCRPI--LE-L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTS  172 (321)
Q Consensus       102 g~~~~~i~i~d~~~~~~--~~-~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-----~~~~~  172 (321)
                      |...+.+-.+|..++.-  +. . ..+++.+++|+-+|++++.|-   .+|.|.+||+..++.++.+..+     .+..+
T Consensus       105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v  181 (1206)
T KOG2079|consen  105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAPVTGVIFV  181 (1206)
T ss_pred             EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence            45566788888876522  11 1 367899999999999988876   6799999999988776665543     45556


Q ss_pred             EEccCCCEEEEEE
Q 020756          173 EWSPDGRYFMTAT  185 (321)
Q Consensus       173 ~wSpdG~~l~t~~  185 (321)
                      -|..++..++++.
T Consensus       182 ~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  182 GRTSQNSKLLTSD  194 (1206)
T ss_pred             EEeCCCcEEEEcc
Confidence            7777777555544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.32  E-value=14  Score=35.42  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=67.3

Q ss_pred             EEEEEcCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEeC----CcCeeeEEEcC
Q 020756           64 LNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELG----SGPYNTVRWNP  133 (321)
Q Consensus        64 l~~l~~~g~~~-~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~~----~~~~~~~~~sP  133 (321)
                      +|.-...|... ..+.......+.++.|.++|..+++.   ..+.+..-+-.+.     ......    ...+..+.|.+
T Consensus       261 ~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g---~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~  337 (398)
T PLN00033        261 FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT---RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS  337 (398)
T ss_pred             EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe---CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcC
Confidence            44444445432 45666667789999999999877662   3444433332332     122221    12367889999


Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCeEEEeee-----CCCeeeEEEccCCCEEEEEE
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~-----~~~~~~~~wSpdG~~l~t~~  185 (321)
                      ++..++++    ..|.|... .+.++.-....     ..+.+.+.|.++++.++++.
T Consensus       338 d~~~~a~G----~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~  389 (398)
T PLN00033        338 KKEAWAAG----GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN  389 (398)
T ss_pred             CCcEEEEE----CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence            88877776    44655544 33443322221     12567889999888888876

>PRK13684 Ycf48-like protein; Provisional

Probab=90.90  E-value=9.5  Score=35.55  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE-EEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT-IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~-i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      ..+.....+.++++.+.|++..+++  +. .+.+. .+|-.+......   ....++.+.+.|+|+.++++.    .|.+
T Consensus       165 ~~~~~~~~g~~~~i~~~~~g~~v~~--g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~  237 (334)
T PRK13684        165 EALVEDAAGVVRNLRRSPDGKYVAV--SS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQI  237 (334)
T ss_pred             eeCcCCCcceEEEEEECCCCeEEEE--eC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEE
Confidence            3343344678999999999876655  33 33332 223223333333   345678899999999877754    3555


Q ss_pred             EEEECCCCeE---EEee---eCCCeeeEEEccCCCEEEEEE
Q 020756          151 AFWDYVDGKQ---LGTT---RAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       151 ~iwD~~~~~~---i~~~---~~~~~~~~~wSpdG~~l~t~~  185 (321)
                      .+=..+.+..   +...   ....++.+.+.|+++.++++.
T Consensus       238 ~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~  278 (334)
T PRK13684        238 RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG  278 (334)
T ss_pred             EEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence            4323344422   2211   112466788999988776655

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.84  E-value=13  Score=38.95  Aligned_cols=90  Identities=17%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC------ceeEE-------e-----CCcCeeeEEEcCCCCeEEEEc
Q 020756           82 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC------RPILE-------L-----GSGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        82 ~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~------~~~~~-------~-----~~~~~~~~~~sPdG~~l~~~g  142 (321)
                      ..+.-||+|+| +.++||++  +..|...|||+..      ..+..       +     .......+.|.++-+.|+++.
T Consensus       145 g~~~aDv~FnP~~~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~  222 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN  222 (765)
T ss_pred             CCccceEEeccCccceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence            34788999999 55689998  5678999999921      11111       1     112334688999988888884


Q ss_pred             cCCCCCcEEEEECCCCeEEE-eeeC---CCeeeEEEccC
Q 020756          143 FGNLPGDMAFWDYVDGKQLG-TTRA---ECSVTSEWSPD  177 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~~~i~-~~~~---~~~~~~~wSpd  177 (321)
                          ...+.++|+++..... ....   ..+.++.=+|+
T Consensus       223 ----r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  223 ----RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             ----CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence                4679999998764322 1111   25555655655

These proteins are found in fungi.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.78  E-value=0.03  Score=53.73  Aligned_cols=137  Identities=12%  Similarity=0.258  Sum_probs=91.7

Q ss_pred             ccceEEeCCCCCeeEEEE-EecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           30 STVQLNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~-~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      ......|-+.|..+++.+ .+.     .+||          +...+....+...+...+++|.-+|..+++.... .+.+
T Consensus        36 ~pi~~~w~~e~~nlavaca~ti-----v~~Y----------D~agq~~le~n~tg~aldm~wDkegdvlavlAek-~~pi   99 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTI-----VIYY----------DKAGQVILELNPTGKALDMAWDKEGDVLAVLAEK-TGPI   99 (615)
T ss_pred             ccceeeEecCCCceehhhhhhH-----HHhh----------hhhcceecccCCchhHhhhhhccccchhhhhhhc-CCCe
Confidence            456789999888877642 111     1111          1111233334455677789999999988887433 3579


Q ss_pred             EEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEE
Q 020756          109 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMT  183 (321)
Q Consensus       109 ~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t  183 (321)
                      .+||+..+-...+   ++..-.-+.|++-+..++.+.   ..|.+.|++..+-+.+.....|  .+++++|.+.+.-+..
T Consensus       100 ylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  100 YLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             eechhhhhhHHHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence            9999965543333   233333489999999999886   8899999998766555444323  7899999999887665


Q ss_pred             EE
Q 020756          184 AT  185 (321)
Q Consensus       184 ~~  185 (321)
                      ..
T Consensus       177 dc  178 (615)
T KOG2247|consen  177 DC  178 (615)
T ss_pred             Cc
Confidence            54

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.53  E-value=11  Score=32.78  Aligned_cols=57  Identities=11%  Similarity=0.182  Sum_probs=40.4

Q ss_pred             CEEEEEEccCCCeEEEEeCC---CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCC---cEEEE
Q 020756           95 SEFAVVYGFMPASATIFNKK---CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPG---DMAFW  153 (321)
Q Consensus        95 ~~l~~~~g~~~~~i~i~d~~---~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g---~i~iw  153 (321)
                      +.|+++  ....+|.+|++.   +..+.+| --+.+..+.|+..|.+|++.--.+...   .+++|
T Consensus        29 d~Lfva--~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVA--ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEE--cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            444443  234589999985   4466677 357899999999999999987555555   55554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=90.42  E-value=12  Score=33.21  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeE---------------Ee-CCcCeeeEE--EcCCCC-eEEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL---------------EL-GSGPYNTVR--WNPKGK-FLCL  140 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~---------------~~-~~~~~~~~~--~sPdG~-~l~~  140 (321)
                      +..+|..+..-|+-+.|++..   ++.+.+|++..- ...               .+ ....+..++  =.+.+. +|++
T Consensus        34 ~~~~I~ql~vl~~~~~llvLs---d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v  110 (275)
T PF00780_consen   34 KLSSITQLSVLPELNLLLVLS---DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV  110 (275)
T ss_pred             ecceEEEEEEecccCEEEEEc---CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE
Confidence            444599999999888777764   378999987321 000               12 223344443  113343 4444


Q ss_pred             EccCCCCCcEEEEECCC----C-eEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          141 AGFGNLPGDMAFWDYVD----G-KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~----~-~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +    ....|.+|....    . +.+..+.-+ .+..++|.  +..|+.+.       .+.+.+.|++
T Consensus       111 a----~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-------~~~f~~idl~  165 (275)
T PF00780_consen  111 A----VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-------SKGFYLIDLN  165 (275)
T ss_pred             E----ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-------CCceEEEecC
Confidence            4    345788776543    2 345555544 67888998  67777777       6778888886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=90.35  E-value=19  Score=37.57  Aligned_cols=135  Identities=20%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC-CC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EG   83 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~-~~   83 (321)
                      +.+++++.......-++....|.........-+||..++++.... ....-.+|++.-.++.+....   ......+ .+
T Consensus        73 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~d~~~~~~~~~~-~~~~rhs~~~~~~~~~~~~~~---~~~~~~~~~~  148 (755)
T KOG2100|consen   73 GNIVVSNALYGLSSVPLTNSTFGRLRYSSDLISPDRKYILLGRNY-KKRFRHSYTAKYHLYDLNTGE---KLHPPEYEGS  148 (755)
T ss_pred             CceEeecccCcccEEEecccchhhccccccccChhhhhheeccCc-ccccceeeEEEEEEEEcCCCC---cccCcccCCC
Confidence            455666666532122344444432221113567788887775321 122333555655555554444   1222223 34


Q ss_pred             CeEEEEECcCCCEEEEEEccC-CC-------eE-EEEeCCCceeEEe-C--------CcCeeeEEEcCCCCeEEEEcc
Q 020756           84 PVHDVQWSYSGSEFAVVYGFM-PA-------SA-TIFNKKCRPILEL-G--------SGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~-~~-------~i-~i~d~~~~~~~~~-~--------~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      .+..+.|+|.|+.++.++... ..       .+ .+++-....++.. .        -.....+.|+|+|.+++...+
T Consensus       149 ~~~~~~wsp~~~~l~yv~~~niy~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~  226 (755)
T KOG2100|consen  149 KIQYASWSPLGNDLAYVLHNNIYYQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASF  226 (755)
T ss_pred             eeEEEEEcCCCCEEEEEEecccccccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEe
Confidence            568999999999988875421 00       11 1222111112221 1        123446789999999997754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.82  E-value=3  Score=43.03  Aligned_cols=68  Identities=22%  Similarity=0.364  Sum_probs=45.3

Q ss_pred             CeeeEEEcCCCCeEEEEccCCCCCcEEEEECC----------CCe--EEE-e-------ee-C--CCeeeEEEccC---C
Q 020756          125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----------DGK--QLG-T-------TR-A--ECSVTSEWSPD---G  178 (321)
Q Consensus       125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~----------~~~--~i~-~-------~~-~--~~~~~~~wSpd---G  178 (321)
                      .|..+..||+|++|++.|   .. .|.|..+-          .++  ..+ +       +. .  ..+..+.|+|.   +
T Consensus        86 ~v~~i~~n~~g~~lal~G---~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVG---PR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eEEEEEECCCCCEEEEEc---CC-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            577899999999999998   33 33333321          111  111 1       11 1  15667999996   5


Q ss_pred             CEEEEEEcCCceeecCcEEEEeec
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .+|+.=++      ||.+++||+.
T Consensus       162 ~~l~vLts------dn~lR~y~~~  179 (717)
T PF10168_consen  162 SHLVVLTS------DNTLRLYDIS  179 (717)
T ss_pred             CeEEEEec------CCEEEEEecC
Confidence            88887775      9999999984

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.57  E-value=3.5  Score=39.65  Aligned_cols=81  Identities=12%  Similarity=0.142  Sum_probs=49.9

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcCeeeEEEcCC-----------------CCeEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPK-----------------GKFLCL  140 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~sPd-----------------G~~l~~  140 (321)
                      ...+.++..+|+++..++.  +.-|+|.|+|+....+..+    .+..+..+.-...                 ..+|++
T Consensus       307 ~R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3457889999998877774  4457999999865433322    1222221111111                 123433


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeC
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRA  166 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~  166 (321)
                      -.  -..|-|+||++++|.++..+.-
T Consensus       385 ya--prRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  385 YA--PRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             Ee--ccCCeEEEEecCCCCEEEEEEe
Confidence            22  2689999999999988887654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.35  E-value=18  Score=33.59  Aligned_cols=100  Identities=14%  Similarity=0.153  Sum_probs=50.3

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee------eecCCCCCeEEEEECcC---CCEEEEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL------VPLRKEGPVHDVQWSYS---GSEFAVVY  101 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~------v~l~~~~~v~~~~wsP~---g~~l~~~~  101 (321)
                      -..|.|.|+|+.++.-      +.|+       |+++..++.....      +....+....+++++|+   ..+|.+.+
T Consensus         4 P~~~a~~pdG~l~v~e------~~G~-------i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~   70 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAE------RSGR-------IWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYY   70 (331)
T ss_dssp             EEEEEEETTSCEEEEE------TTTE-------EEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred             ceEEEEeCCCcEEEEe------CCce-------EEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEE
Confidence            4578999998665431      2233       5566645543111      11224667899999994   34555554


Q ss_pred             ccC-----CC--eEEEEeCCCc--------eeE-Ee-C----CcCeeeEEEcCCCCeEEEEcc
Q 020756          102 GFM-----PA--SATIFNKKCR--------PIL-EL-G----SGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus       102 g~~-----~~--~i~i~d~~~~--------~~~-~~-~----~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      ...     ..  .|.-|.+...        .+. .+ .    ...-..+.|.|||.+.+..|.
T Consensus        71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            321     11  2333333111        111 11 1    234467999999977777664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.25  E-value=2.4  Score=25.91  Aligned_cols=40  Identities=15%  Similarity=0.138  Sum_probs=28.2

Q ss_pred             CCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEE
Q 020756          133 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW  174 (321)
Q Consensus       133 PdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~w  174 (321)
                      |+|++|.++..  ..+.|.++|..+++.+..+.-. ....+.|
T Consensus         1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            78898888763  3589999999888877766543 3344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.20  E-value=12  Score=36.21  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=63.2

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCc----cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCC--ceee
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCS----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGT--HEGL   76 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~----~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~--~~~~   76 (321)
                      .++.+|++..   ++.+....+....    .+.+.|+|+..+-.+.+.           -..+||.+-.  ++.  .++.
T Consensus       222 ~~l~vWD~~~---r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a-----------Lss~i~~~~k~~~g~W~a~kV  287 (461)
T PF05694_consen  222 HSLHVWDWST---RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA-----------LSSSIWRFYKDDDGEWAAEKV  287 (461)
T ss_dssp             -EEEEEETTT---TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-------------EEEEEEEE-ETTEEEEEEE
T ss_pred             CeEEEEECCC---CcEeeEEecCCCCCceEEEEecCCCCccceEEEEe-----------ccceEEEEEEcCCCCeeeeEE
Confidence            5789999999   8889888887543    345566777766555432           1222343322  221  1223


Q ss_pred             eecCC------------------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeE--Ee--C----------
Q 020756           77 VPLRK------------------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPIL--EL--G----------  122 (321)
Q Consensus        77 v~l~~------------------~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~--~~--~----------  122 (321)
                      +.+.-                  ..-|+|+..|.|.++|.+. .-+.+.++.||+..  ++..  ++  +          
T Consensus       288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~  366 (461)
T PF05694_consen  288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPV  366 (461)
T ss_dssp             EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TT
T ss_pred             EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcc
Confidence            33321                  2457999999999988886 56788999999942  2222  21  1          


Q ss_pred             ------CcCeeeEEEcCCCCeEEEEc
Q 020756          123 ------SGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus       123 ------~~~~~~~~~sPdG~~l~~~g  142 (321)
                            .+..+.+..|-||+.|.++.
T Consensus       367 v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  367 VKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             S------S----EEE-TTSSEEEEE-
T ss_pred             ccccccCCCCCeEEEccCCeEEEEEe
Confidence                  11235688888999887765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=89.02  E-value=2.9  Score=43.63  Aligned_cols=87  Identities=8%  Similarity=0.018  Sum_probs=54.6

Q ss_pred             EEEEEEccCCCeEEEEeCCCceeEE--e-CCcCeeeEEEcCCCCeEEE-EccCC--CCCcEEEEECCCC-eEEEeeeC--
Q 020756           96 EFAVVYGFMPASATIFNKKCRPILE--L-GSGPYNTVRWNPKGKFLCL-AGFGN--LPGDMAFWDYVDG-KQLGTTRA--  166 (321)
Q Consensus        96 ~l~~~~g~~~~~i~i~d~~~~~~~~--~-~~~~~~~~~~sPdG~~l~~-~g~~n--~~g~i~iwD~~~~-~~i~~~~~--  166 (321)
                      .|+++. ...+.|.+-|..+.....  + +..++.+.+|||||++|+. .+|..  ....|++-|+.+. ..+..+.-  
T Consensus       320 kiAfv~-~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~  398 (912)
T TIGR02171       320 KLAFRN-DVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN  398 (912)
T ss_pred             eEEEEE-cCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence            455553 233588888887643332  4 6788999999999999999 67655  3456999998753 22222221  


Q ss_pred             CCeeeEEEccCCCEEEE
Q 020756          167 ECSVTSEWSPDGRYFMT  183 (321)
Q Consensus       167 ~~~~~~~wSpdG~~l~t  183 (321)
                      ..|..-....+|...++
T Consensus       399 aaiprwrv~e~gdt~iv  415 (912)
T TIGR02171       399 AAIPRWRVLENGDTVIV  415 (912)
T ss_pred             ccccceEecCCCCeEEE
Confidence            24444445566655544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.93  E-value=1.5  Score=27.82  Aligned_cols=30  Identities=17%  Similarity=0.273  Sum_probs=24.7

Q ss_pred             CeeeEEEcCCCC---eEEEEccCCCCCcEEEEECCC
Q 020756          125 PYNTVRWNPKGK---FLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus       125 ~~~~~~~sPdG~---~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      .+.++.|||...   +|+.+.   ..|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E---~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAE---HQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEc---cCCeEEEEEccc
Confidence            567899998544   888887   779999999985

It contains a characteristic DLL sequence motif.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.71  E-value=20  Score=36.79  Aligned_cols=93  Identities=10%  Similarity=0.061  Sum_probs=59.0

Q ss_pred             cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ..+.-+..||++++|++-.   ..|.|.+-+.+..+++..+..  + ..-+++|.-+..   ...+     .++.+.+..
T Consensus       217 ~~~~ki~VS~n~~~laLyt---~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnda---Vvl~-----~e~~l~lvg  285 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYT---ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDA---VVLS-----WEVNLMLVG  285 (829)
T ss_pred             ceEEEEEEcCCcceEEEEe---cCCcEEEEecchhhhhhccCCCCCCchHhceeecCCc---eEEE-----EeeeEEEEc
Confidence            4566788999999999987   789999988877777776653  2 334688977652   1111     356666666


Q ss_pred             ecCcee-EEeccCceEEEEEecCCCCCCCC
Q 020756          201 HNGSLF-FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       201 ~~g~~l-~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      -.|..+ +-.....+  +.=-+|+-.+++.
T Consensus       286 p~gd~V~f~yd~t~~--l~~E~DGVRI~t~  313 (829)
T KOG2280|consen  286 PPGDSVQFYYDETAI--LSAEVDGVRIITS  313 (829)
T ss_pred             CCCCccccccCCCce--eeeccCeeEEecc
Confidence            566555 22222221  4444566667765

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.58  E-value=26  Score=34.28  Aligned_cols=102  Identities=12%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeec------CCCCCeEEEEECcCC------CE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPL------RKEGPVHDVQWSYSG------SE   96 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l------~~~~~v~~~~wsP~g------~~   96 (321)
                      .-..|.|.|+|+.|+.- .    ..|       .|+.++..+.... ...+      .-++...+++++|+=      .+
T Consensus        31 ~Pw~maflPDG~llVtE-R----~~G-------~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~   98 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTE-R----ATG-------KILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY   98 (454)
T ss_pred             CceEEEEcCCCeEEEEE-e----cCC-------EEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence            45688999999655432 1    012       2555544332111 1111      136778999999873      35


Q ss_pred             EEEEEcc--------CCCeEEEEeCCC--------ceeEE-e---CCcCeeeEEEcCCCCeEEEEcc
Q 020756           97 FAVVYGF--------MPASATIFNKKC--------RPILE-L---GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        97 l~~~~g~--------~~~~i~i~d~~~--------~~~~~-~---~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      |.+.|..        ....|.-|.+..        ..+.. +   ....-..|.|.|||.+.++.|-
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence            6665522        122444454421        11221 2   1223457899999997777663

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.58  E-value=0.071  Score=51.24  Aligned_cols=137  Identities=18%  Similarity=0.238  Sum_probs=95.9

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  164 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~  164 (321)
                      ....|-|.+..+++.  +.+..+..||..++.+... ..+..-.++|.-+|..+++...  ..+.+++||+.+.. ...+
T Consensus        38 i~~~w~~e~~nlava--ca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~ey-tqqL  112 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVA--CANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEY-TQQL  112 (615)
T ss_pred             ceeeEecCCCceehh--hhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhh-HHHH
Confidence            357899988887774  5556788899988877776 4566667889989987777553  45899999997542 1111


Q ss_pred             eC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--eeEEe-ccCceEEEEEecCCCCCCCCcchh
Q 020756          165 RA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LFFKK-MFDKLFQAEWKPVSPDKFGDISEL  233 (321)
Q Consensus       165 ~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l~~~-~~~~~~~~~w~P~~~~~~~~~~~~  233 (321)
                      +.   +.-.-+.||+-+..++.+.      ..+.+.|++-...  ....+ |.....+++|.+.+-.+....+++
T Consensus       113 E~gg~~s~sll~wsKg~~el~ig~------~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~  181 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTPELVIGN------NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNT  181 (615)
T ss_pred             hccCcchHHHHhhccCCccccccc------cccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHH
Confidence            11   2222378999999999887      5888999886322  22334 778889999999776555554433

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.50  E-value=14  Score=32.74  Aligned_cols=131  Identities=11%  Similarity=0.116  Sum_probs=73.9

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCC-------CeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMP-------ASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~-------~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      +...+|..-+|+|++++-.-.+.+       +.++.|-.....-.-+ .-.--|.++|+-+.+.+.....  ++-+|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc--CceEEeee
Confidence            556778888999998653211111       2233333222211112 1234477999999998888763  45677667


Q ss_pred             E--CCCC-----eEEEeeeC------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe--ccCceEEE
Q 020756          154 D--YVDG-----KQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQA  217 (321)
Q Consensus       154 D--~~~~-----~~i~~~~~------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~--~~~~~~~~  217 (321)
                      |  ..+|     +.+..++.      ...-.++...+|.+.++.-+      .+++.-.|. +|++|.+.  ....+.++
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------g~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------GGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------CcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence            7  4444     22222222      12222445667887777664      566666665 67777443  45577777


Q ss_pred             EEe
Q 020756          218 EWK  220 (321)
Q Consensus       218 ~w~  220 (321)
                      +|-
T Consensus       260 cFg  262 (310)
T KOG4499|consen  260 CFG  262 (310)
T ss_pred             Eec
Confidence            774

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=87.90  E-value=9  Score=35.97  Aligned_cols=97  Identities=13%  Similarity=0.197  Sum_probs=54.2

Q ss_pred             CCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-Ce
Q 020756           94 GSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS  169 (321)
Q Consensus        94 g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~  169 (321)
                      +..+++  +..++.+..+|. .++.+-.+  +......+..  ++..|++++   .++.|+.+|..+|+.+-..... .+
T Consensus        65 ~~~v~v--~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~  137 (377)
T TIGR03300        65 GGKVYA--ADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT---EKGEVIALDAEDGKELWRAKLSSEV  137 (377)
T ss_pred             CCEEEE--ECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc---CCCEEEEEECCCCcEeeeeccCcee
Confidence            455555  355678888886 45555443  2222222222  466777776   7799999999999876544332 11


Q ss_pred             eeEEEcc--CCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          170 VTSEWSP--DGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       170 ~~~~wSp--dG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      .   -+|  ++..++.++.      ++.+..||. +|+.+
T Consensus       138 ~---~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~  168 (377)
T TIGR03300       138 L---SPPLVANGLVVVRTN------DGRLTALDAATGERL  168 (377)
T ss_pred             e---cCCEEECCEEEEECC------CCeEEEEEcCCCcee
Confidence            1   111  2334444442      666777776 45544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.74  E-value=24  Score=34.14  Aligned_cols=128  Identities=14%  Similarity=0.194  Sum_probs=60.7

Q ss_pred             CCeEEEEECc-----------CCCEEEEEEccCCCeEEEEeCCCc----ee-EEeC---------CcCeeeEEEcCCCCe
Q 020756           83 GPVHDVQWSY-----------SGSEFAVVYGFMPASATIFNKKCR----PI-LELG---------SGPYNTVRWNPKGKF  137 (321)
Q Consensus        83 ~~v~~~~wsP-----------~g~~l~~~~g~~~~~i~i~d~~~~----~~-~~~~---------~~~~~~~~~sPdG~~  137 (321)
                      +..|..-|+.           +.++|++ -+-...+|.|+|+..+    .+ +.+.         -..-.++.--|+|+.
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~-PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~i  143 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLIL-PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRI  143 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEE-EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--E
T ss_pred             CccccccCcccccccCCCCcccCCcEEe-eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccE
Confidence            4677788861           3344444 3666779999999643    22 2221         122345666799998


Q ss_pred             EEEEc---cCCCCCcEEEEECCCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEc-CC-------------ceeecCc
Q 020756          138 LCLAG---FGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATT-AP-------------RLQIDNG  195 (321)
Q Consensus       138 l~~~g---~~n~~g~i~iwD~~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s-~~-------------rl~~d~~  195 (321)
                      ++++-   .|+..|.+-++|-++.+.+...+..     ...++-|.|.-..++++.= .|             ..+..+.
T Consensus       144 mIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~  223 (461)
T PF05694_consen  144 MISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHS  223 (461)
T ss_dssp             EEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--E
T ss_pred             EEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCe
Confidence            88752   2345678999999988888777653     4566889998887777641 01             1235789


Q ss_pred             EEEEeecCcee-EEecc
Q 020756          196 IKIFHHNGSLF-FKKMF  211 (321)
Q Consensus       196 v~iw~~~g~~l-~~~~~  211 (321)
                      +.+||+..+.+ .....
T Consensus       224 l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  224 LHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             EEEEETTTTEEEEEEES
T ss_pred             EEEEECCCCcEeeEEec
Confidence            99999966544 33333

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=87.60  E-value=5  Score=37.70  Aligned_cols=67  Identities=9%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             CCEEEEEEccCCCeEEEEeCC-CceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756           94 GSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  167 (321)
Q Consensus        94 g~~l~~~~g~~~~~i~i~d~~-~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~  167 (321)
                      +..+++.  ..++.+..+|.. ++.+-..   ..........  .|..|++++   .+|.|+++|..+++.+..++.+
T Consensus       279 ~~~vyv~--~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---~~G~l~~~d~~tG~~~~~~~~~  349 (377)
T TIGR03300       279 DNRLYVT--DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---FEGYLHWLSREDGSFVARLKTD  349 (377)
T ss_pred             CCEEEEE--CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcC
Confidence            4455543  456778888874 3333222   1111222222  466777776   7899999999999888777643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.10  E-value=12  Score=33.59  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=46.5

Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCC--eeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~--~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      -|.+++++.   ..|.++|.+.++|+++-.+....  -.+..-.+||..|..++      .|++++..|+.
T Consensus        62 vgdfVV~GC---y~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgs------hd~~~yalD~~  123 (354)
T KOG4649|consen   62 VGDFVVLGC---YSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGS------HDGNFYALDPK  123 (354)
T ss_pred             ECCEEEEEE---ccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEec------CCCcEEEeccc
Confidence            588899998   78999999999998777665542  23356788999888888      48888877763

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.01  E-value=12  Score=38.82  Aligned_cols=70  Identities=23%  Similarity=0.365  Sum_probs=46.5

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeC--C---------Cc-ee--EEe----------CCcCeeeEEEcCCC---
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K---------CR-PI--LEL----------GSGPYNTVRWNPKG---  135 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~--~---------~~-~~--~~~----------~~~~~~~~~~sPdG---  135 (321)
                      -.|+.+..||+|++++++ |.  ..+.|..+  +         ++ .+  .++          ....+..+.|+|.+   
T Consensus        85 f~v~~i~~n~~g~~lal~-G~--~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALV-GP--RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCCCCEEEEE-cC--CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            468899999999999997 43  34444433  0         01 01  111          23456789999974   


Q ss_pred             CeEEEEccCCCCCcEEEEECCCC
Q 020756          136 KFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus       136 ~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .+|++-.   .|+.|++||+...
T Consensus       162 ~~l~vLt---sdn~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLT---SDNTLRLYDISDP  181 (717)
T ss_pred             CeEEEEe---cCCEEEEEecCCC
Confidence            6777666   7899999998753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.64  E-value=4.9  Score=33.61  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=18.3

Q ss_pred             eeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756          126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus       126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      .++++||.||++.+.++     ..|+|.|
T Consensus         7 ~~~l~WS~Dg~laV~t~-----~~v~IL~   30 (173)
T PF12657_consen    7 PNALAWSEDGQLAVATG-----ESVHILD   30 (173)
T ss_pred             CcCeeECCCCCEEEEcC-----CeEEEEe
Confidence            36899999998777765     5777773

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.00  E-value=12  Score=36.75  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=45.2

Q ss_pred             CCCeEEEEeCCCceeEEeCCcC--eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCC-----eeeEEEcc
Q 020756          104 MPASATIFNKKCRPILELGSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-----SVTSEWSP  176 (321)
Q Consensus       104 ~~~~i~i~d~~~~~~~~~~~~~--~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~-----~~~~~wSp  176 (321)
                      ....+.++|..+..+..+....  ...+..-++|.+++..+     ..+..+|+ .|+.+.......     -+.+.+-|
T Consensus       126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-----~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~  199 (477)
T PF05935_consen  126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-----NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELP  199 (477)
T ss_dssp             BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-----TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-T
T ss_pred             CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-----CceEEEcC-CCCEEEeeecCCcccccccccEECC
Confidence            3457888899998777663222  22277889999998876     68888888 465555444432     35588899


Q ss_pred             CCCEEEEEE
Q 020756          177 DGRYFMTAT  185 (321)
Q Consensus       177 dG~~l~t~~  185 (321)
                      +|.+|+.+.
T Consensus       200 nGn~L~l~~  208 (477)
T PF05935_consen  200 NGNLLILAS  208 (477)
T ss_dssp             TS-EEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999888

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.79  E-value=34  Score=32.82  Aligned_cols=93  Identities=8%  Similarity=0.112  Sum_probs=55.1

Q ss_pred             CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe-----EEEeeeC----CCeeeEEEccCCCEEEEEEcCCceeec
Q 020756          123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-----QLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQID  193 (321)
Q Consensus       123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-----~i~~~~~----~~~~~~~wSpdG~~l~t~~s~~rl~~d  193 (321)
                      ...+..+.|.++|..++++.    .|.|. +....++     .......    ..++.+.|.+|+..++++.       .
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~----~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~  347 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTR----GGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------S  347 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeC----CceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------C
Confidence            45677899999999888764    35553 3343442     2222221    1477889999988777766       4


Q ss_pred             CcEEEEeecCceeEEe-----ccCceEEEEEecCCCCCC
Q 020756          194 NGIKIFHHNGSLFFKK-----MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       194 ~~v~iw~~~g~~l~~~-----~~~~~~~~~w~P~~~~~~  227 (321)
                      +.+.+..-.|+.-...     ....+|.+.|.++....+
T Consensus       348 G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~  386 (398)
T PLN00033        348 GILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV  386 (398)
T ss_pred             CcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEE
Confidence            4444443344432221     134789998877544333

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=85.79  E-value=34  Score=32.81  Aligned_cols=150  Identities=18%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC---CCCeEEEEECcCCCEEEEEEccC--
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPVHDVQWSYSGSEFAVVYGFM--  104 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~---~~~v~~~~wsP~g~~l~~~~g~~--  104 (321)
                      ..+.|.-||..+-|++....-.+....-.|+.  ||..++....-+.+....   ...-|.+.-.|.| +|.+ .|..  
T Consensus        68 sn~sl~~nPekeELilfGGEf~ngqkT~vYnd--Ly~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~-~l~~-fGGEfa  143 (521)
T KOG1230|consen   68 SNPSLFANPEKEELILFGGEFYNGQKTHVYND--LYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSN-ILWL-FGGEFA  143 (521)
T ss_pred             CCcceeeccCcceeEEecceeecceeEEEeee--eeEEeccccceeEeccCCCcCCCccceeEEeccC-eEEE-eccccC
Confidence            34577788888766655221112111112333  555555444333333221   1122333333444 2222 2321  


Q ss_pred             -C--------CeEEEEeCCCceeEEe--C--C---cCeeeEEEcCCCCeEEEEccCCCC------CcEEEEECCCCe--E
Q 020756          105 -P--------ASATIFNKKCRPILEL--G--S---GPYNTVRWNPKGKFLCLAGFGNLP------GDMAFWDYVDGK--Q  160 (321)
Q Consensus       105 -~--------~~i~i~d~~~~~~~~~--~--~---~~~~~~~~sPdG~~l~~~g~~n~~------g~i~iwD~~~~~--~  160 (321)
                       |        ..+.+||++.+....+  +  .   ....-++|-  -++|+++||....      ++|+++|+++.+  .
T Consensus       144 SPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK--~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~K  221 (521)
T KOG1230|consen  144 SPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK--RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSK  221 (521)
T ss_pred             CcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEee--eeEEEEcceecCCCceEEeeeeEEEeccceeeee
Confidence             1        2466778876655554  1  1   222346664  4789999996532      468888998764  2


Q ss_pred             EEeee-CC---CeeeEEEccCCCEEEEEE
Q 020756          161 LGTTR-AE---CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       161 i~~~~-~~---~~~~~~wSpdG~~l~t~~  185 (321)
                      +..-. .+   .-.++..+|+|..++.++
T Consensus       222 lepsga~PtpRSGcq~~vtpqg~i~vyGG  250 (521)
T KOG1230|consen  222 LEPSGAGPTPRSGCQFSVTPQGGIVVYGG  250 (521)
T ss_pred             ccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence            32211 12   334566778888888776

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=85.38  E-value=0.22  Score=49.38  Aligned_cols=134  Identities=15%  Similarity=0.209  Sum_probs=82.0

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe---CCcCeeeEEEcCCCCeEEEEccCC--CCCcEEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGKFLCLAGFGN--LPGDMAFWD  154 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n--~~g~i~iwD  154 (321)
                      ...+.+++|+-+.++=+...|..+|.|.+-.++..  .-.++   +..++++++|++-..-++.+|+..  .+..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566777776555222222677788888776432  11222   567889999999665555555422  367899999


Q ss_pred             CCCC--eE-----EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EEeccCceEEEEEec
Q 020756          155 YVDG--KQ-----LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKP  221 (321)
Q Consensus       155 ~~~~--~~-----i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P  221 (321)
                      +.++  ..     +..-.......++|-.|.+++++|.+      ...++|+|+...+.  ......-+..+...|
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~------sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp  205 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT------SRSVHIFDLRQSLDSVSSVNTKYVQGITVDP  205 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccc------cchhhhhhhhhhhhhhhhhhhhhcccceecC
Confidence            9876  11     11111124557899999998888885      67899999854333  112222344455556

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.30  E-value=11  Score=36.27  Aligned_cols=47  Identities=13%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEE
Q 020756          125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEW  174 (321)
Q Consensus       125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~w  174 (321)
                      .+.++.-+|+|++.+++.   .-|.|.++|+.++..+...++-.-.++.|
T Consensus       309 ~~~~i~~sP~~~laA~tD---slGRV~LiD~~~~~vvrmWKGYRdAqc~w  355 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTD---SLGRVLLIDVARGIVVRMWKGYRDAQCGW  355 (415)
T ss_pred             eEEEEEECCCCCEEEEEc---CCCcEEEEECCCChhhhhhccCccceEEE
Confidence            456799999999999987   77999999999998888877764444555

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.02  E-value=16  Score=35.42  Aligned_cols=92  Identities=13%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--EE----EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756          122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QL----GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG  195 (321)
Q Consensus       122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--~i----~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~  195 (321)
                      ..+++.++.||||.+.|++--   .+.+|.+.+....+  .+    +.....++..+.|+.. +-+|..+       +.+
T Consensus        65 d~G~I~SIkFSlDnkilAVQR---~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-------~~G  133 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQR---TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-------DQG  133 (657)
T ss_pred             CCCceeEEEeccCcceEEEEe---cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-------cCC
Confidence            578999999999999999976   67899999884321  11    1122236888999987 6677777       678


Q ss_pred             EEEEeecCce----eEEeccCceEEEEEecCCC
Q 020756          196 IKIFHHNGSL----FFKKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       196 v~iw~~~g~~----l~~~~~~~~~~~~w~P~~~  224 (321)
                      +-+|.+.-+.    +.+.+.-.+.=+.|.|+-.
T Consensus       134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETA  166 (657)
T ss_pred             eEEEEEchhhhhhhhhhhcccCccEEEEccccc
Confidence            8888763221    1222333455556666544

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=84.36  E-value=5.8  Score=37.33  Aligned_cols=139  Identities=17%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC----CeEEEEECcCCC------------
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG----PVHDVQWSYSGS------------   95 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~----~v~~~~wsP~g~------------   95 (321)
                      ..+++...|.-|++.         .-|+|   |+.++..|+....+.-.-++    -.+++..+++|.            
T Consensus       118 LGl~f~~~ggdL~Va---------DAYlG---L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~  185 (376)
T KOG1520|consen  118 LGIRFDKKGGDLYVA---------DAYLG---LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDR  185 (376)
T ss_pred             ceEEeccCCCeEEEE---------eccee---eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccch
Confidence            467788777666554         23666   77777666543322211111    122333344332            


Q ss_pred             ---EEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe---eeC-
Q 020756           96 ---EFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT---TRA-  166 (321)
Q Consensus        96 ---~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~---~~~-  166 (321)
                         .+++..+...|++.-||..++....+  +-...|-++.|||+.+++++-+..  ..|.-|-++ +....+   +.. 
T Consensus       186 rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~--~ri~rywi~-g~k~gt~EvFa~~  262 (376)
T KOG1520|consen  186 RDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT--ARIKRYWIK-GPKAGTSEVFAEG  262 (376)
T ss_pred             hheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc--ceeeeeEec-CCccCchhhHhhc
Confidence               23334455567888888877766666  456678899999999999986432  233333232 222211   111 


Q ss_pred             -C-CeeeEEEccCCCEEEEEE
Q 020756          167 -E-CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       167 -~-~~~~~~wSpdG~~l~t~~  185 (321)
                       + ..-.+.-+.+|.|.+.-.
T Consensus       263 LPG~PDNIR~~~~G~fWVal~  283 (376)
T KOG1520|consen  263 LPGYPDNIRRDSTGHFWVALH  283 (376)
T ss_pred             CCCCCcceeECCCCCEEEEEe
Confidence             1 333467778998766554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.35  E-value=6.6  Score=41.93  Aligned_cols=99  Identities=14%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             CCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCC--CceeEEeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           81 KEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK--CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~--~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      +-.-..++.|+|.=- .++++  ..+..|.++.+.  ...+..+. .....+++|+|-|+.++++-   ..|++.-|-. 
T Consensus       154 k~vf~~~~~wnP~vp~n~av~--l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~---nnGt~vQy~P-  227 (1405)
T KOG3630|consen  154 KPVFQLKNVWNPLVPLNSAVD--LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR---NNGTEVQYEP-  227 (1405)
T ss_pred             cccccccccccCCccchhhhh--ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEec---CCCeEEEeec-
Confidence            344566899998533 23332  345667666553  22333442 44567899999999999987   6688887765 


Q ss_pred             CCeEEEeeeCC------CeeeEEEccCCCEEEEEE
Q 020756          157 DGKQLGTTRAE------CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       157 ~~~~i~~~~~~------~~~~~~wSpdG~~l~t~~  185 (321)
                      .++....+..+      .+.+++|--.-.|+++-.
T Consensus       228 ~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  228 SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            34433333332      577899988888888654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=84.05  E-value=24  Score=36.91  Aligned_cols=65  Identities=15%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe-C-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      ...+++=+.+| +||+  |+..|.|+|||.-+..- ..| + ..+|..|..+-||++|+.++    +..|.|+|.
T Consensus       579 ~Fs~~aTt~~G-~iav--gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAV--GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLIDT  646 (794)
T ss_pred             CceEEEecCCc-eEEE--EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEEE
Confidence            44566666666 5666  68899999999744322 223 2 47899999999999998874    456777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.53  E-value=13  Score=36.54  Aligned_cols=58  Identities=10%  Similarity=0.240  Sum_probs=43.2

Q ss_pred             CCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ..+|+.++   ..|.|++||.-.-.-.+.+.+  ..+..+..+.+|.||++.+       .+.+.+-|+.
T Consensus       573 sGyIa~as---~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-------k~yllL~d~~  632 (776)
T COG5167         573 SGYIAAAS---RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-------KNYLLLTDVP  632 (776)
T ss_pred             CceEEEec---CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-------cceEEEEecc
Confidence            34788887   789999999754433333333  2778899999999998877       7888888873

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=83.24  E-value=19  Score=27.87  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=34.4

Q ss_pred             cCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEE
Q 020756           69 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRW  131 (321)
Q Consensus        69 ~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~  131 (321)
                      +....+....+...+.|..+.-...+ .|+.  +...|+|-+|+.....++.-....+.++.+
T Consensus        29 vf~~~e~~~Ei~e~~~v~~L~~~~~~-~F~Y--~l~NGTVGvY~~~~RlWRiKSK~~~~~~~~   88 (111)
T PF14783_consen   29 VFKGDEIVAEITETDKVTSLCSLGGG-RFAY--ALANGTVGVYDRSQRLWRIKSKNQVTSMAF   88 (111)
T ss_pred             EEeCCcEEEEEecccceEEEEEcCCC-EEEE--EecCCEEEEEeCcceeeeeccCCCeEEEEE
Confidence            33333455555556677777766654 4554  466778888887555444444444554433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=83.06  E-value=33  Score=30.42  Aligned_cols=138  Identities=14%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             eEEEEEcCCcC-CC-CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cCC-
Q 020756            6 SVQIYACGKDL-QS-QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRK-   81 (321)
Q Consensus         6 ~v~v~~~~~~~-~~-~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~~-   81 (321)
                      .|.||.+.... .. ..+.... .......+.|.  ++.|++...             ...++++........+. ... 
T Consensus       115 ~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~-------------~~f~~idl~~~~~~~l~~~~~~  178 (275)
T PF00780_consen  115 KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS-------------KGFYLIDLNTGSPSELLDPSDS  178 (275)
T ss_pred             EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC-------------CceEEEecCCCCceEEeCccCC
Confidence            56777776521 01 1222222 24566788888  567766532             12345555432222221 111 


Q ss_pred             ----------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE----EeCCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           82 ----------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        82 ----------~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~----~~~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                                ..++.-+..+. + +|++++.   ....+.|..|.+..    .+...+.....+.|   +|+..+    +
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~~---~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~p---yli~~~----~  246 (275)
T PF00780_consen  179 SSSFKSRNSSSKPLGIFQLSD-N-EFLLCYD---NIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSP---YLIAFS----S  246 (275)
T ss_pred             cchhhhcccCCCceEEEEeCC-c-eEEEEec---ceEEEEcCCCCcCcccEEEcCCchhEEEEECC---EEEEEC----C
Confidence                      22444444443 3 5666543   24455576665443    23344443344443   666654    3


Q ss_pred             CcEEEEECCCCeEEEeeeCCCeee
Q 020756          148 GDMAFWDYVDGKQLGTTRAECSVT  171 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~~~~~~  171 (321)
                      ..|+||++.++++++.+..+.+..
T Consensus       247 ~~iEV~~~~~~~lvQ~i~~~~~~~  270 (275)
T PF00780_consen  247 NSIEVRSLETGELVQTIPLPNIRL  270 (275)
T ss_pred             CEEEEEECcCCcEEEEEECCCEEE
Confidence            569999999999999988765543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.21  E-value=11  Score=27.97  Aligned_cols=40  Identities=18%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756          104 MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus       104 ~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      ..|++.-||..++....+  +-..-|-++.+||+++|+++-.
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            346788899988877666  4567899999999999999863

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=81.80  E-value=55  Score=32.15  Aligned_cols=115  Identities=12%  Similarity=0.015  Sum_probs=54.6

Q ss_pred             EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC--CCCeEEEEECcCCCEEEEEEc-------c-
Q 020756           34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK--EGPVHDVQWSYSGSEFAVVYG-------F-  103 (321)
Q Consensus        34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~--~~~v~~~~wsP~g~~l~~~~g-------~-  103 (321)
                      +...++|..++..              ...++.++..|.......+..  ....|++.+-|+|+.|+++..       . 
T Consensus       153 ~~~l~nG~ll~~~--------------~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~  218 (477)
T PF05935_consen  153 FKQLPNGNLLIGS--------------GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKD  218 (477)
T ss_dssp             EEE-TTS-EEEEE--------------BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-E
T ss_pred             eeEcCCCCEEEec--------------CCceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCC
Confidence            5666777777553              134677777776444444443  234789999999999888751       1 


Q ss_pred             ----CC---------CeEEEEeCCC--ceeEE-------e----------CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756          104 ----MP---------ASATIFNKKC--RPILE-------L----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus       104 ----~~---------~~i~i~d~~~--~~~~~-------~----------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                          .|         ..+..||+..  .+...       +          .-.++|++.|.|....|++++.  ....|.
T Consensus       219 ~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR--~~s~V~  296 (477)
T PF05935_consen  219 VDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR--HQSAVI  296 (477)
T ss_dssp             E---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET--TT-EEE
T ss_pred             ccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC--cceEEE
Confidence                11         1233444311  01111       0          0136899999995555555551  234788


Q ss_pred             EEECCCCeEEEee
Q 020756          152 FWDYVDGKQLGTT  164 (321)
Q Consensus       152 iwD~~~~~~i~~~  164 (321)
                      ..|..+++..-.+
T Consensus       297 ~Id~~t~~i~Wil  309 (477)
T PF05935_consen  297 KIDYRTGKIKWIL  309 (477)
T ss_dssp             EEE-TTS-EEEEE
T ss_pred             EEECCCCcEEEEe
Confidence            8887777655433

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=81.01  E-value=34  Score=29.15  Aligned_cols=84  Identities=17%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             CCeEEEEE--CcCCCEEEEEEccCC-------CeEEEEeCCCceeEEe--CC----cCeeeEEEcCCCCeEEEEccC--C
Q 020756           83 GPVHDVQW--SYSGSEFAVVYGFMP-------ASATIFNKKCRPILEL--GS----GPYNTVRWNPKGKFLCLAGFG--N  145 (321)
Q Consensus        83 ~~v~~~~w--sP~g~~l~~~~g~~~-------~~i~i~d~~~~~~~~~--~~----~~~~~~~~sPdG~~l~~~g~~--n  145 (321)
                      .+-..-.|  |-+|.+-|++.|-.+       |.|+|+|+.......+  +.    ..-..+.|--|..++++.|+.  .
T Consensus        56 ~~~f~t~wk~s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GT  135 (200)
T PF15525_consen   56 EPKFNTKWKNSENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGT  135 (200)
T ss_pred             ccccccccccccCCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccce
Confidence            34455667  456888888766432       5899999876655444  21    112368899999999988753  2


Q ss_pred             --CCCcEEEEECCCCeEEEeeeC
Q 020756          146 --LPGDMAFWDYVDGKQLGTTRA  166 (321)
Q Consensus       146 --~~g~i~iwD~~~~~~i~~~~~  166 (321)
                        ..|.|+++++.+++.......
T Consensus       136 vS~GGnLy~~nl~tg~~~~ly~~  158 (200)
T PF15525_consen  136 VSKGGNLYKYNLNTGNLTELYEW  158 (200)
T ss_pred             EccCCeEEEEEccCCceeEeeec
Confidence              468999999999865554443

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.63  E-value=47  Score=30.52  Aligned_cols=68  Identities=19%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-------CeeeEEEccCCCEEEEEEcCCceeecCcEE
Q 020756          125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIK  197 (321)
Q Consensus       125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~  197 (321)
                      ++|++...++|.+|+++-   .-..|++.|..+++.+=.+.+.       ....++|-.|=+++-...      .++.|.
T Consensus       145 HiNsV~~~~~G~yLiS~R---~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~------~~~~Is  215 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSR---NTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESN------DDGTIS  215 (299)
T ss_pred             EeeeeeecCCccEEEEec---ccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCC------CCCEEE
Confidence            468888889999998876   4568999999899877666554       223366766666654443      266777


Q ss_pred             EEee
Q 020756          198 IFHH  201 (321)
Q Consensus       198 iw~~  201 (321)
                      |+|-
T Consensus       216 lFDN  219 (299)
T PF14269_consen  216 LFDN  219 (299)
T ss_pred             EEcC
Confidence            7775

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.11  E-value=7.5  Score=41.25  Aligned_cols=60  Identities=18%  Similarity=0.279  Sum_probs=42.5

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcC---eeeEEEcCCCCeEEEEc
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGP---YNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~---~~~~~~sPdG~~l~~~g  142 (321)
                      -.++|.+++|+-+|+.++.  |..+|.|.+||... +.++.+  +..+   +-.+.|--++..++++.
T Consensus       129 v~~~Vtsvafn~dg~~l~~--G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLA--GLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSD  194 (1206)
T ss_pred             cCCcceeeEecCCCceecc--ccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEcc
Confidence            3589999999999998887  67788999999965 444444  3333   34455666666566654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=80.10  E-value=7.1  Score=24.76  Aligned_cols=31  Identities=16%  Similarity=0.151  Sum_probs=22.7

Q ss_pred             CCeEEEEECcCCC---EEEEEEccCCCeEEEEeCCC
Q 020756           83 GPVHDVQWSYSGS---EFAVVYGFMPASATIFNKKC  115 (321)
Q Consensus        83 ~~v~~~~wsP~g~---~l~~~~g~~~~~i~i~d~~~  115 (321)
                      |.|.++.|||...   .|+..  ..-+.+.|+|++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~--E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWA--EHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEE--ccCCeEEEEEccc
Confidence            5788999998544   66664  3346999999974

It contains a characteristic DLL sequence motif.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=80.09  E-value=50  Score=30.57  Aligned_cols=116  Identities=17%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             EEEEECcCCCEEEEEEcc----CCCeEEEEeCCCceeEEe-----------------CCcCeeeEEEcCCCCeEEEEccC
Q 020756           86 HDVQWSYSGSEFAVVYGF----MPASATIFNKKCRPILEL-----------------GSGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~----~~~~i~i~d~~~~~~~~~-----------------~~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      -++++.++|..++...+.    .+..|..|+..+..+..+                 .+.....++++|||+.|+++...
T Consensus        88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~  167 (326)
T PF13449_consen   88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES  167 (326)
T ss_pred             hHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence            367887777766664222    015788888776543332                 23345689999999966665432


Q ss_pred             C--CCC-----------cEEEEECCC-Ce----EEEeee-------CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756          145 N--LPG-----------DMAFWDYVD-GK----QLGTTR-------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       145 n--~~g-----------~i~iwD~~~-~~----~i~~~~-------~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      .  .++           .|..||..+ +.    -...+.       ...++.+.+-+|+++|+.-...... ..+.++|+
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~-~~~~~ri~  246 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG-TGNYKRIY  246 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC-ccceEEEE
Confidence            2  121           244566654 21    222232       2467889999999988876642111 24566776


Q ss_pred             eec
Q 020756          200 HHN  202 (321)
Q Consensus       200 ~~~  202 (321)
                      .++
T Consensus       247 ~v~  249 (326)
T PF13449_consen  247 RVD  249 (326)
T ss_pred             EEE
Confidence            653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.93
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.91
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.89
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.89
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.89
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.89
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.88
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.88
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.88
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.88
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.87
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.87
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.87
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.86
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.86
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.86
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.86
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.86
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.86
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.86
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.86
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.85
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.85
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.85
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.85
2pm7_B	297	Protein transport protein SEC13, protein transport	99.85
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.85
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.85
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.85
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.85
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.85
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.84
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.84
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.84
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.84
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.84
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.84
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.84
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.84
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.84
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.83
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.83
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.83
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.83
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.83
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.83
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.83
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.82
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.82
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.82
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.82
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.82
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.81
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.81
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.81
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.81
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.81
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.81
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.81
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.81
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.8
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.8
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.8
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.8
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.8
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.79
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.79
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.79
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.79
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.79
2pm7_B	297	Protein transport protein SEC13, protein transport	99.79
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.78
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.78
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.78
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.78
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.78
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.78
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.77
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.77
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.77
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.77
3jro_A	753	Fusion protein of protein transport protein SEC13	99.76
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.76
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.76
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.76
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.76
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.76
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.76
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.76
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.76
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.75
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.75
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.75
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.75
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.75
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.74
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.74
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.74
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.74
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.73
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.73
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.72
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.72
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.72
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.72
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.71
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.71
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.71
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.71
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.71
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.69
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.68
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.68
3jro_A	753	Fusion protein of protein transport protein SEC13	99.67
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.67
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.67
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.65
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.65
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.64
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.64
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.63
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.63
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.63
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.63
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.62
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.62
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.61
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.61
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.61
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.6
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.6
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.59
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.59
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.59
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.58
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.58
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.56
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.55
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.54
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.52
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.51
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.51
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.5
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.48
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.47
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.44
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.44
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.42
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.41
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.4
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.38
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.27
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.27
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.26
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.24
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.16
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.15
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.12
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.08
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.06
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.04
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.01
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.97
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.95
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.95
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.92
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.92
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.89
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.88
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.84
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.77
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.75
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.73
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.71
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.66
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.64
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.49
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.46
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.45
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.28
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.25
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.23
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.22
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.14
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.1
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.06
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.97
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.95
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.9
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.88
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.88
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.64
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.61
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.54
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.52
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.46
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.44
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.4
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.26
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.13
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.12
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.06
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.81
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.76
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.63
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.51
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.51
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.42
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.4
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.34
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.31
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.17
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.02
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.0
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.95
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.84
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.54
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.41
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.4
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.4
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.97
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.82
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.82
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.66
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.68
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.39
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.16
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.89
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.56
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	91.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	91.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	91.62
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.88
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	90.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	89.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	88.7
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	87.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	87.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	85.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	84.42
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	81.6
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.31
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.7
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	80.57
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	80.48
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	80.36

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.93  E-value=6.4e-24  Score=194.74  Aligned_cols=202  Identities=14%  Similarity=0.249  Sum_probs=163.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+............+.|+|+|++|++...          .|  .+.+++............+
T Consensus        99 s~D~~i~lWd~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~----------dg--~v~i~~~~~~~~~~~~~~~  163 (321)
T 3ow8_A           99 SLDAHIRLWDLEN---GKQIKSIDAGPVDAWTLAFSPDSQYLATGTH----------VG--KVNIFGVESGKKEYSLDTR  163 (321)
T ss_dssp             ETTSEEEEEETTT---TEEEEEEECCTTCCCCEEECTTSSEEEEECT----------TS--EEEEEETTTCSEEEEEECS
T ss_pred             eCCCcEEEEECCC---CCEEEEEeCCCccEEEEEECCCCCEEEEEcC----------CC--cEEEEEcCCCceeEEecCC
Confidence            3578999999998   7778777777778889999999999877421          12  2455565544333333346


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|.+++|+|+|++|++  +..++.|.+||++. +.+..+  |...+.++.|+|+|++|++++   .|+.|++||++++
T Consensus       164 ~~~v~~~~~spdg~~las--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---~dg~i~iwd~~~~  238 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLAS--GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS---DDGYIKIYDVQHA  238 (321)
T ss_dssp             SSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC---TTSCEEEEETTTC
T ss_pred             CceEEEEEECCCCCEEEE--EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc---CCCeEEEEECCCc
Confidence            778999999999999988  46789999999964 455666  678899999999999999998   8999999999999


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +++..+..|  .+..++|+|||++|++++.      |+.++|||+. ++++  +..|...++.+.|+|+...+++.
T Consensus       239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~  308 (321)
T 3ow8_A          239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSS------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV  308 (321)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ceeEEEcCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            988888876  6889999999999999995      9999999995 4555  34577899999999998877765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.9e-22  Score=187.19  Aligned_cols=200  Identities=12%  Similarity=0.179  Sum_probs=151.3

Q ss_pred             CCceEEEEEcCCcCCCCceeeeec----ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            3 SPASVQIYACGKDLQSQPLARRSF----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~----f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      ..+.|+||++.+   ++.+....+    +...+..+.|+|+|++|+... .  |       |  .+.++++.........
T Consensus       101 ~dg~v~lWd~~~---~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-~--d-------~--~i~iwd~~~~~~~~~~  165 (344)
T 4gqb_B          101 DSGAVELWELDE---NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-K--D-------I--CIKVWDLAQQVVLSSY  165 (344)
T ss_dssp             TTSEEEEEEECT---TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-T--T-------S--CEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeccC---CCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-C--C-------C--eEEEEECCCCcEEEEE
Confidence            468999999998   565544332    356778999999999987642 1  1       2  2566666655333344


Q ss_pred             cCCCCCeEEEEECcCCCE-EEEEEccCCCeEEEEeCCC-ceeEEe----CCcCeeeEEEcCCC-CeEEEEccCCCCCcEE
Q 020756           79 LRKEGPVHDVQWSYSGSE-FAVVYGFMPASATIFNKKC-RPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMA  151 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~-l~~~~g~~~~~i~i~d~~~-~~~~~~----~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~  151 (321)
                      ..|.+.|.+++|+|++.. |++  +..|+.|+|||++. +.+..+    +...+.++.|+|++ ++|++++   .|+.|+
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s--~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~---~dg~v~  240 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLS--CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD---ENGTVS  240 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEE--EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE---TTSEEE
T ss_pred             cCcCCceEEEEecCCCCCceee--eccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec---cCCcEE
Confidence            458999999999999975 455  46789999999964 455554    34568899999965 5677777   889999


Q ss_pred             EEECCCCeEEEeeeCC--CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEeecCcee--EEeccCceEEEEEecCCCCC
Q 020756          152 FWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~--~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~~~~  226 (321)
                      |||+++++++..+..|  .++.++||||| ++|++++.      |+.|+|||+....+  ...|...|+.++|+|+...+
T Consensus       241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~------D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE------DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeE
Confidence            9999999999888877  78999999998 57888884      99999999965544  45678899999999999887


Q ss_pred             CC
Q 020756          227 FG  228 (321)
Q Consensus       227 ~~  228 (321)
                      +.
T Consensus       315 la  316 (344)
T 4gqb_B          315 LT  316 (344)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.89  E-value=5e-21  Score=176.30  Aligned_cols=214  Identities=10%  Similarity=0.090  Sum_probs=162.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEe------cccC--------------C-------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS------DVDK--------------T-------   54 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~------d~d~--------------t-------   54 (321)
                      +.++.|+||++.+   ++.+............+.|+|+|++|+.....      +...              .       
T Consensus        74 s~Dg~v~iWd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~  150 (340)
T 1got_B           74 SQDGKLIIWDSYT---TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR  150 (340)
T ss_dssp             ETTTEEEEEETTT---CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEE
T ss_pred             eCCCcEEEEECCC---CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEE
Confidence            4678999999988   67777777777788899999999988764210      0000              0       


Q ss_pred             ----Ccee--ecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcC
Q 020756           55 ----NQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGP  125 (321)
Q Consensus        55 ----~~s~--~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~  125 (321)
                          +...  .+...+.+++............|.+.|.+++|+|+++.|++  +..|+.|++||++. ..+..+  |...
T Consensus       151 ~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--g~~d~~v~~wd~~~~~~~~~~~~h~~~  228 (340)
T 1got_B          151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREGMCRQTFTGHESD  228 (340)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred             ECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE--EeCCCcEEEEECCCCeeEEEEcCCcCC
Confidence                0000  01123444454443222223358899999999999998887  46789999999954 455566  7889


Q ss_pred             eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ++++.|+|+|++|++++   .|+.|++||+++++.+..+...    .++.++|+|+|++|++++.      |+.++|||+
T Consensus       229 v~~v~~~p~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------d~~i~vwd~  299 (340)
T 1got_B          229 INAICFFPNGNAFATGS---DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDA  299 (340)
T ss_dssp             EEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEET
T ss_pred             EEEEEEcCCCCEEEEEc---CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC------CCeEEEEEc
Confidence            99999999999999999   8999999999999887776543    5788999999999999995      999999998


Q ss_pred             c-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          202 N-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       202 ~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      . +..+  +..|...+..+.|+|++..+++.
T Consensus       300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             ccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence            4 4544  55688899999999998877764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.89  E-value=2.6e-21  Score=189.06  Aligned_cols=198  Identities=16%  Similarity=0.272  Sum_probs=162.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||+. +   ++.+............+.|+|+|++|+....            ...+.+++..+.. ......|.
T Consensus       364 ~dg~v~~~~~-~---~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~------------d~~v~~~~~~~~~-~~~~~~~~  426 (577)
T 2ymu_A          364 DDKTVKLWNR-N---GQLLQTLTGHSSSVRGVAFSPDGQTIASASD------------DKTVKLWNRNGQL-LQTLTGHS  426 (577)
T ss_dssp             TTSEEEEEET-T---CCEEEEEECCSSCEEEEEECTTSSCEEEEET------------TSEEEEECTTCCE-EEEEECCS
T ss_pred             CCCEEEEEcC-C---CCEEEEecCCCCCeEEEEECCCCCEEEEEeC------------CCEEEEEeCCCCE-EEEecCCC
Confidence            4678999995 3   4667777767778889999999999876421            1125555655542 22334688


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..|.+++|+||++.|+++  ..++.+.+||..++.+..+  |...+.+++|+|+|++|++++   .++.|++||. ++++
T Consensus       427 ~~v~~~~~s~d~~~l~~~--~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~---~d~~i~iw~~-~~~~  500 (577)
T 2ymu_A          427 SSVWGVAFSPDDQTIASA--SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS---DDKTVKLWNR-NGQL  500 (577)
T ss_dssp             SCEEEEEECTTSSEEEEE--ETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEE---TTSEEEEEET-TSCE
T ss_pred             CCeEEEEECCCCCEEEEE--cCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCCEEEEEcC-CCCE
Confidence            999999999999999885  5688999999988877776  788999999999999999999   8999999996 6778


Q ss_pred             EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756          161 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       161 i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +..+..|  .++.++|||||++|++++.      |+.|+|||++|+++  +..|...|..+.|+|++..+++.
T Consensus       501 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~  567 (577)
T 2ymu_A          501 LQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA  567 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEET------TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEEeCCCCCEEEEEEcCCCCEEEEEEC------cCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            8888876  7899999999999999994      99999999999887  55688899999999999888764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.89  E-value=6.9e-21  Score=180.16  Aligned_cols=203  Identities=10%  Similarity=0.120  Sum_probs=162.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|+|+|++|+... .  |       |.  +.+++..+.........|
T Consensus       127 s~Dg~i~vwd~~~---~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs-~--D-------~~--i~iwd~~~~~~~~~~~~h  191 (410)
T 1vyh_C          127 SEDATIKVWDYET---GDFERTLKGHTDSVQDISFDHSGKLLASCS-A--D-------MT--IKLWDFQGFECIRTMHGH  191 (410)
T ss_dssp             ESSSCEEEEETTT---CCCCEEECCCSSCEEEEEECTTSSEEEEEE-T--T-------SC--CCEEETTSSCEEECCCCC
T ss_pred             eCCCeEEEEECCC---CcEEEEEeccCCcEEEEEEcCCCCEEEEEe-C--C-------Ce--EEEEeCCCCceeEEEcCC
Confidence            3578999999998   677777777778888999999999776642 1  1       22  344455443222222358


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|.+++|+|+|+.|++.  ..|+.|.+||+.. ..+..+  |...+..+.|+|+|++|++++   .|+.|++||+.++
T Consensus       192 ~~~V~~v~~~p~~~~l~s~--s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s---~D~~v~vwd~~~~  266 (410)
T 1vyh_C          192 DHNVSSVSIMPNGDHIVSA--SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS---NDQTVRVWVVATK  266 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEE--ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTC
T ss_pred             CCCEEEEEEeCCCCEEEEE--eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc---CCCeEEEEECCCC
Confidence            8999999999999998884  6789999999954 455555  778899999999999999999   8999999999999


Q ss_pred             eEEEeeeCC--CeeeEEEccC--------------------CCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCc
Q 020756          159 KQLGTTRAE--CSVTSEWSPD--------------------GRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDK  213 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpd--------------------G~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~  213 (321)
                      +++..+..|  .+.+++|+|+                    |.+|++++.      |+.++|||+. |..+  +..|...
T Consensus       267 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~------D~~i~iwd~~~~~~~~~~~~h~~~  340 (410)
T 1vyh_C          267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR------DKTIKMWDVSTGMCLMTLVGHDNW  340 (410)
T ss_dssp             CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET------TSEEEEEETTTTEEEEEEECCSSC
T ss_pred             ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC------CCeEEEEECCCCceEEEEECCCCc
Confidence            888888776  6889999997                    778999994      9999999985 5554  4567788


Q ss_pred             eEEEEEecCCCCCCCCc
Q 020756          214 LFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       214 ~~~~~w~P~~~~~~~~~  230 (321)
                      +..+.|+|++..+++..
T Consensus       341 v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          341 VRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             EEEEEECSSSSCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEe
Confidence            99999999998888753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.89  E-value=8.8e-21  Score=173.79  Aligned_cols=174  Identities=11%  Similarity=0.091  Sum_probs=141.4

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++..   ++..............+.|+|+|++|+....   |       |  .+.+++............|
T Consensus       141 ~~dg~v~i~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~lasg~~---d-------g--~i~iwd~~~~~~~~~~~~h  205 (321)
T 3ow8_A          141 THVGKVNIFGVES---GKKEYSLDTRGKFILSIAYSPDGKYLASGAI---D-------G--IINIFDIATGKLLHTLEGH  205 (321)
T ss_dssp             CTTSEEEEEETTT---CSEEEEEECSSSCEEEEEECTTSSEEEEEET---T-------S--CEEEEETTTTEEEEEECCC
T ss_pred             cCCCcEEEEEcCC---CceeEEecCCCceEEEEEECCCCCEEEEEcC---C-------C--eEEEEECCCCcEEEEEccc
Confidence            3468899999998   6666666655667789999999999877521   1       2  2556666554333333357


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ..+|.+++|+|+|++|++  +..|+.|+|||++. ..+..+  |...+.+++|+|+|++|++++   .|+.|+|||+.++
T Consensus       206 ~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s---~D~~v~iwd~~~~  280 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS---SDKSVKVWDVGTR  280 (321)
T ss_dssp             SSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTT
T ss_pred             CCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe---CCCcEEEEeCCCC
Confidence            889999999999999888  47789999999964 455555  778899999999999999999   8999999999999


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +++..+..|  .+..++|+|||++|++++.      |+.|+|||+
T Consensus       281 ~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~------d~~i~vwd~  319 (321)
T 3ow8_A          281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGD------DQEIHIYDC  319 (321)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEET------TCCEEEEEC
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEEEeC------CCeEEEEeC
Confidence            999998776  7889999999999999994      999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.88  E-value=1.5e-20  Score=170.39  Aligned_cols=198  Identities=12%  Similarity=0.150  Sum_probs=155.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~   80 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|+|++++|+... .|         |.  +.+++.... ........
T Consensus        74 s~d~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D---------~~--v~lWd~~~~~~~~~~~~~  138 (304)
T 2ynn_A           74 SDDFRIRVFNYNT---GEKVVDFEAHPDYIRSIAVHPTKPYVLSGS-DD---------LT--VKLWNWENNWALEQTFEG  138 (304)
T ss_dssp             ETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEEEE-TT---------SC--EEEEEGGGTTEEEEEECC
T ss_pred             CCCCEEEEEECCC---CcEEEEEeCCCCcEEEEEEcCCCCEEEEEC-CC---------Ce--EEEEECCCCcchhhhhcc
Confidence            3568999999998   778877777788889999999999887542 11         22  445554433 22233346


Q ss_pred             CCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC-ceeEEe---CCcCeeeEEEcC--CCCeEEEEccCCCCCcEEEE
Q 020756           81 KEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNP--KGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        81 ~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~---~~~~~~~~~~sP--dG~~l~~~g~~n~~g~i~iw  153 (321)
                      |...|.+++|+| ++..|++  +..|+.|++||+.. .....+   +...++.+.|+|  ++++|++++   .|+.|++|
T Consensus       139 h~~~v~~v~~~p~~~~~l~s--gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~D~~i~iW  213 (304)
T 2ynn_A          139 HEHFVMCVAFNPKDPSTFAS--GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS---DDLTIKIW  213 (304)
T ss_dssp             CCSCEEEEEECTTCTTEEEE--EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE---TTSEEEEE
T ss_pred             cCCcEEEEEECCCCCCEEEE--EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc---CCCeEEEE
Confidence            889999999999 5677877  47789999999853 333433   457789999987  788999999   89999999


Q ss_pred             ECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCC
Q 020756          154 DYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       154 D~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~  225 (321)
                      |+++++++..+..|  .+..+.|+|++.+|++++.      |+.|+|||.. ++++  ...+...++.++|+|+...
T Consensus       214 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred             eCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence            99999999999887  7888999999999999994      9999999995 4554  3345678999999998754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.88  E-value=7.9e-21  Score=179.76  Aligned_cols=202  Identities=9%  Similarity=0.138  Sum_probs=162.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |..+.|+||++..   .+.+.....+...+..+.|+|+|++|+... .           ...+.++++...........|
T Consensus       169 s~D~~i~iwd~~~---~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s-~-----------D~~i~~wd~~~~~~~~~~~~h  233 (410)
T 1vyh_C          169 SADMTIKLWDFQG---FECIRTMHGHDHNVSSVSIMPNGDHIVSAS-R-----------DKTIKMWEVQTGYCVKTFTGH  233 (410)
T ss_dssp             ETTSCCCEEETTS---SCEEECCCCCSSCEEEEEECSSSSEEEEEE-T-----------TSEEEEEETTTCCEEEEEECC
T ss_pred             eCCCeEEEEeCCC---CceeEEEcCCCCCEEEEEEeCCCCEEEEEe-C-----------CCeEEEEECCCCcEEEEEeCC
Confidence            3578899999988   677777777778889999999999886642 1           123566666544333333358


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCC--------------------CCeE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPK--------------------GKFL  138 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPd--------------------G~~l  138 (321)
                      ...|.++.|+|+|..|+++  ..|+.|++||+... ....+  |...+.++.|+|+                    |.+|
T Consensus       234 ~~~v~~~~~~~~g~~l~s~--s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  311 (410)
T 1vyh_C          234 REWVRMVRPNQDGTLIASC--SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL  311 (410)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred             CccEEEEEECCCCCEEEEE--cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence            8899999999999999885  66899999999643 45555  7888999999997                    6789


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCc
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDK  213 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~  213 (321)
                      ++++   .|+.|++||+.+++++..+..|  .+..+.|+|+|++|++++.      |+.|+|||+. ++++  +..|...
T Consensus       312 ~sgs---~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~~i~vwd~~~~~~~~~~~~h~~~  382 (410)
T 1vyh_C          312 LSGS---RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHF  382 (410)
T ss_dssp             EEEE---TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSC
T ss_pred             EEEe---CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCc
Confidence            9998   8999999999999999988876  6889999999999999995      9999999995 4444  5567789


Q ss_pred             eEEEEEecCCCCCCCC
Q 020756          214 LFQAEWKPVSPDKFGD  229 (321)
Q Consensus       214 ~~~~~w~P~~~~~~~~  229 (321)
                      |..+.|+|+.+.+++.
T Consensus       383 v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          383 VTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             EEEEEECSSSSCEEEE
T ss_pred             EEEEEEcCCCCEEEEE
Confidence            9999999998887764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=6.6e-21  Score=177.81  Aligned_cols=174  Identities=14%  Similarity=0.086  Sum_probs=133.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee--eeecC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLR   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~--~v~l~   80 (321)
                      .++.|+||++.+   ++++.... ...++..+.|+|+|++|+...             ...+..++.......  .....
T Consensus       155 ~d~~i~iwd~~~---~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-------------~~~~~~~~~~~~~~~~~~~~~~  217 (365)
T 4h5i_A          155 VPAIMRIIDPSD---LTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-------------GSSLEVISTVTGSCIARKTDFD  217 (365)
T ss_dssp             SSCEEEEEETTT---TEEEEEEE-CSSCCCEEEECTTSSEEEEEC-------------SSCEEEEETTTCCEEEEECCCC
T ss_pred             CCCEEEEeECCC---CcEEEEeC-CCCceEEEEEccCCceEEecc-------------ceeEEEEEeccCcceeeeecCC
Confidence            578999999998   67776654 456788999999999987752             112445554333222  22234


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeCCCce-----eEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRP-----ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~~~~~-----~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      |...|.+++|+|+|+.++++......  .+.+||+....     ...+  +...+.+++|||||++|++++   .|+.|+
T Consensus       218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs---~D~~V~  294 (365)
T 4h5i_A          218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS---NDNSIA  294 (365)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE---TTSCEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc---CCCEEE
Confidence            77889999999999999987533222  57778874332     2233  677899999999999999999   899999


Q ss_pred             EEECCCCeEEEee-eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          152 FWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       152 iwD~~~~~~i~~~-~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      |||+++++++..+ .+|  .|++++|||||++|++++.      |++|+||++.
T Consensus       295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~------D~tvrvw~ip  342 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA------ANTIHIIKLP  342 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET------TSEEEEEECC
T ss_pred             EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC------CCeEEEEEcC
Confidence            9999999999875 555  7999999999999999994      9999999984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.88  E-value=1.5e-20  Score=170.50  Aligned_cols=202  Identities=11%  Similarity=0.088  Sum_probs=157.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   +..+............+.|+|+|++|+...            ....+.+++............|
T Consensus        32 ~~dg~v~lWd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s------------~d~~i~vwd~~~~~~~~~~~~h   96 (304)
T 2ynn_A           32 LYSGRVELWNYET---QVEVRSIQVTETPVRAGKFIARKNWIIVGS------------DDFRIRVFNYNTGEKVVDFEAH   96 (304)
T ss_dssp             ETTSEEEEEETTT---TEEEEEEECCSSCEEEEEEEGGGTEEEEEE------------TTSEEEEEETTTCCEEEEEECC
T ss_pred             cCCCcEEEEECCC---CceeEEeeccCCcEEEEEEeCCCCEEEEEC------------CCCEEEEEECCCCcEEEEEeCC
Confidence            3578999999998   777877777777888999999999987752            1123556666554333333358


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .+.|.+++|+|++.+|++  +..|+.|++||++..  ....+  |...+.++.|+| ++.+|++++   .|+.|++||+.
T Consensus        97 ~~~v~~~~~~~~~~~l~s--gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs---~D~~v~iwd~~  171 (304)
T 2ynn_A           97 PDYIRSIAVHPTKPYVLS--GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC---LDRTVKVWSLG  171 (304)
T ss_dssp             SSCEEEEEECSSSSEEEE--EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE---TTSEEEEEETT
T ss_pred             CCcEEEEEEcCCCCEEEE--ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe---CCCeEEEEECC
Confidence            899999999999999887  467899999999643  33344  788899999999 678999999   99999999998


Q ss_pred             CCeEEEeeeC---CCeeeEEEcc--CCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCC
Q 020756          157 DGKQLGTTRA---ECSVTSEWSP--DGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       157 ~~~~i~~~~~---~~~~~~~wSp--dG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      +......+..   ..+..+.|+|  ++.+|++++.      |+.|+|||+. ++++  +..|...+..+.|+|+.+.+++
T Consensus       172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET------TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC------CCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE
Confidence            7754444432   2677788886  7889999995      9999999995 4444  5568889999999999887776


Q ss_pred             C
Q 020756          229 D  229 (321)
Q Consensus       229 ~  229 (321)
                      .
T Consensus       246 ~  246 (304)
T 2ynn_A          246 G  246 (304)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.88  E-value=1.6e-20  Score=172.96  Aligned_cols=201  Identities=12%  Similarity=0.175  Sum_probs=152.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee--c
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--L   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~--l   79 (321)
                      +..+.|+||++.+   ++.+.....+......+.|+|+|++|+... .  |       +  .+.+++..+.......  .
T Consensus        95 s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~-~--d-------~--~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R           95 SWDKTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSPDNRQILSAG-A--E-------R--EIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             ETTSEEEEEETTS---SCEEEEEECCCSCEEEEEECSSTTEEEEEE-T--T-------S--CEEEEESSSCEEEECCTTT
T ss_pred             cCCCcEEEEECCC---CcEEEEEcCCCCcEEEEEECCCCCEEEEEc-C--C-------C--EEEEEeccCCceeeeeccc
Confidence            3578999999998   677777777788889999999999887642 1  1       2  2455555543211111  1


Q ss_pred             CCCCCeEEEEECcCC----------CEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           80 RKEGPVHDVQWSYSG----------SEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g----------~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                      .|...|.+++|+|++          .+|++  +..++.|.+||........+  |...+++++|+|+|++|++++   .|
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs---~d  234 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFAS--VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG---KD  234 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEE--EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TT
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEE--EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEc---CC
Confidence            477889999999987          56666  46789999999877666665  788999999999999999999   99


Q ss_pred             CcEEEEECCC-CeEEEeee-CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeE--E-------------e
Q 020756          148 GDMAFWDYVD-GKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF--K-------------K  209 (321)
Q Consensus       148 g~i~iwD~~~-~~~i~~~~-~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~--~-------------~  209 (321)
                      +.|++||+.+ ......+. .+.+..++|+|++++++++.       |+.++||++... .+.  .             .
T Consensus       235 g~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          235 KKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-------DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             CEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-------SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred             CeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-------CCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence            9999999953 33444443 34789999999999887666       899999998532 211  1             3


Q ss_pred             ccCceEEEEEecCCCCCCCC
Q 020756          210 MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       210 ~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +...+..++|+|++..++..
T Consensus       308 ~~~~v~~~~~sp~g~~l~sg  327 (343)
T 2xzm_R          308 KNPQCTSLAWNALGKKLFAG  327 (343)
T ss_dssp             SCCCEEEEEECSSSCCEEEE
T ss_pred             CCCceEEEEECCCCCeEEEe
Confidence            45678999999999888765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.88  E-value=3.4e-20  Score=169.39  Aligned_cols=205  Identities=14%  Similarity=0.085  Sum_probs=159.5

Q ss_pred             CCCceEEEEEcCCcCC--CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            2 GSPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~--~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      |.++.|+||++.....  +.++.....+...+..+.|+|+|++|+...            ....+.+++...........
T Consensus        37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s------------~D~~v~~wd~~~~~~~~~~~  104 (319)
T 3frx_A           37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS------------WDKTLRLWDVATGETYQRFV  104 (319)
T ss_dssp             ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE------------TTSEEEEEETTTTEEEEEEE
T ss_pred             cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe------------CCCEEEEEECCCCCeeEEEc
Confidence            4578999999975210  123444455667778899999999987652            11235666665553333334


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCC------CCeEEEEccCCCCCcEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPK------GKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPd------G~~l~~~g~~n~~g~i~  151 (321)
                      .|.+.|.+++|+|++..|++  +..|+.|++||+++..+..+  |...+.++.|+|.      +.+|++++   .|+.|+
T Consensus       105 ~h~~~v~~~~~~~~~~~l~s--~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~---~d~~i~  179 (319)
T 3frx_A          105 GHKSDVMSVDIDKKASMIIS--GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG---NDKMVK  179 (319)
T ss_dssp             CCSSCEEEEEECTTSCEEEE--EETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEE---TTSCEE
T ss_pred             cCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe---CCCEEE
Confidence            68999999999999999888  47789999999998877777  6788999999995      44888888   899999


Q ss_pred             EEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEE-eccCceEEEEEecCCCCCC
Q 020756          152 FWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFK-KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~-~~~~~~~~~~w~P~~~~~~  227 (321)
                      +||+++++....+..|  .+..++|+|||++|++++.      |+.|+|||+.. +.+.. .....+..++|+|+...++
T Consensus       180 ~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la  253 (319)
T 3frx_A          180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK------DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA  253 (319)
T ss_dssp             EEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET------TCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred             EEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence            9999999888888776  7889999999999999994      99999999954 44433 3456899999999987666


Q ss_pred             CC
Q 020756          228 GD  229 (321)
Q Consensus       228 ~~  229 (321)
                      ..
T Consensus       254 ~~  255 (319)
T 3frx_A          254 AA  255 (319)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.87  E-value=1.4e-20  Score=173.81  Aligned_cols=203  Identities=14%  Similarity=0.242  Sum_probs=149.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeee---cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~---~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      |..+.|+||++..   +..+....   -+...+..+.|+|+|++|+...   .|       +...||.+.... ......
T Consensus        35 ~~D~~i~iw~~~~---~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s---~D-------~~v~iw~~~~~~-~~~~~~  100 (345)
T 3fm0_A           35 GGDRRIRIWGTEG---DSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS---FD-------ATTCIWKKNQDD-FECVTT  100 (345)
T ss_dssp             ETTSCEEEEEEET---TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE---TT-------SCEEEEEECCC--EEEEEE
T ss_pred             cCCCeEEEEEcCC---CcceeeeeeccccCCcEEEEEECCCCCEEEEEE---CC-------CcEEEEEccCCC-eEEEEE
Confidence            4578999999987   44333322   2456778899999999887652   11       333344332221 122222


Q ss_pred             -cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           79 -LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        79 -l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                       ..|.+.|.+++|+|+|++|+++  ..|+.|.+||+...    .+..+  |...+.++.|+|+|++|++++   .|+.|+
T Consensus       101 ~~~h~~~v~~v~~sp~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s---~d~~i~  175 (345)
T 3fm0_A          101 LEGHENEVKSVAWAPSGNLLATC--SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS---YDDTVK  175 (345)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE---TTSCEE
T ss_pred             ccCCCCCceEEEEeCCCCEEEEE--ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe---CCCcEE
Confidence             3588999999999999999985  67899999998543    23334  678899999999999999999   899999


Q ss_pred             EEECCCCe--EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--C--------------ceeEE---
Q 020756          152 FWDYVDGK--QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--G--------------SLFFK---  208 (321)
Q Consensus       152 iwD~~~~~--~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g--------------~~l~~---  208 (321)
                      +||..+++  ++..+..|  .+..++|+|||++|++++.      |+.|+||+..  +              ..+..   
T Consensus       176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~------D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T 3fm0_A          176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD------DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG  249 (345)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred             EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC------CCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence            99998875  44566665  7889999999999999995      9999999962  1              11111   


Q ss_pred             eccCceEEEEEecCCCCCCCC
Q 020756          209 KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       209 ~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .|...++++.|+|+...+++.
T Consensus       250 ~h~~~v~~v~~~~~~~~l~s~  270 (345)
T 3fm0_A          250 FHSRTIYDIAWCQLTGALATA  270 (345)
T ss_dssp             SCSSCEEEEEECTTTCCEEEE
T ss_pred             CCCCcEEEEEEecCCCEEEEE
Confidence            155689999999998877765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.87  E-value=8.7e-20  Score=166.63  Aligned_cols=200  Identities=15%  Similarity=0.217  Sum_probs=157.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|+|+|+.|+... .  |       +  .+.+++..+. .......|
T Consensus        84 s~D~~v~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~--D-------~--~i~vwd~~~~-~~~~~~~h  147 (319)
T 3frx_A           84 SWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMIISGS-R--D-------K--TIKVWTIKGQ-CLATLLGH  147 (319)
T ss_dssp             ETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSCEEEEEE-T--T-------S--CEEEEETTSC-EEEEECCC
T ss_pred             eCCCEEEEEECCC---CCeeEEEccCCCcEEEEEEcCCCCEEEEEe-C--C-------C--eEEEEECCCC-eEEEEecc
Confidence            3578999999998   777777777788899999999999887642 1  1       2  2455566554 23333468


Q ss_pred             CCCeEEEEECcCCC------EEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           82 EGPVHDVQWSYSGS------EFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        82 ~~~v~~~~wsP~g~------~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      .+.|.++.|+|.+.      .|++  +..++.|++||++.. ....+  |...++++.|+|+|++|++++   .|+.|+|
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~i~i  222 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIIS--AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG---KDGEIML  222 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEE--EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE---TTCEEEE
T ss_pred             CCcEEEEEEccCCCCCCCccEEEE--EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe---CCCeEEE
Confidence            89999999999543      5555  567899999999654 44455  788999999999999999999   8999999


Q ss_pred             EECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-e----------ccCceEEEEEe
Q 020756          153 WDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-K----------MFDKLFQAEWK  220 (321)
Q Consensus       153 wD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~----------~~~~~~~~~w~  220 (321)
                      ||+.+++++..+..+ .+..++|+|||.+|++++       +++++||+++...+.. .          +...+..++|+
T Consensus       223 wd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  295 (319)
T 3frx_A          223 WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS  295 (319)
T ss_dssp             EETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred             EECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence            999999998888776 788999999999999888       7889999997654421 1          23468899999


Q ss_pred             cCCCCCCCC
Q 020756          221 PVSPDKFGD  229 (321)
Q Consensus       221 P~~~~~~~~  229 (321)
                      |++..+++.
T Consensus       296 pdg~~l~sg  304 (319)
T 3frx_A          296 ADGQTLFAG  304 (319)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCCEEEEe
Confidence            999888765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.87  E-value=1.6e-19  Score=167.50  Aligned_cols=205  Identities=12%  Similarity=0.177  Sum_probs=156.6

Q ss_pred             CCCceEEEEEcCCcCC---CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            2 GSPASVQIYACGKDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~---~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      |..+.|+||++.....   .........+......+.|+|++..|+...            ....+.++++.........
T Consensus       125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s------------~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS------------GDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             STTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE------------TTSEEEEEETTTCCEEEEE
T ss_pred             eCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCCeEEEEE
Confidence            4578899999875210   122334444566778899999999887642            1223566666554333333


Q ss_pred             cCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           79 LRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        79 l~~~~~v~~~~wsP--~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ..|...|.+++|+|  +|+.|++  +..|+.+.+||++. ..+..+  |...++++.|+|+|++|++++   .|+.|++|
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~s--gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~v~lw  267 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVS--GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS---DDATCRLY  267 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEE--EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEE
Confidence            35888999999988  4677777  46789999999964 455555  788999999999999999999   89999999


Q ss_pred             ECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCC
Q 020756          154 DYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       154 D~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~  226 (321)
                      |+++++.+..+..+    .++.++|+|+|++|++++.      |+.++|||+ +|..+  +..|...+..++|+|++..+
T Consensus       268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l  341 (354)
T 2pbi_B          268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF  341 (354)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEE
Confidence            99998877766543    5678999999999999995      999999998 56655  44678899999999998877


Q ss_pred             CCC
Q 020756          227 FGD  229 (321)
Q Consensus       227 ~~~  229 (321)
                      ++.
T Consensus       342 ~sg  344 (354)
T 2pbi_B          342 CSG  344 (354)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.86  E-value=7.3e-20  Score=178.78  Aligned_cols=198  Identities=16%  Similarity=0.250  Sum_probs=159.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++..    +.+.....+......+.|+|+|+.|+....     .     |  .+.+++..+..... ...|.
T Consensus       323 ~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----d-----g--~v~~~~~~~~~~~~-~~~~~  385 (577)
T 2ymu_A          323 DDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASASD-----D-----K--TVKLWNRNGQLLQT-LTGHS  385 (577)
T ss_dssp             TTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEET-----T-----S--EEEEEETTCCEEEE-EECCS
T ss_pred             CCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEeC-----C-----C--EEEEEcCCCCEEEE-ecCCC
Confidence            467899999755    455555556677788999999999877521     0     2  24555555543222 23578


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..|.+++|+|+|++|++.  ..++.|.+||..++.+..+  |...+.++.|+||+++|++++   .++.|++||+ +++.
T Consensus       386 ~~v~~~~~s~dg~~l~~~--~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---~d~~v~~w~~-~~~~  459 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTIASA--SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS---DDKTVKLWNR-NGQL  459 (577)
T ss_dssp             SCEEEEEECTTSSCEEEE--ETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEET-TSCE
T ss_pred             CCeEEEEECCCCCEEEEE--eCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEc---CCCEEEEEEC-CCCE
Confidence            899999999999999884  6688999999988777766  788999999999999999999   8999999997 5666


Q ss_pred             EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756          161 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       161 i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +..+..|  .+..++|||||++|++++.      |+.|+||+.+|+++  +..|...+..++|+|++..+++.
T Consensus       460 ~~~~~~~~~~v~~~~~spd~~~las~~~------d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~  526 (577)
T 2ymu_A          460 LQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA  526 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEE
Confidence            7777665  7889999999999999994      99999999999877  55677899999999999888765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.86  E-value=2.5e-19  Score=161.99  Aligned_cols=203  Identities=9%  Similarity=0.092  Sum_probs=156.5

Q ss_pred             CceEEEEEcCCcCCCCceeeee--cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeeeec
Q 020756            4 PASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPL   79 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~--~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v~l   79 (321)
                      .+.|+||++........+....  -.......+.|+|+|++|++... +         |  .+.+++.....  ......
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------~--~i~~~d~~~~~~~~~~~~~  138 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-A---------S--TLSIWDLAAPTPRIKAELT  138 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES-S---------S--EEEEEECCCC--EEEEEEE
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC-C---------C--cEEEEECCCCCcceeeecc
Confidence            7899999998732122333333  34567789999999998877521 0         2  35555655442  222233


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .|...|.+++|+|+++.|++.  ..++.+.+||++. ..+..+  |...+.++.|+|+|++|++++   .++.|++||++
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~--~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~~~d~~  213 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSC--CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG---LDNTVRSWDLR  213 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETT
T ss_pred             cCCCceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe---cCCcEEEEECC
Confidence            578899999999999999885  6688999999965 455555  678899999999999999998   89999999999


Q ss_pred             CCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756          157 DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       157 ~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +++.+..+... .+..++|+|+|++|++++.      ++.+++|++....+  ...+...+..+.|+|+...++..
T Consensus       214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (337)
T 1gxr_A          214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGME------SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             TTEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEeeecCCCceEEEEECCCCCEEEEEcC------CCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEe
Confidence            99888877664 7889999999999999994      89999999965544  44566789999999998877754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.86  E-value=1.8e-19  Score=165.96  Aligned_cols=203  Identities=15%  Similarity=0.098  Sum_probs=150.6

Q ss_pred             CCCceEEEEEcCCcCC----CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            2 GSPASVQIYACGKDLQ----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~----~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      +.++.|+||++.....    +.+......+...+..+.|+|+|.+|+... .|         +  .+.+++.........
T Consensus        46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s-~D---------~--~v~lwd~~~~~~~~~  113 (343)
T 2xzm_R           46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS-WD---------K--TLRLWDLRTGTTYKR  113 (343)
T ss_dssp             ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE-TT---------S--EEEEEETTSSCEEEE
T ss_pred             cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc-CC---------C--cEEEEECCCCcEEEE
Confidence            3568999999976210    123344445566788999999999876542 11         2  355666654433333


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-----CCcCeeeEEEcCCC----------CeEEEEc
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKG----------KFLCLAG  142 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-----~~~~~~~~~~sPdG----------~~l~~~g  142 (321)
                      ...|.+.|.+++|+|+|++|+++  ..|+.|++||+.+.....+     |...+.++.|+|++          .+|++++
T Consensus       114 ~~~h~~~v~~v~~sp~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          114 FVGHQSEVYSVAFSPDNRQILSA--GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             EECCCSCEEEEEECSSTTEEEEE--ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             EcCCCCcEEEEEECCCCCEEEEE--cCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence            34689999999999999999885  6689999999976655443     56679999999997          7899998


Q ss_pred             cCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCce-eEE-eccCceEEE
Q 020756          143 FGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSL-FFK-KMFDKLFQA  217 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~-l~~-~~~~~~~~~  217 (321)
                         .|+.|++||. +.+.+..+..|  .+..++|+|||++|++++.      |+.|+|||+ .... ... .+...+..+
T Consensus       192 ---~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~------dg~v~iwd~~~~~~~~~~~~~~~~v~~v  261 (343)
T 2xzm_R          192 ---WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK------DKKLLIWDILNLTYPQREFDAGSTINQI  261 (343)
T ss_dssp             ---TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET------TCEEEEEESSCCSSCSEEEECSSCEEEE
T ss_pred             ---CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC------CCeEEEEECCCCcccceeecCCCcEEEE
Confidence               8999999995 56666667665  7889999999999999994      999999998 3332 222 244579999


Q ss_pred             EEecCCCCCCC
Q 020756          218 EWKPVSPDKFG  228 (321)
Q Consensus       218 ~w~P~~~~~~~  228 (321)
                      +|+|+...+..
T Consensus       262 ~~sp~~~~la~  272 (343)
T 2xzm_R          262 AFNPKLQWVAV  272 (343)
T ss_dssp             EECSSSCEEEE
T ss_pred             EECCCCCEEEE
Confidence            99999765543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.86  E-value=6.8e-20  Score=168.70  Aligned_cols=172  Identities=13%  Similarity=0.142  Sum_probs=138.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++.+.....+......+.|+|+|++++... .|         |  .+.+++............|.
T Consensus       162 ~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~-~d---------~--~v~~wd~~~~~~~~~~~~h~  226 (340)
T 1got_B          162 GDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLFVSGA-CD---------A--SAKLWDVREGMCRQTFTGHE  226 (340)
T ss_dssp             TTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEEE-TT---------S--CEEEEETTTCSEEEEECCCS
T ss_pred             CCCcEEEEECCC---CcEEEEEcCCCCceEEEEECCCCCEEEEEe-CC---------C--cEEEEECCCCeeEEEEcCCc
Confidence            468899999998   677777776778889999999999776542 11         2  25566665443333334588


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-C---CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~---~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ..|.+++|+|+|+.|++.  ..|+.|++||++.. .+..+ +   ...+.++.|+|+|++|++++   .++.|++||+.+
T Consensus       227 ~~v~~v~~~p~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~d~~i~vwd~~~  301 (340)
T 1got_B          227 SDINAICFFPNGNAFATG--SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALK  301 (340)
T ss_dssp             SCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE---TTSEEEEEETTT
T ss_pred             CCEEEEEEcCCCCEEEEE--cCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC---CCCeEEEEEccc
Confidence            999999999999999884  67899999999654 45555 2   23689999999999999999   899999999999


Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ++.+..+.+|  .+.+++|+|||++|++++.      |+.|+|||
T Consensus       302 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------D~~i~iWd  340 (340)
T 1got_B          302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFLKIWN  340 (340)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSCEEEEC
T ss_pred             CcEeeEeecCCCcEEEEEEcCCCCEEEEEcC------CccEEecC
Confidence            9988888877  7889999999999999994      99999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.86  E-value=1.4e-19  Score=170.07  Aligned_cols=201  Identities=14%  Similarity=0.162  Sum_probs=152.2

Q ss_pred             CCceEEEEEcCCcCCCCceeeeeccc------------------CccceEEeCCCCCeeEEEEEecccCCCceeecceeE
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFR------------------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL   64 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~------------------~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l   64 (321)
                      ....|+||++..   ++.+.......                  ..+..+.|+|+|++|+... .  |       |  .+
T Consensus        83 ~~~~v~i~~~~~---g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~-~--d-------~--~i  147 (393)
T 1erj_A           83 CNKTTQVYRVSD---GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA-E--D-------R--LI  147 (393)
T ss_dssp             CBSCEEEEETTT---CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE-T--T-------S--CE
T ss_pred             cCCcEEEEEecC---CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc-C--C-------C--eE
Confidence            346799999987   55554433221                  1256899999999987642 1  1       2  35


Q ss_pred             EEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcC-CCCeEEEE
Q 020756           65 NYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNP-KGKFLCLA  141 (321)
Q Consensus        65 ~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sP-dG~~l~~~  141 (321)
                      .+++............|.+.|.+++|+|+|+.|++.  ..|+.+++||++.. ....+ +...+.++.|+| +|++|+++
T Consensus       148 ~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (393)
T 1erj_A          148 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG--SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG  225 (393)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEE
T ss_pred             EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEe--cCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEE
Confidence            666766553334444689999999999999999874  66899999999654 44444 677899999999 89999999


Q ss_pred             ccCCCCCcEEEEECCCCeEEEee-------eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---------
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTT-------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---------  203 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~-------~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---------  203 (321)
                      +   .++.|++||+.+++.+..+       ..|  .+..++|+|||++|++++.      |+.|+|||+..         
T Consensus       226 s---~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------d~~v~~wd~~~~~~~~~~~~  296 (393)
T 1erj_A          226 S---LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL------DRSVKLWNLQNANNKSDSKT  296 (393)
T ss_dssp             E---TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET------TSEEEEEEC-----------
T ss_pred             c---CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC------CCEEEEEECCCCCCcccccC
Confidence            9   8999999999998877665       233  6889999999999999994      99999999843         


Q ss_pred             ----cee--EEeccCceEEEEEecCCCCCCCC
Q 020756          204 ----SLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       204 ----~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                          .+.  +..|...+..+.|+|+...+++.
T Consensus       297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  328 (393)
T 1erj_A          297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSG  328 (393)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred             CCCCcceEEEecccCcEEEEEECCCCCEEEEE
Confidence                122  44577789999999998887765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.86  E-value=4.8e-21  Score=177.34  Aligned_cols=201  Identities=15%  Similarity=0.117  Sum_probs=150.0

Q ss_pred             CCCceEEEEEcCCcCCC--CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc---eee
Q 020756            2 GSPASVQIYACGKDLQS--QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH---EGL   76 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~--~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~---~~~   76 (321)
                      +..+.|+||++..   +  +.+.....+......+.|+|+|++|+... .  |       |.  +.+++.....   ...
T Consensus        30 ~~d~~i~iw~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~--d-------~~--v~vwd~~~~~~~~~~~   94 (377)
T 3dwl_C           30 TATNQVELYEQDG---NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-Q--D-------RN--AYVYEKRPDGTWKQTL   94 (377)
T ss_dssp             CSSSCBCEEEEET---TEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-T--T-------SS--EEEC------CCCCEE
T ss_pred             cCCCEEEEEEccC---CceEEEEEEecCCceEEEEEEeCCCCEEEEEe-C--C-------Ce--EEEEEcCCCCceeeee
Confidence            3678999999987   5  55666666677888999999999887652 1  1       22  3444443332   223


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce----eEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----ILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD  149 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~----~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~  149 (321)
                      ....|.+.|.+++|+|+|+.|++.  ..++.+.+||++...    ...+   |...+.++.|+|+|++|++++   .++.
T Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---~d~~  169 (377)
T 3dwl_C           95 VLLRLNRAATFVRWSPNEDKFAVG--SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC---ADRK  169 (377)
T ss_dssp             ECCCCSSCEEEEECCTTSSCCEEE--ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE---SSSC
T ss_pred             EecccCCceEEEEECCCCCEEEEE--ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe---CCCE
Confidence            334588999999999999999885  668899999996542    4444   678899999999999999999   8999


Q ss_pred             EEEEECC------------------CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cce---
Q 020756          150 MAFWDYV------------------DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSL---  205 (321)
Q Consensus       150 i~iwD~~------------------~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~---  205 (321)
                      |++||+.                  .++++..+ .|  .+..++|+|||++|++++.      |+.|+|||+. ++.   
T Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH------DSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET------TTEEC-CEECSTTSCEE
T ss_pred             EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC------CCcEEEEECCCCCCcce
Confidence            9999985                  34566666 44  6889999999999999994      9999999995 433   


Q ss_pred             -e--EEeccCceEEEEEecCCCCCCCC
Q 020756          206 -F--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       206 -l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                       +  ...+...+..+.|+|++..++..
T Consensus       243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          243 ALITVKLSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             ECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred             eeEeecCCCCceEEEEEcCCCCEEEEE
Confidence             3  55677789999999998777654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.86  E-value=3.7e-19  Score=160.81  Aligned_cols=201  Identities=8%  Similarity=0.089  Sum_probs=154.2

Q ss_pred             CCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            3 SPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      ..+.|+||++..   ++  ..............+.|+|+|++|++...            ...+++++............
T Consensus       117 ~d~~i~~~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------dg~v~~~d~~~~~~~~~~~~  181 (337)
T 1gxr_A          117 EASTLSIWDLAA---PTPRIKAELTSSAPACYALAISPDSKVCFSCCS------------DGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             SSSEEEEEECCC---C--EEEEEEECSSSCEEEEEECTTSSEEEEEET------------TSCEEEEETTTTEEEEEECC
T ss_pred             CCCcEEEEECCC---CCcceeeecccCCCceEEEEECCCCCEEEEEeC------------CCcEEEEeCCCCceeeeeec
Confidence            468899999988   44  33444445566789999999998877521            11256667655533333334


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      |.+.|.+++|+|+++.|++.  ..++.+.+||++.. .+..+ +...+.++.|+|+|++|++++   .++.|++||+.++
T Consensus       182 ~~~~i~~~~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~  256 (337)
T 1gxr_A          182 HTDGASCIDISNDGTKLWTG--GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKP  256 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSS
T ss_pred             ccCceEEEEECCCCCEEEEE--ecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCC
Confidence            78899999999999999885  66889999999644 44455 678899999999999999998   8899999999988


Q ss_pred             eEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee-EEeccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF-FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l-~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +......+. .+..++|+|||++|++++.      |+.+++|++. ++.+ ...+...+..+.|+|+...++..
T Consensus       257 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  324 (337)
T 1gxr_A          257 DKYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             CEEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             CeEEEcCCccceeEEEECCCCCEEEEecC------CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEe
Confidence            765443332 7889999999999999994      9999999985 4444 33466789999999998776654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.86  E-value=2.2e-20  Score=173.66  Aligned_cols=201  Identities=10%  Similarity=0.082  Sum_probs=141.6

Q ss_pred             CCceEEEEEcCCcCCCCceeeee----cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            3 SPASVQIYACGKDLQSQPLARRS----FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~----~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      ..+.|+||++.+   ++.+....    -+...+..+.|+|+|++|+... .  |       |  .+.+++..........
T Consensus       113 ~dg~v~lWd~~~---~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-~--d-------g--~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          113 DSGAVELWEILE---KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-K--D-------F--SVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             TTSCEEEC-----------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-T--T-------S--CEEEEETTTTEEEEEE
T ss_pred             CCCEEEEeeccc---cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-C--C-------C--eEEEEECCCCcEEEEE
Confidence            467899999988   44433222    2345678899999999987642 1  1       2  2556666555333333


Q ss_pred             cCCCCCeEEEEECcCCCE-EEEEEccCCCeEEEEeCCC-ceeEEe----CCcCeeeEEEcCCC-CeEEEEccCCCCCcEE
Q 020756           79 LRKEGPVHDVQWSYSGSE-FAVVYGFMPASATIFNKKC-RPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMA  151 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~-l~~~~g~~~~~i~i~d~~~-~~~~~~----~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~  151 (321)
                      ..|.+.|.+++|+|++.. |++  +..++.|.|||++. +.+..+    +...+.++.|+|++ .+|++++   .++.|+
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~---~d~~i~  252 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLS--CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD---ETGNVS  252 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEE--EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE---SSSCEE
T ss_pred             cCCCCCEEEEEEccCCCceeee--eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee---ccccee
Confidence            358899999999999874 444  46689999999954 333332    46678999999986 4667777   789999


Q ss_pred             EEECCCCeEEEeeeCC--CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEeecCc-ee-EEeccCceEEEEEec-CCCC
Q 020756          152 FWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS-LF-FKKMFDKLFQAEWKP-VSPD  225 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~--~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~~g~-~l-~~~~~~~~~~~~w~P-~~~~  225 (321)
                      +||+++++++..+..+  .++.++|||+| ++|++++      .|+.|+|||+... ++ ...|...|..++|+| ++..
T Consensus       253 ~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs------~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~  326 (357)
T 4g56_B          253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS------EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSK  326 (357)
T ss_dssp             EEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE------TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred             EEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe------CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCE
Confidence            9999999888888766  78999999997 5778887      4999999999644 44 335778999999999 4555


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      +++.
T Consensus       327 l~s~  330 (357)
T 4g56_B          327 FTTV  330 (357)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.86  E-value=1.3e-19  Score=166.50  Aligned_cols=202  Identities=13%  Similarity=0.137  Sum_probs=156.0

Q ss_pred             CCCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-e-eee
Q 020756            2 GSPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-E-GLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~-~~v   77 (321)
                      +..+.|+||++..   ++  .+.....+......+.|+|+|++|++.. .|         |.  +.+++..... . ...
T Consensus        27 ~~d~~v~i~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d---------g~--i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           27 PNNHEVHIYEKSG---NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TD---------RN--AYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             CSSSEEEEEEEET---TEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TT---------SC--EEEEEEETTEEEEEEE
T ss_pred             eCCCEEEEEeCCC---CcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CC---------Ce--EEEEECCCCeeeeeEE
Confidence            3678999999988   55  6666666778888999999999887752 11         33  3444443331 1 222


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce----eEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----ILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~----~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      ...|...|.+++|+|+|++|++.  ..++.+.+||+....    ...+   |...+.++.|+|+|++|++++   .++.|
T Consensus        92 ~~~~~~~v~~~~~~~~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i  166 (372)
T 1k8k_C           92 ILRINRAARCVRWAPNEKKFAVG--SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS---CDFKC  166 (372)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEE--ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE---TTSCE
T ss_pred             eecCCCceeEEEECCCCCEEEEE--eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc---CCCCE
Confidence            24578899999999999999885  567899999985432    2333   578899999999999999998   89999


Q ss_pred             EEEEC------------------CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--E
Q 020756          151 AFWDY------------------VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--F  207 (321)
Q Consensus       151 ~iwD~------------------~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~  207 (321)
                      ++||+                  ..++++..+..+  .+..++|+|+|++|++++.      |+.++|||+ +++.+  +
T Consensus       167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKMAVATL  240 (372)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTTEEEEE
T ss_pred             EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC------CCEEEEEECCCCceeEEE
Confidence            99995                  367788877665  6889999999999999994      999999999 56665  4


Q ss_pred             EeccCceEEEEEecCCCCCCCC
Q 020756          208 KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       208 ~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ..+...+..+.|+|+...++..
T Consensus       241 ~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          241 ASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             ECSSCCEEEEEEEETTEEEEEE
T ss_pred             ccCCCCeEEEEEecCCCEEEEE
Confidence            4466689999999998766554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.4e-19  Score=163.45  Aligned_cols=202  Identities=13%  Similarity=0.182  Sum_probs=142.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeee-ec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC------c
Q 020756            2 GSPASVQIYACGKDLQSQPLARR-SF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------H   73 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~-~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~------~   73 (321)
                      +..+.|+||++.... ...+... .. +...+..+.|+|+|++|+... .  |       +.  +.+++....      .
T Consensus        31 ~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~--D-------~~--v~iw~~~~~~~~~~~~   97 (330)
T 2hes_X           31 STDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-F--D-------ST--VSIWAKEESADRTFEM   97 (330)
T ss_dssp             ESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEE-T--T-------SC--EEEEEC-------CCC
T ss_pred             cCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEe-C--C-------Cc--EEEEEcccCcCccccc
Confidence            457899999998721 1223322 11 556778999999999877642 1  1       33  333333211      1


Q ss_pred             e-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-C----ceeEEe--CCcCeeeEEEcCCCCeEEEEccCC
Q 020756           74 E-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C----RPILEL--GSGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        74 ~-~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~----~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                      . ......|.+.|.+++|+|+|++|+++  ..|+.|+|||++ .    ..+..+  |...+.++.|+|+|++|++++   
T Consensus        98 ~~~~~~~~h~~~V~~v~~sp~g~~las~--s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---  172 (330)
T 2hes_X           98 DLLAIIEGHENEVKGVAWSNDGYYLATC--SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS---  172 (330)
T ss_dssp             EEEEEEC----CEEEEEECTTSCEEEEE--ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE---
T ss_pred             eeEEEEcCCCCcEEEEEECCCCCEEEEE--eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc---
Confidence            1 12223588999999999999999885  668999999983 2    234445  778899999999999999999   


Q ss_pred             CCCcEEEEECCCC--eEEEeeeCC--CeeeEEEccC--CCEEEEEEcCCceeecCcEEEEeecCc---------eeE--E
Q 020756          146 LPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPD--GRYFMTATTAPRLQIDNGIKIFHHNGS---------LFF--K  208 (321)
Q Consensus       146 ~~g~i~iwD~~~~--~~i~~~~~~--~~~~~~wSpd--G~~l~t~~s~~rl~~d~~v~iw~~~g~---------~l~--~  208 (321)
                      .|+.|++||..++  +++..+..|  .+..++|+|+  +.+|++++.      |+.|+||++.+.         .+.  .
T Consensus       173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------D~~v~iw~~~~~~~~~~~~~~~~~~~~  246 (330)
T 2hes_X          173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD------DSTVRVWKYMGDDEDDQQEWVCEAILP  246 (330)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET------TSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred             CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC------CCeEEEEEecCCCccccceeEEeeecc
Confidence            8999999998776  677778776  7889999999  778999984      999999998542         121  1


Q ss_pred             -eccCceEEEEEecCCCCCCC
Q 020756          209 -KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       209 -~~~~~~~~~~w~P~~~~~~~  228 (321)
                       .|...++.++|+|.. .+++
T Consensus       247 ~~h~~~v~~v~~s~~~-~l~s  266 (330)
T 2hes_X          247 DVHKRQVYNVAWGFNG-LIAS  266 (330)
T ss_dssp             SCCSSCEEEEEECTTS-CEEE
T ss_pred             cccccceEEEEEcCCC-EEEE
Confidence             266789999999654 4444

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.85  E-value=2.4e-19  Score=162.12  Aligned_cols=202  Identities=17%  Similarity=0.264  Sum_probs=156.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+.....+......+.|+|+|++|+....   |       |  .+.+++............|
T Consensus        84 ~~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d-------~--~i~iwd~~~~~~~~~~~~~  148 (312)
T 4ery_A           84 SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---D-------E--SVRIWDVKTGKCLKTLPAH  148 (312)
T ss_dssp             ETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEEEET---T-------S--CEEEEETTTCCEEEEECCC
T ss_pred             CCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC---C-------C--cEEEEECCCCEEEEEecCC
Confidence            3578999999998   6777777777778889999999998876421   1       2  2566666544333333357


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ..+|.++.|+|+|+.|++.  ..++.+.+||++. ..+..+   +...+..+.|+|+|++|++++   .++.|++||+.+
T Consensus       149 ~~~v~~~~~~~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~  223 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSK  223 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTT
T ss_pred             CCcEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCC
Confidence            8899999999999998884  6788999999964 444554   456789999999999999998   899999999999


Q ss_pred             CeEEEeeeCCC----eeeEEEc-cCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          158 GKQLGTTRAEC----SVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       158 ~~~i~~~~~~~----~~~~~wS-pdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++++..+..+.    .....|+ ++|++|++++.      |+.|+|||+. ++++  +..|...+..++|+|+...+++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT------TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC------CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence            99888887651    2234455 67889998884      9999999995 4444  44577899999999998877654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.85  E-value=2.3e-19  Score=168.48  Aligned_cols=194  Identities=11%  Similarity=0.184  Sum_probs=150.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|+|+|++|+...            ....+.+++.... .....+.+
T Consensus       142 ~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------------~d~~v~iwd~~~~-~~~~~~~~  205 (393)
T 1erj_A          142 AEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSGS------------GDRTVRIWDLRTG-QCSLTLSI  205 (393)
T ss_dssp             ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEEE------------TTSEEEEEETTTT-EEEEEEEC
T ss_pred             cCCCeEEEEECCC---CcEEEEEccCCCCEEEEEEcCCCCEEEEec------------CCCcEEEEECCCC-eeEEEEEc
Confidence            3568899999988   677777777778889999999999886642            1123566666554 34445557


Q ss_pred             CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCc-eeEEe---------CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           82 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        82 ~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      ...+..++|+| +|++|++  +..++.|.+||++.. .+..+         |...+.++.|+|+|++|++++   .|+.|
T Consensus       206 ~~~v~~~~~~~~~~~~l~~--~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~d~~v  280 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAA--GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---LDRSV  280 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEE--EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE---TTSEE
T ss_pred             CCCcEEEEEECCCCCEEEE--EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe---CCCEE
Confidence            78899999999 8888887  467899999998643 33333         567899999999999999999   89999


Q ss_pred             EEEECCCC------------eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCc
Q 020756          151 AFWDYVDG------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDK  213 (321)
Q Consensus       151 ~iwD~~~~------------~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~  213 (321)
                      ++||+.+.            .+...+..|  .+..++|+|+|++|++++.      |+.++|||+. |+.+  +..|...
T Consensus       281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~~~~l~~h~~~  354 (393)
T 1erj_A          281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQGHRNS  354 (393)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEECCCCCC
Confidence            99999753            344455555  6888999999999999994      9999999984 5554  5568889


Q ss_pred             eEEEEEecC
Q 020756          214 LFQAEWKPV  222 (321)
Q Consensus       214 ~~~~~w~P~  222 (321)
                      +..+.|+|.
T Consensus       355 v~~v~~~~~  363 (393)
T 1erj_A          355 VISVAVANG  363 (393)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEecCC
Confidence            999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.85  E-value=1.6e-19  Score=168.90  Aligned_cols=213  Identities=10%  Similarity=0.136  Sum_probs=158.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecc-------c-----------------CC---
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-------D-----------------KT---   54 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~-------d-----------------~t---   54 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|+|+|++|+... .|.       .                 .+   
T Consensus        85 s~D~~v~iWd~~~---~~~~~~~~~h~~~v~~~~~s~~g~~las~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v  160 (380)
T 3iz6_a           85 SQDGRLIVWNALT---SQKTHAIKLHCPWVMECAFAPNGQSVACGG-LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA  160 (380)
T ss_dssp             ETTSEEEEEETTT---TEEEEEEECCCTTCCCCEECTTSSEEEECC-SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCC
T ss_pred             eCCCeEEEEECCC---CccceEEecCCCCEEEEEECCCCCEEEEee-CCCcEEEEECCCCccccCCccceeeccCCCcce
Confidence            4578999999988   677777777777888999999999887532 110       0                 00   


Q ss_pred             ---------C-cee--ecceeEEEEEcCCCceeeee-----cCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCC--
Q 020756           55 ---------N-QSY--YGESKLNYLTTDGTHEGLVP-----LRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK--  114 (321)
Q Consensus        55 ---------~-~s~--~g~~~l~~l~~~g~~~~~v~-----l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~--  114 (321)
                               + ...  .....+.++++.........     ..|...|.++.|+| ++..|++  |..|+.|++||++  
T Consensus       161 ~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s--gs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS--GSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE--EETTSCEEEEETTTT
T ss_pred             EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE--EECCCeEEEEECCCC
Confidence                     0 000  01123444444333211111     34778999999987 7777777  5678999999985  


Q ss_pred             CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---------CeeeEEEccCCCEEEE
Q 020756          115 CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMT  183 (321)
Q Consensus       115 ~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---------~~~~~~wSpdG~~l~t  183 (321)
                      ...+..+  |...++++.|+|+|++|++++   .|+.|++||+++++++..+..+         .++.++|||+|++|++
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  315 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGS---DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA  315 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTSSEEEEEC---SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred             CcceEEECCcCCCeEEEEEecCCCeEEEEc---CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence            3455666  788999999999999999999   9999999999999888776543         2678999999999999


Q ss_pred             EEcCCceeecCcEEEEee-cCceeE------EeccCceEEEEEecCCCCCCCC
Q 020756          184 ATTAPRLQIDNGIKIFHH-NGSLFF------KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~-~g~~l~------~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++.      |+.++|||+ .++.+.      ..|...|..+.|+|++..+++.
T Consensus       316 g~~------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  362 (380)
T 3iz6_a          316 GYS------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG  362 (380)
T ss_dssp             ECT------TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred             EEC------CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence            985      999999998 455443      3466789999999999888765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.85  E-value=1.6e-19  Score=163.14  Aligned_cols=204  Identities=16%  Similarity=0.287  Sum_probs=150.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCC--CCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eee-e
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGL-V   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~--G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~-v   77 (321)
                      +..+.|+||++.... .+.+.....+...+..+.|+++  |++|+.. +.|         |.  +.+++..... ... .
T Consensus        28 s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~-s~D---------~~--v~iWd~~~~~~~~~~~   94 (297)
T 2pm7_B           28 SSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASC-SYD---------GK--VMIWKEENGRWSQIAV   94 (297)
T ss_dssp             ETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEE-ETT---------TE--EEEEEBSSSCBCCCEE
T ss_pred             eCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEEE-cCC---------CE--EEEEEcCCCceEEEEE
Confidence            357889999997521 3566666777788889999874  6666553 211         32  4445554331 122 2


Q ss_pred             ecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcCC-------------CCe
Q 020756           78 PLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNPK-------------GKF  137 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sPd-------------G~~  137 (321)
                      ...|...|.+++|+|+  |..|++.  ..|+.+.+||++..   ....+  |...++++.|+|+             +++
T Consensus        95 ~~~h~~~v~~v~~~p~~~g~~l~s~--s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~  172 (297)
T 2pm7_B           95 HAVHSASVNSVQWAPHEYGPMLLVA--SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEE--ETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE
T ss_pred             eecCCCceeEEEeCcCCCCcEEEEE--ECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce
Confidence            2347889999999998  8888874  67899999998643   12233  7889999999997             579


Q ss_pred             EEEEccCCCCCcEEEEECCCCe----EEEeeeCC--CeeeEEEccCC---CEEEEEEcCCceeecCcEEEEeecCc----
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPDG---RYFMTATTAPRLQIDNGIKIFHHNGS----  204 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~----~i~~~~~~--~~~~~~wSpdG---~~l~t~~s~~rl~~d~~v~iw~~~g~----  204 (321)
                      |++++   .|+.|+|||+++++    ++..+..|  .+..++|+|++   .+|++++.      |+.++|||+...    
T Consensus       173 l~sgs---~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~------D~~v~iWd~~~~~~~~  243 (297)
T 2pm7_B          173 FVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ------DRTCIIWTQDNEQGPW  243 (297)
T ss_dssp             EEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEEEESSTTSCC
T ss_pred             EEEEc---CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC------CCcEEEEEeCCCCCcc
Confidence            99998   89999999998764    56667766  68999999995   88999984      999999999642    


Q ss_pred             --eeE--EeccCceEEEEEecCCCCCCCC
Q 020756          205 --LFF--KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 --~l~--~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                        .+.  ..+...++.++|+|++..+++.
T Consensus       244 ~~~~~~~~~~~~~v~~~~~s~~g~~las~  272 (297)
T 2pm7_B          244 KKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (297)
T ss_dssp             EEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             ceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence              122  2355689999999999887765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.85  E-value=1.8e-19  Score=179.07  Aligned_cols=205  Identities=19%  Similarity=0.264  Sum_probs=153.4

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+.. .........+...+..+.|+|+|+.|+.... +.+..     +  .+++++. +. .......|.
T Consensus        79 ~d~~v~lWd~~~~~-~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~-~~~~~-----~--~v~~wd~-~~-~~~~l~gh~  147 (611)
T 1nr0_A           79 VHGNVRIWDTTQTT-HILKTTIPVFSGPVKDISWDSESKRIAAVGE-GRERF-----G--HVFLFDT-GT-SNGNLTGQA  147 (611)
T ss_dssp             TTSEEEEEESSSTT-CCEEEEEECSSSCEEEEEECTTSCEEEEEEC-CSSCS-----E--EEEETTT-CC-BCBCCCCCS
T ss_pred             CCCCEEEeECCCCc-ceeeEeecccCCceEEEEECCCCCEEEEEEC-CCCce-----e--EEEEeeC-CC-CcceecCCC
Confidence            57899999997621 2223344556778889999999999887531 11111     1  3455442 22 112223588


Q ss_pred             CCeEEEEECcCCCE-EEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           83 GPVHDVQWSYSGSE-FAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        83 ~~v~~~~wsP~g~~-l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      +.|.+++|+|++.. |++  +..|+.+++||... +.+..+  |...+++++|+|||++|++++   .|+.|++||+.++
T Consensus       148 ~~v~~v~f~p~~~~~l~s--~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s---~D~~i~lwd~~~g  222 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIIS--GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG---GDGTIVLYNGVDG  222 (611)
T ss_dssp             SCEEEEEECSSSSCEEEE--EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTC
T ss_pred             CCceEEEECCCCCeEEEE--EeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE---CCCcEEEEECCCC
Confidence            99999999999974 665  56789999999854 445555  788999999999999999999   9999999999999


Q ss_pred             eEEEeee-------CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee----------------------
Q 020756          159 KQLGTTR-------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF----------------------  206 (321)
Q Consensus       159 ~~i~~~~-------~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l----------------------  206 (321)
                      +++..+.       .|  .+..++|+|||++|++++.      |+.++|||+. ++++                      
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~------D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC------CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            8887773       34  7889999999999999994      9999999984 3322                      


Q ss_pred             -----------------------EEeccCceEEEEEecCCCCCCCC
Q 020756          207 -----------------------FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 -----------------------~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                                             ...|...+..++|+|++..+++.
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~  342 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA  342 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE
Confidence                                   12356689999999998887765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.85  E-value=1.1e-19  Score=167.89  Aligned_cols=177  Identities=17%  Similarity=0.313  Sum_probs=137.1

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  106 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~---~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~  106 (321)
                      ....+.|||+|++|+... .  |       +.  +.+++..+...   ..+...|.+.|.+++|+|+|++|++.  ..|+
T Consensus        18 ~v~~l~~sp~g~~las~~-~--D-------~~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~--s~D~   83 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCG-G--D-------RR--IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA--SFDA   83 (345)
T ss_dssp             CEEEEEECTTSSCEEEEE-T--T-------SC--EEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE--ETTS
T ss_pred             cEEEEEECCCCCEEEEEc-C--C-------Ce--EEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE--ECCC
Confidence            566899999999887652 1  1       33  33344433311   11223588999999999999999884  6789


Q ss_pred             eEEEEeCCCc---eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC---eEEEeeeCC--CeeeEEEcc
Q 020756          107 SATIFNKKCR---PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSP  176 (321)
Q Consensus       107 ~i~i~d~~~~---~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~---~~i~~~~~~--~~~~~~wSp  176 (321)
                      .+.|||+...   .+..+  |...+.+++|+|+|++|++++   .|+.|++||+.++   +++..+..|  .+..++|+|
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS---RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE---CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            9999998543   34455  788999999999999999999   8999999999865   455666655  688999999


Q ss_pred             CCCEEEEEEcCCceeecCcEEEEeecCce-e----EEeccCceEEEEEecCCCCCCCC
Q 020756          177 DGRYFMTATTAPRLQIDNGIKIFHHNGSL-F----FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       177 dG~~l~t~~s~~rl~~d~~v~iw~~~g~~-l----~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +|++|++++.      |+.++||+..... .    ...|...|+.++|+|++..+++.
T Consensus       161 ~~~~l~s~s~------d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~  212 (345)
T 3fm0_A          161 SQELLASASY------DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC  212 (345)
T ss_dssp             SSSCEEEEET------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEEeC------CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            9999999994      9999999986432 1    44577899999999998877765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.85  E-value=4.3e-19  Score=164.57  Aligned_cols=204  Identities=8%  Similarity=0.109  Sum_probs=156.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC----ceeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~----~~~~v   77 (321)
                      |.++.|+||+...   +...............+.|+|+|..|+...   .|       +...+|.+.....    .....
T Consensus        83 s~Dg~v~vWd~~~---~~~~~~~~~~~~~v~~~~~sp~g~~lasg~---~d-------~~i~v~~~~~~~~~~~~~~~~~  149 (354)
T 2pbi_B           83 SQDGKVIVWDSFT---TNKEHAVTMPCTWVMACAYAPSGCAIACGG---LD-------NKCSVYPLTFDKNENMAAKKKS  149 (354)
T ss_dssp             ETTSEEEEEETTT---CCEEEEEECSSSCCCEEEECTTSSEEEEES---TT-------SEEEEEECCCCTTCCSGGGCEE
T ss_pred             eCCCeEEEEECCC---CCcceEEecCCCCEEEEEECCCCCEEEEee---CC-------CCEEEEEEecccccccccccee
Confidence            4678999999988   666667777777788999999999987641   11       2223444332211    01111


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcC--CCCeEEEEccCCCCCcEEE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNP--KGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sP--dG~~l~~~g~~n~~g~i~i  152 (321)
                      ...|.+.|.++.|+|++..|+++  ..|+.|.+||+. +..+..+  |...+.++.|+|  +|++|++++   .|+.|++
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~--s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs---~Dg~v~~  224 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTA--SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG---CDKKAMV  224 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEE--ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE---TTSCEEE
T ss_pred             eeccCCcEEEEEEeCCCCEEEEE--eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe---CCCeEEE
Confidence            12478999999999999999885  568999999995 4455666  778899999988  578999999   8999999


Q ss_pred             EECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEEe----ccCceEEEEEecCCCC
Q 020756          153 WDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK----MFDKLFQAEWKPVSPD  225 (321)
Q Consensus       153 wD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~~----~~~~~~~~~w~P~~~~  225 (321)
                      ||+++++++..+..|  .+..++|+|+|.+|++++.      |+.++|||+... .+...    ....+..+.|+|++..
T Consensus       225 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  298 (354)
T 2pbi_B          225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD------DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL  298 (354)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             EECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence            999999999888776  7889999999999999994      999999999643 33222    1236789999999887


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      ++..
T Consensus       299 l~~g  302 (354)
T 2pbi_B          299 LFAG  302 (354)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.85  E-value=9.9e-20  Score=180.91  Aligned_cols=201  Identities=17%  Similarity=0.168  Sum_probs=154.9

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC-Cceee-eecCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGL-VPLRK   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g-~~~~~-v~l~~   81 (321)
                      ...|+||++.+   ++.+....-+...+..+.|||+|++|+....   |       |.  +.+++... ..... ....|
T Consensus        38 ~~~v~l~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~lasg~~---d-------~~--v~lWd~~~~~~~~~~~~~~~  102 (611)
T 1nr0_A           38 GTSVYTVPVGS---LTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---H-------GN--VRIWDTTQTTHILKTTIPVF  102 (611)
T ss_dssp             TTEEEEEETTC---SSCCEEECCCSSCEEEEEECTTSSEEEEEET---T-------SE--EEEEESSSTTCCEEEEEECS
T ss_pred             CCEEEEecCCC---cccCeEecCCCCceEEEEECCCCcEEEEEeC---C-------CC--EEEeECCCCcceeeEeeccc
Confidence            35799999987   5666666667778889999999999877521   1       22  45555532 21122 22247


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCC--CeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCe-EEEEccCCCCCcEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMP--ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~--~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~-l~~~g~~n~~g~i~iwD~~  156 (321)
                      .++|.+++|+|+|+.|+++....+  +.+.+||.. .....+  |...++++.|+|++.+ |++++   .|+.|++||..
T Consensus       103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s---~D~~v~lwd~~  178 (611)
T 1nr0_A          103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGS---DDNTVAIFEGP  178 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEE---TTSCEEEEETT
T ss_pred             CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeEEEEEe---CCCeEEEEECC
Confidence            899999999999999998743332  478888853 333344  7889999999999984 88888   89999999999


Q ss_pred             CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE---------eccCceEEEEEecCCC
Q 020756          157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK---------KMFDKLFQAEWKPVSP  224 (321)
Q Consensus       157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~---------~~~~~~~~~~w~P~~~  224 (321)
                      +++++..+..|  .+.+++|+|||++|++++.      |+.++|||+ +|+.+..         .|...++.+.|+|++.
T Consensus       179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~  252 (611)
T 1nr0_A          179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  252 (611)
T ss_dssp             TBEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             CCeEeeeeccccCceEEEEECCCCCEEEEEEC------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence            99998888877  6899999999999999994      999999997 4555422         4677999999999998


Q ss_pred             CCCCC
Q 020756          225 DKFGD  229 (321)
Q Consensus       225 ~~~~~  229 (321)
                      .+++.
T Consensus       253 ~l~s~  257 (611)
T 1nr0_A          253 KIASA  257 (611)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.85  E-value=1.1e-19  Score=169.64  Aligned_cols=208  Identities=13%  Similarity=0.056  Sum_probs=145.1

Q ss_pred             CCceEEEEEcCCcCC-CCceeeeecccC-----ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee
Q 020756            3 SPASVQIYACGKDLQ-SQPLARRSFFRC-----STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL   76 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~-~~~i~~~~~f~~-----~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~   76 (321)
                      ....||+|++..... ...+....+...     ....+.|||||++|++.+.. .         ...+.+++.... ...
T Consensus       102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~-~---------d~~i~iwd~~~~-~~~  170 (365)
T 4h5i_A          102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK-V---------PAIMRIIDPSDL-TEK  170 (365)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC-S---------SCEEEEEETTTT-EEE
T ss_pred             CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC-C---------CCEEEEeECCCC-cEE
Confidence            467899999876310 011222223221     13358999999999875311 1         123566676655 445


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe----CCcCeeeEEEcCCCCeEEEEccCCC-CCcE
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNL-PGDM  150 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~-~g~i  150 (321)
                      ..+.|.+.|.+++|+|||++|+++  ..+ .+.+|+. .+..+...    |...+.++.|+|+|++|++++..+. ...+
T Consensus       171 ~~~~~~~~V~~v~fspdg~~l~s~--s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          171 FEIETRGEVKDLHFSTDGKVVAYI--TGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL  247 (365)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEE--CSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred             EEeCCCCceEEEEEccCCceEEec--cce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence            556788899999999999999885  334 4555554 55544332    5677999999999999999873221 1268


Q ss_pred             EEEECCCCeE----EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE---eccCceEEEEEe
Q 020756          151 AFWDYVDGKQ----LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK---KMFDKLFQAEWK  220 (321)
Q Consensus       151 ~iwD~~~~~~----i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~---~~~~~~~~~~w~  220 (321)
                      .+||+.....    ...+..+  .+++++|||||++||+++.      |+.|+|||+ +++++..   .|...|+.++|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN------DNSIALVKLKDLSMSKIFKQAHSFAITEVTIS  321 (365)
T ss_dssp             EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET------TSCEEEEETTTTEEEEEETTSSSSCEEEEEEC
T ss_pred             eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC------CCEEEEEECCCCcEEEEecCcccCCEEEEEEC
Confidence            8899876643    2344444  6899999999999999995      999999999 4666533   477899999999


Q ss_pred             cCCCCCCCCc
Q 020756          221 PVSPDKFGDI  230 (321)
Q Consensus       221 P~~~~~~~~~  230 (321)
                      |++..+++..
T Consensus       322 pdg~~laS~S  331 (365)
T 4h5i_A          322 PDSTYVASVS  331 (365)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999888763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.85  E-value=7.7e-20  Score=169.53  Aligned_cols=180  Identities=12%  Similarity=0.131  Sum_probs=132.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeeec-
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL-   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~l-   79 (321)
                      +..+.|+||++.+   ++++.....+...+..+.|+++|..+++.++.|         |.  +.++++..... ..+.. 
T Consensus       146 s~d~~i~iwd~~~---~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D---------~~--v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          146 SKDICIKVWDLAQ---QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED---------NR--ILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECSSCTTEEEEEETT---------SC--EEEEETTSSSCEEECC--
T ss_pred             eCCCeEEEEECCC---CcEEEEEcCcCCceEEEEecCCCCCceeeeccc---------cc--cccccccccceeeeeecc
Confidence            3578999999998   788888777788889999999998877654322         22  45555543322 22221 


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEEC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~  155 (321)
                      .+...+.+++|+|++..++++ |..++.|+|||++ ++.+..+  |...++++.|+|+| ++|++++   .|+.|+|||+
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~s-g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs---~D~~i~vwd~  287 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVF-GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS---EDCSLAVLDS  287 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEE-EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECT
T ss_pred             eeeccceeeeecCCCCcceEE-eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe---CCCeEEEEEC
Confidence            245678999999976544433 5778999999995 4556666  78899999999998 5788888   8999999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccCCCEEE-EEEcCCceeecCcEEEEeecCcee
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~-t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      .+++++.. .+|  .+++++|||+|++|+ +++      .|+.|++|++..+.+
T Consensus       288 ~~~~~~~~-~~H~~~V~~v~~sp~~~~llas~s------~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          288 SLSELFRS-QAHRDFVRDATWSPLNHSLLTTVG------WDHQVVHHVVPTEPL  334 (344)
T ss_dssp             TCCEEEEE-CCCSSCEEEEEECSSSTTEEEEEE------TTSCEEEEECCC---
T ss_pred             CCCcEEEE-cCCCCCEEEEEEeCCCCeEEEEEc------CCCeEEEEECCCCCC
Confidence            99887654 444  789999999998654 666      499999999865443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.84  E-value=1.3e-19  Score=169.81  Aligned_cols=200  Identities=10%  Similarity=0.061  Sum_probs=148.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++........ .......|+++|++|++... +         |  .+.+++............|.
T Consensus        76 ~d~~v~i~d~~~---~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-d---------g--~i~iwd~~~~~~~~~~~~h~  139 (420)
T 3vl1_A           76 LDGHDFLFNTII---RDGSKMLKRA-DYTAVDTAKLQMRRFILGTT-E---------G--DIKVLDSNFNLQREIDQAHV  139 (420)
T ss_dssp             ETTEEEEEECCS---EETTTTSCSC-CEEEEEEECSSSCEEEEEET-T---------S--CEEEECTTSCEEEEETTSSS
T ss_pred             cCCcEEEEEecc---cceeeEEecC-CceEEEEEecCCCEEEEEEC-C---------C--CEEEEeCCCcceeeeccccc
Confidence            367899999988   3333222221 23344478999998877521 1         2  25566665543333323689


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      +.|.+++|+|+|+.|++.  ..++.|.+||+. +..+..+  |...+.++.|+|+|++|++++   .++.|++||+++++
T Consensus       140 ~~v~~~~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISS--SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS---LDGTIRLWECGTGT  214 (420)
T ss_dssp             SCEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE---TTSCEEEEETTTTE
T ss_pred             CccEEEEECCCCCEEEEE--eCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc---CCCcEEEeECCCCc
Confidence            999999999999988884  668999999995 4455555  788999999999999999999   89999999999998


Q ss_pred             EEEeeeC--------------------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE---e
Q 020756          160 QLGTTRA--------------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK---K  209 (321)
Q Consensus       160 ~i~~~~~--------------------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~---~  209 (321)
                      .+..+..                          ..+..++|+|+|++|++++.      |+.++|||+. ++.+..   .
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV------SGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET------TSCEEEEETTTCCEEEEECCT
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC------CCeEEEEECCCCceeEEcccc
Confidence            8888764                          23445677999999999995      9999999994 444433   2


Q ss_pred             ccCceEEEEEecCCC-CCCCC
Q 020756          210 MFDKLFQAEWKPVSP-DKFGD  229 (321)
Q Consensus       210 ~~~~~~~~~w~P~~~-~~~~~  229 (321)
                      +...+..+.|+|+.. .+++.
T Consensus       289 ~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             TSSCEEEEEECSSCTTEEEEE
T ss_pred             cCCCceeEEEeCCCCCEEEEE
Confidence            556899999999988 55543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.84  E-value=1.3e-18  Score=157.22  Aligned_cols=179  Identities=18%  Similarity=0.271  Sum_probs=141.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++..   ++.+.....+......+.|+|+|++|+....            ...+.+++............|
T Consensus        42 ~~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------------d~~i~vwd~~~~~~~~~~~~~  106 (312)
T 4ery_A           42 SADKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSDSNLLVSASD------------DKTLKIWDVSSGKCLKTLKGH  106 (312)
T ss_dssp             ETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEEET------------TSEEEEEETTTCCEEEEEECC
T ss_pred             eCCCeEEEEeCCC---cccchhhccCCCceEEEEEcCCCCEEEEECC------------CCEEEEEECCCCcEEEEEcCC
Confidence            3568899999988   6777777777788889999999998877521            113555666544333333357


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|.++.|+|+++.|++.  ..++.+.+||++. ..+..+  |...+.++.|+|+|++|++++   .++.|++||+.++
T Consensus       107 ~~~v~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~  181 (312)
T 4ery_A          107 SNYVFCCNFNPQSNLIVSG--SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASG  181 (312)
T ss_dssp             SSCEEEEEECSSSSEEEEE--ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTC
T ss_pred             CCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe---CCCcEEEEECCCC
Confidence            8899999999999998884  6788999999964 455555  678899999999999999999   8999999999999


Q ss_pred             eEEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          159 KQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       159 ~~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                      +.+..+...   .+..++|+|+|++|++++.      |+.++|||+. ++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLWDYSKGKCL  227 (312)
T ss_dssp             CEEEEECCSSCCCEEEEEECTTSSEEEEEET------TTEEEEEETTTTEEE
T ss_pred             ceeeEEeccCCCceEEEEECCCCCEEEEEcC------CCeEEEEECCCCcEE
Confidence            877766432   6778999999999999994      9999999995 4444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.84  E-value=3.6e-19  Score=179.14  Aligned_cols=201  Identities=16%  Similarity=0.207  Sum_probs=154.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee---
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP---   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~---   78 (321)
                      +..+.|+||++.+   +..+.....+...+..+.|+|+|+.|+... .  |       +  .+.+++..+.....+.   
T Consensus       449 s~Dg~v~vwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~--D-------~--~i~iwd~~~~~~~~~~~~~  513 (694)
T 3dm0_A          449 SWDGELRLWDLAA---GVSTRRFVGHTKDVLSVAFSLDNRQIVSAS-R--D-------R--TIKLWNTLGECKYTISEGG  513 (694)
T ss_dssp             ETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEEE-T--T-------S--CEEEECTTSCEEEEECSST
T ss_pred             eCCCcEEEEECCC---CcceeEEeCCCCCEEEEEEeCCCCEEEEEe-C--C-------C--EEEEEECCCCcceeeccCC
Confidence            3578999999998   677777777788899999999999987642 1  1       2  2445555443222221   


Q ss_pred             cCCCCCeEEEEECcCCC--EEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           79 LRKEGPVHDVQWSYSGS--EFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~--~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ..|...|.+++|+|++.  .|++  +..|+.|++||++.. .+..+  |...+.++.|+|+|++|++++   .|+.|+||
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s--~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~---~Dg~i~iw  588 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVS--ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG---KDGVVLLW  588 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSBCEEE
T ss_pred             CCCCCcEEEEEEeCCCCcceEEE--EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEE
Confidence            13778899999999984  4444  577899999999654 44555  788999999999999999999   89999999


Q ss_pred             ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EEec---------------------
Q 020756          154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FKKM---------------------  210 (321)
Q Consensus       154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~~~---------------------  210 (321)
                      |+.+++++..+..+ .+..++|||++.+|+++.       +++|+|||+....+ ....                     
T Consensus       589 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (694)
T 3dm0_A          589 DLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-------EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK  661 (694)
T ss_dssp             ETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-------TTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred             ECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-------CCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence            99999988887765 788899999999988877       88899999965433 2211                     


Q ss_pred             cCceEEEEEecCCCCCCCC
Q 020756          211 FDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       211 ~~~~~~~~w~P~~~~~~~~  229 (321)
                      ...+..+.|+|++..+++.
T Consensus       662 ~~~~~~l~~spdg~~l~sg  680 (694)
T 3dm0_A          662 VIYCTSLNWSADGSTLFSG  680 (694)
T ss_dssp             CCCEEEEEECTTSSEEEEE
T ss_pred             eEEeeeEEEcCCCCEEEEE
Confidence            1136789999999888765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.84  E-value=2.5e-19  Score=164.59  Aligned_cols=177  Identities=10%  Similarity=0.093  Sum_probs=137.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeee--cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~--~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v   77 (321)
                      +..+.|+||++..   ++......  -+......+.|+|+|++|++...     .     |...+|.+......  ...+
T Consensus        71 ~~dg~i~vwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d-----~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           71 GTDRNAYVWTLKG---RTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----S-----RVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             ETTSCEEEEEEET---TEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----T-----SSEEEEEEETTTTEEEEEEE
T ss_pred             cCCCeEEEEECCC---CeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----C-----CEEEEEEecCCCcceeeeee
Confidence            3568899999977   44433333  24567889999999998877531     1     33345555443321  1233


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-------------------CceeEEe--CCcCeeeEEEcCCCC
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL--GSGPYNTVRWNPKGK  136 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-------------------~~~~~~~--~~~~~~~~~~sPdG~  136 (321)
                      ...|...|.+++|+|+++.|++.  ..++.+.+||+.                   +..+..+  |...+.++.|+|+|+
T Consensus       138 ~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSVLLAAG--SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  215 (372)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEE--ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             ecccCCCeeEEEEcCCCCEEEEE--cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence            34578999999999999998884  668899999963                   4456666  677899999999999


Q ss_pred             eEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          137 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       137 ~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +|++++   .++.|++||+++++++..+..+  .+..++|+|+|++|+++.       |+.++||++..
T Consensus       216 ~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~i~~~~~  274 (372)
T 1k8k_C          216 RVAWVS---HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-------DCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEE---TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-------TSSCEEEEEET
T ss_pred             EEEEEe---CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEe-------CCeEEEEEccC
Confidence            999999   8999999999999988888776  788999999999888874       99999999965

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=7.7e-19  Score=160.48  Aligned_cols=203  Identities=16%  Similarity=0.212  Sum_probs=157.4

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+.....+......+.|+|+|++|++... |         |  .+.+++.... .....+.+
T Consensus        51 ~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d---------g--~i~iwd~~~~-~~~~~~~~  114 (369)
T 3zwl_B           51 SKDSSASVWYSLN---GERLGTLDGHTGTIWSIDVDCFTKYCVTGSA-D---------Y--SIKLWDVSNG-QCVATWKS  114 (369)
T ss_dssp             ESSSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEEET-T---------T--EEEEEETTTC-CEEEEEEC
T ss_pred             eCCCEEEEEeCCC---chhhhhhhhcCCcEEEEEEcCCCCEEEEEeC-C---------C--eEEEEECCCC-cEEEEeec
Confidence            3568899999998   7888877777888899999999998876521 1         2  3566666554 23333447


Q ss_pred             CCCeEEEEECcCCCEEEEEEcc---CCCeEEEEeCCCc------------eeEEe--CCc--CeeeEEEcCCCCeEEEEc
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKCR------------PILEL--GSG--PYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~---~~~~i~i~d~~~~------------~~~~~--~~~--~~~~~~~sPdG~~l~~~g  142 (321)
                      ..+|.+++|+|+++.|+++...   .++.+.+||+...            .+..+  +..  .+.++.|+|+|++|++++
T Consensus       115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (369)
T 3zwl_B          115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH  194 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc
Confidence            8899999999999999986321   1289999998422            22222  333  899999999999999998


Q ss_pred             cCCCCCcEEEEECCC-CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE-eccCceEEE
Q 020756          143 FGNLPGDMAFWDYVD-GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK-KMFDKLFQA  217 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~-~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~-~~~~~~~~~  217 (321)
                         .+|.|.+||+.+ ++.+..+..+  .+..++|+|||++|++++.      |+.++|||+. ++.+.. .+...+..+
T Consensus       195 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~  265 (369)
T 3zwl_B          195 ---KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR------DTNSFLVDVSTLQVLKKYETDCPLNTA  265 (369)
T ss_dssp             ---TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             ---CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC------CceEEEEECCCCceeeeecCCCCceeE
Confidence               889999999998 6888877765  7889999999999999984      9999999995 455433 355689999


Q ss_pred             EEecCCCCCCCC
Q 020756          218 EWKPVSPDKFGD  229 (321)
Q Consensus       218 ~w~P~~~~~~~~  229 (321)
                      .|+|+...++..
T Consensus       266 ~~~~~~~~l~~~  277 (369)
T 3zwl_B          266 VITPLKEFIILG  277 (369)
T ss_dssp             EECSSSSEEEEE
T ss_pred             EecCCCceEEEe
Confidence            999998877754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=7.3e-19  Score=166.87  Aligned_cols=199  Identities=11%  Similarity=0.109  Sum_probs=148.8

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ..|+||++.+   ++.. ....+......+.|||+|+.|++....+         |...||.++..+.....+ ..+...
T Consensus       203 ~~i~~~d~~t---g~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~~l-~~~~~~  268 (415)
T 2hqs_A          203 SALVIQTLAN---GAVR-QVASFPRHNGAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIRQV-TDGRSN  268 (415)
T ss_dssp             CEEEEEETTT---CCEE-EEECCSSCEEEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEEEC-CCCSSC
T ss_pred             cEEEEEECCC---CcEE-EeecCCCcccCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEEeC-cCCCCc
Confidence            4899999987   5543 4444566778999999999998764321         344688898876543333 346778


Q ss_pred             eEEEEECcCCCEEEEEEcc-CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           85 VHDVQWSYSGSEFAVVYGF-MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~-~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      +.+++|+|||+.|++.... ....|.+||+.+.....+  +...+..+.|||||++|++++..+.+..|++||+.+++..
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            9999999999999987432 122788889876655554  5567788999999999999874333468999999988765


Q ss_pred             EeeeCCCeeeEEEccCCCEEEEEEcCCceeecC---cEEEEeecCcee--EEeccCceEEEEEecCC
Q 020756          162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN---GIKIFHHNGSLF--FKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~---~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~  223 (321)
                      .......+..++|+|||++|++++.      ++   .|++||++|+.+  ...+...+.+++|+|..
T Consensus       349 ~l~~~~~~~~~~~spdg~~l~~~s~------~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          349 VLSSTFLDETPSLAPNGTMVIYSSS------QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             ECCCSSSCEEEEECTTSSEEEEEEE------ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             EecCCCCcCCeEEcCCCCEEEEEEc------CCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence            4433346788999999999999885      55   699999988766  33466789999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.84  E-value=4e-19  Score=178.74  Aligned_cols=205  Identities=12%  Similarity=0.096  Sum_probs=157.6

Q ss_pred             CCCceEEEEEcCCcCC--CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            2 GSPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~--~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      +.++.|+||++.....  +........+...+..+.|+|+|++|+... .           ...|.++++..........
T Consensus       402 s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs-~-----------Dg~v~vwd~~~~~~~~~~~  469 (694)
T 3dm0_A          402 SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS-W-----------DGELRLWDLAAGVSTRRFV  469 (694)
T ss_dssp             ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE-T-----------TSEEEEEETTTTEEEEEEE
T ss_pred             eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe-C-----------CCcEEEEECCCCcceeEEe
Confidence            4578999999987321  112334445667788999999999887642 1           1235666665554444445


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe------CCcCeeeEEEcCCC--CeEEEEccCCCCCcEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMA  151 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~------~~~~~~~~~~sPdG--~~l~~~g~~n~~g~i~  151 (321)
                      .|.+.|.+++|+|+|+.|+++  ..|+.|+|||..+.....+      |...+.++.|+|++  .+|++++   .|+.|+
T Consensus       470 ~h~~~v~~~~~s~~~~~l~s~--s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~d~~v~  544 (694)
T 3dm0_A          470 GHTKDVLSVAFSLDNRQIVSA--SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS---WDKTVK  544 (694)
T ss_dssp             CCSSCEEEEEECTTSSCEEEE--ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE---TTSCEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEE--eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe---CCCeEE
Confidence            789999999999999999885  6789999999976655444      45679999999997  5788888   899999


Q ss_pred             EEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe-ccCceEEEEEecCCCCCC
Q 020756          152 FWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~-~~~~~~~~~w~P~~~~~~  227 (321)
                      +||+.+++++..+..|  .+++++|||||++|++++.      |+.|+|||+ +++.++.. +...+..++|+|+...+.
T Consensus       545 vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  618 (694)
T 3dm0_A          545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK------DGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLC  618 (694)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------TSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEE
Confidence            9999999988888876  6889999999999999995      999999999 45555433 345789999999876555


Q ss_pred             CC
Q 020756          228 GD  229 (321)
Q Consensus       228 ~~  229 (321)
                      ..
T Consensus       619 ~~  620 (694)
T 3dm0_A          619 AA  620 (694)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.5e-18  Score=158.55  Aligned_cols=208  Identities=11%  Similarity=0.135  Sum_probs=158.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-------   74 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-------   74 (321)
                      +..+.|+||++.+   ++.+.... +......+.|+|+|+++++.... ..    ...|...+|.+.......       
T Consensus        93 ~~dg~i~iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~-~~----~~~g~i~~~d~~~~~~~~~~~~~~~  163 (369)
T 3zwl_B           93 SADYSIKLWDVSN---GQCVATWK-SPVPVKRVEFSPCGNYFLAILDN-VM----KNPGSINIYEIERDSATHELTKVSE  163 (369)
T ss_dssp             ETTTEEEEEETTT---CCEEEEEE-CSSCEEEEEECTTSSEEEEEECC-BT----TBCCEEEEEEEEECTTTCCEEEECS
T ss_pred             eCCCeEEEEECCC---CcEEEEee-cCCCeEEEEEccCCCEEEEecCC-cc----CCCCEEEEEEecCCccceeeccccc
Confidence            3578999999998   67776666 67788899999999998876421 00    011333344444332111       


Q ss_pred             --eeeecCCCC--CeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           75 --GLVPLRKEG--PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        75 --~~v~l~~~~--~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                        ......+.+  .+.+++|+|+|+.|++.  ..++.|.+||++.  ..+..+  +...+.++.|+|+|++|++++   .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~  238 (369)
T 3zwl_B          164 EPIHKIITHEGLDAATVAGWSTKGKYIIAG--HKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---R  238 (369)
T ss_dssp             SCSEEEECCTTCCCEEEEEECGGGCEEEEE--ETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---T
T ss_pred             ceeeeccCCcCccceeEEEEcCCCCEEEEE--cCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---C
Confidence              111112344  89999999999998884  6689999999975  455555  788999999999999999998   8


Q ss_pred             CCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecC--------------cEEEEeec-Ccee--EE
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDN--------------GIKIFHHN-GSLF--FK  208 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~--------------~v~iw~~~-g~~l--~~  208 (321)
                      ++.|.+||+.+++.+..+... .+..+.|+|+|+++++++.      ++              .+++||+. ++.+  ..
T Consensus       239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  312 (369)
T 3zwl_B          239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGG------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ  312 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC------CC-------------CEEEEEETTTCCEEEEEE
T ss_pred             CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeec------CCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence            999999999999888888765 7889999999999999985      44              79999984 4544  44


Q ss_pred             eccCceEEEEEecCCCCCCCC
Q 020756          209 KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       209 ~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .+...+..+.|+|+...+++.
T Consensus       313 ~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          313 GHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEE
T ss_pred             cccCcEEEEEECCCCCEEEEE
Confidence            577899999999998877765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.84  E-value=1.4e-19  Score=168.12  Aligned_cols=177  Identities=15%  Similarity=0.144  Sum_probs=135.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeee-c
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVP-L   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~-l   79 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|++++..+++....|         |  .+.+++...... ..+. .
T Consensus       158 s~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d---------g--~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          158 GKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED---------G--RILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTCSSCEEEEETT---------S--CEEECCTTSSSCBCBCCCT
T ss_pred             eCCCeEEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCceeeeeccC---------C--ceEEEECCCCceeeeeeec
Confidence            3578899999998   777877777777888999999998776654322         2  244555543321 2222 2


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEEC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~  155 (321)
                      .+...+.+++|+|++..++++ |..++.|.+||++. +.+..+  +...+++++|+|+| ++|++++   .|+.|+|||+
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs---~D~~i~iwd~  299 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFAC-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS---EDCTVAVLDA  299 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEE-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECT
T ss_pred             cccccccchhhhhcccceEEE-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe---CCCEEEEEEC
Confidence            356789999999986644433 56788999999954 455555  78899999999998 5788888   8999999999


Q ss_pred             CCCeEEEeeeCC-CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeec
Q 020756          156 VDGKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       156 ~~~~~i~~~~~~-~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++++++..+.+. .++.++||| ||++|++++.      |+.|+||++.
T Consensus       300 ~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~------Dg~v~iW~~~  342 (357)
T 4g56_B          300 DFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW------DHKVLHHHLP  342 (357)
T ss_dssp             TSCEEEEECCCSSCEEEEEECSSSTTEEEEEET------TSCEEEEECC
T ss_pred             CCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC------CCeEEEEECC
Confidence            999888776543 789999999 8999999994      9999999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.84  E-value=9.4e-19  Score=164.38  Aligned_cols=204  Identities=18%  Similarity=0.246  Sum_probs=157.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeeeecCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRK   81 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v~l~~   81 (321)
                      ..+.|+||++..   ++.+.....+......+.|+  ++.|+... .           ...+.+++.. ..........|
T Consensus       154 ~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~-----------dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          154 GNGLVDIYDVES---QTKLRTMAGHQARVGCLSWN--RHVLSSGS-R-----------SGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             TTSCEEEEETTT---CCEEEEECCCSSCEEEEEEE--TTEEEEEE-T-----------TSEEEEEETTSSSCEEEEEECC
T ss_pred             CCCeEEEEECcC---CeEEEEecCCCCceEEEEEC--CCEEEEEc-C-----------CCCEEEEecccCcceeeEEcCC
Confidence            468899999998   77787777778888899994  45555432 1           1235566665 22223333468


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .+.|.+++|+|+|+.|++.  ..++.|.+||++. ..+..+  |...+.++.|+|+|..+++++.+..++.|++||+.++
T Consensus       217 ~~~v~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASG--GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             CCCeeEEEEcCCCCEEEEE--eCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            8999999999999999884  6688999999964 455565  6788999999999987777664446899999999999


Q ss_pred             eEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee----EEeccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF----FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l----~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +++..+..+ .+..++|+|+|++|++++..    .|+.++||++... ..    ...|...+..+.|+|++..+++.
T Consensus       295 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~----~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~  367 (401)
T 4aez_A          295 ARVNTVDAGSQVTSLIWSPHSKEIMSTHGF----PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA  367 (401)
T ss_dssp             CEEEEEECSSCEEEEEECSSSSEEEEEECT----TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred             CEEEEEeCCCcEEEEEECCCCCeEEEEeec----CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence            988888765 78999999999999996521    3899999999653 22    33567789999999999888765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.83  E-value=9.6e-19  Score=162.53  Aligned_cols=197  Identities=16%  Similarity=0.276  Sum_probs=147.3

Q ss_pred             CCCceEEEEEcCCcCCCCc-----eeeeecc-----cCccceEEeC----CCCCe-eEEEEEecccCCCceeecceeEEE
Q 020756            2 GSPASVQIYACGKDLQSQP-----LARRSFF-----RCSTVQLNWN----RGSTG-LLAVAQSDVDKTNQSYYGESKLNY   66 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~-----i~~~~~f-----~~~~~~~~Ws----p~G~~-l~~~~~~d~d~t~~s~~g~~~l~~   66 (321)
                      +..+.|+||++..   ++.     +.....+     ......+.|+    |+|++ |++.. .+         |...+|.
T Consensus        88 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~d---------g~i~iwd  154 (397)
T 1sq9_A           88 SFSGDLLFYRITR---EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-VK---------GTTYIWK  154 (397)
T ss_dssp             ETTSCEEEEEEEE---CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-TT---------SCEEEEE
T ss_pred             cCCCCEEEEEccC---CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe-CC---------CcEEEEe
Confidence            3568899999998   555     6666666     4778899999    99999 65542 11         3333454


Q ss_pred             EEc------CCCcee-----eee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-----C-
Q 020756           67 LTT------DGTHEG-----LVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-----G-  122 (321)
Q Consensus        67 l~~------~g~~~~-----~v~------l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-----~-  122 (321)
                      +..      ... ..     .+.      ..+...|.+++|+|++ .|++  +..++.+.+||++. ..+..+     | 
T Consensus       155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          155 FHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT--GFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             EESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE--ECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             CCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE--EeCCCcEEEEECCCCceeEEEecccccc
Confidence            443      111 11     221      3468899999999999 6666  57789999999964 455544     3 


Q ss_pred             --CcCeeeEEEcCCCCeEEEEccCCCC---CcEEEEECCCCeEEEeeeC-------------C--CeeeEEEccCCCEEE
Q 020756          123 --SGPYNTVRWNPKGKFLCLAGFGNLP---GDMAFWDYVDGKQLGTTRA-------------E--CSVTSEWSPDGRYFM  182 (321)
Q Consensus       123 --~~~~~~~~~sPdG~~l~~~g~~n~~---g~i~iwD~~~~~~i~~~~~-------------~--~~~~~~wSpdG~~l~  182 (321)
                        ...+.++.|+|+|++|++++   .+   +.|.+||+.+++.+..+..             +  .+..++|+|+|++|+
T Consensus       231 ~~~~~i~~i~~~~~~~~l~~~~---~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          231 NNSNSIRSVKFSPQGSLLAIAH---DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             CCCCCEEEEEECSSTTEEEEEE---EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             ccCCccceEEECCCCCEEEEEe---cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence              77899999999999999998   77   9999999999988888875             4  788999999999999


Q ss_pred             EEEcCCceeecCcEEEEeec-Ccee--EE------ec---------------cCceEEEEEecCCC
Q 020756          183 TATTAPRLQIDNGIKIFHHN-GSLF--FK------KM---------------FDKLFQAEWKPVSP  224 (321)
Q Consensus       183 t~~s~~rl~~d~~v~iw~~~-g~~l--~~------~~---------------~~~~~~~~w~P~~~  224 (321)
                      +++.      |+.|+|||+. ++.+  +.      .+               ...+..+.|+|+..
T Consensus       308 ~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          308 SAGW------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             EEET------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             EEeC------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence            9994      9999999994 5555  33      33               67899999999973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.83  E-value=7.5e-19  Score=164.29  Aligned_cols=177  Identities=16%  Similarity=0.223  Sum_probs=132.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeee-----ecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ce
Q 020756            2 GSPASVQIYACGKDLQSQPLARR-----SFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HE   74 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~-----~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~   74 (321)
                      +..+.|+||++.+   ++.+...     ..+..+...+.|++ +++.++. .+.|         |.  +.+++.... ..
T Consensus       177 s~D~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-gs~D---------~~--v~~wd~~~~~~~  241 (380)
T 3iz6_a          177 SGDQTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLSINSLNANMFIS-GSCD---------TT--VRLWDLRITSRA  241 (380)
T ss_dssp             CTTSCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE-EETT---------SC--EEEEETTTTCCC
T ss_pred             CCCCcEEEEEcCC---CcEEEEeecccCCCCccCeEEEEeecCCCCEEEE-EECC---------Ce--EEEEECCCCCcc
Confidence            3578999999998   6665443     23456778899987 5555544 3221         22  455555422 22


Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEeC--C-------cCeeeEEEcCCCCeEEEEccC
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG--S-------GPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~--~-------~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      ......|.+.|.+++|+|+|++|++  +..|+.++|||++. ..+..+.  .       ..+.+++|+|+|++|++++  
T Consensus       242 ~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--  317 (380)
T 3iz6_a          242 VRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY--  317 (380)
T ss_dssp             CEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC--
T ss_pred             eEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE--
Confidence            2333458999999999999999988  47799999999965 4444441  1       2378999999999999998  


Q ss_pred             CCCCcEEEEECCCCeEEEee----eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          145 NLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i~~~----~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                       .+|.|++||+.+++.+..+    ..|  .+++++|||||++|++++.      |+.++||++.+.
T Consensus       318 -~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~------D~~i~iW~~~~~  376 (380)
T 3iz6_a          318 -SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW------DKNLKIWAFSGH  376 (380)
T ss_dssp             -TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT------TSCEEEEECCSS
T ss_pred             -CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC------CCCEEEEecCCC
Confidence             8999999999988877666    334  6889999999999999994      999999999764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.83  E-value=2.3e-18  Score=159.98  Aligned_cols=174  Identities=11%  Similarity=0.139  Sum_probs=136.4

Q ss_pred             CCceEEEEEcCCcCCCCceeeeec--ccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            3 SPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~--f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      ..+.|+||++..   ++.......  +...+..+.|+| ++++|+.. ..|         |  .+.+++..+.....+..
T Consensus        94 ~dg~i~iwd~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d---------~--~i~iwd~~~~~~~~~~~  158 (383)
T 3ei3_B           94 KGGDIILWDYDV---QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS-SIR---------G--ATTLRDFSGSVIQVFAK  158 (383)
T ss_dssp             BTSCEEEEETTS---TTCEEEECCCSTTCBEEEEEEETTEEEEEEEE-ETT---------T--EEEEEETTSCEEEEEEC
T ss_pred             CCCeEEEEeCCC---cccceeeecCCcCCceeEEEeCCCCCCEEEEE-eCC---------C--EEEEEECCCCceEEEec
Confidence            468899999998   555555543  667888999999 55666553 211         2  35666666543333322


Q ss_pred             C--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEE
Q 020756           80 R--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        80 ~--~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD  154 (321)
                      .  +...|.+++|+|+++.|++.  ..++.|.+||+++..+..+  |...+.++.|+|+|+ +|++++   .|+.|++||
T Consensus       159 ~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd  233 (383)
T 3ei3_B          159 TDSWDYWYCCVDVSVSRQMLATG--DSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS---VDATVKLWD  233 (383)
T ss_dssp             CCCSSCCEEEEEEETTTTEEEEE--ETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEE---TTSEEEEEE
T ss_pred             cCCCCCCeEEEEECCCCCEEEEE--CCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEe---CCCEEEEEe
Confidence            2  34789999999999998884  6789999999988887777  788999999999999 888888   899999999


Q ss_pred             CCC----CeEEEeeeCC-CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeec
Q 020756          155 YVD----GKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       155 ~~~----~~~i~~~~~~-~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +.+    +.++..+.+. .+..++|+| ||++|++++.      |+.++|||+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~------d~~i~iwd~~  281 (383)
T 3ei3_B          234 LRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ------RNEIRVYSSY  281 (383)
T ss_dssp             GGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES------SSEEEEEETT
T ss_pred             CCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC------CCcEEEEECC
Confidence            987    6677766543 789999999 9999999994      9999999984

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.83  E-value=1.4e-18  Score=162.92  Aligned_cols=206  Identities=9%  Similarity=0.151  Sum_probs=150.7

Q ss_pred             CCCceEEEEEcCCcC-CCCceeeeecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCC-------
Q 020756            2 GSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-------   72 (321)
Q Consensus         2 g~p~~v~v~~~~~~~-~~~~i~~~~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-------   72 (321)
                      +..+.|+||++.... ....+.....+...+..+.|+| +++.|+... .|         |.  +.+++....       
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s-~d---------g~--v~vw~~~~~~~~~~~~  121 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS-ED---------CT--VMVWEIPDGGLVLPLR  121 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE-TT---------SE--EEEEECCTTCCSSCBC
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe-CC---------Ce--EEEEEccCCCCccccC
Confidence            457899999997621 0123444445677889999999 777766542 11         33  444444332       


Q ss_pred             ceeeeecCCCCCeEEEEECcCC-CEEEEEEccCCCeEEEEeCC-CceeEEe----CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           73 HEGLVPLRKEGPVHDVQWSYSG-SEFAVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        73 ~~~~v~l~~~~~v~~~~wsP~g-~~l~~~~g~~~~~i~i~d~~-~~~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      ........|...|.+++|+|+| ..|++  +..++.|.+||+. +..+..+    |...+.++.|+|+|++|++++   .
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~  196 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLS--AGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC---R  196 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEE--EETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE---T
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEE--EcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe---c
Confidence            1122223588999999999998 46666  4668899999995 4456666    678899999999999999999   8


Q ss_pred             CCcEEEEECCCCeEEEee-eCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ce-e--EE-eccCceEEE
Q 020756          147 PGDMAFWDYVDGKQLGTT-RAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SL-F--FK-KMFDKLFQA  217 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~-~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~-l--~~-~~~~~~~~~  217 (321)
                      ++.|++||+++++.+..+ ..+   .+..+.|+|||++|+++.+..   .|+.++|||+.. .. +  .. .+...+..+
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT---CCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC---CCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            999999999999988887 454   378899999999999983100   389999999954 32 2  22 345679999


Q ss_pred             EEecCCCCCC
Q 020756          218 EWKPVSPDKF  227 (321)
Q Consensus       218 ~w~P~~~~~~  227 (321)
                      .|+|+...++
T Consensus       274 ~~s~~~~~l~  283 (402)
T 2aq5_A          274 FFDPDTNIVY  283 (402)
T ss_dssp             EEETTTTEEE
T ss_pred             EEcCCCCEEE
Confidence            9999998876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.83  E-value=1.3e-18  Score=163.25  Aligned_cols=210  Identities=12%  Similarity=0.128  Sum_probs=152.2

Q ss_pred             CCCceEEEEEcCCcCC----CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            2 GSPASVQIYACGKDLQ----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~----~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      +..+.|+||++.....    .+++.....+...+..+.|+|+|..+++.+..|         |  .+.+++.........
T Consensus       101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d---------g--~i~iwd~~~~~~~~~  169 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD---------N--VILVWDVGTGAAVLT  169 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT---------S--CEEEEETTTTEEEEE
T ss_pred             eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC---------C--EEEEEECCCCCccEE
Confidence            3578999999998310    056667777778889999999996555554321         2  256666655433222


Q ss_pred             e--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe---CCcC-eeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           78 P--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGP-YNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        78 ~--l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~---~~~~-~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      .  ..|.+.|.+++|+|+|+.|++.  ..++.|.+||++. ..+..+   |... +..+.|+|+|++|+++.....++.|
T Consensus       170 ~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i  247 (402)
T 2aq5_A          170 LGPDVHPDTIYSVDWSRDGALICTS--CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV  247 (402)
T ss_dssp             ECTTTCCSCEEEEEECTTSSCEEEE--ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE
T ss_pred             EecCCCCCceEEEEECCCCCEEEEE--ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE
Confidence            2  3588999999999999999985  6789999999964 455554   3343 7899999999999988222278999


Q ss_pred             EEEECCCCeE-E--EeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce--e--EEe--ccCceEEEEEe
Q 020756          151 AFWDYVDGKQ-L--GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--F--FKK--MFDKLFQAEWK  220 (321)
Q Consensus       151 ~iwD~~~~~~-i--~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~--l--~~~--~~~~~~~~~w~  220 (321)
                      .+||+++++. +  ..+... .+..++|+|||++|+++++     .|+.|+||++....  +  ...  +...+..+.|+
T Consensus       248 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~-----~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s  322 (402)
T 2aq5_A          248 ALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK-----GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM  322 (402)
T ss_dssp             EEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET-----TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC
T ss_pred             EEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc-----CCCeEEEEEecCCCcceEeecccccCCcccceEEe
Confidence            9999987643 2  222222 6888999999999987764     38999999996432  2  222  34789999999


Q ss_pred             cCCCCCCCC
Q 020756          221 PVSPDKFGD  229 (321)
Q Consensus       221 P~~~~~~~~  229 (321)
                      |+...++..
T Consensus       323 p~~~~~~s~  331 (402)
T 2aq5_A          323 PKRGLEVNK  331 (402)
T ss_dssp             CGGGSCGGG
T ss_pred             cccccceec
Confidence            998877754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.83  E-value=1.7e-18  Score=164.53  Aligned_cols=204  Identities=19%  Similarity=0.311  Sum_probs=148.2

Q ss_pred             CCCceEEEEEcCCc-------CCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce
Q 020756            2 GSPASVQIYACGKD-------LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE   74 (321)
Q Consensus         2 g~p~~v~v~~~~~~-------~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~   74 (321)
                      +..+.|+||++...       ....++.....+......+.|+|++..+++....+         |.  |.++++.....
T Consensus       148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---------g~--i~vwd~~~~~~  216 (430)
T 2xyi_A          148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD---------HT--ICLWDINATPK  216 (430)
T ss_dssp             CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT---------SC--EEEEETTSCCB
T ss_pred             CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC---------Ce--EEEEeCCCCCC
Confidence            45688999999861       11345666666778889999999999554443211         32  45555544111


Q ss_pred             -------eeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCc----eeEEe--CCcCeeeEEEcCCCC-eEE
Q 020756           75 -------GLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGK-FLC  139 (321)
Q Consensus        75 -------~~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~--~~~~~~~~~~sPdG~-~l~  139 (321)
                             ......|...|++++|+| ++..|+++  ..++.|.+||++..    .+..+  |...++++.|+|+|+ +|+
T Consensus       217 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~  294 (430)
T 2xyi_A          217 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV--ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA  294 (430)
T ss_dssp             GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE--ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             CCceeccceeecCCCCCEeeeEEeCCCCCEEEEE--eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEE
Confidence                   122235888999999999 55566664  56889999999643    44554  788999999999998 466


Q ss_pred             EEccCCCCCcEEEEECCC-CeEEEeeeCC--CeeeEEEccCCCE-EEEEEcCCceeecCcEEEEeecC------------
Q 020756          140 LAGFGNLPGDMAFWDYVD-GKQLGTTRAE--CSVTSEWSPDGRY-FMTATTAPRLQIDNGIKIFHHNG------------  203 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~-~~~i~~~~~~--~~~~~~wSpdG~~-l~t~~s~~rl~~d~~v~iw~~~g------------  203 (321)
                      +++   .+|.|.+||+++ ...+..+..|  .+++++|+|+|++ |++++      .|+.|+|||+..            
T Consensus       295 tg~---~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~  365 (430)
T 2xyi_A          295 TGS---ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSKIGEEQSTEDAED  365 (430)
T ss_dssp             EEE---TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred             EEe---CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe------CCCcEEEEeCCCCccccCcccccc
Confidence            777   889999999987 4566667655  7899999999965 66666      499999999964            


Q ss_pred             ---cee--EEeccCceEEEEEecCCCCCC
Q 020756          204 ---SLF--FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       204 ---~~l--~~~~~~~~~~~~w~P~~~~~~  227 (321)
                         +++  +..|...+.++.|+|+.+.++
T Consensus       366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l  394 (430)
T 2xyi_A          366 GPPELLFIHGGHTAKISDFSWNPNEPWII  394 (430)
T ss_dssp             CCTTEEEECCCCSSCEEEEEECSSSTTEE
T ss_pred             CCcceEEEcCCCCCCceEEEECCCCCCEE
Confidence               444  334667899999999988444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.83  E-value=2.9e-18  Score=161.06  Aligned_cols=202  Identities=13%  Similarity=0.186  Sum_probs=153.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      |..+.|+||++.+   ++.+..... .......+.|+|+|++|++...     .     |  .+.+++............
T Consensus       110 ~~d~~v~lw~~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----d-----g--~i~iwd~~~~~~~~~~~~  174 (401)
T 4aez_A          110 ALERNVYVWNADS---GSVSALAETDESTYVASVKWSHDGSFLSVGLG-----N-----G--LVDIYDVESQTKLRTMAG  174 (401)
T ss_dssp             EETTEEEEEETTT---CCEEEEEECCTTCCEEEEEECTTSSEEEEEET-----T-----S--CEEEEETTTCCEEEEECC
T ss_pred             ECCCeEEEeeCCC---CcEeEeeecCCCCCEEEEEECCCCCEEEEECC-----C-----C--eEEEEECcCCeEEEEecC
Confidence            3568999999988   566555554 4667889999999999877531     1     2  356666655433333346


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      |.+.|.+++|+  ++.|++  +..++.+.+||++  ...+..+  |...+.++.|+|+|++|++++   .++.|++||+.
T Consensus       175 ~~~~v~~~~~~--~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~  247 (401)
T 4aez_A          175 HQARVGCLSWN--RHVLSS--GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG---NDNVVQIWDAR  247 (401)
T ss_dssp             CSSCEEEEEEE--TTEEEE--EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETT
T ss_pred             CCCceEEEEEC--CCEEEE--EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe---CCCeEEEccCC
Confidence            88999999994  567776  4678999999996  3344444  788999999999999999999   89999999999


Q ss_pred             CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE-eccCceEEEEEecCCCCCCC
Q 020756          157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK-KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~-~~~~~~~~~~w~P~~~~~~~  228 (321)
                      +++.+..+..+  .+..++|+|+|..+++.++.   ..|+.+++||+. ++.+.. .+...+..+.|+|+...++.
T Consensus       248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g---s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG---TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             CSSEEEEECCCSSCCCEEEECTTSTTEEEEECC---TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred             CCCccEEecCCcceEEEEEECCCCCCEEEEecC---CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEE
Confidence            99888877665  78899999988666654320   028999999984 555533 35568999999999988876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.6e-19  Score=163.77  Aligned_cols=204  Identities=7%  Similarity=-0.001  Sum_probs=142.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~   80 (321)
                      |..+.|+||++.+   ++.+....  ......+.|+|+    ++..+  .|.+-..+.....+..++..... ...+...
T Consensus        55 ~~Dg~v~iwd~~~---~~~~~~~~--~~~v~~~~~~~~----~~s~s--~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           55 CEDGALHFTQLKD---SKTITTIT--TPNPRTGGEHPA----IISRG--PCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EETTEEEEEEESS---SSCEEEEE--EECCCTTCCCCS----EEEEC--STTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CCCCcEEEEECCC---CcEEEEEe--cCCceeeeeCCc----eEEec--CCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            3578999999998   66666555  344556778887    23222  22222222222233334443332 3344556


Q ss_pred             CCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeCCCcee-EEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           81 KEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKCRPI-LEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        81 ~~~~v~~~~wsP--~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      |.++|.+++|+|  ++++|+++  ..|+.+.+||++.... ..+   +...+.++.|+|+|++|++++   .+|.|++||
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~---~dg~i~iwd  198 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWA--DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS---PDGILDVYN  198 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEE--ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC---TTSCEEEEE
T ss_pred             CCCCEEEEEcCCCCCCCEEEEE--eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc---CCCEEEEEE
Confidence            778999999999  99999885  6789999999965433 333   345799999999999999998   899999999


Q ss_pred             CCCCeEE-EeeeC-C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEEe-----ccCce--EEEEEecC
Q 020756          155 YVDGKQL-GTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK-----MFDKL--FQAEWKPV  222 (321)
Q Consensus       155 ~~~~~~i-~~~~~-~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~~-----~~~~~--~~~~w~P~  222 (321)
                      +++++.+ ..+.. |  .++.++|+|+|.+|++++       ++.++|||+... .+...     +...+  ..++|+|+
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-------SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-------CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9998776 66665 4  789999999999999999       559999999543 22111     11223  35999999


Q ss_pred             CCCCCC
Q 020756          223 SPDKFG  228 (321)
Q Consensus       223 ~~~~~~  228 (321)
                      +..++.
T Consensus       272 g~~l~~  277 (343)
T 3lrv_A          272 GKNMIA  277 (343)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            988887

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.82  E-value=3.3e-19  Score=168.25  Aligned_cols=153  Identities=11%  Similarity=0.192  Sum_probs=114.9

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee--------ecCCCCCeEEEEECcCC-CEE
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--------PLRKEGPVHDVQWSYSG-SEF   97 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v--------~l~~~~~v~~~~wsP~g-~~l   97 (321)
                      +...+..+.|+|+|++|+..  .|         |  .+.+++.........        ...|.+.|.+++|+|+| +.|
T Consensus       176 h~~~v~~~~~~~~~~~l~s~--~d---------~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA--DD---------L--RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF  242 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE--CS---------S--EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred             CCcceEEEEEcCCCCEEEEe--CC---------C--eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence            45677899999999988763  11         2  244555542211111        12478899999999999 777


Q ss_pred             EEEEccCCCeEEEEeCCCce-----eEEe--CCc------------CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC-
Q 020756           98 AVVYGFMPASATIFNKKCRP-----ILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-  157 (321)
Q Consensus        98 ~~~~g~~~~~i~i~d~~~~~-----~~~~--~~~------------~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~-  157 (321)
                      ++  +..++.|.+||++...     +..+  +..            .+.++.|+|+|++|++++   . +.|++||+++ 
T Consensus       243 ~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~-~~v~iwd~~~~  316 (447)
T 3dw8_B          243 VY--SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---Y-LSVKVWDLNME  316 (447)
T ss_dssp             EE--EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---S-SEEEEEETTCC
T ss_pred             EE--EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---C-CeEEEEeCCCC
Confidence            77  4678999999996543     4555  333            899999999999999998   6 9999999987 


Q ss_pred             CeEEEeeeCCC-----------------eeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          158 GKQLGTTRAEC-----------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       158 ~~~i~~~~~~~-----------------~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      ++++..+..|.                 ++.++|+|||++|++++.      |+.|+|||+...
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~------dg~v~iwd~~~~  374 (447)
T 3dw8_B          317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY------NNFFRMFDRNTK  374 (447)
T ss_dssp             SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS------TTEEEEEETTTC
T ss_pred             ccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc------CCEEEEEEcCCC
Confidence            77777777662                 233899999999999984      999999999544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.5e-18  Score=159.26  Aligned_cols=203  Identities=17%  Similarity=0.287  Sum_probs=151.4

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCC--CCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeeee
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVP   78 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~--G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v~   78 (321)
                      ..+.|+||++.... .+.+.....+...+..+.|+++  |++|+... .|         |.  +.+++.....  .....
T Consensus        31 ~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d---------g~--v~iwd~~~~~~~~~~~~   97 (379)
T 3jrp_A           31 SDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-YD---------GK--VLIWKEENGRWSQIAVH   97 (379)
T ss_dssp             TTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TT---------SC--EEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-cC---------CE--EEEEEcCCCceeEeeee
Confidence            57899999998421 4555566666778889999987  77776642 11         33  3444444332  22333


Q ss_pred             cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcC-------------CCCeE
Q 020756           79 LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNP-------------KGKFL  138 (321)
Q Consensus        79 l~~~~~v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sP-------------dG~~l  138 (321)
                      ..|...|.+++|+|+  +..|++.  ..++.+.+||++..   ....+  +...+.++.|+|             ++++|
T Consensus        98 ~~~~~~v~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A           98 AVHSASVNSVQWAPHEYGPLLLVA--SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEE--ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred             cCCCcceEEEEeCCCCCCCEEEEe--cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence            347899999999999  8888885  66889999999543   22333  788999999999             69999


Q ss_pred             EEEccCCCCCcEEEEECCCCe----EEEeeeCC--CeeeEEEccC---CCEEEEEEcCCceeecCcEEEEeecCc-----
Q 020756          139 CLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPD---GRYFMTATTAPRLQIDNGIKIFHHNGS-----  204 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~----~i~~~~~~--~~~~~~wSpd---G~~l~t~~s~~rl~~d~~v~iw~~~g~-----  204 (321)
                      ++++   .++.|++||++++.    .+..+..|  .+.+++|+|+   |++|++++.      |+.++|||+...     
T Consensus       176 ~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~  246 (379)
T 3jrp_A          176 VTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCIIWTQDNEQGPWK  246 (379)
T ss_dssp             EEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------TSCEEEEEESSTTSCCE
T ss_pred             EEEe---CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC------CCEEEEEeCCCCCccce
Confidence            9999   89999999998653    44556555  7889999999   899999994      999999999643     


Q ss_pred             -eeEE--eccCceEEEEEecCCCCCCCC
Q 020756          205 -LFFK--KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 -~l~~--~~~~~~~~~~w~P~~~~~~~~  229 (321)
                       .+..  .+...+..+.|+|++..++..
T Consensus       247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~  274 (379)
T 3jrp_A          247 KTLLKEEKFPDVLWRASWSLSGNVLALS  274 (379)
T ss_dssp             EEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             eeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence             1121  256689999999999888764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.82  E-value=9.6e-19  Score=162.89  Aligned_cols=200  Identities=10%  Similarity=0.173  Sum_probs=152.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCc---------------cceEEeCCCCCeeEEEEEecccCCCceeecceeEEE
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCS---------------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY   66 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~---------------~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~   66 (321)
                      +..+.|++|++.+   ++.+.........               ...+.|++++. +++. .           ....++.
T Consensus       168 ~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-----------~~g~i~~  231 (425)
T 1r5m_A          168 DVENVTILWNVIS---GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP-G-----------PKGAIFV  231 (425)
T ss_dssp             ETTCCEEEEETTT---TEEEEEECCC---------------CCCBSCCEEEETTE-EEEE-C-----------GGGCEEE
T ss_pred             ecCCeEEEEECCC---CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE-c-----------CCCeEEE
Confidence            3568899999988   6777666665554               78899999865 3332 1           1123566


Q ss_pred             EEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756           67 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        67 l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      ++............|..+|.+++|+|+++.|++.  ..++.+.+||+.. ..+..+  +...+.++.|+|+| +|++++ 
T Consensus       232 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-  307 (425)
T 1r5m_A          232 YQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA--SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-  307 (425)
T ss_dssp             EETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE--ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-
T ss_pred             EEcCCCceeeeeccCCCceEEEEECCCCCEEEEE--cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-
Confidence            6665543333334578999999999999988885  6688999999854 455555  67899999999999 888888 


Q ss_pred             CCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cc----------------
Q 020756          144 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GS----------------  204 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~----------------  204 (321)
                        .++.|++||+.+++.+..+..+  .+..++|+|+|++|++++.      |+.|+||++. +.                
T Consensus       308 --~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  379 (425)
T 1r5m_A          308 --MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM------DGQVNVYDLKKLNSKSRSLYGNRDGILNP  379 (425)
T ss_dssp             --TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET------TSCEEEEECHHHHC--------------C
T ss_pred             --CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC------CCeEEEEECCCCccceeeeecccccccCc
Confidence              8899999999999988888765  7889999999999999994      8999999995 33                


Q ss_pred             ----ee--EEeccC--ceEEEEEecCCCCCCCC
Q 020756          205 ----LF--FKKMFD--KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 ----~l--~~~~~~--~~~~~~w~P~~~~~~~~  229 (321)
                          .+  +..+..  .+..+.|+|+...++..
T Consensus       380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  412 (425)
T 1r5m_A          380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA  412 (425)
T ss_dssp             EECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred             ccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence                34  334444  89999999998877643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.3e-18  Score=156.11  Aligned_cols=181  Identities=10%  Similarity=0.264  Sum_probs=131.7

Q ss_pred             CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eee--eecC-CCCCeEEEEECcCC
Q 020756           19 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGL--VPLR-KEGPVHDVQWSYSG   94 (321)
Q Consensus        19 ~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~--v~l~-~~~~v~~~~wsP~g   94 (321)
                      +.+.....+...+..+.|+++   +++..+.|         |.  +.+++..... ...  +... |.++|.+++|+|+|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D---------~~--i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~   70 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTD---------RK--IKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT   70 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT---EEEEEESS---------SC--EEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS
T ss_pred             ccceeeccCCCceeeeccCCC---EEEEEcCC---------CE--EEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC
Confidence            345555566777888999987   33433221         22  4444444321 111  2123 88999999999999


Q ss_pred             CEEEEEEccCCCeEEEEeCCC--------ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC----CeE
Q 020756           95 SEFAVVYGFMPASATIFNKKC--------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD----GKQ  160 (321)
Q Consensus        95 ~~l~~~~g~~~~~i~i~d~~~--------~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~----~~~  160 (321)
                      +.|++.  ..|+.|+|||+..        ..+..+  |...+.++.|+|+|++|++++   .|+.|++||+..    .++
T Consensus        71 ~~las~--s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s---~D~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           71 SLLAAG--SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS---RDKSVWIWETDESGEEYEC  145 (330)
T ss_dssp             SEEEEE--ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE---TTSCEEEEECCTTCCCCEE
T ss_pred             CEEEEE--eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEeccCCCCCeEE
Confidence            998884  6789999999842        234444  788999999999999999999   899999999942    256


Q ss_pred             EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc---ee--EEeccCceEEEEEecCCC
Q 020756          161 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS---LF--FKKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       161 i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~---~l--~~~~~~~~~~~~w~P~~~  224 (321)
                      +..+..|  .+..++|+|+|.+|++++.      |+.++||+....   .+  +..|...++.+.|+|+..
T Consensus       146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~------D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHPSEALLASSSY------DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEET------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred             EEEeccCCCceEEEEECCCCCEEEEEcC------CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence            7777766  7899999999999999994      999999998532   33  456788999999999843

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.82  E-value=6.9e-19  Score=160.45  Aligned_cols=202  Identities=16%  Similarity=0.216  Sum_probs=148.3

Q ss_pred             CCCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCC--CCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eee
Q 020756            2 GSPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGL   76 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~--G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~   76 (321)
                      +..+.|+||++.+   ++  .+....-+...+..+.|+++  |+.|+.. +.|         +.  +.+++..... ...
T Consensus        32 s~D~~v~lwd~~~---~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~-s~D---------~~--v~iWd~~~~~~~~~   96 (316)
T 3bg1_A           32 SSDRSVKIFDVRN---GGQILIADLRGHEGPVWQVAWAHPMYGNILASC-SYD---------RK--VIIWREENGTWEKS   96 (316)
T ss_dssp             ETTTEEEEEEEET---TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEE-ETT---------SC--EEEECCSSSCCCEE
T ss_pred             eCCCeEEEEEecC---CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEE-ECC---------CE--EEEEECCCCcceEE
Confidence            3578999999987   43  34455556778889999864  7766554 211         22  4444544321 122


Q ss_pred             ee-cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeCCCce-e---EEe--CCcCeeeEEEcCC-------------
Q 020756           77 VP-LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP-I---LEL--GSGPYNTVRWNPK-------------  134 (321)
Q Consensus        77 v~-l~~~~~v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~~~~-~---~~~--~~~~~~~~~~sPd-------------  134 (321)
                      .. ..|.+.|.+++|+|+  |..|++  +..|+.+.+||++... .   ..+  |...++++.|+|+             
T Consensus        97 ~~~~~h~~~V~~v~~~p~~~g~~las--gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  174 (316)
T 3bg1_A           97 HEHAGHDSSVNSVCWAPHDYGLILAC--GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ  174 (316)
T ss_dssp             EEECCCSSCCCEEEECCTTTCSCEEE--ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSC
T ss_pred             EEccCCCCceEEEEECCCCCCcEEEE--EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccccc
Confidence            22 358899999999998  667776  5779999999986542 1   222  6778999999998             


Q ss_pred             ----CCeEEEEccCCCCCcEEEEECCCC---eEEEeeeCC--CeeeEEEccCC----CEEEEEEcCCceeecCcEEEEee
Q 020756          135 ----GKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       135 ----G~~l~~~g~~n~~g~i~iwD~~~~---~~i~~~~~~--~~~~~~wSpdG----~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                          +++|++++   .|+.|++||++..   +++..+..|  .+..++|+|++    .+|++++.      |+.|+||++
T Consensus       175 ~~~~~~~l~sgs---~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~------D~~v~iw~~  245 (316)
T 3bg1_A          175 KPNYIKRFASGG---CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ------DGRVFIWTC  245 (316)
T ss_dssp             CCCCCCBEECCB---TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET------TCEEEEEEC
T ss_pred             CccccceEEEec---CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC------CCeEEEEEc
Confidence                47888888   8999999999754   466677766  68999999997    88999994      999999998


Q ss_pred             cC----c---eeEEeccCceEEEEEecCCCCCCCC
Q 020756          202 NG----S---LFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       202 ~g----~---~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ..    .   .+...+...++.++|+|++..+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence            54    1   2345567899999999999887754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.81  E-value=1.3e-18  Score=163.03  Aligned_cols=200  Identities=7%  Similarity=0.090  Sum_probs=147.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++..   ++.+.....+......+.|+|+|++|+... .           ...+.+++............|.
T Consensus       117 ~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~-----------d~~i~iwd~~~~~~~~~~~~h~  181 (420)
T 3vl1_A          117 TEGDIKVLDSNF---NLQREIDQAHVSEITKLKFFPSGEALISSS-Q-----------DMQLKIWSVKDGSNPRTLIGHR  181 (420)
T ss_dssp             TTSCEEEECTTS---CEEEEETTSSSSCEEEEEECTTSSEEEEEE-T-----------TSEEEEEETTTCCCCEEEECCS
T ss_pred             CCCCEEEEeCCC---cceeeecccccCccEEEEECCCCCEEEEEe-C-----------CCeEEEEeCCCCcCceEEcCCC
Confidence            568899999987   666665556778889999999999877642 1           1235666665443333333588


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEeC--------------------------CcCeeeEEEcCCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG--------------------------SGPYNTVRWNPKG  135 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~--------------------------~~~~~~~~~sPdG  135 (321)
                      +.|.+++|+|+|+.|++.  ..++.+.+||++. ..+..+.                          ...+.++.|+|+|
T Consensus       182 ~~v~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          182 ATVTDIAIIDRGRNVLSA--SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             SCEEEEEEETTTTEEEEE--ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             CcEEEEEEcCCCCEEEEE--cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            999999999999999974  6688999999964 4555552                          2445556778999


Q ss_pred             CeEEEEccCCCCCcEEEEECCCCeEEEeeeC-C--CeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeecC-ce-e--E
Q 020756          136 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNG-SL-F--F  207 (321)
Q Consensus       136 ~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~--~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~g-~~-l--~  207 (321)
                      ++|++++   .+|.|++||+.+++.+..+.. +  .+..++|+|+|+ +|++++.      |+.++|||+.. +. +  .
T Consensus       260 ~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~  330 (420)
T 3vl1_A          260 KYVIAGH---VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE------NGMLAQWDLRSPECPVGEF  330 (420)
T ss_dssp             EEEEEEE---TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET------TSEEEEEETTCTTSCSEEE
T ss_pred             CEEEEEc---CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC------CCeEEEEEcCCCcCchhhh
Confidence            9999998   899999999999887776654 3  688999999999 8999884      99999999953 33 2  3


Q ss_pred             Ee-ccCceEEEEEecCCCCCCCC
Q 020756          208 KK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       208 ~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .. +...+..+.| |++..+++.
T Consensus       331 ~~~~~~~v~~~~~-~~~~~l~s~  352 (420)
T 3vl1_A          331 LINEGTPINNVYF-AAGALFVSS  352 (420)
T ss_dssp             EESTTSCEEEEEE-ETTEEEEEE
T ss_pred             hccCCCCceEEEe-CCCCEEEEe
Confidence            33 4456777755 555555544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.81  E-value=2.2e-18  Score=157.35  Aligned_cols=191  Identities=14%  Similarity=0.176  Sum_probs=141.4

Q ss_pred             CCceeeeecccCccceEEeCCC---CCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCC
Q 020756           18 SQPLARRSFFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG   94 (321)
Q Consensus        18 ~~~i~~~~~f~~~~~~~~Wsp~---G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g   94 (321)
                      .+.+....-++..+..+.|+|+   |++|++.. .|         |...||.+...+.........|.++|.+++|+|++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~-~d---------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   98 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGS-WA---------NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG   98 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEE-TT---------SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEEC-CC---------CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC
Confidence            3455555566788999999999   57766642 11         33334444332332223333589999999999999


Q ss_pred             CEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEE--cCCCCeEEEEccCCCCCcEEEEECCCCeEEEe-------
Q 020756           95 SEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRW--NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-------  163 (321)
Q Consensus        95 ~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~--sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~-------  163 (321)
                      ++|+++  ..++.|.+||+.......+  |...+.++.|  +|+|++|++++   .++.|++||+++++.+..       
T Consensus        99 ~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~  173 (368)
T 3mmy_A           99 SKVFTA--SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS---WDKTLKFWDTRSSNPMMVLQLPERC  173 (368)
T ss_dssp             SEEEEE--ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEE---TTSEEEEECSSCSSCSEEEECSSCE
T ss_pred             CEEEEE--cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEcc---CCCcEEEEECCCCcEEEEEecCCCc
Confidence            999985  6689999999976544444  7889999999  99999999998   889999999876532111       


Q ss_pred             --------------------------------------------------------------------------------
Q 020756          164 --------------------------------------------------------------------------------  163 (321)
Q Consensus       164 --------------------------------------------------------------------------------  163 (321)
                                                                                                      
T Consensus       174 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          174 YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             EEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred             eEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence                                                                                            


Q ss_pred             ---eeCC--------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCC
Q 020756          164 ---TRAE--------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       164 ---~~~~--------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~  223 (321)
                         +..+              .++.++|+|||++|++++.      |+.|+|||+. ++++  +..+...+..++|+|++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  327 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS------DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG  327 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc------CCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence               1111              3778999999999999995      9999999996 4555  33466789999999999


Q ss_pred             CCCCCC
Q 020756          224 PDKFGD  229 (321)
Q Consensus       224 ~~~~~~  229 (321)
                      ..++..
T Consensus       328 ~~l~~~  333 (368)
T 3mmy_A          328 NIFAYA  333 (368)
T ss_dssp             SCEEEE
T ss_pred             CeEEEE
Confidence            888865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.9e-18  Score=160.95  Aligned_cols=175  Identities=13%  Similarity=0.148  Sum_probs=139.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|++|++..   ++.+.....+......+.|+|+|++|++.. .           ...+++++............|
T Consensus       224 ~~~g~i~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-----------d~~i~i~d~~~~~~~~~~~~~  288 (425)
T 1r5m_A          224 GPKGAIFVYQITE---KTPTGKLIGHHGPISVLEFNDTNKLLLSAS-D-----------DGTLRIWHGGNGNSQNCFYGH  288 (425)
T ss_dssp             CGGGCEEEEETTC---SSCSEEECCCSSCEEEEEEETTTTEEEEEE-T-----------TSCEEEECSSSBSCSEEECCC
T ss_pred             cCCCeEEEEEcCC---CceeeeeccCCCceEEEEECCCCCEEEEEc-C-----------CCEEEEEECCCCccceEecCC
Confidence            3467899999998   677777766777888999999999877642 1           112556665544223333357


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ...|.++.|+|++ .|++  +..++.+.+||++. ..+..+  +...+.++.|+|+|++|++++   .+|.|++||+.++
T Consensus       289 ~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~  362 (425)
T 1r5m_A          289 SQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF---MDGQVNVYDLKKL  362 (425)
T ss_dssp             SSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE---TTSCEEEEECHHH
T ss_pred             CccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE---CCCeEEEEECCCC
Confidence            8899999999999 6666  46689999999954 445444  678999999999999999998   8899999999988


Q ss_pred             e--------------------EEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          159 K--------------------QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       159 ~--------------------~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +                    .+..+..+    .++.++|+|||++|++++.      |+.++||++.|
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~g  425 (425)
T 1r5m_A          363 NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS------LQEGSVVAIPG  425 (425)
T ss_dssp             HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES------SSCCEEEECCC
T ss_pred             ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec------CceEEEEeecC
Confidence            7                    88888876    7889999999999999994      99999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.81  E-value=6.6e-18  Score=161.08  Aligned_cols=193  Identities=13%  Similarity=0.046  Sum_probs=146.6

Q ss_pred             CCceEEEEEcC--CcCCCCceeeee--cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--
Q 020756            3 SPASVQIYACG--KDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--   76 (321)
Q Consensus         3 ~p~~v~v~~~~--~~~~~~~i~~~~--~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--   76 (321)
                      ..+.|+||++.  .   ++.+....  .+......+.|+|+|++|++...            ...++.+++.......  
T Consensus       123 ~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------~g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          123 SDKSLLVFDVDKTS---KNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK------------FGDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             GGTEEEEEEECSSS---SSCEEEEEEEECSSCEEEEEECTTSSEEEEEET------------TSEEEEEETTSCCCSSCC
T ss_pred             CCCeEEEEECcCCC---CceeeeeecccCCCCceEEEEcCCCCEEEEEeC------------CCcEEEEecCCccccccc
Confidence            56899999998  6   56666554  34567789999999999877521            1235666654432221  


Q ss_pred             --eecCCCCCeEEEEECcC---CCEEEEEEccCCCeEEEEeCCC-ceeEE-e--CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           77 --VPLRKEGPVHDVQWSYS---GSEFAVVYGFMPASATIFNKKC-RPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        77 --v~l~~~~~v~~~~wsP~---g~~l~~~~g~~~~~i~i~d~~~-~~~~~-~--~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                        ....|.+.|++++|+|+   +++|++.  ..++.|.+||+.. ..+.. +  |...+.++.|+ +|++|++++   .|
T Consensus       188 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~---~d  261 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIKDSDGHQFIITS--DRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG---GD  261 (450)
T ss_dssp             CCCSEECSSCEEEEEEEECTTSCEEEEEE--ETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE---SS
T ss_pred             ceeeecccCceEEEEEcCCCCCCcEEEEE--cCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe---CC
Confidence              22347899999999999   8888774  6788999999964 45555 3  67899999999 999999999   89


Q ss_pred             CcEEEEECCCCeEEEeeeC---------------------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          148 GDMAFWDYVDGKQLGTTRA---------------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~---------------------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      +.|+|||+.+++++..+..                           ..+..+.|+|||++|++++.     .++.|+||+
T Consensus       262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----~d~~i~iw~  336 (450)
T 2vdu_B          262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE-----ATKCIIILE  336 (450)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET-----TCSEEEEEE
T ss_pred             CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC-----CCCeEEEEE
Confidence            9999999999988777652                           24678999999999999984     289999999


Q ss_pred             e--c-C---cee--EEeccCceEEEEEecC
Q 020756          201 H--N-G---SLF--FKKMFDKLFQAEWKPV  222 (321)
Q Consensus       201 ~--~-g---~~l--~~~~~~~~~~~~w~P~  222 (321)
                      +  . +   ..+  ...+ ..+.++.|+|+
T Consensus       337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          337 MSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             ECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             eccCCCCceeeccEeccC-CceEEEEecCC
Confidence            9  3 3   222  2223 78999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.81  E-value=6.7e-18  Score=160.21  Aligned_cols=208  Identities=12%  Similarity=0.024  Sum_probs=148.0

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      +.|+||++..    ..+....-.......+.|||+|++|++...   +.      +...|+++++.++....+ ..+.+.
T Consensus       159 ~~i~i~d~~g----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~---~~------~~~~i~~~d~~tg~~~~l-~~~~~~  224 (415)
T 2hqs_A          159 YELRVSDYDG----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTF---ES------GRSALVIQTLANGAVRQV-ASFPRH  224 (415)
T ss_dssp             EEEEEEETTS----CSCEEEEEESSCEEEEEECTTSSEEEEEEC---TT------SSCEEEEEETTTCCEEEE-ECCSSC
T ss_pred             ceEEEEcCCC----CCCEEEeCCCCcceeeEEcCCCCEEEEEEe---cC------CCcEEEEEECCCCcEEEe-ecCCCc
Confidence            7899999864    334444445667889999999999988642   11      234588888876544333 356788


Q ss_pred             eEEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           85 VHDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      +.+++|||||+.|++... .....|.+||+.+.....+  +...+..+.|+|||++|++++..+....|++||+.+++..
T Consensus       225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~  304 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ  304 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred             ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE
Confidence            999999999999986532 2234799999977666666  5667899999999999999873222237888999887643


Q ss_pred             Eee-eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-eccCceEEEEEecCCCCCCCC
Q 020756          162 GTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       162 ~~~-~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ... ....+..++|||||++|++++...   .+..+.+||+.+..+.. .....+..+.|+|++..++..
T Consensus       305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~---g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~  371 (415)
T 2hqs_A          305 RITWEGSQNQDADVSSDGKFMVMVSSNG---GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS  371 (415)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECS---SCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEE
T ss_pred             EEecCCCcccCeEECCCCCEEEEEECcC---CceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEE
Confidence            322 223677899999999999988410   12579999996544322 122378899999999877654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.81  E-value=1.5e-18  Score=163.78  Aligned_cols=138  Identities=9%  Similarity=0.148  Sum_probs=109.6

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEE--------e--CCcCeeeEEEcCCC-CeEEEEccCCC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILE--------L--GSGPYNTVRWNPKG-KFLCLAGFGNL  146 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~--------~--~~~~~~~~~~sPdG-~~l~~~g~~n~  146 (321)
                      ..|...|.+++|+|+|+.|++  + .|+.|.+||+. ......        +  |...+.++.|+|+| ++|++++   .
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~  247 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLS--A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS---S  247 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEE--E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE---T
T ss_pred             cCCCcceEEEEEcCCCCEEEE--e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe---C
Confidence            458899999999999999888  4 48999999997 332222        2  67789999999999 8999998   8


Q ss_pred             CCcEEEEECCCCeE----EEeeeCC--------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Ccee
Q 020756          147 PGDMAFWDYVDGKQ----LGTTRAE--------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF  206 (321)
Q Consensus       147 ~g~i~iwD~~~~~~----i~~~~~~--------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l  206 (321)
                      ++.|++||+++++.    +..+..+              .+..++|+|||++|++++       ++.++|||+.  ++.+
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~iwd~~~~~~~~  320 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------YLSVKVWDLNMENRPV  320 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-------SSEEEEEETTCCSSCS
T ss_pred             CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-------CCeEEEEeCCCCcccc
Confidence            99999999998875    5666654              688999999999999988       5899999995  4444


Q ss_pred             --EEeccC---------------ceEEEEEecCCCCCCCC
Q 020756          207 --FKKMFD---------------KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 --~~~~~~---------------~~~~~~w~P~~~~~~~~  229 (321)
                        +..+..               .+..++|+|++..+++.
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~  360 (447)
T 3dw8_B          321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG  360 (447)
T ss_dssp             CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE
T ss_pred             ceeeccccccccccccccccccccceEEEECCCCCEEEEe
Confidence              333321               13348999999888754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.81  E-value=2e-17  Score=153.62  Aligned_cols=203  Identities=10%  Similarity=0.087  Sum_probs=151.6

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++.+...... .....+.|+|+|++|++...           ....|++++.... +....+...
T Consensus        10 ~d~~v~v~d~~~---~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~-----------~d~~i~v~d~~~~-~~~~~~~~~   73 (391)
T 1l0q_A           10 ESDNISVIDVTS---NKVTATIPVG-SNPMGAVISPDGTKVYVANA-----------HSNDVSIIDTATN-NVIATVPAG   73 (391)
T ss_dssp             TTTEEEEEETTT---TEEEEEEECS-SSEEEEEECTTSSEEEEEEG-----------GGTEEEEEETTTT-EEEEEEECS
T ss_pred             CCCEEEEEECCC---CeEEEEeecC-CCcceEEECCCCCEEEEECC-----------CCCeEEEEECCCC-eEEEEEECC
Confidence            568999999988   6666655544 34678999999999877532           1224677777554 333334445


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..+.+++|+|+|++|+++ +..++.|.+||+... .+..+ +...+..+.|+|+|++|++++  ..++.|++||+.+++.
T Consensus        74 ~~v~~~~~spdg~~l~~~-~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVT-NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTVTKAV  150 (391)
T ss_dssp             SSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEE
T ss_pred             CCccceEECCCCCEEEEE-ECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEe--CCCCEEEEEECCCCcE
Confidence            599999999999988776 455789999999654 44444 556789999999999885544  1679999999999998


Q ss_pred             EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEE-eccCceEEEEEecCCCCCCCC
Q 020756          161 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK-KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       161 i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~-~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +..+..+ .+..++|+|||++|+.+..     .++.+++||+... .+.. .+...+..+.|+|+...++..
T Consensus       151 ~~~~~~~~~~~~~~~~~dg~~l~~~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          151 INTVSVGRSPKGIAVTPDGTKVYVANF-----DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EEEEECCSSEEEEEECTTSSEEEEEET-----TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEE
T ss_pred             EEEEecCCCcceEEECCCCCEEEEEeC-----CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEE
Confidence            8887765 7788999999999866554     3789999999544 3322 344578889999998777643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.81  E-value=4.5e-19  Score=164.00  Aligned_cols=184  Identities=10%  Similarity=0.135  Sum_probs=132.7

Q ss_pred             ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC
Q 020756           25 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM  104 (321)
Q Consensus        25 ~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~  104 (321)
                      .+++..+..+.|+|+|++|++..          ..|...||.+.............|.+.|.+++|+|+|++|+++  ..
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--s~   75 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTT----------ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTC--SQ   75 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCC----------SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEE--ET
T ss_pred             ecCCCcEEEEEECCCCCEEEEec----------CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEE--eC
Confidence            44556788999999999886631          1133345555422101222223588999999999999999885  66


Q ss_pred             CCeEEEEeCCCce----eEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe---EEEeeeC-C--CeeeE
Q 020756          105 PASATIFNKKCRP----ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK---QLGTTRA-E--CSVTS  172 (321)
Q Consensus       105 ~~~i~i~d~~~~~----~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~---~i~~~~~-~--~~~~~  172 (321)
                      |+.+.+||+....    ...+  |...+.++.|+|+|++|++++   .++.|++||+++++   .+..+.. |  .+.++
T Consensus        76 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            8899999996543    5555  788999999999999999999   89999999998876   3555654 4  78999


Q ss_pred             EEccCCCEEEEEEcCCceeecCcEEEEeec-------------------CceeEE-eccCceEEEEEecCCCCCCCC
Q 020756          173 EWSPDGRYFMTATTAPRLQIDNGIKIFHHN-------------------GSLFFK-KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       173 ~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-------------------g~~l~~-~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +|+|||++|++++.      |+.++|||+.                   ++++.. .|...+..+.|+|++..++..
T Consensus       153 ~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  223 (377)
T 3dwl_C          153 DWHPNNVLLAAGCA------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA  223 (377)
T ss_dssp             EECTTSSEEEEEES------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE
T ss_pred             EEcCCCCEEEEEeC------CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE
Confidence            99999999999994      9999999984                   333322 566789999999999877755

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.81  E-value=1.7e-17  Score=150.44  Aligned_cols=203  Identities=18%  Similarity=0.200  Sum_probs=155.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~   80 (321)
                      +..+.|++|+...   ................+.|++++..|+... .  |       +  .+.+++..+....... ..
T Consensus       105 ~~d~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~--d-------~--~~~~~d~~~~~~~~~~~~~  169 (340)
T 4aow_A          105 SWDGTLRLWDLTT---GTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-R--D-------K--TIKLWNTLGVCKYTVQDES  169 (340)
T ss_dssp             ETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEEE-T--T-------S--CEEEECTTSCEEEEECSSS
T ss_pred             cccccceEEeecc---cceeeeecCCCCceeEEEEeecCccceeec-C--C-------C--eEEEEEeCCCceEEEEecc
Confidence            3567899999988   566666666677788889999999887642 1  1       1  2444555444332222 34


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      |...+..++|++++...+++.+..++.+.+||++.. .+..+  |...++++.|+|+|++|++++   .|+.|.+||+.+
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~Dg~i~iwd~~~  246 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG---KDGQAMLWDLNE  246 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTCEEEEEETTT
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe---CCCeEEEEEecc
Confidence            788999999999877555444677899999999654 44555  788999999999999999999   899999999999


Q ss_pred             CeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-E-----------EeccCceEEEEEecCCC
Q 020756          158 GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-F-----------KKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       158 ~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~-----------~~~~~~~~~~~w~P~~~  224 (321)
                      .+++..+..+ .+..+.|+|++.+++.+.       |+.++|||+.+..+ .           ..+...|..++|+|++.
T Consensus       247 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  319 (340)
T 4aow_A          247 GKHLYTLDGGDIINALCFSPNRYWLCAAT-------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ  319 (340)
T ss_dssp             TEEEEEEECSSCEEEEEECSSSSEEEEEE-------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred             CceeeeecCCceEEeeecCCCCceeeccC-------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence            9999888876 788899999998776655       99999999976543 1           13556899999999998


Q ss_pred             CCCCC
Q 020756          225 DKFGD  229 (321)
Q Consensus       225 ~~~~~  229 (321)
                      .+++.
T Consensus       320 ~l~sg  324 (340)
T 4aow_A          320 TLFAG  324 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.80  E-value=2.3e-18  Score=159.98  Aligned_cols=203  Identities=9%  Similarity=0.068  Sum_probs=150.7

Q ss_pred             CCCceEEEEEcCCcCCCC------ceeeeecccCccceEEeCCC----C---CeeEEEEEecccCCCceeecceeEEEEE
Q 020756            2 GSPASVQIYACGKDLQSQ------PLARRSFFRCSTVQLNWNRG----S---TGLLAVAQSDVDKTNQSYYGESKLNYLT   68 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~------~i~~~~~f~~~~~~~~Wsp~----G---~~l~~~~~~d~d~t~~s~~g~~~l~~l~   68 (321)
                      +..+.|+||++..   ++      .+.....+...+..+.|+|+    |   ++|+... .         .|...+|.+.
T Consensus        33 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~-~---------dg~i~iw~~~   99 (397)
T 1sq9_A           33 SGDGYLKVWDNKL---LDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS-F---------SGDLLFYRIT   99 (397)
T ss_dssp             ETTSEEEEEESBC---CTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE-T---------TSCEEEEEEE
T ss_pred             cCCCEEEEEECCC---cccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc-C---------CCCEEEEEcc
Confidence            4578999999998   44      56666667778889999999    8   7776642 1         1333344443


Q ss_pred             cCCCce---eeeecCC-----CCCeEEEEEC----cCCCE-EEEEEccCCCeEEEEeCCC-------ceeE-----Ee--
Q 020756           69 TDGTHE---GLVPLRK-----EGPVHDVQWS----YSGSE-FAVVYGFMPASATIFNKKC-------RPIL-----EL--  121 (321)
Q Consensus        69 ~~g~~~---~~v~l~~-----~~~v~~~~ws----P~g~~-l~~~~g~~~~~i~i~d~~~-------~~~~-----~~--  121 (321)
                      ......   ......+     .+.|.+++|+    |+++. |+++  ..++.|.+||+..       ..+.     .+  
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  177 (397)
T 1sq9_A          100 REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT--DVKGTTYIWKFHPFADESNSLTLNWSPTLELQG  177 (397)
T ss_dssp             ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE--ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred             CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE--eCCCcEEEEeCCccccccccceeeccCcceeee
Confidence            322100   1122234     4899999999    99998 7774  6688999999865       3333     33  


Q ss_pred             -------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-------C-CeeeEEEccCCCEEEEEEc
Q 020756          122 -------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------E-CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       122 -------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-------~-~~~~~~wSpdG~~l~t~~s  186 (321)
                             +...+.++.|+|+| +|++++   .++.|.+||+++++.+..+..       . .+..++|+|+|++|++++.
T Consensus       178 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~  253 (397)
T 1sq9_A          178 TVESPMTPSQFATSVDISERG-LIATGF---NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD  253 (397)
T ss_dssp             EECCSSSSCCCCCEEEECTTS-EEEEEC---TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred             eeccccCCCCCceEEEECCCc-eEEEEe---CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence                   57789999999999 888888   889999999999998888775       3 6889999999999999994


Q ss_pred             CCceeec---CcEEEEee-cCcee--EEe-------------ccCceEEEEEecCCCCCCCC
Q 020756          187 APRLQID---NGIKIFHH-NGSLF--FKK-------------MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       187 ~~rl~~d---~~v~iw~~-~g~~l--~~~-------------~~~~~~~~~w~P~~~~~~~~  229 (321)
                            |   +.|+|||+ +++.+  +..             +...+..+.|+|+...++..
T Consensus       254 ------d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          254 ------SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             ------ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ------CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence                  8   89999998 45555  333             66789999999998877765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.80  E-value=2.6e-18  Score=159.54  Aligned_cols=186  Identities=13%  Similarity=0.159  Sum_probs=142.1

Q ss_pred             ceeeeecccCccceEEeCCCC-CeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeec-CCCCCeEEEEECc-CCC
Q 020756           20 PLARRSFFRCSTVQLNWNRGS-TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPL-RKEGPVHDVQWSY-SGS   95 (321)
Q Consensus        20 ~i~~~~~f~~~~~~~~Wsp~G-~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l-~~~~~v~~~~wsP-~g~   95 (321)
                      .+.....+...+..+.|+|+| ++|+.. ..|         |.  +.+++....... .+.. .|.+.|.+++|+| +++
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d---------g~--i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  132 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVG-SKG---------GD--IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN  132 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEE-EBT---------SC--EEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEE-cCC---------Ce--EEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC
Confidence            344455566788899999999 555543 221         22  555666544222 2222 4889999999999 667


Q ss_pred             EEEEEEccCCCeEEEEeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--C
Q 020756           96 EFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  168 (321)
Q Consensus        96 ~l~~~~g~~~~~i~i~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~  168 (321)
                      .|+++  ..++.|.+||+.+..+..+     +...+.++.|+|+|++|++++   .++.|++||+ +++.+..+..|  .
T Consensus       133 ~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~-~~~~~~~~~~h~~~  206 (383)
T 3ei3_B          133 QLFVS--SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD---STGRLLLLGL-DGHEIFKEKLHKAK  206 (383)
T ss_dssp             EEEEE--ETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE---TTSEEEEEET-TSCEEEEEECSSSC
T ss_pred             EEEEE--eCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC---CCCCEEEEEC-CCCEEEEeccCCCc
Confidence            77774  6689999999988776666     236699999999999999999   8999999999 56677777765  7


Q ss_pred             eeeEEEccCCC-EEEEEEcCCceeecCcEEEEeec-----Ccee-EEeccCceEEEEEec-CCCCCCCC
Q 020756          169 SVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-----GSLF-FKKMFDKLFQAEWKP-VSPDKFGD  229 (321)
Q Consensus       169 ~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~-----g~~l-~~~~~~~~~~~~w~P-~~~~~~~~  229 (321)
                      +..++|+|+|+ +|++++.      |+.++|||+.     +..+ ...+...+..+.|+| ++..++..
T Consensus       207 v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSV------DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             EEEEEECSSCTTEEEEEET------TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred             EEEEEECCCCCCEEEEEeC------CCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence            89999999999 8888884      9999999995     4444 335778999999999 88777754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.80  E-value=3.6e-18  Score=155.75  Aligned_cols=199  Identities=11%  Similarity=0.165  Sum_probs=145.8

Q ss_pred             CCceEEEEEcCCcCCCC-ceeeeecccCccceEE------eCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756            3 SPASVQIYACGKDLQSQ-PLARRSFFRCSTVQLN------WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG   75 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~-~i~~~~~f~~~~~~~~------Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~   75 (321)
                      ..+.|+||++..   ++ ++.....+......+.      |+++|+.|+... .|         |  .+.+++.......
T Consensus        88 ~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~-~d---------~--~i~vwd~~~~~~~  152 (357)
T 3i2n_A           88 FGGNLHIWNLEA---PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS-RD---------G--TVKVWDPRQKDDP  152 (357)
T ss_dssp             TTSCEEEECTTS---CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE-TT---------S--CEEEECTTSCSSC
T ss_pred             CCCeEEEEeCCC---CCccEEEEEecccceEEEeeccccccCCCccEEEEEe-CC---------C--eEEEEeCCCCCCc
Confidence            468899999998   45 6766666677777774      578999887642 11         2  2555555443212


Q ss_pred             eeec-CC----CCCeEEEE----ECcCCCEEEEEEccCCCeEEEEeCCCceeEE-e-CCcCeeeEEEcC---CCCeEEEE
Q 020756           76 LVPL-RK----EGPVHDVQ----WSYSGSEFAVVYGFMPASATIFNKKCRPILE-L-GSGPYNTVRWNP---KGKFLCLA  141 (321)
Q Consensus        76 ~v~l-~~----~~~v~~~~----wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~-~~~~~~~~~~sP---dG~~l~~~  141 (321)
                      ...+ .+    ...|.++.    |+|+++.|++.  ..++.+.+||++...... . +...+.++.|+|   ++++|+++
T Consensus       153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  230 (357)
T 3i2n_A          153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG--YDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT  230 (357)
T ss_dssp             SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE--ETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred             ceeccccCCCCCCceEEEEEEeccCCCCCEEEEE--ccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE
Confidence            2222 12    34889998    78999998884  668899999997654433 3 788999999999   99999999


Q ss_pred             ccCCCCCcEEEEECCCCeEEEeee-----CC--CeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeecC----------
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTTR-----AE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNG----------  203 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~~-----~~--~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~g----------  203 (321)
                      +   .+|.|++||+++++.+..+.     .+  .++.++|+|+|+ +|++++.      |+.++|||+..          
T Consensus       231 ~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          231 S---LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG------AGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             E---STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET------TSEEEEEEEECCSCC--CCTT
T ss_pred             C---CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC------CCcEEEeecCCCcccccccCC
Confidence            8   89999999998765443332     44  789999999999 7888884      99999999852          


Q ss_pred             ----------cee--EEeccCceEEEEEecCCCCCC
Q 020756          204 ----------SLF--FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       204 ----------~~l--~~~~~~~~~~~~w~P~~~~~~  227 (321)
                                ..+  ...|...+..+.|+|+...++
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             CCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence                      123  445677899999999998887

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.80  E-value=1.6e-17  Score=157.03  Aligned_cols=227  Identities=13%  Similarity=0.182  Sum_probs=161.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecc--cCccceEEeCCCCCeeEEEEEecc-----c-CCCcee---------------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDV-----D-KTNQSY---------------   58 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f--~~~~~~~~Wsp~G~~l~~~~~~d~-----d-~t~~s~---------------   58 (321)
                      |..+.|+||++.+   ++.+....+.  ...+..+.|+|+|++|++... |.     | .+++..               
T Consensus       122 gld~tV~lWd~~t---g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~-Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~  197 (420)
T 4gga_A          122 ALDNSVYLWSASS---GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQKRLRNMTSHSARVGSLSW  197 (420)
T ss_dssp             EETTEEEEEETTT---CCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EeCCEEEEEECCC---CCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC-CCeEEEEEcCCCcEEEEEeCCCCceEEEee
Confidence            5678999999998   6666555543  345789999999999877531 10     0 011100               


Q ss_pred             --------ecceeEEEEEcCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe--C
Q 020756           59 --------YGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL--G  122 (321)
Q Consensus        59 --------~g~~~l~~l~~~g~~~~-~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~--~  122 (321)
                              .....++.++....... .....|...+..+.|+|+|+++++.  ..|+.+.+||....     .+..+  +
T Consensus       198 ~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~--~~D~~v~i~~~~~~~~~~~~~~~~~~~  275 (420)
T 4gga_A          198 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG--GNDNLVNVWPSAPGEGGWVPLQTFTQH  275 (420)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSCEEEEESSCCSSCSCCSEEECCC
T ss_pred             CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee--eccccceEEeeccccccceeeeeeccc
Confidence                    00111222222222111 1123478899999999999999885  66889999998532     23333  6


Q ss_pred             CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ...+.++.|+|++..+++.+.+..|+.|+|||+.+++++..+..+ .+..+.|+|+++.|++++..    .|+.|+|||+
T Consensus       276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~----~d~~I~iwd~  351 (420)
T 4gga_A          276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF----AQNQLVIWKY  351 (420)
T ss_dssp             SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT----TTCCEEEEET
T ss_pred             CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEec----CCCEEEEEEC
Confidence            788999999998877766554557899999999999998888776 78889999999999988632    3899999999


Q ss_pred             -cCcee--EEeccCceEEEEEecCCCCCCCCc-chhhhccc
Q 020756          202 -NGSLF--FKKMFDKLFQAEWKPVSPDKFGDI-SELIKSVG  238 (321)
Q Consensus       202 -~g~~l--~~~~~~~~~~~~w~P~~~~~~~~~-~~~~~~~~  238 (321)
                       +++++  +.+|...|..++|+|++..+++.. |...+.|.
T Consensus       352 ~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          352 PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence             56666  556888999999999999888763 44444443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.9e-18  Score=169.25  Aligned_cols=200  Identities=11%  Similarity=0.121  Sum_probs=142.1

Q ss_pred             CCceEEEEEcCCcCCCCcee----eeecccCccceEEeCCC------CCeeEEEEEecccCCCceeecceeEEEEEcCCC
Q 020756            3 SPASVQIYACGKDLQSQPLA----RRSFFRCSTVQLNWNRG------STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT   72 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~----~~~~f~~~~~~~~Wsp~------G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~   72 (321)
                      .++.|+||++..   ++...    ........+..+.|+|+      |..|+. ++.|         |.  +.++++...
T Consensus       181 ~D~tI~iWd~~~---~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs-~s~D---------gt--vrlWd~~~~  245 (524)
T 2j04_B          181 HSSCIQIFKMNT---STLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSF-VSQE---------GT--INFLEIIDN  245 (524)
T ss_dssp             -CEEEEEEEEET---TTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEE-EETT---------SC--EEEEECCCC
T ss_pred             CCceEEEEEccC---CCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEE-EecC---------Ce--EEEEEcCCC
Confidence            578899999977   44322    12223456778999997      344443 3221         33  334444332


Q ss_pred             cee----------e-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeE--EeCCcCeeeE--EEcCCC
Q 020756           73 HEG----------L-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPIL--ELGSGPYNTV--RWNPKG  135 (321)
Q Consensus        73 ~~~----------~-v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~--~~~~~~~~~~--~~sPdG  135 (321)
                      ...          . ....|...|.+++|+|++ .|++  |..|++|.+||++.  .+..  ..|...|.++  .|+|+|
T Consensus       246 ~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las--gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g  322 (524)
T 2j04_B          246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC--GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE  322 (524)
T ss_dssp             SSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE--EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred             ccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE--EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence            110          1 112477899999999865 5665  67799999999964  2333  3488999999  689998


Q ss_pred             -CeEEEEccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--E
Q 020756          136 -KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--F  207 (321)
Q Consensus       136 -~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~  207 (321)
                       ++|++++   .|++|+|||+++++++..+..+    .+..++|||+|+.|++++.      |+.++|||+. +.++  +
T Consensus       323 ~~~laS~S---~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~------d~tv~lwd~~~~~~~~~l  393 (524)
T 2j04_B          323 DTVVSTVA---VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG------ASSLRAVPSRAAFAVHPL  393 (524)
T ss_dssp             CCEEEEEE---TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS------SSEEEEEETTCTTCCEEE
T ss_pred             CeEEEEec---cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC------CCcEEEEECcccccceee
Confidence             8999999   9999999999887655444332    4678999999999998884      8899999984 4433  5


Q ss_pred             EeccCceEEEEEecCCCCCCCC
Q 020756          208 KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       208 ~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ..|...|+.++|+|+++.+++.
T Consensus       394 ~gH~~~V~sva~Sp~g~~l~Sg  415 (524)
T 2j04_B          394 VSRETTITAIGVSRLHPMVLAG  415 (524)
T ss_dssp             EECSSCEEEEECCSSCCBCEEE
T ss_pred             ecCCCceEEEEeCCCCCeEEEE
Confidence            5788899999999999888765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.80  E-value=7.1e-18  Score=171.29  Aligned_cols=199  Identities=12%  Similarity=0.147  Sum_probs=157.4

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~   80 (321)
                      +..+.|+||++.+   ++.+.....+......+.|+|+|++|++.. .|         |  .+.+++.... ........
T Consensus        74 ~~dg~i~vw~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d---------g--~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           74 SDDFRIRVFNYNT---GEKVVDFEAHPDYIRSIAVHPTKPYVLSGS-DD---------L--TVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             ETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEEEE-TT---------S--EEEEEEGGGTSEEEEEEEC
T ss_pred             eCCCeEEEEECCC---CcEEEEEecCCCCEEEEEEeCCCCEEEEEc-CC---------C--EEEEEECCCCceEEEEEcC
Confidence            3578999999998   778887777788899999999999987642 11         2  2455555443 22333345


Q ss_pred             CCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC-ceeEEe--C-CcCeeeEEEcC--CCCeEEEEccCCCCCcEEEE
Q 020756           81 KEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL--G-SGPYNTVRWNP--KGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        81 ~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~-~~~~~~~~~sP--dG~~l~~~g~~n~~g~i~iw  153 (321)
                      |..+|.+++|+| ++..|++.  ..++.|.+||+.. .....+  + ...+..+.|+|  +|++|++++   .+|.|.+|
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~--~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~~~  213 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS---DDLTIKIW  213 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEE--ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC---TTSEEEEE
T ss_pred             CCCcEEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe---CCCEEEEE
Confidence            889999999999 78787774  6689999999853 344444  3 47899999999  999999998   89999999


Q ss_pred             ECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCC
Q 020756          154 DYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       154 D~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~  226 (321)
                      |+.+++.+..+..|  .+..++|+|+|++|++++.      |+.++|||+. ++.+  ...+...++.++|+|++..+
T Consensus       214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence            99999998888866  7889999999999999994      9999999995 4555  33455789999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.80  E-value=1.3e-17  Score=150.25  Aligned_cols=181  Identities=13%  Similarity=0.213  Sum_probs=131.5

Q ss_pred             CCCceEEEEEcCCcCCC-CceeeeecccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCC------
Q 020756            2 GSPASVQIYACGKDLQS-QPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------   72 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~-~~i~~~~~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~------   72 (321)
                      +..+.|+||++...... +.+.....+......+.|+|  +|++|+... .|         |...+|.+.....      
T Consensus        30 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~-~d---------g~v~vwd~~~~~~~~~~~~   99 (351)
T 3f3f_A           30 SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS-YD---------KTVKLWEEDPDQEECSGRR   99 (351)
T ss_dssp             ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE-TT---------SCEEEEEECTTSCTTSSCS
T ss_pred             eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc-CC---------CeEEEEecCCCcccccccC
Confidence            35789999999873100 23444455677889999999  577776642 11         3333444432211      


Q ss_pred             -ceeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeCCCce--------------------------------
Q 020756           73 -HEGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP--------------------------------  117 (321)
Q Consensus        73 -~~~~v~l~~~~~v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~~~~--------------------------------  117 (321)
                       ........|.+.|.+++|+|+  ++.|+++  ..++.+.+||++...                                
T Consensus       100 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (351)
T 3f3f_A          100 WNKLCTLNDSKGSLYSVKFAPAHLGLKLACL--GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP  177 (351)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEE--ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC
T ss_pred             cceeeeecccCCceeEEEEcCCCCCcEEEEe--cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc
Confidence             112222357899999999999  9988885  668899999974210                                


Q ss_pred             -----------------------------eEEe--CCcCeeeEEEcCCC----CeEEEEccCCCCCcEEEEECCCC----
Q 020756          118 -----------------------------ILEL--GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG----  158 (321)
Q Consensus       118 -----------------------------~~~~--~~~~~~~~~~sPdG----~~l~~~g~~n~~g~i~iwD~~~~----  158 (321)
                                                   +..+  |...+.++.|+|+|    ++|++++   .||.|++||+.++    
T Consensus       178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~  254 (351)
T 3f3f_A          178 SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC---KDGRIRIFKITEKLSPL  254 (351)
T ss_dssp             CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE---TTSCEEEEEEEECC---
T ss_pred             CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc---CCCeEEEEeCCCCcCcc
Confidence                                         2333  56789999999998    7899998   8999999999864    


Q ss_pred             ------------------------------------------eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecC
Q 020756          159 ------------------------------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN  194 (321)
Q Consensus       159 ------------------------------------------~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~  194 (321)
                                                                +.+..+..|  .++.++|+|||++|++++.      |+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg  328 (351)
T 3f3f_A          255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD------DG  328 (351)
T ss_dssp             ------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET------TS
T ss_pred             ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC------CC
Confidence                                                      566666665  7899999999999999995      99


Q ss_pred             cEEEEeecC
Q 020756          195 GIKIFHHNG  203 (321)
Q Consensus       195 ~v~iw~~~g  203 (321)
                      .|+||+++.
T Consensus       329 ~v~iw~~~~  337 (351)
T 3f3f_A          329 KVRLWKATY  337 (351)
T ss_dssp             CEEEEEECT
T ss_pred             cEEEEecCc
Confidence            999999953

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.79  E-value=5.5e-18  Score=172.08  Aligned_cols=201  Identities=11%  Similarity=0.082  Sum_probs=158.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++.+............+.|+|+|++|++...            ...+.+++............|.
T Consensus        33 ~~g~v~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------dg~i~vw~~~~~~~~~~~~~~~   97 (814)
T 3mkq_A           33 YSGRVEIWNYET---QVEVRSIQVTETPVRAGKFIARKNWIIVGSD------------DFRIRVFNYNTGEKVVDFEAHP   97 (814)
T ss_dssp             TTSEEEEEETTT---TEEEEEEECCSSCEEEEEEEGGGTEEEEEET------------TSEEEEEETTTCCEEEEEECCS
T ss_pred             CCCEEEEEECCC---CceEEEEecCCCcEEEEEEeCCCCEEEEEeC------------CCeEEEEECCCCcEEEEEecCC
Confidence            468999999998   7788888878888999999999999887531            1235666665443333333588


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      +.|.+++|+|+|+.|+++  ..++.+.+||+...  ....+  |...+.++.|+| +|++|++++   .+|.|.+||+.+
T Consensus        98 ~~v~~~~~s~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~vwd~~~  172 (814)
T 3mkq_A           98 DYIRSIAVHPTKPYVLSG--SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC---LDRTVKVWSLGQ  172 (814)
T ss_dssp             SCEEEEEECSSSSEEEEE--ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEETTC
T ss_pred             CCEEEEEEeCCCCEEEEE--cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe---CCCeEEEEECCC
Confidence            999999999999998874  66889999999653  33344  788999999999 899999998   899999999987


Q ss_pred             CeEEEeeeC---CCeeeEEEcc--CCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          158 GKQLGTTRA---ECSVTSEWSP--DGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       158 ~~~i~~~~~---~~~~~~~wSp--dG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++....+..   ..+..++|+|  +|.+|++++.      |+.+++||+. +..+  ...+...+..+.|+|+...++..
T Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  246 (814)
T 3mkq_A          173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG  246 (814)
T ss_dssp             SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT------TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred             CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            765555443   3688899999  9999999995      8999999985 4444  44567789999999998876654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2e-18  Score=168.42  Aligned_cols=191  Identities=16%  Similarity=0.193  Sum_probs=133.6

Q ss_pred             eeeecccCccceEEeCCCCCeeEEEEEecc----cCCCcee-ecceeEEEE--E---------cC-CCceeeeecCCCCC
Q 020756           22 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDV----DKTNQSY-YGESKLNYL--T---------TD-GTHEGLVPLRKEGP   84 (321)
Q Consensus        22 ~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~----d~t~~s~-~g~~~l~~l--~---------~~-g~~~~~v~l~~~~~   84 (321)
                      ..+.-|...+..+.|||||+.++.. +.|.    .+.++.. .....++.+  .         .. +.....+.+.++..
T Consensus         9 ~~~~~~~~~v~sv~~SpDG~~iASa-s~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~   87 (588)
T 2j04_A            9 VDRKEFEDWKNNLTWARDGTLYLTT-FPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY   87 (588)
T ss_dssp             ECSCCCSSSSCCEEECTTSCEEEEC-SSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred             ccHhHhhccEEEEEECCCCCEEEEE-cCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence            3455567889999999999998773 1110    0111100 011123333  1         11 12123344456889


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CCc-----CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSG-----PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~~-----~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      |.+++|||+|+.||++  ..++.+.|||..+ .+..+ |..     .+.+++|||||++|++++   .||+|+|||+.++
T Consensus        88 V~~vawSPdG~~LAs~--s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs---~DGtVkIWd~~~~  161 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVL--SNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGN---EDGELQFFSIRKN  161 (588)
T ss_dssp             EEEEEECSSSSCEEEE--ETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEE---TTSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEE--eCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEc---CCCEEEEEECCCC
Confidence            9999999999999996  6689999999755 44444 343     499999999999999999   9999999999887


Q ss_pred             e-------EEEee----eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee------E-EeccCceEEEE
Q 020756          159 K-------QLGTT----RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF------F-KKMFDKLFQAE  218 (321)
Q Consensus       159 ~-------~i~~~----~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l------~-~~~~~~~~~~~  218 (321)
                      .       .+.++    .+|  .+.+++|||||  |++++.      |+.+++|++.++.+      . ..|...|.+++
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~------D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS------NNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET------TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC------CCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            4       35555    333  78999999999  667664      99999999977653      2 35667899999


Q ss_pred             EecCCCCCCCC
Q 020756          219 WKPVSPDKFGD  229 (321)
Q Consensus       219 w~P~~~~~~~~  229 (321)
                      |+  +..+++.
T Consensus       234 Fs--g~~LASa  242 (588)
T 2j04_A          234 IV--DYKVVLT  242 (588)
T ss_dssp             EE--TTEEEEE
T ss_pred             EE--CCEEEEE
Confidence            99  4555544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.79  E-value=2.3e-18  Score=157.30  Aligned_cols=200  Identities=13%  Similarity=0.091  Sum_probs=152.4

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee--
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~--   78 (321)
                      +..+.|+||++.+   ++.+.....+......+.|+| +++.|+... .|         |  .|++++..........  
T Consensus        92 ~~dg~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~-~d---------g--~i~iwd~~~~~~~~~~~~  156 (366)
T 3k26_A           92 GSRGIIRIINPIT---MQCIKHYVGHGNAINELKFHPRDPNLLLSVS-KD---------H--ALRLWNIQTDTLVAIFGG  156 (366)
T ss_dssp             ETTCEEEEECTTT---CCEEEEEESCCSCEEEEEECSSCTTEEEEEE-TT---------S--CEEEEETTTTEEEEEECS
T ss_pred             cCCCEEEEEEchh---ceEeeeecCCCCcEEEEEECCCCCCEEEEEe-CC---------C--eEEEEEeecCeEEEEecc
Confidence            3568999999998   777877777788899999999 777776642 11         2  2566666554222222  


Q ss_pred             -cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce-e----------------------------EEe--CCcCe
Q 020756           79 -LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-I----------------------------LEL--GSGPY  126 (321)
Q Consensus        79 -l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~-~----------------------------~~~--~~~~~  126 (321)
                       ..|...|.+++|+|+|+.|++.  ..++.+.+||++... +                            ...  +...+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSC--GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEE--ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             cccccCceeEEEECCCCCEEEEe--cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence             3588999999999999999885  568899999986431 1                            111  67889


Q ss_pred             eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--------------EEEeeeCC--CeeeEEEccC--CCEEEEEEcCC
Q 020756          127 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------------QLGTTRAE--CSVTSEWSPD--GRYFMTATTAP  188 (321)
Q Consensus       127 ~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--------------~i~~~~~~--~~~~~~wSpd--G~~l~t~~s~~  188 (321)
                      .++.|+  |++|++++   .++.|.+||+.++.              .+..+..+  .+..++|+||  |++|++++.  
T Consensus       235 ~~~~~~--~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~--  307 (366)
T 3k26_A          235 DCVRWL--GDLILSKS---CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ--  307 (366)
T ss_dssp             CEEEEE--TTEEEEEC---SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT--
T ss_pred             EEEEEc--CCEEEEEe---cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec--
Confidence            999999  78999998   89999999988763              36666655  6888999999  999999984  


Q ss_pred             ceeecCcEEEEeecCc-----ee--EEec--cCceEEEEEecCCCCCCCC
Q 020756          189 RLQIDNGIKIFHHNGS-----LF--FKKM--FDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       189 rl~~d~~v~iw~~~g~-----~l--~~~~--~~~~~~~~w~P~~~~~~~~  229 (321)
                          |+.|+|||+...     .+  ...+  ...+..+.|+|++..+++.
T Consensus       308 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  353 (366)
T 3k26_A          308 ----VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAV  353 (366)
T ss_dssp             ----TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ----CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEE
Confidence                999999999643     22  3334  5789999999998877764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.4e-18  Score=158.23  Aligned_cols=204  Identities=18%  Similarity=0.309  Sum_probs=148.6

Q ss_pred             CCceEEEEEcCCcCC-CCceeeeecccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCCce-----e
Q 020756            3 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-----G   75 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~-~~~i~~~~~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-----~   75 (321)
                      ..+.|+||++..... .+.+.....+......+.|+|+ +++|+.. ..|         |  .+++++......     .
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d---------g--~v~iwd~~~~~~~~~~~~  154 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG-GNN---------G--EIFIWDMNKCTESPSNYT  154 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEE-CSS---------S--CEEBCBTTTTSSCTTTCC
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEE-cCC---------C--eEEEEECCCCcccccccc
Confidence            468999999987221 2356666667788889999999 5555443 211         2  255555544320     1


Q ss_pred             eee----cCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCCC-ceeEEe--C------CcCeeeEEEcCCC-CeEEE
Q 020756           76 LVP----LRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKKC-RPILEL--G------SGPYNTVRWNPKG-KFLCL  140 (321)
Q Consensus        76 ~v~----l~~~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~------~~~~~~~~~sPdG-~~l~~  140 (321)
                      .+.    ..|.+.|.+++|+|+ +..|++  +..++.|.+||++. ..+..+  +      ...+.++.|+|+| .+|++
T Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          155 PLTPGQSMSSVDEVISLAWNQSLAHVFAS--AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CBCCCCSCCSSCCCCEEEECSSCTTEEEE--ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             ccccccccCCCCCeeEEEeCCCCCcEEEE--EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence            111    247889999999999 566666  46789999999965 455555  3      6789999999998 57777


Q ss_pred             EccCCCCC---cEEEEECCCC-eEEEeee-CC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEe
Q 020756          141 AGFGNLPG---DMAFWDYVDG-KQLGTTR-AE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKK  209 (321)
Q Consensus       141 ~g~~n~~g---~i~iwD~~~~-~~i~~~~-~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~  209 (321)
                      ++   .++   .|++||++++ ..+..+. .|  .+..++|+| +|++|++++.      |+.++|||+. ++.+  +..
T Consensus       233 ~~---~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          233 AT---GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR------DNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EE---CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES------SSEEEEECSSSCCEEEEEEC
T ss_pred             EE---CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC------CCCEEEeeCCCCccceeecC
Confidence            77   666   9999999986 5666665 44  789999999 9999999994      9999999984 5555  445


Q ss_pred             ccCceEEEEEecCCC-CCCCC
Q 020756          210 MFDKLFQAEWKPVSP-DKFGD  229 (321)
Q Consensus       210 ~~~~~~~~~w~P~~~-~~~~~  229 (321)
                      |...+..+.|+|+.+ .+++.
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEEC
T ss_pred             CCCceEEEEECCCCCCEEEEE
Confidence            677899999999984 44443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.3e-17  Score=159.14  Aligned_cols=179  Identities=9%  Similarity=-0.055  Sum_probs=133.5

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CCCceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g~~~~~v~-l~~~~~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      .+..+.|+|+|++|+++...|         |...||.+.. .+.....+. ..+...|.+++|+|+|++|++.  ..++.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~~g~  172 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSD---------KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA--DKFGD  172 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGG---------TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE--ETTSE
T ss_pred             ceEEEEEcCCCCEEEEEECCC---------CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE--eCCCc
Confidence            467899999999986654221         4444555542 222222222 1467899999999999999885  56889


Q ss_pred             EEEEeCCCce-------eEEeCCcCeeeEEEcCC---CCeEEEEccCCCCCcEEEEECCCCeEEEe-eeCC--CeeeEEE
Q 020756          108 ATIFNKKCRP-------ILELGSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTSEW  174 (321)
Q Consensus       108 i~i~d~~~~~-------~~~~~~~~~~~~~~sPd---G~~l~~~g~~n~~g~i~iwD~~~~~~i~~-~~~~--~~~~~~w  174 (321)
                      +.+|++....       ...-|...+.++.|+|+   |++|++++   .|+.|++||+.+++++.. +..|  .+.+++|
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  249 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD---RDEHIKISHYPQCFIVDKWLFGHKHFVSSICC  249 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE---TTSCEEEEEESCTTCEEEECCCCSSCEEEEEE
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc---CCCcEEEEECCCCceeeeeecCCCCceEEEEE
Confidence            9999985332       22237889999999999   99999999   899999999998877766 3344  7899999


Q ss_pred             ccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEec---------------------------cCceEEEEEecCCCCC
Q 020756          175 SPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM---------------------------FDKLFQAEWKPVSPDK  226 (321)
Q Consensus       175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~---------------------------~~~~~~~~w~P~~~~~  226 (321)
                      + ||++|++++.      |+.|+|||+. |+++....                           ...+..+.|.|+...+
T Consensus       250 s-d~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          250 G-KDYLLLSAGG------DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             C-STTEEEEEES------SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             C-CCCEEEEEeC------CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9 9999999994      9999999984 55543321                           1357889999998877


Q ss_pred             CCC
Q 020756          227 FGD  229 (321)
Q Consensus       227 ~~~  229 (321)
                      +..
T Consensus       323 ~~~  325 (450)
T 2vdu_B          323 AFF  325 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.79  E-value=2.3e-17  Score=148.83  Aligned_cols=174  Identities=21%  Similarity=0.336  Sum_probs=129.7

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC--ceeeeecCCCCCeEEEEECcC--CCEEEEEEc
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYS--GSEFAVVYG  102 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~--~~~~v~l~~~~~v~~~~wsP~--g~~l~~~~g  102 (321)
                      +...+..+.|+|+|++|+... .  |       +.  +.+++..+.  ........|.++|.+++|+|+  |+.|+++  
T Consensus         8 h~~~V~~~~~s~~g~~las~s-~--D-------~~--v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~--   73 (297)
T 2pm7_B            8 HNEMIHDAVMDYYGKRMATCS-S--D-------KT--IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC--   73 (297)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE-T--T-------SC--EEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE--
T ss_pred             CcCceEEEEECCCCCEEEEEe-C--C-------CE--EEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE--
Confidence            455677899999999987652 1  1       33  444454432  112222358999999999864  8888884  


Q ss_pred             cCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcCC--CCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCC--Ceee
Q 020756          103 FMPASATIFNKKCR---PILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAE--CSVT  171 (321)
Q Consensus       103 ~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~--~~~~  171 (321)
                      ..|++|+|||+...   .+..+  |...++++.|+|+  |.+|++++   .|+.|++||+++..  ....+..|  .+..
T Consensus        74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s---~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEE---CCCcEEEEEecCCCceeeeeeecccCccce
Confidence            67899999999643   44444  7889999999998  89999999   89999999998652  12344444  6889


Q ss_pred             EEEccC-------------CCEEEEEEcCCceeecCcEEEEeecC-c----ee--EEeccCceEEEEEecCC
Q 020756          172 SEWSPD-------------GRYFMTATTAPRLQIDNGIKIFHHNG-S----LF--FKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       172 ~~wSpd-------------G~~l~t~~s~~rl~~d~~v~iw~~~g-~----~l--~~~~~~~~~~~~w~P~~  223 (321)
                      ++|+|+             +++|++++.      |+.|+|||+.. .    ++  +..|...|..++|+|+.
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~------D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGA------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             EEECCCC------------CCEEEEEET------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcC------CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence            999997             579999994      99999999953 3    22  44577899999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.78  E-value=1.5e-18  Score=165.05  Aligned_cols=199  Identities=15%  Similarity=0.148  Sum_probs=139.4

Q ss_pred             CCceEEEEEcCCcCCCCceeeee--cccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            3 SPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~--~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      ..|.|+||++..   ++......  .+...+..+.|+| +|++|+.. +.|         |.  |.++++.+.....+..
T Consensus       140 ~dg~i~lWd~~~---~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~-s~D---------~~--v~iwd~~~~~~~~~~~  204 (435)
T 4e54_B          140 KGGDIMLWNFGI---KDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS-SME---------GT--TRLQDFKGNILRVFAS  204 (435)
T ss_dssp             TTSCEEEECSSC---CSCCEEECCCSSSCCCCEEEECSSCTTEEEEE-CSS---------SC--EEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEECCC---CCceeEEEccCCCCCEEEEEEeCCCCCEEEEE-eCC---------CE--EEEeeccCCceeEEec
Confidence            578999999987   44333333  3567788999998 46665543 211         22  4555665543333322


Q ss_pred             C--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEE
Q 020756           80 R--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        80 ~--~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD  154 (321)
                      .  +...+.+++|+|+|+.|++  |..++.|.+||++++.+..+  |...++++.|+|++. +|++++   .|+.|+|||
T Consensus       205 ~~~~~~~~~~~~~~~~~~~l~~--g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s---~d~~v~iwd  279 (435)
T 4e54_B          205 SDTINIWFCSLDVSASSRMVVT--GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS---VDQTVKIWD  279 (435)
T ss_dssp             CSSCSCCCCCEEEETTTTEEEE--ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE---TTSBCCEEE
T ss_pred             cCCCCccEEEEEECCCCCEEEE--EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec---CcceeeEEe
Confidence            2  2346789999999999888  57889999999988877666  788999999999997 556677   889999999


Q ss_pred             CCCCeEEEee---eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE--ecc------CceEEEEEe
Q 020756          155 YVDGKQLGTT---RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMF------DKLFQAEWK  220 (321)
Q Consensus       155 ~~~~~~i~~~---~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~--~~~------~~~~~~~w~  220 (321)
                      +++.+....+   ..|  .++.++|||||++|++++.      |+.|+|||+. +.....  .+.      .......|+
T Consensus       280 ~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          280 LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ------KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             TTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES------SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             cccccccceEEEeeeccccccceeECCCCCeeEEEcC------CCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence            9876543322   223  7889999999999999994      9999999984 443321  111      123345677


Q ss_pred             cCCCCCC
Q 020756          221 PVSPDKF  227 (321)
Q Consensus       221 P~~~~~~  227 (321)
                      |....++
T Consensus       354 ~~~~~~~  360 (435)
T 4e54_B          354 PRYNLIV  360 (435)
T ss_dssp             SSSSCEE
T ss_pred             CCCCEEE
Confidence            7655443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=1.5e-17  Score=154.17  Aligned_cols=169  Identities=15%  Similarity=0.169  Sum_probs=127.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++++.... +......+.|++++  +++..             ...+++++..........+.. 
T Consensus        79 ~d~~v~iWd~~~---~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-------------~~~i~i~d~~~~~~~~~~~~~-  138 (355)
T 3vu4_A           79 VKEVVHIWDDVK---KQDVSRIK-VDAPVKDLFLSREF--IVVSY-------------GDVISVFKFGNPWKRITDDIR-  138 (355)
T ss_dssp             STTEEEEEETTT---TEEEEEEE-CSSCEEEEEECSSE--EEEEE-------------TTEEEEEESSTTCCBSSCCEE-
T ss_pred             CccEEEEEECCC---CcEEEEEE-CCCceEEEEEcCCE--EEEEE-------------cCEEEEEECCCCceeeEEecc-
Confidence            457999999998   77787776 45678889999864  33321             112555555443111111112 


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce-----------------eEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-----------------ILEL--GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~-----------------~~~~--~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                       +...+++++  ..+++..|..++.|.+||+....                 +..+  |...+.+++|+|+|++|++++ 
T Consensus       139 -~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-  214 (355)
T 3vu4_A          139 -FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-  214 (355)
T ss_dssp             -EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             -CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-
Confidence             455667777  67777667889999999997532                 4555  788999999999999999999 


Q ss_pred             CCCCCc-EEEEECCCCeEEEeee-C-C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          144 GNLPGD-MAFWDYVDGKQLGTTR-A-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       144 ~n~~g~-i~iwD~~~~~~i~~~~-~-~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                        .|++ |+|||+.+++++..+. + |  .+..++|||||++|++++.      |+.++|||+..
T Consensus       215 --~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~------d~~v~iw~~~~  271 (355)
T 3vu4_A          215 --QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD------KWTLHVFEIFN  271 (355)
T ss_dssp             --TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET------TCEEEEEESSC
T ss_pred             --CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC------CCEEEEEEccC
Confidence              9998 9999999999999887 3 4  7899999999999999994      99999999853

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.78  E-value=8.8e-17  Score=149.28  Aligned_cols=203  Identities=12%  Similarity=0.101  Sum_probs=150.8

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++.+....... ....+.|+|+|++|++...           ....|+.++..... ....+.+.
T Consensus        52 ~d~~i~v~d~~~---~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~-----------~~~~v~v~d~~~~~-~~~~~~~~  115 (391)
T 1l0q_A           52 HSNDVSIIDTAT---NNVIATVPAGS-SPQGVAVSPDGKQVYVTNM-----------ASSTLSVIDTTSNT-VAGTVKTG  115 (391)
T ss_dssp             GGTEEEEEETTT---TEEEEEEECSS-SEEEEEECTTSSEEEEEET-----------TTTEEEEEETTTTE-EEEEEECS
T ss_pred             CCCeEEEEECCC---CeEEEEEECCC-CccceEECCCCCEEEEEEC-----------CCCEEEEEECCCCe-EEEEEeCC
Confidence            457899999988   66666655443 7778999999999887531           11247777876653 33333455


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..+.+++|+|+|+.|+++ +..++.|.+||+... .+..+ ....+..+.|+|+|++|++++.  .++.|++||+.+++.
T Consensus       116 ~~~~~~~~s~dg~~l~~~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~  192 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVT-NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSV  192 (391)
T ss_dssp             SSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEE
T ss_pred             CCcceEEECCCCCEEEEE-eCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeE
Confidence            678999999999988665 456789999998654 44444 4556789999999999865541  568999999999988


Q ss_pred             EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEe-ccCceEEEEEecCCCCCC
Q 020756          161 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       161 i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~-~~~~~~~~~w~P~~~~~~  227 (321)
                      +..+..+ .+..++|+|||++|+++....   .++.+++||+. ++.+... ....+..+.|+|++..++
T Consensus       193 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  259 (391)
T 1l0q_A          193 IDTVKVEAAPSGIAVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY  259 (391)
T ss_dssp             EEEEECSSEEEEEEECTTSSEEEEEEECS---SCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred             EEEEecCCCccceEECCCCCEEEEEecCc---CCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEE
Confidence            8877765 677899999999999887310   27899999985 4444322 234678899999998775

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.4e-18  Score=159.57  Aligned_cols=179  Identities=19%  Similarity=0.306  Sum_probs=130.4

Q ss_pred             CCCceEEEEEcCCcCCC----Cc--eeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756            2 GSPASVQIYACGKDLQS----QP--LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG   75 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~----~~--i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~   75 (321)
                      +..+.|+||++......    ..  +............+.|+|+|..+++....+         |  .+.+++...... 
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g--~v~iwd~~~~~~-  200 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS---------N--FASIWDLKAKKE-  200 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS---------S--CEEEEETTTTEE-
T ss_pred             cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC---------C--CEEEEECCCCCc-
Confidence            45789999999883100    11  111233456788999999965555543211         2  255666655422 


Q ss_pred             eeecC-C------CCCeEEEEECcCCC-EEEEEEccCCC---eEEEEeCCC--ceeEEe---CCcCeeeEEEcC-CCCeE
Q 020756           76 LVPLR-K------EGPVHDVQWSYSGS-EFAVVYGFMPA---SATIFNKKC--RPILEL---GSGPYNTVRWNP-KGKFL  138 (321)
Q Consensus        76 ~v~l~-~------~~~v~~~~wsP~g~-~l~~~~g~~~~---~i~i~d~~~--~~~~~~---~~~~~~~~~~sP-dG~~l  138 (321)
                      ...+. +      ...|.+++|+|++. .|++.  ..++   .|.+||++.  ..+..+   |...+.++.|+| ++++|
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA--TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE--ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEE--ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence            22222 2      78999999999985 56654  4566   999999964  333333   577899999999 99999


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEeecC
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ++++   .++.|++||+.+++++..+..|  .+..++|+||| ++|++++.      |+.|+||++..
T Consensus       279 ~s~~---~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------d~~i~iw~~~~  337 (416)
T 2pm9_A          279 LSSG---RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF------DNKIEVQTLQN  337 (416)
T ss_dssp             EEEE---SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS------SSEEEEEESCC
T ss_pred             EEEe---CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec------CCcEEEEEccC
Confidence            9999   8999999999999999888776  68899999999 88888884      99999999854

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.78  E-value=3.4e-17  Score=147.55  Aligned_cols=183  Identities=14%  Similarity=0.214  Sum_probs=134.9

Q ss_pred             cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eee-eecCCCCCeEEEEECc--CCCEEEEEE
Q 020756           26 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGL-VPLRKEGPVHDVQWSY--SGSEFAVVY  101 (321)
Q Consensus        26 ~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~-v~l~~~~~v~~~~wsP--~g~~l~~~~  101 (321)
                      .++..+..+.|+|+|++|+... .         .|...+|.+...... ... ....|.++|.+++|+|  +++.|++. 
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~-~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~-   77 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCS-S---------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA-   77 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE-T---------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE-
T ss_pred             ccccceeEEEEcCCCCEEEEee-C---------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE-
Confidence            3467788999999999887652 1         133334444322211 111 1125889999999999  68888884 


Q ss_pred             ccCCCeEEEEeCCC----------ceeEEe--CCcCeeeEEEcCC--CCeEEEEccCCCCCcEEEEECCCCeE-------
Q 020756          102 GFMPASATIFNKKC----------RPILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFWDYVDGKQ-------  160 (321)
Q Consensus       102 g~~~~~i~i~d~~~----------~~~~~~--~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iwD~~~~~~-------  160 (321)
                       ..|+.|.+||+..          ..+..+  |...+.++.|+|+  +++|++++   .++.|++||+++++.       
T Consensus        78 -~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~  153 (351)
T 3f3f_A           78 -SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG---NDGILRLYDALEPSDLRSWTLT  153 (351)
T ss_dssp             -ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTCEEEEEECSSTTCTTCCEEE
T ss_pred             -cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec---CCCcEEEecCCChHHhcccccc
Confidence             6689999999864          335555  6889999999999  99999999   899999999865431       


Q ss_pred             -----------------------------------------------------EEeeeCC--CeeeEEEccCC----CEE
Q 020756          161 -----------------------------------------------------LGTTRAE--CSVTSEWSPDG----RYF  181 (321)
Q Consensus       161 -----------------------------------------------------i~~~~~~--~~~~~~wSpdG----~~l  181 (321)
                                                                           +..+..|  .++.++|+|+|    ++|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence                                                                 3333344  68889999998    889


Q ss_pred             EEEEcCCceeecCcEEEEeecC-----------------------------------------------cee--EEeccC
Q 020756          182 MTATTAPRLQIDNGIKIFHHNG-----------------------------------------------SLF--FKKMFD  212 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~~g-----------------------------------------------~~l--~~~~~~  212 (321)
                      ++++.      |+.|+|||+..                                               +.+  +..|..
T Consensus       234 ~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  307 (351)
T 3f3f_A          234 ATGCK------DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG  307 (351)
T ss_dssp             EEEET------TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred             EEEcC------CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence            99984      99999999954                                               223  334667


Q ss_pred             ceEEEEEecCCCCCCCC
Q 020756          213 KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       213 ~~~~~~w~P~~~~~~~~  229 (321)
                      .+..+.|+|+...+++.
T Consensus       308 ~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          308 EVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             CEEEEEECSSSCCEEEE
T ss_pred             cEEEEEEcCCCCEEEEe
Confidence            89999999998877765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.5e-17  Score=151.18  Aligned_cols=189  Identities=19%  Similarity=0.251  Sum_probs=138.8

Q ss_pred             ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcC--CCEE
Q 020756           20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS--GSEF   97 (321)
Q Consensus        20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~--g~~l   97 (321)
                      .+.....++..+..+.|+|+|++|++...          .|...+|.+.............|.++|.+++|+|+  +++|
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l   72 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSS----------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL   72 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEET----------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEEC----------CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEE
Confidence            44555667788999999999998876521          13333444432222122223358899999999987  8888


Q ss_pred             EEEEccCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcCC--CCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCC-
Q 020756           98 AVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAE-  167 (321)
Q Consensus        98 ~~~~g~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~-  167 (321)
                      +++  ..++.|.+||+...   .+..+  |...+.++.|+|+  |++|++++   .++.|.+||+.+..  ....+..+ 
T Consensus        73 ~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           73 ASC--SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             EEE--ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             EEe--ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec---CCCcEEEEecCCCCceeeEEecCCC
Confidence            885  66899999999654   44444  6789999999999  99999999   89999999998772  22333343 


Q ss_pred             -CeeeEEEcc-------------CCCEEEEEEcCCceeecCcEEEEeecC-c----ee--EEeccCceEEEEEecC---C
Q 020756          168 -CSVTSEWSP-------------DGRYFMTATTAPRLQIDNGIKIFHHNG-S----LF--FKKMFDKLFQAEWKPV---S  223 (321)
Q Consensus       168 -~~~~~~wSp-------------dG~~l~t~~s~~rl~~d~~v~iw~~~g-~----~l--~~~~~~~~~~~~w~P~---~  223 (321)
                       .+..++|+|             |+.+|++++.      |+.|+|||+.. .    .+  ...|...+..+.|+|+   .
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEET------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeC------CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence             789999999             7999999995      99999999953 2    11  3346778999999999   5


Q ss_pred             CCCCCC
Q 020756          224 PDKFGD  229 (321)
Q Consensus       224 ~~~~~~  229 (321)
                      ..+++.
T Consensus       222 ~~l~s~  227 (379)
T 3jrp_A          222 SYLASV  227 (379)
T ss_dssp             EEEEEE
T ss_pred             CeEEEE
Confidence            656544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.78  E-value=4.4e-18  Score=161.75  Aligned_cols=183  Identities=12%  Similarity=0.166  Sum_probs=134.3

Q ss_pred             eecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeee-cCCCCCeEEEEECc-CCCEEEEE
Q 020756           24 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVP-LRKEGPVHDVQWSY-SGSEFAVV  100 (321)
Q Consensus        24 ~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~-l~~~~~v~~~~wsP-~g~~l~~~  100 (321)
                      ..-|...+..+.|+|.+..+++..+.|         |.  |.+++..... ...+. ..|.++|.+++|+| +++.|+++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~d---------g~--i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~  183 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKG---------GD--IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS  183 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETT---------SC--EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCC---------CE--EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE
Confidence            334556688999999766555543221         33  4555554332 22333 35899999999999 67888874


Q ss_pred             EccCCCeEEEEeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEE
Q 020756          101 YGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE  173 (321)
Q Consensus       101 ~g~~~~~i~i~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~  173 (321)
                        ..|++|+|||+++.....+     +...+.++.|+|+|++|++++   .+|.|++||++. +.+..+..|  .+++++
T Consensus       184 --s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~---~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~  257 (435)
T 4e54_B          184 --SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD---NVGNVILLNMDG-KELWNLRMHKKKVTHVA  257 (435)
T ss_dssp             --CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC---SSSBEEEEESSS-CBCCCSBCCSSCEEEEE
T ss_pred             --eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe---CCCcEeeeccCc-ceeEEEecccceEEeee
Confidence              7789999999987766554     233567899999999999998   899999999964 455666665  789999


Q ss_pred             EccCCC-EEEEEEcCCceeecCcEEEEeecC-ce----e-EEeccCceEEEEEecCCCCCCCC
Q 020756          174 WSPDGR-YFMTATTAPRLQIDNGIKIFHHNG-SL----F-FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       174 wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~g-~~----l-~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      |+|++. +|++++      .|+.|+|||+.. +.    + ...|...|..++|+|++..+++.
T Consensus       258 ~~p~~~~~~~s~s------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          258 LNPCCDWFLATAS------VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             ECTTCSSEEEEEE------TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred             ecCCCceEEEEec------CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence            999987 455666      499999999843 21    1 34577789999999999888765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.77  E-value=3.1e-16  Score=142.05  Aligned_cols=203  Identities=12%  Similarity=0.071  Sum_probs=153.2

Q ss_pred             CCCceEEEEEcCCcCCC--CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            2 GSPASVQIYACGKDLQS--QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~--~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      |.++.|+||++......  .++.....+...+..+.|+|+|++|+... .           ...+..++...........
T Consensus        58 s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-~-----------d~~i~~~~~~~~~~~~~~~  125 (340)
T 4aow_A           58 SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-W-----------DGTLRLWDLTTGTTTRRFV  125 (340)
T ss_dssp             ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-T-----------TSEEEEEETTTTEEEEEEE
T ss_pred             cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-c-----------cccceEEeecccceeeeec
Confidence            46789999999873211  12333344567888999999999987652 1           1125566666655555555


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iw  153 (321)
                      .+...+..+.+++++..|++.  ..++.+.+||.........    +...+..+.|++++.  ++++++   .++.|++|
T Consensus       126 ~~~~~~~~~~~~~~~~~l~s~--s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~---~d~~i~i~  200 (340)
T 4aow_A          126 GHTKDVLSVAFSSDNRQIVSG--SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKVW  200 (340)
T ss_dssp             CCSSCEEEEEECTTSSCEEEE--ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE---TTSCEEEE
T ss_pred             CCCCceeEEEEeecCccceee--cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc---CCCEEEEE
Confidence            677889999999999998884  6688999999976544333    577889999998764  566777   78999999


Q ss_pred             ECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEE-eccCceEEEEEecCCCCCC
Q 020756          154 DYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK-KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       154 D~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~-~~~~~~~~~~w~P~~~~~~  227 (321)
                      |+.+++.+..+..|  .+++++|+|||++|++++.      |+.++|||+... .+.. .....+..+.|+|+...+.
T Consensus       201 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK------DGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC  272 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE
T ss_pred             ECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC------CCeEEEEEeccCceeeeecCCceEEeeecCCCCceee
Confidence            99999999888876  7889999999999999994      999999999644 4433 3456789999999764433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.77  E-value=9e-17  Score=151.85  Aligned_cols=179  Identities=16%  Similarity=0.219  Sum_probs=135.6

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce----eeee
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE----GLVP   78 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~----~~v~   78 (321)
                      ..+.+++|++...  ...+..........+.+.|+++|++++....   |       |  .+.+++......    ....
T Consensus       207 ~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~---D-------~--~v~i~~~~~~~~~~~~~~~~  272 (420)
T 4gga_A          207 RSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGGN---D-------N--LVNVWPSAPGEGGWVPLQTF  272 (420)
T ss_dssp             TTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEET---T-------S--CEEEEESSCCSSCSCCSEEE
T ss_pred             CCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeeeeec---c-------c--cceEEeeccccccceeeeee
Confidence            3567777777762  3455666667788889999999998877521   1       2  234444432211    1233


Q ss_pred             cCCCCCeEEEEECcCCCE-EEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           79 LRKEGPVHDVQWSYSGSE-FAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~-l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      ..+.+.|.+++|+|++.. +++..|..|+.|+|||+... .+..+ ....+.++.|+|+++.|++++ +..++.|+|||+
T Consensus       273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s-g~~d~~I~iwd~  351 (420)
T 4gga_A          273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-GFAQNQLVIWKY  351 (420)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEE-CTTTCCEEEEET
T ss_pred             cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEE-ecCCCEEEEEEC
Confidence            457899999999997764 45556778999999999654 45555 667889999999999998864 235799999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .+++++..+.+|  .|++++|||||++|++++.      |+.|+|||+.
T Consensus       352 ~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~------D~tvriWdv~  394 (420)
T 4gga_A          352 PTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWRCF  394 (420)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEECCS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEECC
Confidence            999999999887  7899999999999999994      9999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.77  E-value=4.2e-17  Score=173.40  Aligned_cols=204  Identities=8%  Similarity=0.152  Sum_probs=157.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |..+.|+||++.+   ++.+.....+...+..+.|+|+|++|++..            ....+.+++............|
T Consensus       634 ~~d~~i~vw~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------------~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          634 GADKTLQVFKAET---GEKLLDIKAHEDEVLCCAFSSDDSYIATCS------------ADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             ETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEEE------------TTSEEEEEETTTCCEEEEEECC
T ss_pred             eCCCeEEEEECCC---CCEEEEeccCCCCEEEEEEecCCCEEEEEe------------CCCeEEEEECCCCceEEEEcCC
Confidence            4568999999999   788888887888899999999999887752            1123666676554333333368


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .+.|.+++|+|+++..+++.+..++.+.+||+.. ..+..+  |...+.++.|+|+|++|++++   .+|.|.+||+.++
T Consensus       699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s---~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS---ADGTLRLWDVRSA  775 (1249)
T ss_dssp             SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE---SSSEEEEEEGGGT
T ss_pred             CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE---CCCeEEEEeCCCC
Confidence            8999999999976655555578899999999954 455555  788999999999999999999   8999999999877


Q ss_pred             eEEEeee-------------------------------------------------------CC--CeeeEEEccCCCEE
Q 020756          159 KQLGTTR-------------------------------------------------------AE--CSVTSEWSPDGRYF  181 (321)
Q Consensus       159 ~~i~~~~-------------------------------------------------------~~--~~~~~~wSpdG~~l  181 (321)
                      +....+.                                                       .+  .+..++|+|+|+++
T Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  855 (1249)
T 3sfz_A          776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA  855 (1249)
T ss_dssp             EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEE
T ss_pred             cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEE
Confidence            5443321                                                       11  56678888999988


Q ss_pred             EEEEcCCceeecCcEEEEeecCc-ee--EEeccCceEEEEEecCCCCCCCC
Q 020756          182 MTATTAPRLQIDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++++.      |+.+++|++... .+  ...|...+..+.|+|++..+++.
T Consensus       856 ~~~~~------dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~  900 (1249)
T 3sfz_A          856 VIALS------QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA  900 (1249)
T ss_dssp             EEECS------SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeC------CCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEE
Confidence            88884      889999999644 33  44677889999999998877765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.77  E-value=8.4e-18  Score=164.06  Aligned_cols=171  Identities=9%  Similarity=0.034  Sum_probs=127.7

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC-----CeEEEEECcCCCEEEEEEc
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG-----PVHDVQWSYSGSEFAVVYG  102 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~-----~v~~~~wsP~g~~l~~~~g  102 (321)
                      ...+..+.|||+|+.|++...          .|+  +.+++..+   ....+.|..     .|++++|||||+.|+++  
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~----------dg~--V~iwd~~~---~l~~l~~~~~~~~~sv~svafSPDG~~LAsg--  147 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSN----------NGN--VSVFKDNK---MLTNLDSKGNLSSRTYHCFEWNPIESSIVVG--  147 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEET----------TSC--EEEEETTE---EEEECCCSSCSTTTCEEEEEECSSSSCEEEE--
T ss_pred             CCcEEEEEECCCCCEEEEEeC----------CCc--EEEEeCCc---eeeeccCCCccccccEEEEEEcCCCCEEEEE--
Confidence            466889999999999998641          133  44444333   222223333     59999999999999995  


Q ss_pred             cCCCeEEEEeCCCce--------eEEe------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE---EEeee
Q 020756          103 FMPASATIFNKKCRP--------ILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ---LGTTR  165 (321)
Q Consensus       103 ~~~~~i~i~d~~~~~--------~~~~------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~---i~~~~  165 (321)
                      ..|++|.|||+..+.        +.++      |...|.+++|||||  |++++   .|+.|++||+.+++.   ..++.
T Consensus       148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEEEECCCSSSSCCCEEEEE
T ss_pred             cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEEEEECCCCccccceeeec
Confidence            779999999997653        3454      34589999999999  77777   789999999987763   23442


Q ss_pred             -CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EE-eccCceEEEEE--ecCCCCCCCC
Q 020756          166 -AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FK-KMFDKLFQAEW--KPVSPDKFGD  229 (321)
Q Consensus       166 -~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~-~~~~~~~~~~w--~P~~~~~~~~  229 (321)
                       +|  .+..++|+  |++||+++       ++.|+|||+.+..+  +. +|...++++.|  +|+...+..+
T Consensus       223 ~~h~~~V~svaFs--g~~LASa~-------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a  285 (588)
T 2j04_A          223 NASRRKITDLKIV--DYKVVLTC-------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMS  285 (588)
T ss_dssp             CCCSSCCCCEEEE--TTEEEEEC-------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred             ccccCcEEEEEEE--CCEEEEEe-------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence             34  68999999  78899887       78999999976554  33 67889999999  8887555544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.5e-17  Score=167.68  Aligned_cols=204  Identities=16%  Similarity=0.272  Sum_probs=153.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCC--CCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~--G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v   77 (321)
                      |..+.|+||++.... .+.+.....+...+..+.|+++  |++|+... .|         |.  +++++..+..  ....
T Consensus        28 ~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s-~D---------g~--I~vwd~~~~~~~~~~~   94 (753)
T 3jro_A           28 SSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-YD---------GK--VLIWKEENGRWSQIAV   94 (753)
T ss_dssp             ETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEE-TT---------SC--EEEEEEETTEEEEEEE
T ss_pred             ECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEe-CC---------Ce--EEEEECCCCccccccc
Confidence            357899999998521 4555566666778889999988  88776642 11         33  3444444432  2233


Q ss_pred             ecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcC-------------CCCe
Q 020756           78 PLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNP-------------KGKF  137 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sP-------------dG~~  137 (321)
                      ...|.++|.+++|+|+  |+.|++.  ..++.|.+||++..   ....+  |...+.++.|+|             +|++
T Consensus        95 ~~~h~~~V~~v~~sp~~~~~~l~sg--s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~  172 (753)
T 3jro_A           95 HAVHSASVNSVQWAPHEYGPLLLVA--SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (753)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEE--ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred             ccCCCCCeEEEEECCCCCCCEEEEE--eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence            3458899999999999  8888884  67899999999644   23333  788999999999             5999


Q ss_pred             EEEEccCCCCCcEEEEECCCC----eEEEeeeCC--CeeeEEEccC---CCEEEEEEcCCceeecCcEEEEeecCc----
Q 020756          138 LCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---GRYFMTATTAPRLQIDNGIKIFHHNGS----  204 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~----~~i~~~~~~--~~~~~~wSpd---G~~l~t~~s~~rl~~d~~v~iw~~~g~----  204 (321)
                      |++++   .+|.|++||++++    ..+..+..|  .+++++|+|+   |++|++++.      |+.++|||+...    
T Consensus       173 l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~------Dg~I~iwd~~~~~~~~  243 (753)
T 3jro_A          173 FVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------DRTCIIWTQDNEQGPW  243 (753)
T ss_dssp             EEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES------SSCEEEEEESSSSSCC
T ss_pred             EEEEE---CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec------CCEEEEecCCCCCCcc
Confidence            99999   8999999999876    556666665  7899999999   999999994      999999999653    


Q ss_pred             --ee--EEeccCceEEEEEecCCCCCCCC
Q 020756          205 --LF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 --~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                        .+  ...+...++.+.|+|++..+++.
T Consensus       244 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          244 KKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             BCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             eeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence              22  22356689999999999887764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=1.1e-16  Score=141.17  Aligned_cols=204  Identities=16%  Similarity=0.123  Sum_probs=142.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC-CceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g-~~~~~v~l~   80 (321)
                      +..+.|.+|++.+   ++.. ...........+.|+|+|++|++..             ...|++++..+ .....+...
T Consensus        19 ~~~~~i~~~d~~~---~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-------------~~~i~~~d~~~~~~~~~~~~~   81 (297)
T 2ojh_A           19 SMRSSIEIFNIRT---RKMR-VVWQTPELFEAPNWSPDGKYLLLNS-------------EGLLYRLSLAGDPSPEKVDTG   81 (297)
T ss_dssp             CCCEEEEEEETTT---TEEE-EEEEESSCCEEEEECTTSSEEEEEE-------------TTEEEEEESSSCCSCEECCCT
T ss_pred             CcceeEEEEeCCC---Ccee-eeccCCcceEeeEECCCCCEEEEEc-------------CCeEEEEeCCCCCCceEeccc
Confidence            4568899999987   4443 3333466788999999999988741             22478888776 533333323


Q ss_pred             C-CCCeEEEEECcCCCEEEEEEccC--CCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC-
Q 020756           81 K-EGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY-  155 (321)
Q Consensus        81 ~-~~~v~~~~wsP~g~~l~~~~g~~--~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~-  155 (321)
                      + ...+.+++|+|+|+.|+++....  ...|.+++..+.....+ ....+..+.|+|+|++|++++.  .++.+.||++ 
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~  159 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMD  159 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEE--ETTEEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEEC--CCCceEEEEEE
Confidence            3 46789999999999999975333  34666667666555555 4456888999999999885441  5677888874 


Q ss_pred             -CCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--CceeE--EeccCceEEEEEecCCCCCCCC
Q 020756          156 -VDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFF--KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       156 -~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l~--~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                       .+++........ .+..+.|+|||++|++++.     .++.++||+++  +..+.  ..+...+..+.|+|++..++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          160 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS-----RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             TTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCcceEcccCCCccccceECCCCCEEEEEec-----CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence             445443333332 6888999999999998874     27788999874  44442  2334567889999998877644

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.76  E-value=1.8e-16  Score=144.41  Aligned_cols=200  Identities=11%  Similarity=0.117  Sum_probs=147.1

Q ss_pred             CceEEEEEcCCcCCCCceeeee-cccCccceEEeCCC---CCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeee
Q 020756            4 PASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVP   78 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~-~f~~~~~~~~Wsp~---G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~   78 (321)
                      .+.|+||++..   ++...... -+......+.|+|+   |++|++.. .+         |  .+.+++..... .....
T Consensus        43 d~~v~iw~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-~d---------g--~i~iwd~~~~~~~~~~~  107 (357)
T 3i2n_A           43 TGVIQLYEIQH---GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD-FG---------G--NLHIWNLEAPEMPVYSV  107 (357)
T ss_dssp             CEEEEEEEECS---SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE-TT---------S--CEEEECTTSCSSCSEEE
T ss_pred             CcEEEEEeCCC---CcccceeeecccCcEEEEEEcCCCCCCceEEEec-CC---------C--eEEEEeCCCCCccEEEE
Confidence            78999999998   55543333 34667889999999   57776642 11         2  25566665443 22233


Q ss_pred             cCCCCCeEEEE------ECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CC----cCeeeEE----EcCCCCeEEE
Q 020756           79 LRKEGPVHDVQ------WSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--GS----GPYNTVR----WNPKGKFLCL  140 (321)
Q Consensus        79 l~~~~~v~~~~------wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~----~~~~~~~----~sPdG~~l~~  140 (321)
                      ..|.+.|.++.      |+|+++.|++.  ..++.+.+||+...  .+..+  +.    ..+.++.    |+|++++|++
T Consensus       108 ~~~~~~v~~~~~~~~~~~s~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~  185 (357)
T 3i2n_A          108 KGHKEIINAIDGIGGLGIGEGAPEIVTG--SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA  185 (357)
T ss_dssp             CCCSSCEEEEEEESGGGCC-CCCEEEEE--ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred             EecccceEEEeeccccccCCCccEEEEE--eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence            35889999995      57899998884  66889999999643  45555  22    3677887    7899999999


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEcc---CCCEEEEEEcCCceeecCcEEEEeecCce-e--E-----E
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIFHHNGSL-F--F-----K  208 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSp---dG~~l~t~~s~~rl~~d~~v~iw~~~g~~-l--~-----~  208 (321)
                      ++   .++.|++||+++++.+...... .+..++|+|   ++.+|++++.      |+.++|||+.... +  .     .
T Consensus       186 ~~---~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~  256 (357)
T 3i2n_A          186 GY---DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSL------EGKFHVFDMRTQHPTKGFASVSEK  256 (357)
T ss_dssp             EE---TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEES------TTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             Ec---cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECC------CCeEEEEeCcCCCcccceeeeccC
Confidence            98   8899999999999876665543 889999999   9999999984      9999999985332 1  2     2


Q ss_pred             eccCceEEEEEecCCC-CCCCC
Q 020756          209 KMFDKLFQAEWKPVSP-DKFGD  229 (321)
Q Consensus       209 ~~~~~~~~~~w~P~~~-~~~~~  229 (321)
                      .+...+..+.|+|+.. .+++.
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCcCCEEEEEECCCCCcEEEEE
Confidence            6778999999999987 45543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.6e-16  Score=140.68  Aligned_cols=194  Identities=13%  Similarity=0.121  Sum_probs=144.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|++|++......+++.....+......+.|  +++.+++.. .+         |  .+.+++ .+. .......|
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~-~d---------~--~i~~~d-~~~-~~~~~~~~  141 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGS-WD---------K--TAKVWK-EGS-LVYNLQAH  141 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEE-TT---------S--EEEEEE-TTE-EEEEEECC
T ss_pred             cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEe-CC---------C--CEEEEc-CCc-EEEecccC
Confidence            35678999999874334556666667778888889  566665542 11         2  244555 332 22233357


Q ss_pred             CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           82 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        82 ~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ..+|.++.|+| +++.|++.  ..++.+.+||.. ..+..+   +...+.++.|+|+|. |++++   .++.|++||+++
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~--~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~---~dg~i~i~d~~~  214 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTA--SADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-FISCS---NDGLIKLVDMHT  214 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEE--ETTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-EEEEE---TTSEEEEEETTT
T ss_pred             CCceeEEEEccCCCCEEEEE--ECCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-EEEcc---CCCeEEEEECCc
Confidence            89999999998 88888874  668899999953 334333   678899999999999 77777   889999999999


Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCC
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~  225 (321)
                      ++.+..+..|  .++.++|+|+| .|++++.      |+.++|||+ +++++  ...+...+..+.|+|+...
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  280 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGE------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI  280 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTS-CEEEEET------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred             hhhhhhhhcCCceEEEEEEecCC-CEEEEec------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE
Confidence            9999888766  78999999999 5777774      999999998 45554  4456678999999999873

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.76  E-value=8.2e-18  Score=153.65  Aligned_cols=198  Identities=9%  Similarity=0.142  Sum_probs=144.7

Q ss_pred             CceEEEEEcCCcCCCCceeeeeccc-----CccceEEeCCCC----CeeEEEEEecccCCCceeecceeEEEEEcCCCce
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGS----TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE   74 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~-----~~~~~~~Wsp~G----~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~   74 (321)
                      .+.|+||++..   ++.+.....+.     .....+.|+|++    ++|++. ..           ...+.+++......
T Consensus        43 ~~~v~vw~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~-----------dg~i~v~d~~~~~~  107 (366)
T 3k26_A           43 SNRVTLYECHS---QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA-GS-----------RGIIRIINPITMQC  107 (366)
T ss_dssp             TTEEEEEEECG---GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE-ET-----------TCEEEEECTTTCCE
T ss_pred             CCEEEEEEcCC---CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe-cC-----------CCEEEEEEchhceE
Confidence            56899999998   56665555433     557899999994    455543 21           12356666654433


Q ss_pred             eeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC-ceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           75 GLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                      ......|.++|.+++|+| +++.|++.  ..++.|.+||++. ..+..+     +...+.++.|+|+|++|++++   .+
T Consensus       108 ~~~~~~~~~~i~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d  182 (366)
T 3k26_A          108 IKHYVGHGNAINELKFHPRDPNLLLSV--SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG---MD  182 (366)
T ss_dssp             EEEEESCCSCEEEEEECSSCTTEEEEE--ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE---TT
T ss_pred             eeeecCCCCcEEEEEECCCCCCEEEEE--eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec---CC
Confidence            333335889999999999 88888884  6688999999964 455554     678899999999999999999   89


Q ss_pred             CcEEEEECCCCeEEEeee------------------------------CCCeeeEEEccCCCEEEEEEcCCceeecCcEE
Q 020756          148 GDMAFWDYVDGKQLGTTR------------------------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIK  197 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~------------------------------~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~  197 (321)
                      +.|++||+++++.+..+.                              ...+.+++|+  |++|++++.      |+.++
T Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~------d~~i~  254 (366)
T 3k26_A          183 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC------ENAIV  254 (366)
T ss_dssp             SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS------SSEEE
T ss_pred             CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec------CCEEE
Confidence            999999998775443222                              2278889998  789999984      99999


Q ss_pred             EEeecCc---------------ee--EEeccCceEEEEEecC--CCCCCCC
Q 020756          198 IFHHNGS---------------LF--FKKMFDKLFQAEWKPV--SPDKFGD  229 (321)
Q Consensus       198 iw~~~g~---------------~l--~~~~~~~~~~~~w~P~--~~~~~~~  229 (321)
                      |||+...               .+  +..+...+..+.|+|+  +..++..
T Consensus       255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  305 (366)
T 3k26_A          255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG  305 (366)
T ss_dssp             EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred             EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence            9998432               12  3345567888999998  6666643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.76  E-value=2.1e-16  Score=146.35  Aligned_cols=201  Identities=17%  Similarity=0.210  Sum_probs=144.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeee-------------cccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEE
Q 020756            2 GSPASVQIYACGKDLQSQPLARRS-------------FFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYL   67 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~-------------~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l   67 (321)
                      +..+.|+||++.+   +.......             .+......+.|+|+ ++.|+.. ..           ...+.++
T Consensus        63 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~-----------d~~i~iw  127 (408)
T 4a11_B           63 GSDGVIVLYDLEN---SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS-SF-----------DKTLKVW  127 (408)
T ss_dssp             ETTSCEEEEECCC---CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE-ET-----------TSEEEEE
T ss_pred             cCCCeEEEEECCC---CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE-eC-----------CCeEEEe
Confidence            3578899999998   34333332             26678889999994 4555443 21           1235666


Q ss_pred             EcCCCceeeeecCCCCCeEEEEECcCCC---EEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCe-EEE
Q 020756           68 TTDGTHEGLVPLRKEGPVHDVQWSYSGS---EFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKF-LCL  140 (321)
Q Consensus        68 ~~~g~~~~~v~l~~~~~v~~~~wsP~g~---~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~-l~~  140 (321)
                      +.... .....+.+...+..+.|+|.+.   .|++  +..++.+.+||++. ..+..+  |...+.++.|+|++++ |++
T Consensus       128 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~  204 (408)
T 4a11_B          128 DTNTL-QTADVFNFEETVYSHHMSPVSTKHCLVAV--GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT  204 (408)
T ss_dssp             ETTTT-EEEEEEECSSCEEEEEECSSCSSCCEEEE--EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE
T ss_pred             eCCCC-ccceeccCCCceeeeEeecCCCCCcEEEE--EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE
Confidence            66654 3344445788999999999554   6666  46788999999964 455555  7889999999999995 677


Q ss_pred             EccCCCCCcEEEEECCCCe-EEEee---------------eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          141 AGFGNLPGDMAFWDYVDGK-QLGTT---------------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~-~i~~~---------------~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++   .+|.|++||++++. ++..+               ..+  .+..++|+|+|++|++++.      |+.++|||+.
T Consensus       205 ~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~  275 (408)
T 4a11_B          205 AS---ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT------DNRMRLWNSS  275 (408)
T ss_dssp             EE---TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET------TSCEEEEETT
T ss_pred             Ec---CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC------CCeEEEEECC
Confidence            77   88999999998764 33332               222  6888999999999999995      8888888873


Q ss_pred             C------------------------------------------------cee--EEeccCceEEEEEecCCCCCCCC
Q 020756          203 G------------------------------------------------SLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       203 g------------------------------------------------~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .                                                +.+  +..|...+..+.|+|+...+++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence            2                                                122  23466789999999998877765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.76  E-value=8.5e-17  Score=167.00  Aligned_cols=190  Identities=13%  Similarity=0.218  Sum_probs=140.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||+...   .+.+.... .+..+..+.|+| |++|+.. +.           ...+.++++... .....+.+.
T Consensus        37 ~Dg~I~lw~~~~---~~~~~~~~-~~~~V~~l~fsp-g~~L~S~-s~-----------D~~v~lWd~~~~-~~~~~~~~~   98 (902)
T 2oaj_A           37 VTGEVHIYGQQQ---VEVVIKLE-DRSAIKEMRFVK-GIYLVVI-NA-----------KDTVYVLSLYSQ-KVLTTVFVP   98 (902)
T ss_dssp             TTSEEEEECSTT---CEEEEECS-SCCCEEEEEEET-TTEEEEE-ET-----------TCEEEEEETTTC-SEEEEEECS
T ss_pred             CCCEEEEEeCCC---cEEEEEcC-CCCCEEEEEEcC-CCEEEEE-EC-----------cCeEEEEECCCC-cEEEEEcCC
Confidence            468999999876   44433322 356788999999 8855543 21           123566666544 233334467


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE------------e--CCcCeeeEEEcCCC-CeEEEEccCCCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------------L--GSGPYNTVRWNPKG-KFLCLAGFGNLP  147 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~------------~--~~~~~~~~~~sPdG-~~l~~~g~~n~~  147 (321)
                      +.|.+++|+|+|++|++  |..++.|.+||++......            +  |.+.+.+++|+|++ ..|++++   .+
T Consensus        99 ~~V~~v~~sp~g~~l~s--gs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~---~d  173 (902)
T 2oaj_A           99 GKITSIDTDASLDWMLI--GLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY---EY  173 (902)
T ss_dssp             SCEEEEECCTTCSEEEE--EETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC---SS
T ss_pred             CCEEEEEECCCCCEEEE--EcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe---CC
Confidence            89999999999999988  5678999999997654321            1  56789999999964 6777776   78


Q ss_pred             CcEEEEECCCCeEEEeeeCC--------------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          148 GDMAFWDYVDGKQLGTTRAE--------------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~~--------------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      +.| +||+++++++..+..+                    .+.+++|+|||++|++++.      |+.|+|||+ +|+++
T Consensus       174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~------Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE------DNSLVFWDANSGHMI  246 (902)
T ss_dssp             CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET------TCCEEEEETTTCCEE
T ss_pred             CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCcEE
Confidence            999 9999999888777543                    4889999999999999995      999999999 56665


Q ss_pred             EE--e-----c-------------cCceEEEEEecC
Q 020756          207 FK--K-----M-------------FDKLFQAEWKPV  222 (321)
Q Consensus       207 ~~--~-----~-------------~~~~~~~~w~P~  222 (321)
                      ..  .     +             ...++.++|+|.
T Consensus       247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~  282 (902)
T 2oaj_A          247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE  282 (902)
T ss_dssp             EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred             EEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence            32  1     1             236899999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.8e-17  Score=162.31  Aligned_cols=199  Identities=9%  Similarity=0.021  Sum_probs=139.5

Q ss_pred             CCCceEEEEEcCCcCC--------CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc
Q 020756            2 GSPASVQIYACGKDLQ--------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH   73 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~--------~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~   73 (321)
                      +.++.|+||++.....        ..+.............+.|++++ .|+. .+.|         |  .+.++++....
T Consensus       232 s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las-gs~D---------g--tV~lWD~~~~~  298 (524)
T 2j04_B          232 SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC-GFKN---------G--FVAEFDLTDPE  298 (524)
T ss_dssp             ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE-EETT---------S--EEEEEETTBCS
T ss_pred             ecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE-EeCC---------C--EEEEEECCCCC
Confidence            3578999999986210        01122333455677899999864 4433 2211         3  35556665331


Q ss_pred             ee-eeecCCCCCeEEE--EECcCC-CEEEEEEccCCCeEEEEeCCCc-eeEEe--CC--cCeeeEEEcCCCCeEEEEccC
Q 020756           74 EG-LVPLRKEGPVHDV--QWSYSG-SEFAVVYGFMPASATIFNKKCR-PILEL--GS--GPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        74 ~~-~v~l~~~~~v~~~--~wsP~g-~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~--~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      .. .....|.++|.++  .|+|+| ..|+++  ..|++|+|||++.. .+..+  +.  ..+.+++|+|+|+.|++++  
T Consensus       299 ~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~--S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~--  374 (524)
T 2j04_B          299 VPSFYDQVHDSYILSVSTAYSDFEDTVVSTV--AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD--  374 (524)
T ss_dssp             SCSEEEECSSSCEEEEEEECCTTSCCEEEEE--ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC--
T ss_pred             CceEEeecccccEEEEEEEcCCCCCeEEEEe--ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC--
Confidence            22 2223588999999  678998 777774  67999999999642 22222  22  3578999999999999988  


Q ss_pred             CCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--ec-----cCceE
Q 020756          145 NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KM-----FDKLF  215 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~-----~~~~~  215 (321)
                       .++.|++||++++.++.++..|  .++.++|||+|++|++++.      |+.|+||++.++.+..  ..     ...++
T Consensus       375 -~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~------Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~  447 (524)
T 2j04_B          375 -GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA------DGSLIITNAARRLLHGIKNSSATQKSLRLW  447 (524)
T ss_dssp             -SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET------TTEEECCBSCSSTTTCC------CCCCEEE
T ss_pred             -CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC------CCEEEEEechHhhccccccCccceeeeEEE
Confidence             7889999999998776666665  7899999999999999994      9999999997664422  11     11478


Q ss_pred             EEEEecCCC
Q 020756          216 QAEWKPVSP  224 (321)
Q Consensus       216 ~~~w~P~~~  224 (321)
                      .++|+|+..
T Consensus       448 ~v~~sp~g~  456 (524)
T 2j04_B          448 KWDYSIKDD  456 (524)
T ss_dssp             ECBCCSSSC
T ss_pred             EeccCCCCC
Confidence            889999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.76  E-value=1.2e-16  Score=156.27  Aligned_cols=202  Identities=18%  Similarity=0.216  Sum_probs=152.4

Q ss_pred             CceEEEEEcCCcCCC----CceeeeecccCc-cceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcC------
Q 020756            4 PASVQIYACGKDLQS----QPLARRSFFRCS-TVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD------   70 (321)
Q Consensus         4 p~~v~v~~~~~~~~~----~~i~~~~~f~~~-~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~------   70 (321)
                      .+.|+||++.+   +    +.+.....+... +..+.|+|  +|++|++... |         |...+|.+...      
T Consensus        38 ~~~v~v~~~~~---~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~-d---------g~v~vw~~~~~~~~~~~  104 (615)
T 1pgu_A           38 GKSAFVRCLDD---GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE-S---------GKVIVWGWTFDKESNSV  104 (615)
T ss_dssp             TTEEEEEECCS---SCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET-T---------SEEEEEEEEEEGGGTEE
T ss_pred             CCeEEEEECCC---CCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC-C---------CEEEEEeCCCCcccccc
Confidence            46899999997   5    667777767777 88999999  9998877521 1         33334444211      


Q ss_pred             CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--CeEEEEeCCCceeEEe--CCcCeeeEEEcCCCC-eEEEEccCC
Q 020756           71 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--ASATIFNKKCRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGN  145 (321)
Q Consensus        71 g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~--~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n  145 (321)
                      ..........|..+|.+++|+|+|++|+++....+  +.+.+|| .+..+..+  |...+.++.|+|+|+ +|++++   
T Consensus       105 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---  180 (615)
T 1pgu_A          105 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVG---  180 (615)
T ss_dssp             EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEE---
T ss_pred             cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEe---
Confidence            11111122247889999999999999998743322  5788888 44556665  788999999999998 677787   


Q ss_pred             CCCcEEEEECCCCeEEEeeeCC-----CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEee-cCceeEE------eccC
Q 020756          146 LPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK------KMFD  212 (321)
Q Consensus       146 ~~g~i~iwD~~~~~~i~~~~~~-----~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~------~~~~  212 (321)
                      .++.|++||+.+++.+..+..+     .+.+++|+|+ |++|++++.      |+.++|||+ +++.+..      .+..
T Consensus       181 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~  254 (615)
T 1pgu_A          181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS------DRKISCFDGKSGEFLKYIEDDQEPVQG  254 (615)
T ss_dssp             TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET------TCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC------CCeEEEEECCCCCEeEEecccccccCC
Confidence            8899999999999998888765     4788999999 999999994      999999998 4555532      5667


Q ss_pred             ceEEEEEecCCCCCCCC
Q 020756          213 KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       213 ~~~~~~w~P~~~~~~~~  229 (321)
                      .+..+.|+ +...++..
T Consensus       255 ~v~~~~~~-~~~~l~~~  270 (615)
T 1pgu_A          255 GIFALSWL-DSQKFATV  270 (615)
T ss_dssp             CEEEEEES-SSSEEEEE
T ss_pred             ceEEEEEc-CCCEEEEE
Confidence            89999999 77666654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.75  E-value=1.4e-17  Score=177.19  Aligned_cols=199  Identities=11%  Similarity=0.135  Sum_probs=158.1

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++++   ++.+.....+...+..+.|+|+|++|+....     .     |  .+.+++.... .......|.
T Consensus       981 ~~g~i~i~d~~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----d-----g--~i~vwd~~~~-~~~~~~~~~ 1044 (1249)
T 3sfz_A          981 EDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTADGKTLISSSE-----D-----S--VIQVWNWQTG-DYVFLQAHQ 1044 (1249)
T ss_dssp             TTSCCEEEETTT---TSCEEECCCCSSCCCCEEECSSSSCEEEECS-----S-----S--BEEEEETTTT-EEECCBCCS
T ss_pred             CCCCEEEEEcCC---CceeeecccCCCceEEEEECCCCCEEEEEcC-----C-----C--EEEEEECCCC-ceEEEecCC
Confidence            457899999998   6777777777788889999999999877421     1     2  2556666554 333444688


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|.++.|+|++.. ++  +..++.+.+||+. +..+..+  |...+.++.|+|+|++|++++   .++.|++||+.+++
T Consensus      1045 ~~v~~~~~~~~~~l-~~--~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s---~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A         1045 ETVKDFRLLQDSRL-LS--WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS---ADKTAKIWSFDLLS 1118 (1249)
T ss_dssp             SCEEEEEECSSSEE-EE--EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC---CSSCCCEECSSSSS
T ss_pred             CcEEEEEEcCCCcE-EE--EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc---CCCcEEEEECCCcc
Confidence            99999999998754 33  3568899999995 4444555  788999999999999999998   89999999999998


Q ss_pred             EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeE-----------EeccCceEEEEEecCCCC
Q 020756          160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFF-----------KKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~-----------~~~~~~~~~~~w~P~~~~  225 (321)
                      ++..+..|  .+++++|||||++|++++.      |+.|+|||+. |+.+.           ..+...+..++|+|++..
T Consensus      1119 ~~~~l~~h~~~v~~~~~s~dg~~lat~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 1192 (1249)
T 3sfz_A         1119 PLHELKGHNGCVRCSAFSLDGILLATGDD------NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192 (1249)
T ss_dssp             CSBCCCCCSSCEEEEEECSSSSEEEEEET------TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSC
T ss_pred             eeeeeccCCCcEEEEEECCCCCEEEEEeC------CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCE
Confidence            88888776  6899999999999999994      9999999995 55442           346678999999999988


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      ++..
T Consensus      1193 l~s~ 1196 (1249)
T 3sfz_A         1193 LVSA 1196 (1249)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.75  E-value=4.1e-16  Score=139.94  Aligned_cols=219  Identities=14%  Similarity=0.193  Sum_probs=153.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecc--cCccceEEeCCCCCeeEEEEEecc-----c-CCCcee---e-----------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDV-----D-KTNQSY---Y-----------   59 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f--~~~~~~~~Wsp~G~~l~~~~~~d~-----d-~t~~s~---~-----------   59 (321)
                      |..+.|+||++.+   ++.+....+.  ...+..+.|+|+|++|+... .|.     + .+++..   .           
T Consensus        42 g~D~tV~iWd~~t---g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs-~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~  117 (318)
T 4ggc_A           42 ALDNSVYLWSASS---GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-SSAEVQLWDVQQQKRLRNMTSHSARVGSLSW  117 (318)
T ss_dssp             EETTEEEEEETTT---CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             EeCCEEEEEECCC---CCEEEEEEecCCCCeEEEEEECCCCCEEEEEE-CCCcEEEeecCCceeEEEecCccceEEEeec
Confidence            4578999999998   7777666543  34577899999999887643 110     0 111100   0           


Q ss_pred             ---------cceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe--C
Q 020756           60 ---------GESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL--G  122 (321)
Q Consensus        60 ---------g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~--~  122 (321)
                               ....+..+..... ........|...+..+.|+++|++|++.  ..|+.+.+||+...     .....  +
T Consensus       118 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~  195 (318)
T 4ggc_A          118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG--GNDNLVNVWPSAPGEGGWVPLQTFTQH  195 (318)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSCEEEEESSCBTTBSCCSEEECCC
T ss_pred             CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE--ecCcceeEEECCCCcccccceeeeccc
Confidence                     0000111111111 1112223578899999999999998884  66899999998532     12222  6


Q ss_pred             CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ...+..+.|+|++..++....+..++.|++||............. .+..+.|+|++.++++++..    .|+.|+|||+
T Consensus       196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~----~d~~i~iwd~  271 (318)
T 4ggc_A          196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF----AQNQLVIWKY  271 (318)
T ss_dssp             CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT----TTCCEEEEET
T ss_pred             CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc----CCCEEEEEEC
Confidence            778999999999887766544557899999999988777666554 78889999999999987632    3899999998


Q ss_pred             -cCcee--EEeccCceEEEEEecCCCCCCCCc
Q 020756          202 -NGSLF--FKKMFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       202 -~g~~l--~~~~~~~~~~~~w~P~~~~~~~~~  230 (321)
                       +++++  +..|...|..++|+|++..+++..
T Consensus       272 ~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s  303 (318)
T 4ggc_A          272 PTMAKVAELKGHTSRVLSLTMSPDGATVASAA  303 (318)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence             46666  456888999999999998888753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.75  E-value=5.3e-17  Score=147.47  Aligned_cols=195  Identities=13%  Similarity=0.069  Sum_probs=144.1

Q ss_pred             CCceEEEEEc-CCcCCCCceeeeec--ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC--C-----
Q 020756            3 SPASVQIYAC-GKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--T-----   72 (321)
Q Consensus         3 ~p~~v~v~~~-~~~~~~~~i~~~~~--f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g--~-----   72 (321)
                      ..+.|+||++ ..   + .......  +......+.|+| ++.|+... .|         |  .+.+++...  .     
T Consensus        77 ~dg~i~~wd~~~~---~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~-~d---------~--~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           77 VQGEILKVDLIGS---P-SFQALTNNEANLGICRICKYG-DDKLIAAS-WD---------G--LIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             TTSCEEEECSSSS---S-SEEECBSCCCCSCEEEEEEET-TTEEEEEE-TT---------S--EEEEECHHHHTTBCEEE
T ss_pred             CCCeEEEEEeccC---C-ceEeccccCCCCceEEEEeCC-CCEEEEEc-CC---------C--eEEEEcccccccccccc
Confidence            5688999999 76   3 3344444  667788999999 88776642 11         2  244444432  0     


Q ss_pred             -ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-c--eeE--Ee-CCcCeeeEEEcC-CCCeEEEEccC
Q 020756           73 -HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R--PIL--EL-GSGPYNTVRWNP-KGKFLCLAGFG  144 (321)
Q Consensus        73 -~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~--~~~--~~-~~~~~~~~~~sP-dG~~l~~~g~~  144 (321)
                       ......+.+.+.|.+++|+|++  |++  +..++.+.+||++. .  ...  .. +...+.++.|+| +|++|++++  
T Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~--l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~--  213 (342)
T 1yfq_A          140 KNLNSNNTKVKNKIFTMDTNSSR--LIV--GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--  213 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEECSSE--EEE--EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--
T ss_pred             cCCeeeEEeeCCceEEEEecCCc--EEE--EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe--
Confidence             1223334588999999999988  555  46788999999976 2  222  22 677899999999 999999999  


Q ss_pred             CCCCcEEEEECCCC------eEEEeeeCC-----------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          145 NLPGDMAFWDYVDG------KQLGTTRAE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       145 n~~g~i~iwD~~~~------~~i~~~~~~-----------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                       .+|.|.+||++..      +.+..+..+           .+..++|+|+|++|++++.      |+.|+|||+. ++++
T Consensus       214 -~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          214 -IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKI  286 (342)
T ss_dssp             -TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEE
T ss_pred             -cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhHh
Confidence             8999999999876      566666655           7889999999999999994      9999999995 5555


Q ss_pred             E--Eec-cCceEEEEEecCCCCCCCC
Q 020756          207 F--KKM-FDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       207 ~--~~~-~~~~~~~~w~P~~~~~~~~  229 (321)
                      .  ..+ ...+..+.  |++..+++.
T Consensus       287 ~~~~~~h~~~v~~~~--~~~~~l~s~  310 (342)
T 1yfq_A          287 KNFAKFNEDSVVKIA--CSDNILCLA  310 (342)
T ss_dssp             EECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred             hhhhcccCCCceEec--CCCCeEEEE
Confidence            3  344 67788888  888777765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.75  E-value=5.9e-16  Score=145.65  Aligned_cols=210  Identities=10%  Similarity=0.038  Sum_probs=153.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|++|++..   ++.+............+.|+|+|+.+++....           ...|+.++.... .....+...
T Consensus       189 ~d~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~i~~~d~~~~-~~~~~~~~~  253 (433)
T 3bws_A          189 QANAVHVFDLKT---LAYKATVDLTGKWSKILLYDPIRDLVYCSNWI-----------SEDISVIDRKTK-LEIRKTDKI  253 (433)
T ss_dssp             GGTEEEEEETTT---CCEEEEEECSSSSEEEEEEETTTTEEEEEETT-----------TTEEEEEETTTT-EEEEECCCC
T ss_pred             CCCEEEEEECCC---ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-----------CCcEEEEECCCC-cEEEEecCC
Confidence            357899999988   67776666566678899999999998775311           124677777554 333444556


Q ss_pred             CCeEEEEECcCCCEEEEEEcc------CCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGF------MPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~------~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      +.+.+++|+|+|+.+++....      .++.|.+||+... .+..+ +...+..+.|+|+|+.|++++.  .++.|.+||
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d  331 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYD  331 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET--TTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec--CCCEEEEEE
Confidence            679999999999988886421      3679999999654 33334 4567889999999987766541  679999999


Q ss_pred             CCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCce---------eecCcEEEEee-cCceeEE-eccCceEEEEEecC
Q 020756          155 YVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRL---------QIDNGIKIFHH-NGSLFFK-KMFDKLFQAEWKPV  222 (321)
Q Consensus       155 ~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl---------~~d~~v~iw~~-~g~~l~~-~~~~~~~~~~w~P~  222 (321)
                      +.+++.+..+... .+..++|+|||++|+++......         ..|+.+++||. +++.+.. .....+..+.|+|+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d  411 (433)
T 3bws_A          332 LKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPD  411 (433)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             CCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCC
Confidence            9999888777654 78899999999999988842100         01458999998 4555533 23457899999999


Q ss_pred             CCCCCCC
Q 020756          223 SPDKFGD  229 (321)
Q Consensus       223 ~~~~~~~  229 (321)
                      +..++..
T Consensus       412 g~~l~~~  418 (433)
T 3bws_A          412 NRYLVIS  418 (433)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEE
Confidence            8877643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.75  E-value=4.1e-16  Score=148.38  Aligned_cols=197  Identities=13%  Similarity=0.106  Sum_probs=149.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|++++ . ++....|         |  .+.+++............|
T Consensus       139 s~dg~i~vwd~~~---~~~~~~~~~h~~~V~~l~~~~~~-~-l~s~s~d---------g--~i~vwd~~~~~~~~~~~~h  202 (464)
T 3v7d_B          139 ADDKMIRVYDSIN---KKFLLQLSGHDGGVWALKYAHGG-I-LVSGSTD---------R--TVRVWDIKKGCCTHVFEGH  202 (464)
T ss_dssp             ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECSTT-E-EEEEETT---------S--CEEEEETTTTEEEEEECCC
T ss_pred             cCCCcEEEEECCC---CcEEEEEeCCCcCEEEEEEcCCC-E-EEEEeCC---------C--CEEEEECCCCcEEEEECCC
Confidence            4578999999998   78888888788899999999988 3 3333221         2  2566666555333333358


Q ss_pred             CCCeEEEEECc--CCCEEEEEEccCCCeEEEEeCCCce------------------------eEEe--CCcCeeeEEEcC
Q 020756           82 EGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKCRP------------------------ILEL--GSGPYNTVRWNP  133 (321)
Q Consensus        82 ~~~v~~~~wsP--~g~~l~~~~g~~~~~i~i~d~~~~~------------------------~~~~--~~~~~~~~~~sP  133 (321)
                      .++|.+++|++  ++..|++  +..++.+.+||+....                        +..+  |...+.++  +|
T Consensus       203 ~~~v~~l~~~~~~~~~~l~s--~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~  278 (464)
T 3v7d_B          203 NSTVRCLDIVEYKNIKYIVT--GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG  278 (464)
T ss_dssp             SSCEEEEEEEESSSCEEEEE--EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE
T ss_pred             CCccEEEEEecCCCCCEEEE--EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC
Confidence            89999999984  6677776  4678999999985432                        2233  44445544  78


Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EE
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FK  208 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~  208 (321)
                      +|++|++++   .++.|++||+.+++++..+..|  .+..+.|+|+|++|++++.      |+.++|||+ +|+.+  +.
T Consensus       279 ~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          279 HGNIVVSGS---YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM------DTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             ETTEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET------TSCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEe---CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEe
Confidence            899999999   8999999999999999988776  7889999999999999994      999999998 56665  44


Q ss_pred             eccCceEEEEEecCCCCCCCC
Q 020756          209 KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       209 ~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .|...+..+.|++  ..+++.
T Consensus       350 ~h~~~v~~~~~~~--~~l~s~  368 (464)
T 3v7d_B          350 GHTALVGLLRLSD--KFLVSA  368 (464)
T ss_dssp             CCSSCEEEEEECS--SEEEEE
T ss_pred             CCCCcEEEEEEcC--CEEEEE
Confidence            5777899999974  344443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.75  E-value=3.8e-16  Score=144.62  Aligned_cols=177  Identities=11%  Similarity=0.132  Sum_probs=128.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCC---eeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST---GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~---~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      +..+.|+||++..   ++.+.... +......+.|++.+.   .+++.. .+         |  .+++++..........
T Consensus       119 ~~d~~i~iwd~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~--~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          119 SFDKTLKVWDTNT---LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT-RG---------P--KVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             ETTSEEEEEETTT---TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE-SS---------S--SEEEEESSSSCCCEEE
T ss_pred             eCCCeEEEeeCCC---Cccceecc-CCCceeeeEeecCCCCCcEEEEEc-CC---------C--eEEEEeCCCcceeeee
Confidence            3578999999998   56665555 456777888988554   554432 11         2  2556666544333333


Q ss_pred             cCCCCCeEEEEECcCCCE-EEEEEccCCCeEEEEeCCCc--eeEE-----------------eCCcCeeeEEEcCCCCeE
Q 020756           79 LRKEGPVHDVQWSYSGSE-FAVVYGFMPASATIFNKKCR--PILE-----------------LGSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~-l~~~~g~~~~~i~i~d~~~~--~~~~-----------------~~~~~~~~~~~sPdG~~l  138 (321)
                      ..|.++|.+++|+|++++ |++  +..++.+.+||++..  .+..                 .+...+.++.|+|+|++|
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILAT--ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEE--EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             cCCCCcEEEEEECCCCCcEEEE--EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            358899999999999996 555  467899999998532  2222                 256789999999999999


Q ss_pred             EEEccCCCCCcEEEEECCCC-----------------------------------------------eEEEeeeCC--Ce
Q 020756          139 CLAGFGNLPGDMAFWDYVDG-----------------------------------------------KQLGTTRAE--CS  169 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~-----------------------------------------------~~i~~~~~~--~~  169 (321)
                      ++++   .++.|++||+.++                                               +.+..+..|  .+
T Consensus       261 ~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v  337 (408)
T 4a11_B          261 LTVG---TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV  337 (408)
T ss_dssp             EEEE---TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEec---CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence            9998   7888888887653                                               345555555  68


Q ss_pred             eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      +.++|+|||++|++++.      |+.++||++....
T Consensus       338 ~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~  367 (408)
T 4a11_B          338 DCCVFQSNFQELYSGSR------DCNILAWVPSLYE  367 (408)
T ss_dssp             EEEEEETTTTEEEEEET------TSCEEEEEECC--
T ss_pred             EEEEEcCCCCEEEEECC------CCeEEEEeCCCCC
Confidence            88999999999999995      9999999996443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.1e-16  Score=147.06  Aligned_cols=195  Identities=9%  Similarity=0.090  Sum_probs=130.5

Q ss_pred             CCCceEEEEEcCCc------CCCCceeeee-cccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCC
Q 020756            2 GSPASVQIYACGKD------LQSQPLARRS-FFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT   72 (321)
Q Consensus         2 g~p~~v~v~~~~~~------~~~~~i~~~~-~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~   72 (321)
                      +..+.|+||+....      ..++.+.... -+......+.|+|  +|++++... .|         |  .+.+++....
T Consensus        92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~d---------g--~i~~wd~~~~  159 (343)
T 3lrv_A           92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD-NR---------G--TIGFQSYEDD  159 (343)
T ss_dssp             CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE-TT---------C--CEEEEESSSS
T ss_pred             cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe-CC---------C--cEEEEECCCC
Confidence            45678899876631      0123233322 2235688999999  999887642 11         2  2555665544


Q ss_pred             ceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-ee-EEe---CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           73 HEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI-LEL---GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        73 ~~~~v~-l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~-~~~---~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      ....+. ..+...|.+++|+|+|..|++  |..++.|+|||++.. .+ ..+   |...+.++.|+|+|.+|++++   .
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~pdg~~las--g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~---~  234 (343)
T 3lrv_A          160 SQYIVHSAKSDVEYSSGVLHKDSLLLAL--YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC---D  234 (343)
T ss_dssp             CEEEEECCCSSCCCCEEEECTTSCEEEE--ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE---S
T ss_pred             cEEEEEecCCCCceEEEEECCCCCEEEE--EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe---C
Confidence            332222 345668999999999999888  578999999999643 33 344   678999999999999999997   4


Q ss_pred             CCcEEEEECCCCeEEEeeeC---C--Ce--eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEEeccCceEEEE
Q 020756          147 PGDMAFWDYVDGKQLGTTRA---E--CS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMFDKLFQAE  218 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~---~--~~--~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~~~~~~~~~~~  218 (321)
                      + .|++||+++++.+..+..   +  .+  ..++|+|+|++|++++.     .|+.++||++... .....  ..+..+.
T Consensus       235 ~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~-----~d~~i~v~~~~~~~~~~~~--~~~~~~~  306 (343)
T 3lrv_A          235 Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN-----ESNSLTIYKFDKKTKNWTK--DEESALC  306 (343)
T ss_dssp             S-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET-----TTTEEEEEEECTTTCSEEE--EEEEECC
T ss_pred             C-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC-----CCCcEEEEEEcccccceEe--cCceeEe
Confidence            4 999999998866544432   2  22  35999999999999883     2889999999432 22221  3445566


Q ss_pred             Eec
Q 020756          219 WKP  221 (321)
Q Consensus       219 w~P  221 (321)
                      |.|
T Consensus       307 ~~~  309 (343)
T 3lrv_A          307 LQS  309 (343)
T ss_dssp             C--
T ss_pred             cCc
Confidence            666

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1e-15  Score=136.86  Aligned_cols=195  Identities=11%  Similarity=0.107  Sum_probs=145.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--e-eeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--E-GLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~-~~v~   78 (321)
                      +..+.|+||++..   +..+.....+......+.|+|+|++|++...     .     |.  +..+++....  . ....
T Consensus        36 ~~dg~v~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d-----g~--i~~~~~~~~~~~~~~~~~  100 (313)
T 3odt_A           36 SRDGTVRLWSKDD---QWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-----D-----TM--INGVPLFATSGEDPLYTL  100 (313)
T ss_dssp             ETTSEEEEEEESS---SEEEEEEEECSSCEEEEEEETTTTEEEEEET-----T-----SC--EEEEETTCCTTSCC-CEE
T ss_pred             EcCCcEEEEECCC---CEEEEEeecCCccEEEEEECCCCCEEEEecC-----C-----Ce--EEEEEeeecCCCCcccch
Confidence            3578999999987   6666666667888899999999998887531     1     22  3444443221  1 2222


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEEC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      ..|...|.++.|  +++.|++.  ..++.+.+|| ....+..+  +...+.++.|+| ++++|++++   .++.|++||.
T Consensus       101 ~~~~~~i~~~~~--~~~~l~~~--~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~  172 (313)
T 3odt_A          101 IGHQGNVCSLSF--QDGVVISG--SWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTAS---ADKTIKLWQN  172 (313)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEE--ETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEE---TTSCEEEEET
T ss_pred             hhcccCEEEEEe--cCCEEEEE--eCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEE---CCCCEEEEec
Confidence            357899999999  56777774  6689999999 44455444  788999999998 999999998   8999999994


Q ss_pred             CCCeEEEeeeC-C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          156 VDGKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       156 ~~~~~i~~~~~-~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                        .+.+..+.. +  .+..++|+|+|. |++++.      |+.++|||+. ++.+  +..+...+..+.|+|+. .++..
T Consensus       173 --~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~  242 (313)
T 3odt_A          173 --DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN------DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC  242 (313)
T ss_dssp             --TEEEEEECSSCSSCEEEEEEEETTE-EEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred             --CceEEEEeccCcccEEEEEEcCCCe-EEEccC------CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence              455555544 3  788999999999 777774      9999999995 5555  44577899999999998 45543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.74  E-value=1e-16  Score=146.05  Aligned_cols=178  Identities=17%  Similarity=0.207  Sum_probs=124.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCC--CCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~--G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~   78 (321)
                      +.++.|+||++.+.. -..+.....+...+..+.|+|+  |.+|+.. +.|         |...+|.+...+... ....
T Consensus        78 s~D~~v~iWd~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg-s~D---------~~i~lwd~~~~~~~~~~~~~  146 (316)
T 3bg1_A           78 SYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACG-SSD---------GAISLLTYTGEGQWEVKKIN  146 (316)
T ss_dssp             ETTSCEEEECCSSSC-CCEEEEECCCSSCCCEEEECCTTTCSCEEEE-CSS---------SCEEEEEECSSSCEEECCBT
T ss_pred             ECCCEEEEEECCCCc-ceEEEEccCCCCceEEEEECCCCCCcEEEEE-cCC---------CCEEEEecCCCCCcceeeee
Confidence            357899999998721 1234444445667889999998  5555543 211         333344332221111 1222


Q ss_pred             cCCCCCeEEEEECcCC-----------------CEEEEEEccCCCeEEEEeCCCc----eeEEe--CCcCeeeEEEcCCC
Q 020756           79 LRKEGPVHDVQWSYSG-----------------SEFAVVYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKG  135 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g-----------------~~l~~~~g~~~~~i~i~d~~~~----~~~~~--~~~~~~~~~~sPdG  135 (321)
                      ..|...|.++.|+|++                 +.|++  +..|+.|+|||++..    .+..+  |...+.++.|+|++
T Consensus       147 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~  224 (316)
T 3bg1_A          147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS--GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI  224 (316)
T ss_dssp             TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC--CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred             ccccCCcceEEEccccCCccccccccccCccccceEEE--ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence            3477899999999983                 56666  678999999998632    34444  77889999999997


Q ss_pred             ----CeEEEEccCCCCCcEEEEECCCC-------eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          136 ----KFLCLAGFGNLPGDMAFWDYVDG-------KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       136 ----~~l~~~g~~n~~g~i~iwD~~~~-------~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                          ++|++++   .|+.|+|||+++.       +.+..+ ...+..++|+|||++|++++.      |+.++||+..
T Consensus       225 ~~~~~~las~s---~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~------D~~v~lw~~~  292 (316)
T 3bg1_A          225 GLPTSTIASCS---QDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGG------DNKVTLWKES  292 (316)
T ss_dssp             SCSCCEEEEEE---TTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEES------SSCEEEEEEC
T ss_pred             CCCCceEEEEc---CCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcC------CCeEEEEEEC
Confidence                8899999   9999999998762       122222 237889999999999999994      9999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.74  E-value=1.4e-16  Score=144.77  Aligned_cols=201  Identities=6%  Similarity=-0.005  Sum_probs=145.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCC-eeEEEEEecccCCCceeecceeEEEEEc-CCCceeeeec
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST-GLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~-~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g~~~~~v~l   79 (321)
                      +..+.|+||++.......++.....+......+.|+|+|+ +|++.. .+         |  .|++++. .+... ....
T Consensus        30 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d---------g--~i~~wd~~~~~~~-~~~~   96 (342)
T 1yfq_A           30 SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-VQ---------G--EILKVDLIGSPSF-QALT   96 (342)
T ss_dssp             ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-TT---------S--CEEEECSSSSSSE-EECB
T ss_pred             cCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-CC---------C--eEEEEEeccCCce-Eecc
Confidence            3578999999988210112344445567888999999999 776642 11         2  3566666 55533 3333


Q ss_pred             C--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC----------ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           80 R--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC----------RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        80 ~--~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~----------~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      .  |...|.+++|+| ++.|+++  ..++.|.+||++.          ..+..+ +...+.++.|+|++  |++++   .
T Consensus        97 ~~~~~~~v~~l~~~~-~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~---~  168 (342)
T 1yfq_A           97 NNEANLGICRICKYG-DDKLIAA--SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGM---N  168 (342)
T ss_dssp             SCCCCSCEEEEEEET-TTEEEEE--ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEE---S
T ss_pred             ccCCCCceEEEEeCC-CCEEEEE--cCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEe---C
Confidence            5  889999999999 8888875  6689999999853          233334 67889999999998  77777   7


Q ss_pred             CCcEEEEECCC-CeE--EEeeeC--CCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCc-------ee--EEecc
Q 020756          147 PGDMAFWDYVD-GKQ--LGTTRA--ECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGS-------LF--FKKMF  211 (321)
Q Consensus       147 ~g~i~iwD~~~-~~~--i~~~~~--~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~-------~l--~~~~~  211 (321)
                      ++.|.+||+++ +..  ......  ..+..++|+| +|++|++++.      |+.++||+++..       .+  +..+.
T Consensus       169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI------DGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET------TSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec------CCcEEEEEEcCCCcccccccceeeeccc
Confidence            89999999988 432  122222  3788999999 9999999994      999999999543       22  44443


Q ss_pred             C---------ceEEEEEecCCCCCCCC
Q 020756          212 D---------KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       212 ~---------~~~~~~w~P~~~~~~~~  229 (321)
                      .         .+..+.|+|+...++..
T Consensus       243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~  269 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             ccccccccceeEEEEEEcCCCCEEEEe
Confidence            3         89999999998877765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.73  E-value=5.5e-16  Score=147.13  Aligned_cols=184  Identities=10%  Similarity=0.196  Sum_probs=130.7

Q ss_pred             CCCceEEEEEcCCcCCC-Cc---eeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--ee
Q 020756            2 GSPASVQIYACGKDLQS-QP---LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EG   75 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~-~~---i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~   75 (321)
                      +..+.|+||++...... ..   ......+......+.|+|++..+++.+..           ...|++++.....  ..
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-----------dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-----------DQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-----------TSEEEEEETTCSCSSSC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-----------CCeEEEEECCCCCCCcc
Confidence            45789999999872101 11   23333455678899999976666555321           2235566654431  12


Q ss_pred             e-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCC-eEEEEccCCCCCc
Q 020756           76 L-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGD  149 (321)
Q Consensus        76 ~-v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g~  149 (321)
                      . ....|...|++++|+|++..++++ |..++.|.+||++.  .++..+  |...+.++.|+|+|+ +|++++   .++.
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~t-g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~---~d~~  345 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILAT-GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---TDRR  345 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEE-EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE---TTSC
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEE-EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe---CCCc
Confidence            2 222578999999999999854443 56789999999964  455555  788999999999996 467777   7899


Q ss_pred             EEEEECCC--------------CeEEEeeeCC--CeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeecCcee
Q 020756          150 MAFWDYVD--------------GKQLGTTRAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       150 i~iwD~~~--------------~~~i~~~~~~--~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      |.|||+..              .+.+..+..|  .+..++|+|+|. +|++++      .|+.|+||++....+
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s------~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS------EDNIMQVWQMAENVY  413 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE------TTSEEEEEEECHHHH
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE------CCCCEEEeEcccccc
Confidence            99999986              2556666555  689999999999 677777      499999999865443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.73  E-value=1.6e-16  Score=144.98  Aligned_cols=165  Identities=13%  Similarity=0.291  Sum_probs=125.7

Q ss_pred             CCCceEEEEEcCCcCCCCce-eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPL-ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i-~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      +..+.|+||++...  +..+ .....+......+.|+|+|++|++...            ...+.+++..... ......
T Consensus        61 ~~dg~i~iw~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------------dg~v~iwd~~~~~-~~~~~~  125 (368)
T 3mmy_A           61 SWANDVRCWEVQDS--GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC------------DKTAKMWDLSSNQ-AIQIAQ  125 (368)
T ss_dssp             ETTSEEEEEEECTT--SCEEEEEEEECSSCEEEEEECTTSSEEEEEET------------TSEEEEEETTTTE-EEEEEE
T ss_pred             CCCCcEEEEEcCCC--CceeEEEeccccCCEEEEEECcCCCEEEEEcC------------CCcEEEEEcCCCC-ceeecc
Confidence            35689999999872  2333 455556788899999999999886521            1236666766653 333446


Q ss_pred             CCCCeEEEEE--CcCCCEEEEEEccCCCeEEEEeCCCc-ee---------------------------------------
Q 020756           81 KEGPVHDVQW--SYSGSEFAVVYGFMPASATIFNKKCR-PI---------------------------------------  118 (321)
Q Consensus        81 ~~~~v~~~~w--sP~g~~l~~~~g~~~~~i~i~d~~~~-~~---------------------------------------  118 (321)
                      |.++|.+++|  +|+++.|+++  ..++.|.+||++.. .+                                       
T Consensus       126 ~~~~v~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  203 (368)
T 3mmy_A          126 HDAPVKTIHWIKAPNYSCVMTG--SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE  203 (368)
T ss_dssp             CSSCEEEEEEEECSSCEEEEEE--ETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE
T ss_pred             ccCceEEEEEEeCCCCCEEEEc--cCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccch
Confidence            8899999999  8999888874  56788888886321 00                                       


Q ss_pred             ---------------------------------------------------EEe--CCc------------CeeeEEEcC
Q 020756          119 ---------------------------------------------------LEL--GSG------------PYNTVRWNP  133 (321)
Q Consensus       119 ---------------------------------------------------~~~--~~~------------~~~~~~~sP  133 (321)
                                                                         ..+  +..            .+.++.|+|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  283 (368)
T 3mmy_A          204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP  283 (368)
T ss_dssp             EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT
T ss_pred             hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec
Confidence                                                               011  111            588999999


Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s  186 (321)
                      +|++|++++   .||.|++||+.+++++..+..|  .+..++|+|||++|++++.
T Consensus       284 ~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          284 VHGTLATVG---SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS  335 (368)
T ss_dssp             TTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred             CCCEEEEEc---cCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence            999999999   8999999999999999988875  7899999999999999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.72  E-value=8.1e-16  Score=150.46  Aligned_cols=202  Identities=12%  Similarity=0.083  Sum_probs=147.8

Q ss_pred             CCceEEEEEcCCcC-----CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            3 SPASVQIYACGKDL-----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         3 ~p~~v~v~~~~~~~-----~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      ..+.|+||++.+..     ....+.....+......+.|+|+|++|++... +.+.       ...++.++ .+. ....
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~-------~~~v~~~d-~~~-~~~~  155 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE-GRDN-------FGVFISWD-SGN-SLGE  155 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC-CSSC-------SEEEEETT-TCC-EEEE
T ss_pred             CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc-CCCC-------ccEEEEEE-CCC-ccee
Confidence            57899999997510     02445555556778899999999999887632 1111       12355554 222 2222


Q ss_pred             ecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCC-ceeEEe--CCc---CeeeEEEcCC-CCeEEEEccCCCCCc
Q 020756           78 PLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC-RPILEL--GSG---PYNTVRWNPK-GKFLCLAGFGNLPGD  149 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~---~~~~~~~sPd-G~~l~~~g~~n~~g~  149 (321)
                      ...|.+.|.+++|+|+++ .|++  +..++.+.+||+.. ..+..+  |..   .+.++.|+|+ |++|++++   .++.
T Consensus       156 ~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~  230 (615)
T 1pgu_A          156 VSGHSQRINACHLKQSRPMRSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SDRK  230 (615)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TTCC
T ss_pred             eecCCccEEEEEECCCCCcEEEE--EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe---CCCe
Confidence            335889999999999998 5555  46689999999864 455555  566   8999999999 99999998   8999


Q ss_pred             EEEEECCCCeEEEee-e---CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEe--c----cCceEE
Q 020756          150 MAFWDYVDGKQLGTT-R---AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--M----FDKLFQ  216 (321)
Q Consensus       150 i~iwD~~~~~~i~~~-~---~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~--~----~~~~~~  216 (321)
                      |++||+.+++.+..+ .   .+  .+..++|+ +|++|++++.      |+.++|||+. ++.+...  +    ...+..
T Consensus       231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  303 (615)
T 1pgu_A          231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVG  303 (615)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET------TSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred             EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC------CCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence            999999999988888 3   44  78899999 9999999994      8999999996 5555332  2    246677


Q ss_pred             EEEecCCCCCC
Q 020756          217 AEWKPVSPDKF  227 (321)
Q Consensus       217 ~~w~P~~~~~~  227 (321)
                      +.|. +...++
T Consensus       304 ~~~~-~~~~l~  313 (615)
T 1pgu_A          304 VVAT-GNGRII  313 (615)
T ss_dssp             EEEE-ETTEEE
T ss_pred             EEeC-CCCeEE
Confidence            7775 444444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=2.9e-16  Score=138.51  Aligned_cols=211  Identities=16%  Similarity=0.222  Sum_probs=140.2

Q ss_pred             CceEEEEEcCCcCCCCceeeeecc-cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f-~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      .+.|.+|++...  ++........ ......+.|+|+|++|++.... .+       +...||.++..+.....  +...
T Consensus        61 ~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~-------~~~~l~~~~~~~~~~~~--~~~~  128 (297)
T 2ojh_A           61 EGLLYRLSLAGD--PSPEKVDTGFATICNNDHGISPDGALYAISDKV-EF-------GKSAIYLLPSTGGTPRL--MTKN  128 (297)
T ss_dssp             TTEEEEEESSSC--CSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-TT-------SSCEEEEEETTCCCCEE--CCSS
T ss_pred             CCeEEEEeCCCC--CCceEeccccccccccceEECCCCCEEEEEEeC-CC-------CcceEEEEECCCCceEE--eecC
Confidence            467899998761  1222222222 2445679999999999886421 11       34568888877654333  3444


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeC--CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC-C
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-D  157 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~--~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~-~  157 (321)
                      ..+..++|+|+|+.|++.. ..++.+.||++  .+.....+  +...+..+.|+|+|++|++++.  .++.+.||+++ .
T Consensus       129 ~~~~~~~~spdg~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~  205 (297)
T 2ojh_A          129 LPSYWHGWSPDGKSFTYCG-IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS--RTGQMQIWRVRVD  205 (297)
T ss_dssp             SSEEEEEECTTSSEEEEEE-EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETT
T ss_pred             CCccceEECCCCCEEEEEE-CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec--CCCCccEEEECCC
Confidence            5699999999999988653 34677788874  44555555  5677899999999999988762  35777888765 3


Q ss_pred             CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCcee-----ecCcEEEEeecCce---eEE--eccCceEEEEEecCCCC
Q 020756          158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ-----IDNGIKIFHHNGSL---FFK--KMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~-----~d~~v~iw~~~g~~---l~~--~~~~~~~~~~w~P~~~~  225 (321)
                      +..+..+..+  .+..+.|+|||++|++++......     .+..+.+||+.+..   +..  .+...+..+.|+|+...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          206 GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence            4444445443  567799999999999988411000     12569999996542   222  44567888899999877


Q ss_pred             CCCC
Q 020756          226 KFGD  229 (321)
Q Consensus       226 ~~~~  229 (321)
                      ++..
T Consensus       286 l~~~  289 (297)
T 2ojh_A          286 FAYV  289 (297)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.72  E-value=7.2e-16  Score=142.86  Aligned_cols=195  Identities=9%  Similarity=0.086  Sum_probs=127.0

Q ss_pred             EEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEE
Q 020756            9 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV   88 (321)
Q Consensus         9 v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~   88 (321)
                      ||.+..   ++++.+...++..+..+.|||+|++|++..             ...+.+++.... ....... ...+..+
T Consensus         3 i~s~~~---~~~~~~~~~h~~~V~~v~fs~dg~~la~g~-------------~~~~~iw~~~~~-~~~~~~~-~~~~~~~   64 (355)
T 3vu4_A            3 LGSMIT---RNPIVPENHVSNPVTDYEFNQDQSCLILST-------------LKSFEIYNVHPV-AHIMSQE-MRHLSKV   64 (355)
T ss_dssp             -------------------CCCCCEEEECTTSSEEEEEC-------------SSEEEEEEETTE-EEEEEEE-CSCCCEE
T ss_pred             cccccc---cCCccccccCCCceEEEEECCCCCEEEEEc-------------CCEEEEEecCCc-ceeeeee-cCCeEEE
Confidence            455555   567766677788899999999999887641             011223333332 2222222 2357889


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe-CCcCeeeEEEcCCC-------------------------------
Q 020756           89 QWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKG-------------------------------  135 (321)
Q Consensus        89 ~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG-------------------------------  135 (321)
                      .|.++++.++++ +..++.+.|||.. +..+..+ +...+.++.|+|++                               
T Consensus        65 ~~~~~~~~~~~~-~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~  143 (355)
T 3vu4_A           65 RMLHRTNYVAFV-TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC  143 (355)
T ss_dssp             EECTTSSEEEEE-CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred             EEcCCCCEEEEE-ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence            999999988776 5567899999985 4555555 56678888888764                               


Q ss_pred             ----CeEEEEccCCCCCcEEEEECCCCe----------------EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeec
Q 020756          136 ----KFLCLAGFGNLPGDMAFWDYVDGK----------------QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID  193 (321)
Q Consensus       136 ----~~l~~~g~~n~~g~i~iwD~~~~~----------------~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d  193 (321)
                          .++++++ +..+|.|++||+.++.                ++..+..|  .+++++|||||++|++++.      |
T Consensus       144 ~~s~~~la~~s-g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~------d  216 (355)
T 3vu4_A          144 EFSNGLLVYSN-EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ------D  216 (355)
T ss_dssp             EEETTEEEEEE-SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET------T
T ss_pred             EEEccEEEEeC-CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC------C
Confidence                2333330 2367899999998764                15666666  7899999999999999994      9


Q ss_pred             Cc-EEEEeec-CceeEE---e-ccCceEEEEEecCCCCCCCC
Q 020756          194 NG-IKIFHHN-GSLFFK---K-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       194 ~~-v~iw~~~-g~~l~~---~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +. ++|||+. |+.+..   + |...++.++|+|++..+++.
T Consensus       217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence            98 9999995 666633   2 67799999999999887765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.72  E-value=9.8e-16  Score=144.12  Aligned_cols=206  Identities=8%  Similarity=0.012  Sum_probs=147.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeee-----cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            3 SPASVQIYACGKDLQSQPLARRS-----FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~-----~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      ..+.|++|++.+   ++.+....     ........+.|+++|+.++.. .           ....++.++.........
T Consensus       142 ~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-~-----------~d~~v~~~d~~~~~~~~~  206 (433)
T 3bws_A          142 EDEGMDVLDINS---GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQ-M-----------QANAVHVFDLKTLAYKAT  206 (433)
T ss_dssp             TSSSEEEEETTT---CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEE-G-----------GGTEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCC---CeEeeecCcccccccCCceeEEEEcCCCEEEEEE-C-----------CCCEEEEEECCCceEEEE
Confidence            356799999987   55554221     223356678999988766543 1           122366777655433222


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCC-----CCCcE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGN-----LPGDM  150 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n-----~~g~i  150 (321)
                      ...+...+.+++|+|+|+.+++. +..++.|.+||++. ..+..+ ....+..+.|+|+|++|++++.++     .++.|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i  285 (433)
T 3bws_A          207 VDLTGKWSKILLYDPIRDLVYCS-NWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRL  285 (433)
T ss_dssp             EECSSSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEE-ecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeE
Confidence            22567889999999999988765 45678999999964 445555 455688999999999999987432     36899


Q ss_pred             EEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEE-eccCceEEEEEecCCCCCC
Q 020756          151 AFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFK-KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       151 ~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~-~~~~~~~~~~w~P~~~~~~  227 (321)
                      ++||+.+++.+..+... .+..++|+|+|++++.+.+     .++.+++||+.+ +.+.. .+...+..+.|+|+...++
T Consensus       286 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-----~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          286 GIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM-----CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET-----TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE
T ss_pred             EEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec-----CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEE
Confidence            99999999877766443 7788999999988776654     489999999964 44432 3456789999999988776


Q ss_pred             CC
Q 020756          228 GD  229 (321)
Q Consensus       228 ~~  229 (321)
                      ..
T Consensus       361 ~~  362 (433)
T 3bws_A          361 VS  362 (433)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.71  E-value=3.1e-16  Score=149.88  Aligned_cols=139  Identities=13%  Similarity=0.190  Sum_probs=110.1

Q ss_pred             cCCCCCeEEEEECcCCCEEEEE--EccCCCeEEEEeCCCc---------e---eEEe--CCcCeeeEEEcCC-CCeEEEE
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVV--YGFMPASATIFNKKCR---------P---ILEL--GSGPYNTVRWNPK-GKFLCLA  141 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~--~g~~~~~i~i~d~~~~---------~---~~~~--~~~~~~~~~~sPd-G~~l~~~  141 (321)
                      +.+.+.|++++|+|+|++|+++  .+..++.|.|||+...         +   +..+  |...+.++.|+|+ +++|+++
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            3456789999999999999974  3777899999997432         1   2222  5788999999998 7889999


Q ss_pred             ccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--ecc------
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMF------  211 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~------  211 (321)
                      +   .||.|++||++++..+.....|  .+.+++|||||++|++++.      |+.++|||..+.....  .+.      
T Consensus       169 s---~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          169 L---ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ------NGTVVQYLPTLQEKKVIPCPPFYESDH  239 (434)
T ss_dssp             E---TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET------TSCEEEECTTCCEEEEECCCTTCCTTS
T ss_pred             E---CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC------CCcEEEEccCCcccccccCCcccCCCC
Confidence            8   8999999999988766555443  7899999999999999994      9999999998655422  121      


Q ss_pred             -CceEEEEEecCCCCC
Q 020756          212 -DKLFQAEWKPVSPDK  226 (321)
Q Consensus       212 -~~~~~~~w~P~~~~~  226 (321)
                       ..+..+.|.++...+
T Consensus       240 ~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             CEEEEEEEEEETTEEE
T ss_pred             ceeEEEEEEecCceEE
Confidence             278899999976554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.7e-16  Score=149.84  Aligned_cols=177  Identities=12%  Similarity=0.132  Sum_probs=121.5

Q ss_pred             CCCceEEEEEcCCcCCCCcee--------eeeccc----CccceEE--eCCCCCeeEEEEEecccCCCceeecceeEEEE
Q 020756            2 GSPASVQIYACGKDLQSQPLA--------RRSFFR----CSTVQLN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL   67 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~--------~~~~f~----~~~~~~~--Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l   67 (321)
                      +..+.|+||++.....++.+.        ...+..    .....+.  |+++|..|++..            ....|.++
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~d~~i~iw  197 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT------------NLSRVIIF  197 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE------------TTSEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe------------CCCeEEEE
Confidence            357899999995210033322        222211    1122222  566777666542            11236666


Q ss_pred             EcCCCcee-eeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe---CCcCeeeEEEc----CCCCe
Q 020756           68 TTDGTHEG-LVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWN----PKGKF  137 (321)
Q Consensus        68 ~~~g~~~~-~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~---~~~~~~~~~~s----PdG~~  137 (321)
                      +....... .+... |.+.|.+++|+|+++.|++.  ..++.|.+||++. ..+..+   +...+.++.|+    |+|++
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILG--TTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE--ETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE--cCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence            66544222 22222 67899999999999999884  6789999999964 455554   56688999665    56889


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEeeeCC----------------------------CeeeEEEccCCCEEEEEEcCCc
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----------------------------CSVTSEWSPDGRYFMTATTAPR  189 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----------------------------~~~~~~wSpdG~~l~t~~s~~r  189 (321)
                      |++++   .|+.|++||+.+++++..+..+                            .+++++|+ +|++|++++.   
T Consensus       276 l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~---  348 (437)
T 3gre_A          276 VVGGS---SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA---  348 (437)
T ss_dssp             EEEES---TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG---
T ss_pred             EEEEc---CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC---
Confidence            99998   8999999999999888777633                            26678999 8899999984   


Q ss_pred             eeecCcEEEEeec
Q 020756          190 LQIDNGIKIFHHN  202 (321)
Q Consensus       190 l~~d~~v~iw~~~  202 (321)
                         |+.|+|||+.
T Consensus       349 ---d~~i~~wd~~  358 (437)
T 3gre_A          349 ---TSSIVMFSLN  358 (437)
T ss_dssp             ---GTEEEEEETT
T ss_pred             ---CCeEEEEECC
Confidence               9999999984

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.71  E-value=5.2e-16  Score=146.53  Aligned_cols=182  Identities=11%  Similarity=0.012  Sum_probs=133.6

Q ss_pred             CCceeee-ecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCC---C--ceeeeecCCCCCeEEEEE
Q 020756           18 SQPLARR-SFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG---T--HEGLVPLRKEGPVHDVQW   90 (321)
Q Consensus        18 ~~~i~~~-~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g---~--~~~~v~l~~~~~v~~~~w   90 (321)
                      ++.+... ..+...+..+.|+| +|++|+... .|         |.  |.+++...   .  ......+.|.++|.+++|
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s-~d---------g~--v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~  119 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGS-DQ---------GV--IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITM  119 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEE-TT---------SE--EEEEEHHHHHTTCCCSCSEEEECSSCEEEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEec-CC---------ce--EEEeECcccccCcccceeeeccCCCCEEEEEE
Confidence            4555555 44567888999999 999887642 11         33  44444322   1  223444468999999999


Q ss_pred             CcCCCEEEEEEccCCCeEEEEeCC----CceeEEe--------------CCcCeeeEE--EcCCCCeEEEEccCCCCCcE
Q 020756           91 SYSGSEFAVVYGFMPASATIFNKK----CRPILEL--------------GSGPYNTVR--WNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        91 sP~g~~l~~~~g~~~~~i~i~d~~----~~~~~~~--------------~~~~~~~~~--~sPdG~~l~~~g~~n~~g~i  150 (321)
                      +|+++.|+++  ..|+.|.+||+.    +..+..+              +...+.++.  ++|++++|++++   .++.|
T Consensus       120 ~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i  194 (437)
T 3gre_A          120 IPNFDAFAVS--SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT---NLSRV  194 (437)
T ss_dssp             CTTSSEEEEE--ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE---TTSEE
T ss_pred             eCCCCEEEEE--eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe---CCCeE
Confidence            9999999885  678999999983    3222221              223445555  668999999999   89999


Q ss_pred             EEEECCCCeEEEeeeC--C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE---eccCceEEEEEecC
Q 020756          151 AFWDYVDGKQLGTTRA--E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK---KMFDKLFQAEWKPV  222 (321)
Q Consensus       151 ~iwD~~~~~~i~~~~~--~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~---~~~~~~~~~~w~P~  222 (321)
                      ++||+++++++..+..  |  .+++++|+|+|++|++++.      |+.++|||+. ++.+..   .+...+..+.|+|.
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          195 IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT------RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             EEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET------TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             EEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC------CCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            9999999999888876  3  7899999999999999994      9999999995 444433   34457999988875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.71  E-value=1.4e-15  Score=140.12  Aligned_cols=177  Identities=14%  Similarity=0.135  Sum_probs=119.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCC---CCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp---~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v   77 (321)
                      |..+.|++|.+...  ++.+.....+......+.|++   +|+.|+.. +           ....+.+++...+.. ..+
T Consensus       154 g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg-S-----------~D~TIkIWDl~TGk~l~tL  219 (356)
T 2w18_A          154 LSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEALLGT-T-----------IMNNIVIWNLKTGQLLKKM  219 (356)
T ss_dssp             STTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEEEEE-E-----------TTSEEEEEETTTCCEEEEE
T ss_pred             CCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceEEEe-c-----------CCCcEEEEECCCCcEEEEE
Confidence            45788889998331  667777778888888888888   44555442 1           122356666654422 222


Q ss_pred             ecCC--CCCeEEEEECcCCCEEEE----------EEccCCCeEEEEeCCCce-eEEe----CCcC-eeeEEEcCCCCeEE
Q 020756           78 PLRK--EGPVHDVQWSYSGSEFAV----------VYGFMPASATIFNKKCRP-ILEL----GSGP-YNTVRWNPKGKFLC  139 (321)
Q Consensus        78 ~l~~--~~~v~~~~wsP~g~~l~~----------~~g~~~~~i~i~d~~~~~-~~~~----~~~~-~~~~~~sPdG~~l~  139 (321)
                      .-++  ...+..++|+|+|..+++          +.|..|+++++||.++.. +..+    ..+. ...+..+.+|.+++
T Consensus       220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lA  299 (356)
T 2w18_A          220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAA  299 (356)
T ss_dssp             ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEE
T ss_pred             cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEE
Confidence            2121  346778899999998864          446778899999986543 3222    1121 11223333377888


Q ss_pred             EEccCCCCCcEEEEECCCCeEEEeeeCC--Cee-eEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          140 LAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~-~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +++   .|++|+|||+.+++++.++.+|  .+. .++|||||++|++++.      |++|+|||+
T Consensus       300 SgS---~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~------D~TIklWd~  355 (356)
T 2w18_A          300 AIL---TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK------DGNIFVYHY  355 (356)
T ss_dssp             EEE---TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT------TSCEEEEEE
T ss_pred             EEc---CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC------CCcEEEecC
Confidence            888   8999999999999999999866  344 4899999999999994      999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.71  E-value=4.6e-15  Score=133.02  Aligned_cols=163  Identities=18%  Similarity=0.239  Sum_probs=120.8

Q ss_pred             eeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc----eeeeecCCCCCeEEEEECcCCCE
Q 020756           21 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----EGLVPLRKEGPVHDVQWSYSGSE   96 (321)
Q Consensus        21 i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~----~~~v~l~~~~~v~~~~wsP~g~~   96 (321)
                      +.....+......+.|+++|++|+... .  |       |.  +.+++.....    .......+.+.|..+.|+|++..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~-~--d-------~~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  210 (318)
T 4ggc_A          143 VATLSGHSQEVCGLRWAPDGRHLASGG-N--D-------NL--VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN  210 (318)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEE-T--T-------SC--EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT
T ss_pred             EEEEcCccCceEEEEEcCCCCEEEEEe-c--C-------cc--eeEEECCCCcccccceeeecccCCceEEEEecCCCCc
Confidence            334444456667778888888776542 1  1       22  4444443221    11223346789999999998775


Q ss_pred             EE-EEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--Ceee
Q 020756           97 FA-VVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT  171 (321)
Q Consensus        97 l~-~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~  171 (321)
                      ++ +..+..++.+.+||.........  +...+..+.|+|+++.+++++ +..++.|+|||+.+++++..+.+|  .+++
T Consensus       211 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s-g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~  289 (318)
T 4ggc_A          211 VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLS  289 (318)
T ss_dssp             EEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEE-EcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            54 45577888999999965544333  678899999999999988764 235799999999999999999887  7899


Q ss_pred             EEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++|||||++|++++.      |+.|+|||+.
T Consensus       290 l~~spdg~~l~S~s~------D~~v~iWd~~  314 (318)
T 4ggc_A          290 LTMSPDGATVASAAA------DETLRLWRCF  314 (318)
T ss_dssp             EEECTTSSCEEEEET------TTEEEEECCS
T ss_pred             EEEcCCCCEEEEEec------CCeEEEEECC
Confidence            999999999999994      9999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.69  E-value=3.7e-16  Score=146.76  Aligned_cols=202  Identities=13%  Similarity=0.094  Sum_probs=129.2

Q ss_pred             CCceEEEEEcCCcCCCCceee-----eecccCccceEEeCC--------CCCeeEEEEEecccCCCceeecceeEEEEEc
Q 020756            3 SPASVQIYACGKDLQSQPLAR-----RSFFRCSTVQLNWNR--------GSTGLLAVAQSDVDKTNQSYYGESKLNYLTT   69 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~-----~~~f~~~~~~~~Wsp--------~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~   69 (321)
                      .++.|+||++..   ++....     ..-+...+..+.|+|        +|+.|+.. +.|         +.  +.++++
T Consensus       109 ~d~~v~lw~~~~---~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~-s~D---------~t--v~~Wd~  173 (393)
T 4gq1_A          109 QDNTVRLIITKN---ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV-GDD---------CT--LIIWRL  173 (393)
T ss_dssp             TTSCEEEEEEET---TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE-ETT---------SE--EEEEEE
T ss_pred             CCCcEEEEECCC---CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE-ECC---------Ce--EEEEEC
Confidence            467899999987   443332     333567788999998        67766654 211         22  444454


Q ss_pred             CCCceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCcee-E---------------------------E
Q 020756           70 DGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRPI-L---------------------------E  120 (321)
Q Consensus        70 ~g~~~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~~-~---------------------------~  120 (321)
                      ...........|..+|.+++|+|++. +|++  +..|+.|++||++.... .                           .
T Consensus       174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~--~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIV--GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEETTEEEEEEE--EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             CCCceeeeecCCCCCcEEEEECCCCCceEEe--cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            43334444556889999999999986 4555  57789999999853211 0                           0


Q ss_pred             eCCcCeeeEEEc-CCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--------------------CeeeEEEcc-CC
Q 020756          121 LGSGPYNTVRWN-PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------------------CSVTSEWSP-DG  178 (321)
Q Consensus       121 ~~~~~~~~~~~s-PdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--------------------~~~~~~wSp-dG  178 (321)
                      -+...+.++.|+ |||+.|++++   .++.+.+||+..++....+..+                    ....+.|+| .+
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s---~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMC---KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM  328 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEEC---TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred             cccccceeeeeecCCCCEEEEEe---CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence            134566778876 8999999998   8999999999876544433222                    112234444 34


Q ss_pred             CEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++++++++     .|+.|+|||+. |+.+  ...+...|.+++|+|++..+...
T Consensus       329 ~~~~~sgs-----~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          329 DYFATAHS-----QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             TEEEEEET-----TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEEC-----CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            44444444     49999999985 4443  44566789999999999877654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.69  E-value=6.7e-16  Score=155.11  Aligned_cols=214  Identities=7%  Similarity=0.021  Sum_probs=138.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccC---ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRC---STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~---~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      ..+.|++|++.+   ++..........   ....+.|||||++|++...   +.....+.....++++++.+.....+..
T Consensus        35 ~dg~i~~~d~~~---g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~l~~  108 (723)
T 1xfd_A           35 QKGTVRLWNVET---NTSTVLIEGKKIESLRAIRYEISPDREYALFSYN---VEPIYQHSYTGYYVLSKIPHGDPQSLDP  108 (723)
T ss_dssp             SSSCEEEBCGGG---CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEES---CCCCSSSCCCSEEEEEESSSCCCEECCC
T ss_pred             CCCCEEEEECCC---CcEEEEeccccccccccceEEECCCCCEEEEEec---CccceeecceeeEEEEECCCCceEeccC
Confidence            457899999988   554433332222   3678999999999988642   1111111122457888887654333332


Q ss_pred             C--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCe------------------eeEEEcCCCC
Q 020756           80 R--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPY------------------NTVRWNPKGK  136 (321)
Q Consensus        80 ~--~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~------------------~~~~~sPdG~  136 (321)
                      .  +...+..++|||||+.|+++..   +.|.+||+.+.....+   +...+                  ..+.|||||+
T Consensus       109 ~~~~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~  185 (723)
T 1xfd_A          109 PEVSNAKLQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT  185 (723)
T ss_dssp             TTCCSCCCSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred             CccccccccccEECCCCCEEEEEEC---CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence            1  2334889999999999999743   5899999965433332   23222                  6899999999


Q ss_pred             eEEEEccCC-------------------------------CCCcEEEEECCCCeEEEeeeC--------CCeeeEEEccC
Q 020756          137 FLCLAGFGN-------------------------------LPGDMAFWDYVDGKQLGTTRA--------ECSVTSEWSPD  177 (321)
Q Consensus       137 ~l~~~g~~n-------------------------------~~g~i~iwD~~~~~~i~~~~~--------~~~~~~~wSpd  177 (321)
                      +|++++...                               .+..|++||+.+++....+..        ..+..+.||||
T Consensus       186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD  265 (723)
T 1xfd_A          186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (723)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence            999986321                               123899999998875444432        24677999999


Q ss_pred             CCEEEEEEcCCceeecCcEEEEeecC-cee--EEec-cCce----EEEEEecCCCCCC
Q 020756          178 GRYFMTATTAPRLQIDNGIKIFHHNG-SLF--FKKM-FDKL----FQAEWKPVSPDKF  227 (321)
Q Consensus       178 G~~l~t~~s~~rl~~d~~v~iw~~~g-~~l--~~~~-~~~~----~~~~w~P~~~~~~  227 (321)
                      |++|++.....  ..+..+++||+.+ +..  ...+ ...+    ..+.|+|++..++
T Consensus       266 g~~l~~~~~~~--~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  321 (723)
T 1xfd_A          266 TKVAVTWLNRA--QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (723)
T ss_dssp             SEEEEEEEETT--SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             CeEEEEEEcCC--CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence            99987776421  1245789999854 433  2222 2222    3789999998766

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.68  E-value=6.6e-15  Score=139.98  Aligned_cols=199  Identities=12%  Similarity=0.072  Sum_probs=147.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeC--CCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-----
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN--RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-----   74 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Ws--p~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-----   74 (321)
                      +..+.|+||++.+   ++.+.....+......+.|+  +++.+++... .|         |.  +.+++......     
T Consensus       180 s~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s-~d---------~~--i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          180 STDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS-RD---------NT--LHVWKLPKESSVPDHG  244 (464)
T ss_dssp             ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEEEESSSCEEEEEEE-TT---------SC--EEEEECCCCCCC----
T ss_pred             eCCCCEEEEECCC---CcEEEEECCCCCccEEEEEecCCCCCEEEEEc-CC---------Cc--EEEeeCCCCccccccc
Confidence            4578999999998   67777766677777788888  4666665542 11         22  33444333211     


Q ss_pred             ------------------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcC
Q 020756           75 ------------------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNP  133 (321)
Q Consensus        75 ------------------~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sP  133 (321)
                                        ......|...|.++  +++++.|++.  ..++.|.+||+.. ..+..+  |...+.++.|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  320 (464)
T 3v7d_B          245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSG--SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH  320 (464)
T ss_dssp             --CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEE--ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred             ccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEE--eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence                              11223466777766  6788888884  6688999999954 455666  678899999999


Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEe-
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKK-  209 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~-  209 (321)
                      +|++|++++   .++.|++||+.+++++..+..|  .+..+.|+  +.+|++++.      |+.+++||+.. ...... 
T Consensus       321 ~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~------dg~v~vwd~~~~~~~~~~~  389 (464)
T 3v7d_B          321 ERKRCISAS---MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA------DGSIRGWDANDYSRKFSYH  389 (464)
T ss_dssp             TTTEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET------TSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEe---CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC------CCcEEEEECCCCceeeeec
Confidence            999999999   8999999999999999998876  67778887  689999994      99999999954 444443 


Q ss_pred             ccCceEEEEEecCCCCCCCCc
Q 020756          210 MFDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       210 ~~~~~~~~~w~P~~~~~~~~~  230 (321)
                      +...+..+.|+|++..++...
T Consensus       390 ~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          390 HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             CTTCCCEEEEEECSSEEEEEE
T ss_pred             CCCCccEEEEEeCCCEEEEec
Confidence            445677789999987776653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.68  E-value=9.2e-15  Score=132.49  Aligned_cols=201  Identities=9%  Similarity=-0.007  Sum_probs=139.2

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~l~~~   82 (321)
                      .+.|.+|++.+   ++.+....+..... .+.|+|+|++|++...           +...|+.++...... ......+.
T Consensus        19 ~~~v~~~d~~~---~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~-----------~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A           19 LRRISFFSTDT---LEILNQITLGYDFV-DTAITSDCSNVVVTSD-----------FCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             GTEEEEEETTT---CCEEEEEECCCCEE-EEEECSSSCEEEEEES-----------TTCEEEEEECSSSSCEEEEEEECS
T ss_pred             CCeEEEEeCcc---cceeeeEEccCCcc-eEEEcCCCCEEEEEeC-----------CCCeEEEEECCCCceeEEecccCC
Confidence            56899999988   66666666544445 9999999998877532           223578888765532 22222245


Q ss_pred             CCeEEEEECcCCCEEEEEEccCC-C--eEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCc-EEEEECC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMP-A--SATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGD-MAFWDYV  156 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~-~--~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~-i~iwD~~  156 (321)
                      .++.+++|+|+|+++++  .... +  .|.+||+... .+..+ .......+.|+|||++|++++.  .++. |.+||+.
T Consensus        84 ~~~~~~~~s~dg~~l~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--~~~~~i~~~~~~  159 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVT--VTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR--SSANTVRRFKID  159 (331)
T ss_dssp             SCCCCEEECTTSSEEEE--CCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE--TTTTEEEEEEEC
T ss_pred             CCccceEECCCCCEEEE--ecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec--CCCceEEEEEEC
Confidence            56655999999999984  3333 3  8999999654 44444 3455689999999998877752  3467 9999987


Q ss_pred             CCeEE-----Eeee-CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cce---eEEe-ccCceEEEEEecCCCC
Q 020756          157 DGKQL-----GTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSL---FFKK-MFDKLFQAEWKPVSPD  225 (321)
Q Consensus       157 ~~~~i-----~~~~-~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~---l~~~-~~~~~~~~~w~P~~~~  225 (321)
                      ....+     ..+. ......++|+|||++|+++..     .++.+.+||+. ++.   +... ....+..+.|+|++..
T Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-----~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  234 (331)
T 3u4y_A          160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL-----IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGST  234 (331)
T ss_dssp             TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET-----TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred             CCCcEeecCCccccCCCCccceEECCCCCEEEEEeC-----CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCE
Confidence            53222     1122 236778999999998877774     37889999994 555   4332 3346778999999986


Q ss_pred             CCC
Q 020756          226 KFG  228 (321)
Q Consensus       226 ~~~  228 (321)
                      ++-
T Consensus       235 l~v  237 (331)
T 3u4y_A          235 VYV  237 (331)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            663

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.5e-15  Score=154.64  Aligned_cols=184  Identities=20%  Similarity=0.263  Sum_probs=135.7

Q ss_pred             ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcC--CCEEEEEEc
Q 020756           25 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS--GSEFAVVYG  102 (321)
Q Consensus        25 ~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~--g~~l~~~~g  102 (321)
                      ..+...+..+.|+|+|++|++...          .|...+|.+.............|.++|.+++|+|+  |+.|+++  
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~----------dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~--   73 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSS----------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC--   73 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEET----------TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEE--
T ss_pred             ccCcceeEEEEECCCCCeEEEEEC----------CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEE--
Confidence            345677889999999998876521          13334454432122122223358899999999998  8888885  


Q ss_pred             cCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcCC--CCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCC--Ceee
Q 020756          103 FMPASATIFNKKCR---PILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAE--CSVT  171 (321)
Q Consensus       103 ~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~--~~~~  171 (321)
                      ..|+.|.+||+...   .+..+  |...+.++.|+|+  |++|++++   .+|.|++||+.++.  ....+..+  .+..
T Consensus        74 s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs---~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe---CCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            66899999999655   34444  7889999999999  99999999   89999999998762  22333333  7899


Q ss_pred             EEEcc-------------CCCEEEEEEcCCceeecCcEEEEeecCc-----ee--EEeccCceEEEEEecC---CCCCCC
Q 020756          172 SEWSP-------------DGRYFMTATTAPRLQIDNGIKIFHHNGS-----LF--FKKMFDKLFQAEWKPV---SPDKFG  228 (321)
Q Consensus       172 ~~wSp-------------dG~~l~t~~s~~rl~~d~~v~iw~~~g~-----~l--~~~~~~~~~~~~w~P~---~~~~~~  228 (321)
                      +.|+|             ||.+|++++.      |+.|+|||+...     .+  ...|...+..+.|+|+   +..+++
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s  224 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGA------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  224 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEET------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             EEecCcccccccccccCCCCCEEEEEEC------CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence            99999             6999999995      999999999542     22  3456788999999999   565655


Q ss_pred             C
Q 020756          229 D  229 (321)
Q Consensus       229 ~  229 (321)
                      .
T Consensus       225 ~  225 (753)
T 3jro_A          225 V  225 (753)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.5e-15  Score=155.95  Aligned_cols=177  Identities=11%  Similarity=0.149  Sum_probs=133.6

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  106 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~  106 (321)
                      +...+..+.|+|+|++|++.. .|         |  .+++++..+. +....+.|..+|.+++|+| |++|+++  ..|+
T Consensus        16 h~~~V~~lafspdg~~lAsgs-~D---------g--~I~lw~~~~~-~~~~~~~~~~~V~~l~fsp-g~~L~S~--s~D~   79 (902)
T 2oaj_A           16 MSSKPIAAAFDFTQNLLAIAT-VT---------G--EVHIYGQQQV-EVVIKLEDRSAIKEMRFVK-GIYLVVI--NAKD   79 (902)
T ss_dssp             CSSCEEEEEEETTTTEEEEEE-TT---------S--EEEEECSTTC-EEEEECSSCCCEEEEEEET-TTEEEEE--ETTC
T ss_pred             CCCCcEEEEECCCCCEEEEEe-CC---------C--EEEEEeCCCc-EEEEEcCCCCCEEEEEEcC-CCEEEEE--ECcC
Confidence            456788999999999887752 11         2  2555565554 4445566788999999999 8877774  6689


Q ss_pred             eEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE-----------eeeCC--Ceee
Q 020756          107 SATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-----------TTRAE--CSVT  171 (321)
Q Consensus       107 ~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~-----------~~~~~--~~~~  171 (321)
                      .|+|||+.. +.+..+ +...+.++.|+|+|++|++++   .+|.|++||++++++..           .+..|  .+.+
T Consensus        80 ~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs---~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s  156 (902)
T 2oaj_A           80 TVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGL---QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS  156 (902)
T ss_dssp             EEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEE---TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred             eEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEc---CCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence            999999954 455555 677899999999999999998   89999999999887641           12233  7889


Q ss_pred             EEEccC-CCEEEEEEcCCceeecCcEEEEeecCce-e--EEec------------------cCceEEEEEecCCCCCCCC
Q 020756          172 SEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSL-F--FKKM------------------FDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       172 ~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~~-l--~~~~------------------~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++|+|+ +..|++++.      |+.+ |||+.... +  +..+                  ...|..++|+|++..+++.
T Consensus       157 l~~sp~~~~~l~~g~~------dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          157 IQWNPRDIGTVLISYE------YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             EEEETTEEEEEEEECS------SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             EEEccCCCCEEEEEeC------CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence            999996 567777773      8889 99996543 3  2222                  3569999999998877755

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.67  E-value=1.4e-15  Score=153.29  Aligned_cols=185  Identities=15%  Similarity=0.187  Sum_probs=129.2

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC------------------------CC
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE------------------------GP   84 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~------------------------~~   84 (321)
                      .....+.|||||++|++....+    +..  +...|++++..++....+...+.                        ..
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d----~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKD----SDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG  110 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCS----SCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred             CCCCCceEecCCCEEEEEeccC----CCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence            3466899999999998864211    110  12358888887664443332222                        23


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      |.+++|||||++|++...   +.|.+||+.+.   .+..+  +...+..+.|||||++|++++    +++|++||+.+++
T Consensus       111 v~~~~~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~g~  183 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR----GRNLWVIDLASGR  183 (741)
T ss_dssp             SCCCEECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE----TTEEEEEETTTTE
T ss_pred             cceeEECCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe----CCcEEEEecCCCC
Confidence            789999999999999743   79999999766   55555  557789999999999999986    3589999999887


Q ss_pred             EEEeeeCCC------------------eeeEEEccCCCEEEEEEcCCc-------------------ee--------ecC
Q 020756          160 QLGTTRAEC------------------SVTSEWSPDGRYFMTATTAPR-------------------LQ--------IDN  194 (321)
Q Consensus       160 ~i~~~~~~~------------------~~~~~wSpdG~~l~t~~s~~r-------------------l~--------~d~  194 (321)
                      .......+.                  +..+.|||||++|++++....                   ++        ...
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            665544331                  367999999999999874100                   00        001


Q ss_pred             cEEEEeecC-ceeEE-----eccCceEEEEEecCCCCCC
Q 020756          195 GIKIFHHNG-SLFFK-----KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       195 ~v~iw~~~g-~~l~~-----~~~~~~~~~~w~P~~~~~~  227 (321)
                      .+.+||+.+ ..+..     .+...+..+.| |++..++
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~  301 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLS  301 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence            688888865 43322     23456889999 9988776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.66  E-value=3.2e-15  Score=150.00  Aligned_cols=200  Identities=13%  Similarity=0.095  Sum_probs=134.8

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC-----Cceeeeec
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-----THEGLVPL   79 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g-----~~~~~v~l   79 (321)
                      +.|.||++.+   ++. ............+.|||||++|++..             ...|+++++.+     +....+..
T Consensus       101 ~~i~~~d~~~---~~~-~~l~~~~~~~~~~~~SpdG~~la~~~-------------~~~i~v~~~~~~~~~~g~~~~~~~  163 (706)
T 2z3z_A          101 GGLVGFDMLA---RKV-TYLFDTNEETASLDFSPVGDRVAYVR-------------NHNLYIARGGKLGEGMSRAIAVTI  163 (706)
T ss_dssp             TEEEEEETTT---TEE-EEEECCTTCCTTCEECTTSSEEEEEE-------------TTEEEEEECBCTTSCCCCCEESCS
T ss_pred             CEEEEEECCC---Cce-EEccCCcccccCCcCCCCCCEEEEEE-------------CCeEEEEecCcccccCCCcEEecc
Confidence            6789999977   433 33333455677899999999998851             12478888765     44444433


Q ss_pred             CCCCC--------------eEEEEECcCCCEEEEEEc-------------------------------cCCCeEEEEeCC
Q 020756           80 RKEGP--------------VHDVQWSYSGSEFAVVYG-------------------------------FMPASATIFNKK  114 (321)
Q Consensus        80 ~~~~~--------------v~~~~wsP~g~~l~~~~g-------------------------------~~~~~i~i~d~~  114 (321)
                      .....              +.++.|||||++|+++.-                               ..+..|.+||+.
T Consensus       164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence            33332              489999999999998741                               123479999997


Q ss_pred             CceeEEe-----CCcCeeeEEEcCCCCeEEEEccCC--CCCcEEEEECCCC-eEEEeee--CC----CeeeEEEcc--CC
Q 020756          115 CRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGN--LPGDMAFWDYVDG-KQLGTTR--AE----CSVTSEWSP--DG  178 (321)
Q Consensus       115 ~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n--~~g~i~iwD~~~~-~~i~~~~--~~----~~~~~~wSp--dG  178 (321)
                      +.....+     +...+..+.|||||++|++++...  ....|++||+.++ .......  ..    .+..+.|||  ||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          244 TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC
Confidence            6654443     234578999999999999876211  1248999999998 4332221  11    135689999  99


Q ss_pred             CEEEEEEcCCceeecCcEEEEee--cCceeEE--eccCceEE-EEEecCCCCCC
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHH--NGSLFFK--KMFDKLFQ-AEWKPVSPDKF  227 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~--~g~~l~~--~~~~~~~~-~~w~P~~~~~~  227 (321)
                      ++|+++.      .++.++||.+  +|..+..  .+...+.. +.|+|++..++
T Consensus       324 ~~l~~~~------~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~  371 (706)
T 2z3z_A          324 QFIWQSR------RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY  371 (706)
T ss_dssp             EEEEEEC------TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEE
T ss_pred             EEEEEEc------cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEE
Confidence            9887776      3777888877  4555433  23345655 79999987665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.66  E-value=4.9e-14  Score=128.30  Aligned_cols=202  Identities=9%  Similarity=0.015  Sum_probs=146.6

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~~   82 (321)
                      .+.|.+|+..+   ++.+...... .....+.|+++|+++++...           +...|+.++..... ...+.+...
T Consensus        68 ~~~v~~~d~~~---~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~-----------~~~~v~~~d~~~~~~~~~~~~~~~  132 (353)
T 3vgz_A           68 GGVVYRLDPVT---LEVTQAIHND-LKPFGATINNTTQTLWFGNT-----------VNSAVTAIDAKTGEVKGRLVLDDR  132 (353)
T ss_dssp             SEEEEEECTTT---CCEEEEEEES-SCCCSEEEETTTTEEEEEET-----------TTTEEEEEETTTCCEEEEEESCCC
T ss_pred             CccEEEEcCCC---CeEEEEEecC-CCcceEEECCCCCEEEEEec-----------CCCEEEEEeCCCCeeEEEEecCCC
Confidence            56899999887   5666555543 34678999999998877531           12247777775442 234444322


Q ss_pred             C--------CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           83 G--------PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        83 ~--------~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      .        .++++.|+|+|+++++.....++.|.+||.... .+..+.  ......+.|+|+|++|++++   .++.|.
T Consensus       133 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~i~  209 (353)
T 3vgz_A          133 KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTN---ADGELI  209 (353)
T ss_dssp             CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEEC---TTSEEE
T ss_pred             ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEc---CCCeEE
Confidence            1        268899999999988875345778999999654 445553  34478899999999999987   678999


Q ss_pred             EEECCCCeEEEeeeC------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccCceEEEEEecCCC
Q 020756          152 FWDYVDGKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       152 iwD~~~~~~i~~~~~------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~~~~~~~w~P~~~  224 (321)
                      +||+.+++.+..+..      +.+..++|+|||++|+++..     .++.+.+||. +++.+.......-..+.|+|+..
T Consensus       210 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~  284 (353)
T 3vgz_A          210 TIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-----KAAEVLVVDTRNGNILAKVAAPESLAVLFNPARN  284 (353)
T ss_dssp             EEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-----SSSEEEEEETTTCCEEEEEECSSCCCEEEETTTT
T ss_pred             EEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-----CCCEEEEEECCCCcEEEEEEcCCCceEEECCCCC
Confidence            999999988776653      14567999999999888774     3689999999 45655444444456789999988


Q ss_pred             CCCC
Q 020756          225 DKFG  228 (321)
Q Consensus       225 ~~~~  228 (321)
                      .+|-
T Consensus       285 ~l~v  288 (353)
T 3vgz_A          285 EAYV  288 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=7.2e-14  Score=127.20  Aligned_cols=203  Identities=6%  Similarity=-0.023  Sum_probs=146.5

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCc---------cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCS---------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE   74 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~---------~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~   74 (321)
                      .+.|.+|++.+   ++.+.........         ...+.|+|+|+.+++....          ....|+.++..... 
T Consensus       110 ~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~~i~~~d~~~~~-  175 (353)
T 3vgz_A          110 NSAVTAIDAKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------KESVIWVVDGGNIK-  175 (353)
T ss_dssp             TTEEEEEETTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------SSCEEEEEETTTTE-
T ss_pred             CCEEEEEeCCC---CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------CCceEEEEcCCCCc-
Confidence            56899999988   6666655543221         4668999999998775310          12347788876553 


Q ss_pred             eeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe------CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           75 GLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL------GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        75 ~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~------~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      ....+. +...++++.|+|+|+.+++.  ..++.+.+||.... .+..+      +......+.|+|+|++|++++.  .
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~  251 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTT--NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--K  251 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEE--CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--S
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEE--cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--C
Confidence            233333 44558899999999998886  45789999999654 33333      1334667999999998888762  3


Q ss_pred             CCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEec-cCceEEEEEecCCC
Q 020756          147 PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM-FDKLFQAEWKPVSP  224 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~-~~~~~~~~w~P~~~  224 (321)
                      ++.|.+||+.+++.+..+.......+.|+|||++++++..     .++.+.+||.. ++.+.... ......+.|+|++.
T Consensus       252 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  326 (353)
T 3vgz_A          252 AAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHR-----QAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGK  326 (353)
T ss_dssp             SSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEET-----TTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSC
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEEC-----CCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCC
Confidence            4899999999998888777666677999999998877774     38899999995 55553332 34678899999988


Q ss_pred             CCCCC
Q 020756          225 DKFGD  229 (321)
Q Consensus       225 ~~~~~  229 (321)
                      .+|-.
T Consensus       327 ~l~v~  331 (353)
T 3vgz_A          327 TLYVS  331 (353)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.65  E-value=1.9e-15  Score=141.87  Aligned_cols=176  Identities=13%  Similarity=0.143  Sum_probs=114.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-------   74 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-------   74 (321)
                      |.++.||||++..   +.++....-+......+.|+|++..+++....|         |.  +.+++......       
T Consensus       163 s~D~tv~~Wd~~~---~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---------~~--v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          163 GDDCTLIIWRLTD---EGPILAGYPLSSPGISVQFRPSNPNQLIVGERN---------GN--IRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             ETTSEEEEEEEET---TEEEEEEEECSSCEEEEEEETTEEEEEEEEETT---------SE--EEEEETTCCC--------
T ss_pred             ECCCeEEEEECCC---CceeeeecCCCCCcEEEEECCCCCceEEecCCC---------CE--EEEEECCCCccccccccc
Confidence            4678999999988   666666666677888999999997666654322         22  22333222110       


Q ss_pred             ------------------eeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeCCCce-eEEe--CCcC-------
Q 020756           75 ------------------GLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGP-------  125 (321)
Q Consensus        75 ------------------~~v~l~~~~~v~~~~ws-P~g~~l~~~~g~~~~~i~i~d~~~~~-~~~~--~~~~-------  125 (321)
                                        ......|...|..+.|+ |||+.|+..  ..++.+.+||+.... ...+  +...       
T Consensus       229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~--s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM--CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE--CTTSEEEEEEC-------------------CCS
T ss_pred             CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE--eCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence                              00112366788899986 899998884  778999999985321 1111  1111       


Q ss_pred             -----------eeeEEEcC-CCC-eEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCce
Q 020756          126 -----------YNTVRWNP-KGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRL  190 (321)
Q Consensus       126 -----------~~~~~~sP-dG~-~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl  190 (321)
                                 .....|+| .++ +++.++   .||.|+|||+.+++++..+..+  .+..++|||||++||+++     
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs---~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as-----  378 (393)
T 4gq1_A          307 PNVQGISLFPSLLGACPHPRYMDYFATAHS---QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT-----  378 (393)
T ss_dssp             CSEEEECSSCCSSCCEECSSCTTEEEEEET---TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE-----
T ss_pred             cccccccccCcceeEEEccCCCCEEEEEEC---CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe-----
Confidence                       12233444 344 445555   7899999999988766554443  789999999999999998     


Q ss_pred             eecCcEEEEeecC
Q 020756          191 QIDNGIKIFHHNG  203 (321)
Q Consensus       191 ~~d~~v~iw~~~g  203 (321)
                        ++++.||.+.|
T Consensus       379 --~~Gv~lvrL~g  389 (393)
T 4gq1_A          379 --EGSVLLTRLMG  389 (393)
T ss_dssp             --SSEEEEEEEGG
T ss_pred             --CCCeEEEEEeC
Confidence              88999998754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.65  E-value=6.6e-15  Score=154.79  Aligned_cols=179  Identities=12%  Similarity=0.069  Sum_probs=134.9

Q ss_pred             ccceEEeC-CCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCCe
Q 020756           30 STVQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPAS  107 (321)
Q Consensus        30 ~~~~~~Ws-p~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~-~v~~~~wsP~g~~l~~~~g~~~~~  107 (321)
                      ....+.|| |+|+.|++..             ...++.++..+.....+. .+.+ .+.+++|+ ||+.|+++..  +..
T Consensus       297 ~v~~~~~S~pdG~~la~~~-------------~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~s-dg~~l~~~s~--~~~  359 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-------------RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGD-TKVAFIHGTR--EGD  359 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-------------TTEEEEECTTSSBEEECS-CCSCEEEEEECSS-SEEEEEEEET--TEE
T ss_pred             ccceeeecCCCCCEEEEEE-------------cCEEEEEcCCCCceEEcc-CCCcceEEeeeEc-CCCeEEEEEC--CCc
Confidence            46789999 9999998863             124777877665433332 3555 88999999 9999998743  567


Q ss_pred             EE-EEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEE
Q 020756          108 AT-IFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFM  182 (321)
Q Consensus       108 i~-i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~  182 (321)
                      +. +||+.+.....+  +...+..+.|||||++|++++   .++.|++||+.+++.......+  .+..++|||||++|+
T Consensus       360 l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~---~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          360 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA  436 (1045)
T ss_dssp             EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             eEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC---CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEE
Confidence            88 899877655555  456788999999999999998   7889999999999877766444  568899999999999


Q ss_pred             EEEcCC----ceeecCcEEEEeecCcee--EEeccCceEEEEEecCCCCCCC
Q 020756          183 TATTAP----RLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       183 t~~s~~----rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      +++...    ....++.+++||+.+..+  ...+...+..+.|+|++..++.
T Consensus       437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          437 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             EEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence            887410    000135899999976544  2235557888999999987764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.64  E-value=6.6e-14  Score=128.12  Aligned_cols=206  Identities=14%  Similarity=0.168  Sum_probs=131.7

Q ss_pred             CCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            3 SPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      ..+.|.+|++..   +.  .+............+.|+|+|++|++....         .+...+|.+..++.......+.
T Consensus        61 ~~~~v~~~~~~~---g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~---------~~~v~v~~~~~~g~~~~~~~~~  128 (347)
T 3hfq_A           61 DEGGIAAWQIDG---QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH---------KGTAEVMKIAADGALTLTDTVQ  128 (347)
T ss_dssp             TEEEEEEEEEET---TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT---------TTEEEEEEECTTSCEEEEEEEE
T ss_pred             CCceEEEEEecC---CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC---------CCEEEEEEeCCCCCeeecceee
Confidence            357899999965   33  333322234567789999999998875310         0233345554444322222222


Q ss_pred             C----------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeE---E--eC-CcCeeeEEEcCCCCeEEEEcc
Q 020756           81 K----------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL---E--LG-SGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        81 ~----------~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~---~--~~-~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      .          ...+++++|+|+|+ ++++ +..++.+.+||+. ...+.   .  +. ......+.|+|||++|++++.
T Consensus       129 ~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          129 HSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             CCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCCCccccCCCceEEEECCCCc-EEEE-eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC
Confidence            2          12488999999999 5544 4556799999986 32222   2  22 235677999999998887652


Q ss_pred             CCCCCcEEEEECCC--CeE--EEeeeC--------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Cce--eE
Q 020756          144 GNLPGDMAFWDYVD--GKQ--LGTTRA--------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL--FF  207 (321)
Q Consensus       144 ~n~~g~i~iwD~~~--~~~--i~~~~~--------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~--l~  207 (321)
                        .++.|.+||++.  ++.  +..+..        ..+..++|||||++|+++..     .++.+.+|++.  |.+  +.
T Consensus       207 --~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~-----~~~~v~v~~~~~~g~~~~~~  279 (347)
T 3hfq_A          207 --LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR-----GYNTLAVFAVTADGHLTLIQ  279 (347)
T ss_dssp             --TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE-----TTTEEEEEEECGGGCEEEEE
T ss_pred             --CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC-----CCCEEEEEEECCCCcEEEeE
Confidence              468999999874  542  233222        12667999999999866653     37899999985  332  22


Q ss_pred             Ee--ccCceEEEEEecCCCCCCCC
Q 020756          208 KK--MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       208 ~~--~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ..  +...+..++|+|++..++..
T Consensus       280 ~~~~~~~~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          280 QISTEGDFPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             EEECSSSCCCEEEECTTSSEEEEE
T ss_pred             EEecCCCCcCeEEECCCCCEEEEE
Confidence            22  23357899999999877754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.64  E-value=3.9e-14  Score=128.13  Aligned_cols=205  Identities=7%  Similarity=0.081  Sum_probs=133.9

Q ss_pred             CCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeec
Q 020756            3 SPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l   79 (321)
                      ..+.|+||++...  ++  .+... ........+.|+|+|++|++....     +    +...+|.++..++... ...+
T Consensus        13 ~~~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~-----~----~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A           13 ESQQIHVWNLNHE--GALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRP-----E----FRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             GGTEEEEEEECTT--SCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETT-----T----TEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCeEEEEEECCC--CcEEEeeeE-ecCCCCceEEECCCCCEEEEeecC-----C----CeEEEEEecCCCCceeecccc
Confidence            4678999999641  22  22222 223456679999999998876321     0    2333444543233222 2223


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC---C-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---C-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~---~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      ...+.+.+++|+|+|++|++. +..++.+.+||+.   . ..+..+ ....+..+.|+|+|++|++++.  .++.|.+||
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d  157 (343)
T 1ri6_A           81 ALPGSLTHISTDHQGQFVFVG-SYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL--KQDRICLFT  157 (343)
T ss_dssp             ECSSCCSEEEECTTSSEEEEE-ETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG--GGTEEEEEE
T ss_pred             ccCCCCcEEEEcCCCCEEEEE-ecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC--CCCEEEEEE
Confidence            334578999999999988776 3457799999982   2 233334 3456888999999998888763  358999999


Q ss_pred             CCC-CeEEE----eeeC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---Ccee--EEec--------cCc
Q 020756          155 YVD-GKQLG----TTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLF--FKKM--------FDK  213 (321)
Q Consensus       155 ~~~-~~~i~----~~~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~l--~~~~--------~~~  213 (321)
                      +.+ ++...    ....   ..+..++|+|||++|+++..     .++.+.+|+++   |.+.  ....        ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~-----~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  232 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE-----LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  232 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET-----TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC-----CCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence            987 64322    2222   26778999999998887764     38899999984   3321  1111        124


Q ss_pred             eEEEEEecCCCCCC
Q 020756          214 LFQAEWKPVSPDKF  227 (321)
Q Consensus       214 ~~~~~w~P~~~~~~  227 (321)
                      +..+.|+|++..++
T Consensus       233 ~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          233 AADIHITPDGRHLY  246 (343)
T ss_dssp             EEEEEECTTSSEEE
T ss_pred             ccceEECCCCCEEE
Confidence            56799999998776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.63  E-value=2.9e-14  Score=129.20  Aligned_cols=204  Identities=12%  Similarity=0.062  Sum_probs=136.9

Q ss_pred             CceEEEEEcCCcCCCCc-eeeeecccCccce-EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            4 PASVQIYACGKDLQSQP-LARRSFFRCSTVQ-LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~-i~~~~~f~~~~~~-~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      .+.|.+|++.+   ++. +...... ..... +.|+|+|++|++. .    ..+    +...|+.++..... ....+..
T Consensus        61 ~~~i~~~d~~~---~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~----~~~----~~~~i~v~d~~~~~-~~~~~~~  126 (331)
T 3u4y_A           61 CQTLVQIETQL---EPPKVVAIQEG-QSSMADVDITPDDQFAVTV-T----GLN----HPFNMQSYSFLKNK-FISTIPI  126 (331)
T ss_dssp             TCEEEEEECSS---SSCEEEEEEEC-SSCCCCEEECTTSSEEEEC-C----CSS----SSCEEEEEETTTTE-EEEEEEC
T ss_pred             CCeEEEEECCC---CceeEEecccC-CCCccceEECCCCCEEEEe-c----CCC----CcccEEEEECCCCC-eEEEEEC
Confidence            45789999887   555 4444443 34555 9999999999832 1    010    11147778876552 2223344


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCe-EEEEeCCCc-ee-----EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPAS-ATIFNKKCR-PI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~-i~i~d~~~~-~~-----~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ....++++|+|+|++++++.. .+.. +.+|++... .+     ..+ .......+.|+|+|++|++++.  .++.|.+|
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~-~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~  203 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDR-SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGIL  203 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEE-TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEE
T ss_pred             CCCccceEECCCCCEEEEEec-CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC--CCCeEEEE
Confidence            556799999999998777633 3456 999998532 11     122 3445788999999998877662  46899999


Q ss_pred             ECCCCeE---EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cce--eEEe--c----cC---ceEEE
Q 020756          154 DYVDGKQ---LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSL--FFKK--M----FD---KLFQA  217 (321)
Q Consensus       154 D~~~~~~---i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~--l~~~--~----~~---~~~~~  217 (321)
                      |+.+++.   +..+... .+..++|||||++|+++..     .++.+.+||.. |++  +...  .    ..   ....+
T Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (331)
T 3u4y_A          204 ETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE-----STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQM  278 (331)
T ss_dssp             ECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS-----SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCE
T ss_pred             ECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc-----CCCEEEEEECCCCceeeecccccccccCCCCcccccce
Confidence            9998876   7666654 6778999999998887764     37789999986 444  1111  1    11   22447


Q ss_pred             EEecCCCCCCCC
Q 020756          218 EWKPVSPDKFGD  229 (321)
Q Consensus       218 ~w~P~~~~~~~~  229 (321)
                      .|+|++..++..
T Consensus       279 ~~spdg~~l~v~  290 (331)
T 3u4y_A          279 ALNKTETKLFIS  290 (331)
T ss_dssp             EECTTSSEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            999999887643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=6.2e-15  Score=148.57  Aligned_cols=199  Identities=7%  Similarity=-0.018  Sum_probs=136.4

Q ss_pred             ceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            5 ASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      +.|.+|++..   +.  .+.+..........+.|||||++|++..             ...|++++..++....+...+.
T Consensus       129 ~~i~~~d~~~---~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-------------~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          129 GELYLYDLKQ---EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-------------GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             TEEEEEESSS---CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-------------TTEEEEEETTTTEEEECCCCCC
T ss_pred             CcEEEEECCC---CCcceEEEcccCCcccccccCCCCCCEEEEEe-------------CCcEEEEecCCCCEEEeccCCc
Confidence            5789999987   42  3444444456678899999999998862             1158888887765544443333


Q ss_pred             CC----------------eEEEEECcCCCEEEEEEccCC-----------------------------C--eEEEEeCCC
Q 020756           83 GP----------------VHDVQWSYSGSEFAVVYGFMP-----------------------------A--SATIFNKKC  115 (321)
Q Consensus        83 ~~----------------v~~~~wsP~g~~l~~~~g~~~-----------------------------~--~i~i~d~~~  115 (321)
                      ..                +.++.|||||++|+++.....                             .  .|.+||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            32                478999999999998742210                             1  678889876


Q ss_pred             -ceeEEe-----CCcCeeeEEEcCCCCeEEEEcc--CCCCCcEEEEECCCCeEEEeeeCC------CeeeEEEccCCCEE
Q 020756          116 -RPILEL-----GSGPYNTVRWNPKGKFLCLAGF--GNLPGDMAFWDYVDGKQLGTTRAE------CSVTSEWSPDGRYF  181 (321)
Q Consensus       116 -~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~--~n~~g~i~iwD~~~~~~i~~~~~~------~~~~~~wSpdG~~l  181 (321)
                       .....+     +...+..+.| |||++|+++..  ...+..|++||+.++++...+..+      .+..+.|||||+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence             544443     3456788999 99999998753  223578999999998766555432      23578999999976


Q ss_pred             EEEEcCCceeecCcEEEEee--cCcee--EEeccCceEEE-EEecCCCCCC
Q 020756          182 MTATTAPRLQIDNGIKIFHH--NGSLF--FKKMFDKLFQA-EWKPVSPDKF  227 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~--~g~~l--~~~~~~~~~~~-~w~P~~~~~~  227 (321)
                      +++.      .++.++||.+  +|. +  ...+...+..+ .|+|+...++
T Consensus       352 ~~~~------~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~  395 (741)
T 2ecf_A          352 WSSE------RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAY  395 (741)
T ss_dssp             EEEC------TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEE
T ss_pred             EEec------CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEE
Confidence            6665      3666677765  465 3  22334466676 5999987664

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.63  E-value=1.7e-14  Score=133.56  Aligned_cols=211  Identities=10%  Similarity=0.012  Sum_probs=140.7

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccce-----EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQ-----LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~-----~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      |+...+|-.+..  +.++.+.+........     ..|||||++|++....    .     |..+||.++..+....++.
T Consensus         8 ~~~~~~~~~~~~--g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~----~-----g~~~l~~~d~~~g~~~~lt   76 (388)
T 3pe7_A            8 PLTFDTYQDAST--GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF----D-----GPWNYYLLDLNTQVATQLT   76 (388)
T ss_dssp             ECCCEEEECTTT--CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT----T-----SSCEEEEEETTTCEEEECC
T ss_pred             cccceEEecCCC--CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC----C-----CCceEEEEeCCCCceEEee
Confidence            445566766652  5667776655544444     7899999999987421    1     3446899998887555554


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE---EeCCcCeeeE--EEcCCCCeEEEEcc----------
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGSGPYNTV--RWNPKGKFLCLAGF----------  143 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~---~~~~~~~~~~--~~sPdG~~l~~~g~----------  143 (321)
                      -.+...+..+.|||||+.|+++.  .+..+.+||+.+....   .++...+...  .++|+|++|+....          
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~--~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVK--DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEE--TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             eCCCCCccceEEcCCCCEEEEEe--CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence            44445555788999999999874  4568999999654332   3344434333  45999999875310          


Q ss_pred             ---------CCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCceeEEe--c
Q 020756          144 ---------GNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--M  210 (321)
Q Consensus       144 ---------~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~  210 (321)
                               .+.+..|++||+.+++........ .+..+.||| ||++|+++...+.......|.+++..|..+...  +
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  234 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH  234 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred             cchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence                     123478999999988655544443 678899999 999999988532211244788888876544222  2


Q ss_pred             c--CceEEEEEecCCCCCC
Q 020756          211 F--DKLFQAEWKPVSPDKF  227 (321)
Q Consensus       211 ~--~~~~~~~w~P~~~~~~  227 (321)
                      .  ..+..+.|+|++..++
T Consensus       235 ~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          235 AEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             CTTEEEEEEEECTTSSCEE
T ss_pred             CCCcccccceECCCCCEEE
Confidence            2  2467889999998774

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.63  E-value=4.3e-14  Score=133.91  Aligned_cols=192  Identities=10%  Similarity=0.180  Sum_probs=141.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee---eee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~---~v~   78 (321)
                      +..+.|+||++.+   ++.+............+.|++  ..++.. ..|         |.  +.+++.......   ...
T Consensus       190 ~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~d---------g~--i~vwd~~~~~~~~~~~~~  252 (435)
T 1p22_A          190 SSDSTVRVWDVNT---GEMLNTLIHHCEAVLHLRFNN--GMMVTC-SKD---------RS--IAVWDMASPTDITLRRVL  252 (435)
T ss_dssp             ETTSCEEEEESSS---CCEEEEECCCCSCEEEEECCT--TEEEEE-ETT---------SC--EEEEECSSSSCCEEEEEE
T ss_pred             cCCCeEEEEECCC---CcEEEEEcCCCCcEEEEEEcC--CEEEEe-eCC---------Cc--EEEEeCCCCCCceeeeEe
Confidence            3567899999988   677777666677788888874  344332 211         22  455555443222   344


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      ..|.+.|.++.|  +++.|++.  ..++.+.+||++. ..+..+  |...+.++.|  ++++|++++   .+|.|++||+
T Consensus       253 ~~~~~~v~~~~~--~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~---~dg~i~iwd~  323 (435)
T 1p22_A          253 VGHRAAVNVVDF--DDKYIVSA--SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS---SDNTIRLWDI  323 (435)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEE--ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE---TTSCEEEEET
T ss_pred             cCCCCcEEEEEe--CCCEEEEE--eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe---CCCeEEEEEC
Confidence            568899999999  77888874  6689999999954 455555  6788999988  478999998   8999999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-c---------ee--EEeccCceEEEEEec
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-S---------LF--FKKMFDKLFQAEWKP  221 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~---------~l--~~~~~~~~~~~~w~P  221 (321)
                      ++++++..+..|  .+..++|  ||.+|++++.      |+.|+|||+.. .         .+  ...|...+..+.|  
T Consensus       324 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--  393 (435)
T 1p22_A          324 ECGACLRVLEGHEELVRCIRF--DNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--  393 (435)
T ss_dssp             TTCCEEEEECCCSSCEEEEEC--CSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--
T ss_pred             CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC------CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--
Confidence            999999988876  5777777  8999999994      99999999842 2         33  4457778999999  


Q ss_pred             CCCCCCCC
Q 020756          222 VSPDKFGD  229 (321)
Q Consensus       222 ~~~~~~~~  229 (321)
                      ++..+++.
T Consensus       394 ~~~~l~s~  401 (435)
T 1p22_A          394 DEFQIVSS  401 (435)
T ss_dssp             CSSCEEEC
T ss_pred             CCCEEEEE
Confidence            55556654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.63  E-value=7.8e-14  Score=125.79  Aligned_cols=200  Identities=11%  Similarity=0.098  Sum_probs=137.3

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccC--ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeec
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRC--STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~--~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l   79 (321)
                      ..+.|.+|++.+   ++.+........  ....+.|+|+|+.+++...           ....|+.++..... ...+.+
T Consensus         9 ~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~-----------~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            9 RPDKLVVIDTEK---MAVDKVITIADAGPTPMVPMVAPGGRIAYATVN-----------KSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             TTTEEEEEETTT---TEEEEEEECTTCTTCCCCEEECTTSSEEEEEET-----------TTTEEEEEETTTCCEEEEEEC
T ss_pred             CCCeEEEEECCC---CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC-----------CCCeEEEEECCCCCeEeeEEc
Confidence            468899999988   666665554332  4678999999998877531           12247777775442 223443


Q ss_pred             CCC----CCeEEEEECcCCCEEEEEEcc----------CCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEcc
Q 020756           80 RKE----GPVHDVQWSYSGSEFAVVYGF----------MPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        80 ~~~----~~v~~~~wsP~g~~l~~~~g~----------~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      .+.    ..+.+++|+|+|++++++...          .++.|.+||+... .+..+ ....+..+.|+|+|++|++++ 
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-  153 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-  153 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC-
Confidence            321    167789999999998886311          4689999999654 44444 345677899999999988873 


Q ss_pred             CCCCCcEEEEECCCCeEEEeeeCC--------------------------------------------------------
Q 020756          144 GNLPGDMAFWDYVDGKQLGTTRAE--------------------------------------------------------  167 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~~i~~~~~~--------------------------------------------------------  167 (321)
                          +.|++||+.+++.+..+..+                                                        
T Consensus       154 ----~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          154 ----RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             ----SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             ----CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence                67889998887665443221                                                        


Q ss_pred             ------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEe-ccCceEEEEEecCCCCCCCC
Q 020756          168 ------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       168 ------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                                  .+..++|+|||++|+++        ++.+.+||+.. +.+... ....+..+.|+|+...++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             CceEeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence                        12247899999988766        47899999854 444332 23467889999998877653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.63  E-value=2e-14  Score=132.45  Aligned_cols=140  Identities=9%  Similarity=0.051  Sum_probs=94.4

Q ss_pred             CCCeEEEEECc---CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CC---cCeeeEEEcCCCCeEEEEcc---------
Q 020756           82 EGPVHDVQWSY---SGSEFAVVYGFMPASATIFNKK-CRPILEL--GS---GPYNTVRWNPKGKFLCLAGF---------  143 (321)
Q Consensus        82 ~~~v~~~~wsP---~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~---~~~~~~~~sPdG~~l~~~g~---------  143 (321)
                      ...+..++|+|   ++..|+.  +..|++|+|||++ ++.+.++  |.   ..+.+++|||+|+++++++.         
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaS--gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS  255 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLG--TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL  255 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEE--EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred             CCceeeEEeeccCCCCceEEE--ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence            33444444544   3344444  5779999999996 5567777  22   24567799999998865331         


Q ss_pred             CCCCCcEEEEECCCCeEEEee-----eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE--eccCceE
Q 020756          144 GNLPGDMAFWDYVDGKQLGTT-----RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK--KMFDKLF  215 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~~i~~~-----~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~--~~~~~~~  215 (321)
                      +..|++|++||..+++.+..+     .++....++.+.+|.++++++.      |++|+|||+ +|+++..  .|...+.
T Consensus       256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~------DgTIkIWDl~tGk~l~tL~gH~~~vv  329 (356)
T 2w18_A          256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT------SGTIAIWDLLLGQCTALLPPVSDQHW  329 (356)
T ss_dssp             --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEET------TSCEEEEETTTCSEEEEECCC--CCC
T ss_pred             cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcC------CCcEEEEECCCCcEEEEecCCCCCeE
Confidence            347899999999999887655     2332223344445888898884      999999999 4666644  4555554


Q ss_pred             -EEEEecCCCCCCCC
Q 020756          216 -QAEWKPVSPDKFGD  229 (321)
Q Consensus       216 -~~~w~P~~~~~~~~  229 (321)
                       .++|+|++..+++.
T Consensus       330 s~vafSPDG~~LaSG  344 (356)
T 2w18_A          330 SFVKWSGTDSHLLAG  344 (356)
T ss_dssp             CEEEECSSSSEEEEE
T ss_pred             EEEEECCCCCEEEEE
Confidence             58999999888865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.62  E-value=1.5e-13  Score=130.24  Aligned_cols=192  Identities=11%  Similarity=0.135  Sum_probs=136.6

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++.+............+.|  +|+.+++.. .           ...+.+++............|.
T Consensus       217 ~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~-----------dg~i~iwd~~~~~~~~~~~~~~  279 (445)
T 2ovr_B          217 RDATLRVWDIET---GQCLHVLMGHVAAVRCVQY--DGRRVVSGA-Y-----------DFMVKVWDPETETCLHTLQGHT  279 (445)
T ss_dssp             TTSEEEEEESSS---CCEEEEEECCSSCEEEEEE--CSSCEEEEE-T-----------TSCEEEEEGGGTEEEEEECCCS
T ss_pred             CCCEEEEEECCC---CcEEEEEcCCcccEEEEEE--CCCEEEEEc-C-----------CCEEEEEECCCCcEeEEecCCC
Confidence            456778888777   5666665555666666666  566655532 1           1125555554442222223478


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..|.++.|  ++..|++  +..++.+.+||++ +..+..+  +...+.++.+  ++++|++++   .+|.|.+||+.+++
T Consensus       280 ~~v~~~~~--~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~dg~i~vwd~~~~~  350 (445)
T 2ovr_B          280 NRVYSLQF--DGIHVVS--GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGN---ADSTVKIWDIKTGQ  350 (445)
T ss_dssp             SCEEEEEE--CSSEEEE--EETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEE---TTSCEEEEETTTCC
T ss_pred             CceEEEEE--CCCEEEE--EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEe---CCCeEEEEECCCCc
Confidence            89999999  7888877  4678999999995 4556666  5566666665  578999998   89999999999999


Q ss_pred             EEEeeeC---C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE-------eccCceEEEEEecCCCCC
Q 020756          160 QLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK-------KMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       160 ~i~~~~~---~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~-------~~~~~~~~~~w~P~~~~~  226 (321)
                      .+..+..   +  .+++++|+  +++|++++.      |+.|+|||+. |+.+..       .+...++.+.|+|+...+
T Consensus       351 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  422 (445)
T 2ovr_B          351 CLQTLQGPNKHQSAVTCLQFN--KNFVITSSD------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC  422 (445)
T ss_dssp             EEEEECSTTSCSSCEEEEEEC--SSEEEEEET------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             EEEEEccCCCCCCCEEEEEEC--CCEEEEEeC------CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence            8888875   3  57778884  789999994      9999999984 665533       244679999999987655


Q ss_pred             CC
Q 020756          227 FG  228 (321)
Q Consensus       227 ~~  228 (321)
                      +.
T Consensus       423 a~  424 (445)
T 2ovr_B          423 AV  424 (445)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.62  E-value=1.1e-14  Score=146.33  Aligned_cols=203  Identities=13%  Similarity=0.072  Sum_probs=133.0

Q ss_pred             CceEEEEEcCCcCCCCceeeeeccc---CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR   80 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~---~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~   80 (321)
                      .+.|.||++..   ++. .+.....   .....+.|||||+.|++...             .+|++++..++...++...
T Consensus        90 ~~~i~~~d~~~---~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------------~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           90 TGYYVLSKIPH---GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------------NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             CSEEEEEESSS---CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-------------TEEEEESSSSSCCEEEECC
T ss_pred             eeeEEEEECCC---Cce-EeccCCccccccccccEECCCCCEEEEEEC-------------CeEEEEECCCCceEEEecC
Confidence            47889999987   443 2222221   22567899999999998631             2588888877655555444


Q ss_pred             CCCCe------------------EEEEECcCCCEEEEEEccC--------------------------------CCeEEE
Q 020756           81 KEGPV------------------HDVQWSYSGSEFAVVYGFM--------------------------------PASATI  110 (321)
Q Consensus        81 ~~~~v------------------~~~~wsP~g~~l~~~~g~~--------------------------------~~~i~i  110 (321)
                      +...+                  .+++|||||+.|+++....                                ...+.+
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            33333                  7899999999999874221                                127889


Q ss_pred             EeCCCce-eEEeC--------CcCeeeEEEcCCCCeEEEEcc-CCCCCcEEEEECCCCeEEEeeeC-C--Ce----eeEE
Q 020756          111 FNKKCRP-ILELG--------SGPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA-E--CS----VTSE  173 (321)
Q Consensus       111 ~d~~~~~-~~~~~--------~~~~~~~~~sPdG~~l~~~g~-~n~~g~i~iwD~~~~~~i~~~~~-~--~~----~~~~  173 (321)
                      ||+.+.. ...+.        ...+..+.|||||++|++... +..+..|++||+.++++...+.. +  .+    ..+.
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  312 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV  312 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce
Confidence            9996654 34442        456788999999998877642 22346899999999876554432 1  22    3789


Q ss_pred             EccCCCEEEEEEcCCceeecC------cEEEEe-ecCce---e--EEeccCceEE-EEEecCCCCCC
Q 020756          174 WSPDGRYFMTATTAPRLQIDN------GIKIFH-HNGSL---F--FKKMFDKLFQ-AEWKPVSPDKF  227 (321)
Q Consensus       174 wSpdG~~l~t~~s~~rl~~d~------~v~iw~-~~g~~---l--~~~~~~~~~~-~~w~P~~~~~~  227 (321)
                      |||||++|++.++.    .++      .+.+|| ..+..   +  .......+.. +.|+|++..++
T Consensus       313 ~spdg~~l~~~~~~----~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~  375 (723)
T 1xfd_A          313 FSKDGRKFFFIRAI----PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY  375 (723)
T ss_dssp             ECTTSCSEEEEEEE----CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred             EcCCCCeEEEEEec----ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEE
Confidence            99999999876321    244      466777 34433   3  2212223444 69999998775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.61  E-value=4.4e-15  Score=146.01  Aligned_cols=202  Identities=12%  Similarity=0.046  Sum_probs=131.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeeccc-CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCceeeeecC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPLR   80 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~-~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~~~v~l~   80 (321)
                      .+.++||.+..    ....+.+.+. .....+.||||  .+++.+..+  ...    ....||.++.  .+...   .+.
T Consensus        43 ~g~~~lw~~~~----g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~--~g~----~~~~l~~~~~~~~g~~~---~l~  107 (582)
T 3o4h_A           43 EGSVNAYLYDG----GETVKLNREPINSVLDPHYGVG--RVILVRDVS--KGA----EQHALFKVNTSRPGEEQ---RLE  107 (582)
T ss_dssp             TTEEEEEEEET----TEEEECCSSCCSEECEECTTCS--EEEEEEECS--TTS----CCEEEEEEETTSTTCCE---ECT
T ss_pred             CCceeEEEEcC----CCcEeeecccccccccccCCCC--eEEEEeccC--CCC----cceEEEEEeccCCCccc---ccc
Confidence            57899999843    4555666555 46788999998  555543211  111    1235888888  66532   333


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCC-CCCcEEEEECCCCe
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGK  159 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n-~~g~i~iwD~~~~~  159 (321)
                      ....+...+|+|||+.++++.+..+ .+.|||+.+.....+...+..++.|||||++|++++... ..+.|++||+.+++
T Consensus       108 ~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~  186 (582)
T 3o4h_A          108 AVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG  186 (582)
T ss_dssp             TSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred             CCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence            3445667899999997777655544 455999976655554222228999999999999876221 11679999998886


Q ss_pred             EEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecC--cEEEEeecCceeE--EeccCceEEEE--------EecCCCCC
Q 020756          160 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDN--GIKIFHHNGSLFF--KKMFDKLFQAE--------WKPVSPDK  226 (321)
Q Consensus       160 ~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~--~v~iw~~~g~~l~--~~~~~~~~~~~--------w~P~~~~~  226 (321)
                      ......+. .+..++|||||++|+++.      .++  .|++||+.+..+.  ..+...+..+.        |+|++..+
T Consensus       187 ~~~l~~~~~~~~~~~~SpDG~~l~~~~------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          187 LRVFDSGEGSFSSASISPGMKVTAGLE------TAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             CEEECCSSCEEEEEEECTTSCEEEEEE------CSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             ceEeecCCCccccceECCCCCEEEEcc------CCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEE
Confidence            55433332 567899999999999555      255  7999998654332  22333444455        99998333


Q ss_pred             C
Q 020756          227 F  227 (321)
Q Consensus       227 ~  227 (321)
                      +
T Consensus       261 ~  261 (582)
T 3o4h_A          261 V  261 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.61  E-value=1.8e-13  Score=129.68  Aligned_cols=193  Identities=10%  Similarity=0.147  Sum_probs=136.2

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|+||++.+   ++.+.....+......+.|+  ++.+++..            ....+.+++............|.
T Consensus       177 ~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~--~~~l~s~s------------~dg~i~~wd~~~~~~~~~~~~~~  239 (445)
T 2ovr_B          177 TDRTLKVWNAET---GECIHTLYGHTSTVRCMHLH--EKRVVSGS------------RDATLRVWDIETGQCLHVLMGHV  239 (445)
T ss_dssp             TTSCEEEEETTT---TEEEEEECCCSSCEEEEEEE--TTEEEEEE------------TTSEEEEEESSSCCEEEEEECCS
T ss_pred             CCCeEEEEECCc---CcEEEEECCCCCcEEEEEec--CCEEEEEe------------CCCEEEEEECCCCcEEEEEcCCc
Confidence            456677777766   55555555555556666664  34443321            11235666665443333334588


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      .+|.++.|  +|+.|++.  ..++.+.+||++. ..+..+  |...+.++.|  +|++|++++   .++.|++||+.+++
T Consensus       240 ~~v~~~~~--~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~d~~i~i~d~~~~~  310 (445)
T 2ovr_B          240 AAVRCVQY--DGRRVVSG--AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS---LDTSIRVWDVETGN  310 (445)
T ss_dssp             SCEEEEEE--CSSCEEEE--ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE---TTSCEEEEETTTCC
T ss_pred             ccEEEEEE--CCCEEEEE--cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe---CCCeEEEEECCCCC
Confidence            99999999  67788774  6688999999854 455565  6788999999  899999999   89999999999999


Q ss_pred             EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe-----ccCceEEEEEecCCCCCCCC
Q 020756          160 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-----MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       160 ~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~-----~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++..+..+......+++++.+|++++.      |+.++|||+ +++.+...     +...+..+.|++  ..+++.
T Consensus       311 ~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~  378 (445)
T 2ovr_B          311 CIHTLTGHQSLTSGMELKDNILVSGNA------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITS  378 (445)
T ss_dssp             EEEEECCCCSCEEEEEEETTEEEEEET------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEE
T ss_pred             EEEEEcCCcccEEEEEEeCCEEEEEeC------CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEE
Confidence            999888774444455667889999994      999999998 56655332     556799999964  344443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.61  E-value=4.2e-13  Score=123.54  Aligned_cols=173  Identities=14%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC------c-----eeeeecCCCCCeEEEEECcCCCEEEEE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------H-----EGLVPLRKEGPVHDVQWSYSGSEFAVV  100 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~------~-----~~~v~l~~~~~v~~~~wsP~g~~l~~~  100 (321)
                      ..+.|+|+|++|++....    .     +...+|.++..+.      .     ...+.+........++|+|||++++++
T Consensus       158 ~~~~~spdg~~l~~~~~~----~-----~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  228 (361)
T 3scy_A          158 HCVRITPDGKYLLADDLG----T-----DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLI  228 (361)
T ss_dssp             EEEEECTTSSEEEEEETT----T-----TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             eEEEECCCCCEEEEEeCC----C-----CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEE
Confidence            458999999998875210    0     2223444444332      1     023344455677899999999988876


Q ss_pred             EccCCCeEEEEeCCCcee---EEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC--CCe--EEEeeeC-C
Q 020756          101 YGFMPASATIFNKKCRPI---LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTTRA-E  167 (321)
Q Consensus       101 ~g~~~~~i~i~d~~~~~~---~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~--~~~--~i~~~~~-~  167 (321)
                       +..++.|.+||+....+   ..+     +......+.|+|||++|+++..+ .++.|.+||++  +++  .+..+.. .
T Consensus       229 -~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~g~  306 (361)
T 3scy_A          229 -NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLTGI  306 (361)
T ss_dssp             -ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             -cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecCCC
Confidence             34578999999864332   222     12345689999999999877622 04789999985  443  4444433 3


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---CceeEE---eccCceEEEEEe
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFK---KMFDKLFQAEWK  220 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~l~~---~~~~~~~~~~w~  220 (321)
                      .+..++|||||++|+++..     .++.+.||+++   |++...   .+.....++.|.
T Consensus       307 ~~~~~~~spdg~~l~~~~~-----~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          307 HPRNFIITPNGKYLLVACR-----DTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CCCEEEECTTSCEEEEEET-----TTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCceEEECCCCCEEEEEEC-----CCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            6778999999999999885     37889998764   554422   244567777775

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.60  E-value=1.8e-13  Score=129.62  Aligned_cols=192  Identities=10%  Similarity=0.126  Sum_probs=142.9

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.+   ++.+.....+...+..+.|  +|+.|++.. .|         |  .+.+++............|
T Consensus       150 ~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~--~~~~l~sg~-~d---------g--~i~vwd~~~~~~~~~~~~h  212 (435)
T 1p22_A          150 LRDNTIKIWDKNT---LECKRILTGHTGSVLCLQY--DERVIITGS-SD---------S--TVRVWDVNTGEMLNTLIHH  212 (435)
T ss_dssp             ESSSCEEEEESSS---CCEEEEECCCSSCEEEEEC--CSSEEEEEE-TT---------S--CEEEEESSSCCEEEEECCC
T ss_pred             eCCCeEEEEeCCC---CeEEEEEcCCCCcEEEEEE--CCCEEEEEc-CC---------C--eEEEEECCCCcEEEEEcCC
Confidence            3568899999988   6777777777778888888  677665542 11         2  2555665544333333458


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-ee---EEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~---~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                      .+.|.++.|++  ..|++  +..++.|.+||+... .+   ..+  |...+.++.|  +|++|++++   .+|.|.+||+
T Consensus       213 ~~~v~~l~~~~--~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~---~dg~i~vwd~  283 (435)
T 1p22_A          213 CEAVLHLRFNN--GMMVT--CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS---GDRTIKVWNT  283 (435)
T ss_dssp             CSCEEEEECCT--TEEEE--EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE---TTSEEEEEET
T ss_pred             CCcEEEEEEcC--CEEEE--eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe---CCCeEEEEEC
Confidence            89999999985  46666  467899999999543 22   233  6788999999  789999999   8999999999


Q ss_pred             CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++++++..+..+  .+..+.|  ++++|++++.      |+.|+|||+. |+.+  ...|...+..+.|  ++..+++.
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg  352 (435)
T 1p22_A          284 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG  352 (435)
T ss_dssp             TTCCEEEEEECCSSCEEEEEE--ETTEEEEEET------TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred             CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC------CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence            999999988876  5677777  6889999994      9999999995 6655  4456778999988  44445543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.60  E-value=1.5e-13  Score=124.22  Aligned_cols=205  Identities=13%  Similarity=0.115  Sum_probs=131.8

Q ss_pred             ceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCC
Q 020756            5 ASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK   81 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~   81 (321)
                      +.|.+|++.... ++  .+..... ......+.|+|+|++|++....    .     +...+|.++ ++.. .....+..
T Consensus        60 ~~v~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~----~-----~~i~~~d~~-~~~~~~~~~~~~~  127 (343)
T 1ri6_A           60 FRVLAYRIAPDD-GALTFAAESAL-PGSLTHISTDHQGQFVFVGSYN----A-----GNVSVTRLE-DGLPVGVVDVVEG  127 (343)
T ss_dssp             TEEEEEEECTTT-CCEEEEEEEEC-SSCCSEEEECTTSSEEEEEETT----T-----TEEEEEEEE-TTEEEEEEEEECC
T ss_pred             CeEEEEEecCCC-Cceeecccccc-CCCCcEEEEcCCCCEEEEEecC----C-----CeEEEEECC-CCccccccccccC
Confidence            789999997311 22  2222222 2367789999999998775311    1     223344443 3321 12222344


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeE-------Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL-------EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~-------~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      ...+++++|+|+|++++++. ..++.+.+||+.. ..+.       .. .......+.|+|+|++|++++.  .++.|.+
T Consensus       128 ~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~  204 (343)
T 1ri6_A          128 LDGCHSANISPDNRTLWVPA-LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDV  204 (343)
T ss_dssp             CTTBCCCEECTTSSEEEEEE-GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEE
T ss_pred             CCCceEEEECCCCCEEEEec-CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEE
Confidence            55689999999999888763 3567999999864 3221       22 2346778999999998877652  5689999


Q ss_pred             EECCC--Ce--EEEeee---C-----CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Cc---eeEEe-ccCce
Q 020756          153 WDYVD--GK--QLGTTR---A-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GS---LFFKK-MFDKL  214 (321)
Q Consensus       153 wD~~~--~~--~i~~~~---~-----~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~---~l~~~-~~~~~  214 (321)
                      ||++.  ++  .+....   .     ..+..++|+|||++|+++..     .++.+.+|++.  +.   .+... ....+
T Consensus       205 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-----~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  279 (343)
T 1ri6_A          205 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-----TASLITVFSVSEDGSVLSKEGFQPTETQP  279 (343)
T ss_dssp             EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET-----TTTEEEEEEECTTSCCEEEEEEEECSSSC
T ss_pred             EEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec-----CCCEEEEEEEcCCCCceEEeeeecCCCcc
Confidence            99953  32  222222   1     13456999999999987664     38899999996  32   22221 22347


Q ss_pred             EEEEEecCCCCCCCC
Q 020756          215 FQAEWKPVSPDKFGD  229 (321)
Q Consensus       215 ~~~~w~P~~~~~~~~  229 (321)
                      ..+.|+|++..++..
T Consensus       280 ~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          280 RGFNVDHSGKYLIAA  294 (343)
T ss_dssp             CCEEECTTSSEEEEE
T ss_pred             ceEEECCCCCEEEEe
Confidence            889999998877754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.59  E-value=2.4e-13  Score=136.38  Aligned_cols=187  Identities=10%  Similarity=0.107  Sum_probs=124.5

Q ss_pred             ceEEeCCCCCeeEEEEEecccC----------------------CCceeecceeEEEEEcCCCceeeeec--CCCCCeEE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDK----------------------TNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHD   87 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~----------------------t~~s~~g~~~l~~l~~~g~~~~~v~l--~~~~~v~~   87 (321)
                      ..+.|||||++|++....+...                      .+. ..+...|+++++.+.....+..  .+...+.+
T Consensus       184 ~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          184 KGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT-PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS-CCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             ceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC-CCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            6889999999998874211000                      000 0134568899987764444432  35567899


Q ss_pred             EEECcCCCEEEEEEccCC---CeEEEEeCCCc-eeEEe----CCc---CeeeEEEcC--CCCeEEEEccCCCCCcEEEEE
Q 020756           88 VQWSYSGSEFAVVYGFMP---ASATIFNKKCR-PILEL----GSG---PYNTVRWNP--KGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        88 ~~wsP~g~~l~~~~g~~~---~~i~i~d~~~~-~~~~~----~~~---~~~~~~~sP--dG~~l~~~g~~n~~g~i~iwD  154 (321)
                      ++|+|||+.|++......   ..+.+||+.+. ....+    +..   .+..+.|+|  ||++|+++.   .++.+.||+
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~---~~g~~~l~~  339 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR---RDGWNHLYL  339 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC---TTSSCEEEE
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc---cCCccEEEE
Confidence            999999999988643221   28899999655 44333    222   246789999  999888776   667777777


Q ss_pred             CC-CCeEEEeeeCC--Ceee-EEEccCCCEEEEEEcCCceeecC----cEEEEeecCcee-EEeccCceEEEEEecCCCC
Q 020756          155 YV-DGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDN----GIKIFHHNGSLF-FKKMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       155 ~~-~~~~i~~~~~~--~~~~-~~wSpdG~~l~t~~s~~rl~~d~----~v~iw~~~g~~l-~~~~~~~~~~~~w~P~~~~  225 (321)
                      ++ ++..+..+..+  .+.. +.|||||++|+++++.     ++    .|.+|+..+..+ ...+...+..+.|+|++..
T Consensus       340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~  414 (706)
T 2z3z_A          340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-----ASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSA  414 (706)
T ss_dssp             EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-----SCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSE
T ss_pred             EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-----CCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCE
Confidence            65 55566655554  4555 7999999999888752     33    455666644333 2234557889999999876


Q ss_pred             CC
Q 020756          226 KF  227 (321)
Q Consensus       226 ~~  227 (321)
                      ++
T Consensus       415 l~  416 (706)
T 2z3z_A          415 II  416 (706)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.59  E-value=2.6e-14  Score=144.96  Aligned_cols=212  Identities=12%  Similarity=0.101  Sum_probs=132.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeeccc-----CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP   78 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~-----~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~   78 (321)
                      .+.|++|++.+   +++........     ....++.|||||++|++....   .+..-+.....+|++++.++....+.
T Consensus        35 ~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~---~~~~r~~~~~~~~~~d~~~~~~~~l~  108 (740)
T 4a5s_A           35 ENNILVFNAEY---GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY---VKQWRHSYTASYDIYDLNKRQLITEE  108 (740)
T ss_dssp             TTEEEEEETTT---CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE---EECSSSCEEEEEEEEETTTTEECCSS
T ss_pred             CCcEEEEECCC---CceEEEEechhhhhhcccccceEECCCCCEEEEEECC---eeeEEEccceEEEEEECCCCcEEEcc
Confidence            46899999988   44432222111     112247999999999886432   11111112335778888776433332


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CC------------------cCeeeEEEcCCCCe
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GS------------------GPYNTVRWNPKGKF  137 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~------------------~~~~~~~~sPdG~~  137 (321)
                       .+.+.+..++|||||+.||++.   +..|.+||+.+.....+   +.                  +....+.|||||+.
T Consensus       109 -~~~~~~~~~~~SPdG~~la~~~---~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~  184 (740)
T 4a5s_A          109 -RIPNNTQWVTWSPVGHKLAYVW---NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF  184 (740)
T ss_dssp             -CCCTTEEEEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred             -cCCCcceeeEECCCCCEEEEEE---CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCE
Confidence             3567899999999999999973   46899999966544444   11                  11134899999999


Q ss_pred             EEEEccCC---------------------------------CCCcEEEEECCC---C---eEEEeee------C-CCeee
Q 020756          138 LCLAGFGN---------------------------------LPGDMAFWDYVD---G---KQLGTTR------A-ECSVT  171 (321)
Q Consensus       138 l~~~g~~n---------------------------------~~g~i~iwD~~~---~---~~i~~~~------~-~~~~~  171 (321)
                      |++..+..                                 ....|++||+.+   +   +......      + ..+..
T Consensus       185 la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  264 (740)
T 4a5s_A          185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD  264 (740)
T ss_dssp             EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred             EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence            99975211                                 112688999988   7   3333221      1 25778


Q ss_pred             EEEccCCCEEEEEEcCCceeecCcEEEEeecCce-------eE----EeccCce-----EEEEEecCCCCCC
Q 020756          172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-------FF----KKMFDKL-----FQAEWKPVSPDKF  227 (321)
Q Consensus       172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~-------l~----~~~~~~~-----~~~~w~P~~~~~~  227 (321)
                      ++|||||+.++.....  ...+..|.+||+.+..       +.    ..+...+     ..+.|+|++..++
T Consensus       265 ~~wspdg~~~~~~~~r--~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          265 VTWATQERISLQWLRR--IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             EEEEETTEEEEEEEES--STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             EEEeCCCeEEEEEeCC--CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence            9999999987766531  1123368899985422       11    2233222     3678999988655

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=151.56  Aligned_cols=182  Identities=13%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC---CCeEEEEECcCCCEEEEEEcc--
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE---GPVHDVQWSYSGSEFAVVYGF--  103 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~---~~v~~~~wsP~g~~l~~~~g~--  103 (321)
                      .....+.|+|+|+++ +..   .         ...|++++..++....+.-.+.   ..+.+++|||||++|++....  
T Consensus        16 ~~~~~~~~s~dg~~~-~~~---~---------d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~   82 (719)
T 1z68_A           16 YKTFFPNWISGQEYL-HQS---A---------DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSK   82 (719)
T ss_dssp             CCCCCCEESSSSEEE-EEC---T---------TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE
T ss_pred             CCCCccEECCCCeEE-EEc---C---------CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCce
Confidence            345688999999533 321   1         1247888887764444332221   248899999999999987541  


Q ss_pred             -----CCCeEEEEeCCCcee---EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee-CC-C-e---
Q 020756          104 -----MPASATIFNKKCRPI---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE-C-S---  169 (321)
Q Consensus       104 -----~~~~i~i~d~~~~~~---~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~-~~-~-~---  169 (321)
                           .++.+.+||+.+...   ..+ ...+..+.|||||+.|+++.    +++|++||+.+++...... .+ . +   
T Consensus        83 ~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~----~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           83 LWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY----QNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             CSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE----TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             eEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE----CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence                 257899999976655   344 25688899999999999984    4799999998886544321 11 1 1   


Q ss_pred             --------------eeEEEccCCCEEEEEEcCCc-e---------------------------eecCcEEEEeecCceeE
Q 020756          170 --------------VTSEWSPDGRYFMTATTAPR-L---------------------------QIDNGIKIFHHNGSLFF  207 (321)
Q Consensus       170 --------------~~~~wSpdG~~l~t~~s~~r-l---------------------------~~d~~v~iw~~~g~~l~  207 (321)
                                    ..+.|||||++|++++.... .                           ..+..+++||+.+....
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~  237 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV  237 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred             cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence                          37999999999999874100 0                           01127889999765321


Q ss_pred             ---E--------eccCceEEEEEecCCCCCCC
Q 020756          208 ---K--------KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       208 ---~--------~~~~~~~~~~w~P~~~~~~~  228 (321)
                         .        .+...+..+.|+|+...++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~  269 (719)
T 1z68_A          238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ  269 (719)
T ss_dssp             CCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred             ceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence               1        23446789999999654443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.58  E-value=8.3e-15  Score=147.40  Aligned_cols=212  Identities=14%  Similarity=0.118  Sum_probs=133.2

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccC---ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-ee
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRC---STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VP   78 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~---~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~   78 (321)
                      ..+.|++|++..   +++.........   ....+.|||||++|++..... ..  -.+.+...|+++++.++.... ..
T Consensus        34 ~d~~i~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~-~~--~~~s~~~~i~~~d~~~g~~~~~~~  107 (719)
T 1z68_A           34 ADNNIVLYNIET---GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYS-KL--WRYSYTATYYIYDLSNGEFVRGNE  107 (719)
T ss_dssp             TTSCEEEEESSS---CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEE-EC--SSSCEEEEEEEEETTTTEECCSSC
T ss_pred             CCCCEEEEEcCC---CcEEEEEccccccccceeeEEECCCCCeEEEEecCc-ee--EEeecceEEEEEECCCCcccccee
Confidence            357899999988   554332222211   367899999999998864321 00  001123468888887763300 22


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---C-Cc-----------------CeeeEEEcCCCCe
Q 020756           79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---G-SG-----------------PYNTVRWNPKGKF  137 (321)
Q Consensus        79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~-~~-----------------~~~~~~~sPdG~~  137 (321)
                      +  ...+.+++|||||+.|+++.   ++.|.+||+.+.....+   + ..                 ....+.|||||++
T Consensus       108 l--~~~~~~~~~SPDG~~la~~~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~  182 (719)
T 1z68_A          108 L--PRPIQYLCWSPVGSKLAYVY---QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF  182 (719)
T ss_dssp             C--CSSBCCEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE
T ss_pred             c--CcccccceECCCCCEEEEEE---CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE
Confidence            2  25688999999999999863   56999999965444433   1 11                 1148999999999


Q ss_pred             EEEEccCC-------------------------------CCCcEEEEECCCCeEE---Ee-----eeCC--CeeeEEEcc
Q 020756          138 LCLAGFGN-------------------------------LPGDMAFWDYVDGKQL---GT-----TRAE--CSVTSEWSP  176 (321)
Q Consensus       138 l~~~g~~n-------------------------------~~g~i~iwD~~~~~~i---~~-----~~~~--~~~~~~wSp  176 (321)
                      |++++..+                               ....|++||+.+++.+   ..     +..+  .+..++|||
T Consensus       183 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp  262 (719)
T 1z68_A          183 LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT  262 (719)
T ss_dssp             EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS
T ss_pred             EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC
Confidence            99987321                               1127899999887642   11     1123  567899999


Q ss_pred             CCCEEEEEEcCCceeecCcEEEEe----ecCc-ee--E----EeccCceE-----EEEEecCCCCCC
Q 020756          177 DGRYFMTATTAPRLQIDNGIKIFH----HNGS-LF--F----KKMFDKLF-----QAEWKPVSPDKF  227 (321)
Q Consensus       177 dG~~l~t~~s~~rl~~d~~v~iw~----~~g~-~l--~----~~~~~~~~-----~~~w~P~~~~~~  227 (321)
                      ||+++++....  ......|.+||    ..+. ..  .    ..+...+.     .+.|+|++..++
T Consensus       263 D~~~~~~~~~~--~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  327 (719)
T 1z68_A          263 DERVCLQWLKR--VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY  327 (719)
T ss_dssp             SSEEEEEEEES--STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred             CCeEEEEEecc--ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence            98877765431  00113477888    6433 22  2    23344454     789999988654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.58  E-value=3.3e-14  Score=139.76  Aligned_cols=195  Identities=13%  Similarity=0.038  Sum_probs=128.4

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      ...+||.+.....+... +...+.. ...+.|+|+|+.+++....+         +...||  ++.++....+.- +.. 
T Consensus        88 ~~~~l~~~~~~~~g~~~-~l~~~~~-~~~~~~s~dg~~~~~~s~~~---------~~~~l~--d~~~g~~~~l~~-~~~-  152 (582)
T 3o4h_A           88 EQHALFKVNTSRPGEEQ-RLEAVKP-MRILSGVDTGEAVVFTGATE---------DRVALY--ALDGGGLRELAR-LPG-  152 (582)
T ss_dssp             CCEEEEEEETTSTTCCE-ECTTSCS-BEEEEEEECSSCEEEEEECS---------SCEEEE--EEETTEEEEEEE-ESS-
T ss_pred             cceEEEEEeccCCCccc-cccCCCC-ceeeeeCCCCCeEEEEecCC---------CCceEE--EccCCcEEEeec-CCC-
Confidence            34577776651112332 3333332 33669999999887764321         111244  444443334332 222 


Q ss_pred             eEEEEECcCCCEEEEEEcc--CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCC--cEEEEECCCC
Q 020756           85 VHDVQWSYSGSEFAVVYGF--MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDG  158 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~--~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g--~i~iwD~~~~  158 (321)
                       .++.|||||+.|++....  ....|.+||+.+.....+  +...+..+.|||||++|+.+.   .++  .|++||++++
T Consensus       153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~---~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE---TAREARLVTVDPRDG  228 (582)
T ss_dssp             -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE---CSSCEEEEEECTTTC
T ss_pred             -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc---CCCeeEEEEEcCCCC
Confidence             899999999999976432  115799999876655566  556789999999999999665   566  8999999988


Q ss_pred             eEEEeeeCC--CeeeEE--------EccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCC
Q 020756          159 KQLGTTRAE--CSVTSE--------WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~--------wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      +.. .+..+  .+..+.        |||||..++++.      .++.++||++ |+.+. .....+..++|+ +...++.
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~------~~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          229 SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR------REGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE------ETTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEE
T ss_pred             cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEE------cCCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEE
Confidence            776 55444  344456        999997666666      4899999999 76653 333567788888 6655543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.56  E-value=7.3e-13  Score=120.15  Aligned_cols=199  Identities=12%  Similarity=0.075  Sum_probs=135.3

Q ss_pred             CCceEEEEEcCCcCCCCceeeeeccc-CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeeecC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLR   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~-~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~l~   80 (321)
                      ..+.|.+|++.+   ++.+....... .....+.|+|+|+.+++...           +...|+.++...... ..+.+.
T Consensus        19 ~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-----------~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B           19 YPNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN-----------HYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             TTTEEEEEETTT---TEEEEEEECSSCCSSCEEEECTTSSEEEEEET-----------TTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCeEEEEECCC---CcEEEEEecCCCCCCceeEECCCCCEEEEEeC-----------CCCcEEEEeCCCCcEEEEEEcc
Confidence            467899999988   66665555432 14678999999998877531           123477787765422 233333


Q ss_pred             C-----CCCeEEEEECcCCCEEEEEEcc----------CCCeEEEEeCCCc----eeEEe-CCcCeeeEEEcCCCCeEEE
Q 020756           81 K-----EGPVHDVQWSYSGSEFAVVYGF----------MPASATIFNKKCR----PILEL-GSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        81 ~-----~~~v~~~~wsP~g~~l~~~~g~----------~~~~i~i~d~~~~----~~~~~-~~~~~~~~~~sPdG~~l~~  140 (321)
                      +     ...+++++|+|||++|++....          .++.+.+||+...    .+..+ +...+.++.|+|||+ |++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~  163 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV  163 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE
Confidence            2     1237899999999999886421          1369999998642    23333 344678899999999 555


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeCC-----------------------------------------------------
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRAE-----------------------------------------------------  167 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~~-----------------------------------------------------  167 (321)
                      ++     +.|.+||+.+++.+..+...                                                     
T Consensus       164 ~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          164 AG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             ES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             cc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            54     35999999988776654322                                                     


Q ss_pred             -----------------CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeec-CceeEEe-ccCceEEEEEecCCCCCC
Q 020756          168 -----------------CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       168 -----------------~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~-~~~~~~~~~w~P~~~~~~  227 (321)
                                       ....++||| ||++|+++        ++.+.+||+. ++.+... ....+..+.|+|++..++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  310 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--------LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLY  310 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--------ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEE
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--------cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEE
Confidence                             123467789 99998877        4689999985 4444332 234577899999988877


Q ss_pred             CC
Q 020756          228 GD  229 (321)
Q Consensus       228 ~~  229 (321)
                      ..
T Consensus       311 ~~  312 (349)
T 1jmx_B          311 LG  312 (349)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.55  E-value=1e-12  Score=120.08  Aligned_cols=204  Identities=11%  Similarity=0.099  Sum_probs=129.7

Q ss_pred             CceEEEEEcCCcCCCCceeeeec--ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee--c
Q 020756            4 PASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--L   79 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~--f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~--l   79 (321)
                      ...|.||.+...  ...+.....  .......+.|+|+|+ |++.....         +...|+.+++.++....+.  .
T Consensus        15 ~~~i~v~~~d~~--tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~---------~~~~v~~~~~~~g~~~~~~~~~   82 (347)
T 3hfq_A           15 SQGIYQGTLDTT--AKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKED---------DEGGIAAWQIDGQTAHKLNTVV   82 (347)
T ss_dssp             CCEEEEEEEETT--TTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEET---------TEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEcCC--CCeEEEeeeeeccCCcceEEEccCCe-EEEEEecC---------CCceEEEEEecCCcEEEeeeee
Confidence            456888888752  222322222  124556799999999 66543210         1223566665444322222  1


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC----ceeEEe-C--Cc--------CeeeEEEcCCCCeEEEEccC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC----RPILEL-G--SG--------PYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~----~~~~~~-~--~~--------~~~~~~~sPdG~~l~~~g~~  144 (321)
                      .+...+..++|+|||+.|+++ +..++.+.+||+..    ..+..+ .  .+        .+..+.|+|||+ |++++. 
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~-  159 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSA-NYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL-  159 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEE-ETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET-
T ss_pred             cCCCCCEEEEECCCCCEEEEE-eCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC-
Confidence            245678899999999998886 34578999999842    223333 1  11        367899999999 555542 


Q ss_pred             CCCCcEEEEECC-CCeEE--EeeeC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---Ccee--EEec--c
Q 020756          145 NLPGDMAFWDYV-DGKQL--GTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLF--FKKM--F  211 (321)
Q Consensus       145 n~~g~i~iwD~~-~~~~i--~~~~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~l--~~~~--~  211 (321)
                       .++.|.+||+. +++..  ..+..   .....++|+|||++|+++..     .++.+.+|+++   |.+.  ....  .
T Consensus       160 -~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~-----~~~~v~v~~~~~~~g~~~~~~~~~~~~  233 (347)
T 3hfq_A          160 -GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE-----LSSQIASLKYDTQTGAFTQLGIVKTIP  233 (347)
T ss_dssp             -TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----TTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred             -CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC-----CCCEEEEEEecCCCCceEEeeeeeecC
Confidence             45789999998 55432  22222   25677999999998888765     37889999986   3432  1111  1


Q ss_pred             ------CceEEEEEecCCCCCCC
Q 020756          212 ------DKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       212 ------~~~~~~~w~P~~~~~~~  228 (321)
                            ..+..+.|+|++..+|-
T Consensus       234 ~~~~~~~~~~~i~~spdG~~l~v  256 (347)
T 3hfq_A          234 ADYTAHNGAAAIRLSHDGHFLYV  256 (347)
T ss_dssp             TTCCSCCEEEEEEECTTSCEEEE
T ss_pred             CCCCCCCcceeEEECCCCCEEEE
Confidence                  24778999999987764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.55  E-value=1.3e-12  Score=120.28  Aligned_cols=206  Identities=18%  Similarity=0.226  Sum_probs=128.1

Q ss_pred             CCceEEEEEcCCcCCCCceeeee---cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee---
Q 020756            3 SPASVQIYACGKDLQSQPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---   76 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~---~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~---   76 (321)
                      ..+.|.+|++...  ...+....   ......+.+.+  +|++|++....     +    +...+|.+...+.....   
T Consensus        73 ~~~~v~~~~~~~~--~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~-----~----~~v~~~~~~~~g~~~~~~~~  139 (361)
T 3scy_A           73 DQAAVSAFAFDKE--KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYS-----G----GSITVFPIGQDGALLPASDV  139 (361)
T ss_dssp             TTCEEEEEEEETT--TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETT-----T----TEEEEEEBCTTSCBCSCSEE
T ss_pred             CCCcEEEEEEeCC--CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECC-----C----CEEEEEEeCCCCcCccccee
Confidence            3578999999762  12222222   22345566677  88887764210     0    22233433333321111   


Q ss_pred             eecC---------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce---------------eEEe-CCcCeeeEEE
Q 020756           77 VPLR---------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---------------ILEL-GSGPYNTVRW  131 (321)
Q Consensus        77 v~l~---------~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~---------------~~~~-~~~~~~~~~~  131 (321)
                      +...         +...+++++|+|+|++++++ +..+..+.+|++....               ...+ .......+.|
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  218 (361)
T 3scy_A          140 IEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD-DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF  218 (361)
T ss_dssp             EECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE
T ss_pred             EEccCCCCCccccCCCcceEEEECCCCCEEEEE-eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE
Confidence            1111         12345889999999988776 3446799999874221               1222 3445678999


Q ss_pred             cCCCCeEEEEccCCCCCcEEEEECCCCeE--EEeeeCC-----CeeeEEEccCCCEEEEEEcCCceee-cCcEEEEeec-
Q 020756          132 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQI-DNGIKIFHHN-  202 (321)
Q Consensus       132 sPdG~~l~~~g~~n~~g~i~iwD~~~~~~--i~~~~~~-----~~~~~~wSpdG~~l~t~~s~~rl~~-d~~v~iw~~~-  202 (321)
                      +|||++|++++.  .++.|.+||+.+++.  +..+...     ....++|||||++|+++..     . ++.+.||+++ 
T Consensus       219 spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~-----~~~~~i~v~~~~~  291 (361)
T 3scy_A          219 NSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR-----LKADGVAIFKVDE  291 (361)
T ss_dssp             CTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC-----SSSCEEEEEEECT
T ss_pred             cCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC-----CCCCEEEEEEEcC
Confidence            999999888762  468999999987754  3333221     3568999999999987774     3 4789999995 


Q ss_pred             --Ccee--EEe-ccCceEEEEEecCCCCCCCC
Q 020756          203 --GSLF--FKK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       203 --g~~l--~~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                        |.+.  ... ....+..++|+|++..++..
T Consensus       292 ~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~  323 (361)
T 3scy_A          292 TNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA  323 (361)
T ss_dssp             TTCCEEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             CCCcEEEeeEecCCCCCceEEECCCCCEEEEE
Confidence              4532  211 12367789999999877754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.54  E-value=1.7e-13  Score=138.97  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=119.4

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-----CCeEEEEECcCCCEEEEEEc
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-----GPVHDVQWSYSGSEFAVVYG  102 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~-----~~v~~~~wsP~g~~l~~~~g  102 (321)
                      ......+.|+|+|++++..   +         |  .|++++..++....+.-.+.     ....++.|||||++|++.+.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~---~---------~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~   81 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ---E---------N--NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN   81 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE---T---------T--EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred             cccccccEECCCCcEEEEc---C---------C--cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence            4456689999999766541   1         2  36777776654333322222     12356899999999998754


Q ss_pred             cCC-------CeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee-CC-C-e-
Q 020756          103 FMP-------ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE-C-S-  169 (321)
Q Consensus       103 ~~~-------~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~-~~-~-~-  169 (321)
                      ...       +.+.+||+.+.....+  +...+..+.|||||+.|+++.    +++|++||+.+++...... +. . + 
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~----~~~i~~~~~~~~~~~~lt~~g~~~~~~  157 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW----NNDIYVKIEPNLPSYRITWTGKEDIIY  157 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE----TTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             CeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE----CCeEEEEECCCCceEEEcCCCCcccee
Confidence            211       5678999987766555  456789999999999999984    4799999998876443221 11 1 2 


Q ss_pred             ----------------eeEEEccCCCEEEEEEcCCc-------------------e-----------eecCcEEEEeecC
Q 020756          170 ----------------VTSEWSPDGRYFMTATTAPR-------------------L-----------QIDNGIKIFHHNG  203 (321)
Q Consensus       170 ----------------~~~~wSpdG~~l~t~~s~~r-------------------l-----------~~d~~v~iw~~~g  203 (321)
                                      ..+.|||||++|++++....                   .           .....++|||+.+
T Consensus       158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~  237 (740)
T 4a5s_A          158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS  237 (740)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred             cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence                            23889999999999863110                   0           0011588899876


Q ss_pred             ---c---eeEEe--------ccCceEEEEEecCCCCC
Q 020756          204 ---S---LFFKK--------MFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       204 ---~---~l~~~--------~~~~~~~~~w~P~~~~~  226 (321)
                         .   .....        +...+..++|+|++..+
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~  274 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERIS  274 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEE
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEE
Confidence               4   22222        33458899999998743

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.52  E-value=5.6e-12  Score=113.54  Aligned_cols=182  Identities=9%  Similarity=0.038  Sum_probs=124.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeeccc-----CccceEEeCCCCCeeEEEEEecccCCCceee--cceeEEEEEcCCCceee
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY--GESKLNYLTTDGTHEGL   76 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~-----~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~--g~~~l~~l~~~g~~~~~   76 (321)
                      .+.|.+|++.+   ++.+....+..     .....+.|+|+|++|++......  .+...+  ....|+.++..+.. ..
T Consensus        55 ~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~~~~~~~~~~~~i~v~d~~~~~-~~  128 (337)
T 1pby_B           55 SESLVKIDLVT---GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR--LELTHFEVQPTRVALYDAETLS-RR  128 (337)
T ss_dssp             TTEEEEEETTT---CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEE--ECSSCEEECCCEEEEEETTTTE-EE
T ss_pred             CCeEEEEECCC---CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccc--cccccccccCceEEEEECCCCc-EE
Confidence            46899999987   56665554321     15668999999999887632100  001111  23457788876542 22


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--C-------------------------------
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--G-------------------------------  122 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~-------------------------------  122 (321)
                      ..+.....+.+++|+|+|++|++.    ++.+.+||+... .+..+  +                               
T Consensus       129 ~~~~~~~~~~~~~~s~dg~~l~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          129 KAFEAPRQITMLAWARDGSKLYGL----GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             EEEECCSSCCCEEECTTSSCEEEE----SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             EEEeCCCCcceeEECCCCCEEEEe----CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeec
Confidence            223334567889999999988885    357888887432 22222  1                               


Q ss_pred             -----------------------------------CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756          123 -----------------------------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  167 (321)
Q Consensus       123 -----------------------------------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~  167 (321)
                                                         ......+.|+|||++|+++.     +.|.+||+.+++.+..+..+
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~v~~~d~~~~~~~~~~~~~  279 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLP  279 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECS
T ss_pred             cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC-----CeEEEEECCCCcCcceecCC
Confidence                                               11234589999999998873     79999999999888777654


Q ss_pred             -CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          168 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       168 -~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                       .+..++|+|||++|+++.      .++.+.+||+. ++.+
T Consensus       280 ~~~~~~~~s~dg~~l~~~~------~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          280 HSYYSVNVSTDGSTVWLGG------ALGDLAAYDAETLEKK  314 (337)
T ss_dssp             SCCCEEEECTTSCEEEEES------BSSEEEEEETTTCCEE
T ss_pred             CceeeEEECCCCCEEEEEc------CCCcEEEEECcCCcEE
Confidence             678899999999999875      48999999985 4444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.52  E-value=7.3e-13  Score=139.23  Aligned_cols=195  Identities=9%  Similarity=-0.007  Sum_probs=135.1

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccC-ccceEEeCCCCCeeEEEEEecccCCCceeecceeEE-EEEcCCCceeeeecCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRC-STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN-YLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~-~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~-~l~~~g~~~~~v~l~~~   82 (321)
                      +.|.+|++..   +. ......... ....+.|+ +|+.|++...            ...++ +++..+.....+. .+.
T Consensus       317 ~~i~~~~~~~---~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~------------~~~l~~~~d~~~~~~~~l~-~~~  378 (1045)
T 1k32_A          317 GQAFIQDVSG---TY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTR------------EGDFLGIYDYRTGKAEKFE-ENL  378 (1045)
T ss_dssp             TEEEEECTTS---SB-EEECSCCSCEEEEEECSS-SEEEEEEEET------------TEEEEEEEETTTCCEEECC-CCC
T ss_pred             CEEEEEcCCC---Cc-eEEccCCCcceEEeeeEc-CCCeEEEEEC------------CCceEEEEECCCCCceEec-CCc
Confidence            4566776655   33 223333333 56688999 9999887631            23577 7777776445554 667


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccC-------CCCCcEEE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFG-------NLPGDMAF  152 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~-------n~~g~i~i  152 (321)
                      ..+..++|||||+.|++.  ..++.+.+||+.+.....+   +...+..+.|||||++|++++..       +.++.|++
T Consensus       379 ~~~~~~~~SpDG~~la~~--~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVA--NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             cceeeeEECCCCCEEEEE--CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            889999999999999986  4567999999965543332   56778999999999999988631       12358999


Q ss_pred             EECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCC
Q 020756          153 WDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       153 wD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~  226 (321)
                      ||+.+++ +..+..+  .+..+.|||||++|++++.      ++...+|+.....+...+...++.+.++++....
T Consensus       457 ~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (1045)
T 1k32_A          457 YDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  525 (1045)
T ss_dssp             EETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES------CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             EECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec------ccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence            9999887 4444443  5677999999999999884      6777888764333322233456666666655443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.51  E-value=4.3e-13  Score=124.13  Aligned_cols=182  Identities=9%  Similarity=0.051  Sum_probs=114.3

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~-   82 (321)
                      ..|.+|++..   ++ +............+.||| +|+.|++.....    ..  .+...||.++..+.....+.-... 
T Consensus       168 ~~l~~~d~~~---g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~----~~--~~~~~l~~~d~~~~~~~~l~~~~~~  237 (388)
T 3pe7_A          168 CRLMRVDLKT---GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGP----HD--LVDARMWLINEDGTNMRKVKTHAEG  237 (388)
T ss_dssp             EEEEEEETTT---CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSC----TT--TSSCSEEEEETTSCCCEESCCCCTT
T ss_pred             ceEEEEECCC---Cc-eEEeecCCccccccEECCCCCCEEEEEEecC----CC--CCcceEEEEeCCCCceEEeeeCCCC
Confidence            6677888776   33 333333344567899999 999998874311    00  023358899887764444432222 


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCC---eEEEEeCCCceeEEe---CC-----cCeeeEEEcCCCCeEEEEccC------C
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPA---SATIFNKKCRPILEL---GS-----GPYNTVRWNPKGKFLCLAGFG------N  145 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~---~i~i~d~~~~~~~~~---~~-----~~~~~~~~sPdG~~l~~~g~~------n  145 (321)
                      ..+..+.|||||+.|+++......   .|.+||+.+.....+   ..     .....+.|||||+.|++....      .
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            257889999999988776432222   499999976543333   21     012224799999999875321      2


Q ss_pred             CCCcEEEEECCCCeEEEeeeCCC------------eeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          146 LPGDMAFWDYVDGKQLGTTRAEC------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       146 ~~g~i~iwD~~~~~~i~~~~~~~------------~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      .+..|++||+.+++.........            +..++|||||++|++++..     ++...||.+
T Consensus       318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-----~g~~~l~~~  380 (388)
T 3pe7_A          318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-----HGKPALYLA  380 (388)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEE
T ss_pred             CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC-----CCceeEEEE
Confidence            45789999999886544333322            6778999999999998852     555666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.51  E-value=1.9e-12  Score=119.91  Aligned_cols=211  Identities=10%  Similarity=0.029  Sum_probs=128.8

Q ss_pred             eEEEEEcC-CcCCCCceeeeecc-cCccceEEeCCCCCeeEEEEEecccCCCcee-------ecceeEEEEEcCCCceee
Q 020756            6 SVQIYACG-KDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY-------YGESKLNYLTTDGTHEGL   76 (321)
Q Consensus         6 ~v~v~~~~-~~~~~~~i~~~~~f-~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~-------~g~~~l~~l~~~g~~~~~   76 (321)
                      .|.+|++. .   ++.+.....- ......+.|+|+|++|++.+.. .. +-..|       .|...+|.++.+|.....
T Consensus        61 ~v~~~~~~~~---g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~-~~-~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~  135 (365)
T 1jof_A           61 KWSSFAVKSP---TEIVHEASHPIGGHPRANDADTNTRAIFLLAAK-QP-PYAVYANPFYKFAGYGNVFSVSETGKLEKN  135 (365)
T ss_dssp             EEEEEEEEET---TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS-ST-TCCEEEEEESSSCCEEEEEEECTTCCEEEE
T ss_pred             eEEEEEECCC---CCEEEeeEeecCCCCccEEECCCCCEEEEEEec-CC-cceeccceeecCCceEEEEccCCCCcCcce
Confidence            68999986 4   4433222211 1235678999999975443211 00 00001       133345555444543333


Q ss_pred             eec---CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-Ccee---EEe----CCcCeeeEEEcCCCCeEEEEccCC
Q 020756           77 VPL---RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPI---LEL----GSGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        77 v~l---~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~---~~~----~~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                      +..   .+...+++++|+|||++++++. ..+..|.+||+. ...+   ..+    +......+.|+|||++|++++.  
T Consensus       136 ~~~~~~~~~~~~~~~~~spdG~~l~~~~-~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--  212 (365)
T 1jof_A          136 VQNYEYQENTGIHGMVFDPTETYLYSAD-LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--  212 (365)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--
T ss_pred             EeeEEeCCCCcceEEEECCCCCEEEEEc-CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--
Confidence            332   2456799999999999887753 335699999986 3322   223    1345788999999999988762  


Q ss_pred             CCCcEEEEECC--CCeEE------EeeeCC------------CeeeEE-EccCCCEEEEEEcCCceeecC-----cEEEE
Q 020756          146 LPGDMAFWDYV--DGKQL------GTTRAE------------CSVTSE-WSPDGRYFMTATTAPRLQIDN-----GIKIF  199 (321)
Q Consensus       146 ~~g~i~iwD~~--~~~~i------~~~~~~------------~~~~~~-wSpdG~~l~t~~s~~rl~~d~-----~v~iw  199 (321)
                      .++.|.+|+++  +++..      ..+...            .+..++ |||||++|+++..     .++     .+.+|
T Consensus       213 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~-----~~~~~~~~~i~v~  287 (365)
T 1jof_A          213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR-----ANKFELQGYIAGF  287 (365)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE-----ESSTTSCCEEEEE
T ss_pred             CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC-----CCCCCCCCeEEEE
Confidence            45789999765  55532      222111            266799 9999999987663     234     79999


Q ss_pred             eec--CceeE---Ee--ccCceEEEEEec---CCCCCCCC
Q 020756          200 HHN--GSLFF---KK--MFDKLFQAEWKP---VSPDKFGD  229 (321)
Q Consensus       200 ~~~--g~~l~---~~--~~~~~~~~~w~P---~~~~~~~~  229 (321)
                      +++  |++..   ..  .......+.|+|   ++..++..
T Consensus       288 ~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             EECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             EECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence            984  55432   11  223456788999   67777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.50  E-value=5.8e-13  Score=127.10  Aligned_cols=160  Identities=15%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-----ce------eeeecCCCCCeEEEEECcC-CCE
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-----HE------GLVPLRKEGPVHDVQWSYS-GSE   96 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-----~~------~~v~l~~~~~v~~~~wsP~-g~~   96 (321)
                      .....+.|+|+|++|++...+.      +..+.  +.++++...     ..      ..+...|.+.|.+++|+|+ +..
T Consensus        93 ~~v~~l~~spdg~~lav~~~sg------s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  164 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSS------EYGSI--IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM  164 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEET------TTEEE--EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred             CcccEEEEcCCCCEEEEEEecc------CCCce--EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence            4578899999999998742110      11122  444443221     00      1122236889999999998 777


Q ss_pred             EEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC------
Q 020756           97 FAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------  167 (321)
Q Consensus        97 l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~------  167 (321)
                      |+++  ..|+.+++||++.. .+...  |...+.+++|||+|++|++++   .+|.|.+||++ ++....+..+      
T Consensus       165 las~--s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---~dg~v~iwd~~-~~~~~~~~~~~~~~~~  238 (434)
T 2oit_A          165 VAVC--LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---QNGTVVQYLPT-LQEKKVIPCPPFYESD  238 (434)
T ss_dssp             EEEE--ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---TTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred             EEEE--ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---CCCcEEEEccC-CcccccccCCcccCCC
Confidence            8775  66899999999754 22222  577899999999999999999   89999999998 5444433321      


Q ss_pred             ---CeeeEEEccCCCEEEEEEcC-CceeecCcEEEEeec
Q 020756          168 ---CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHHN  202 (321)
Q Consensus       168 ---~~~~~~wSpdG~~l~t~~s~-~rl~~d~~v~iw~~~  202 (321)
                         .+..++|++++.++++..+. .++.....+++|++.
T Consensus       239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence               56789999999998776642 111122358999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.49  E-value=2.5e-13  Score=125.57  Aligned_cols=200  Identities=13%  Similarity=0.026  Sum_probs=126.0

Q ss_pred             CCceeeeecccCc-----cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECc
Q 020756           18 SQPLARRSFFRCS-----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY   92 (321)
Q Consensus        18 ~~~i~~~~~f~~~-----~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP   92 (321)
                      ++.+.+.+.....     ...+.|||+|++|++....         .|...||.++..+.....+..........+.|||
T Consensus        20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~---------~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp   90 (396)
T 3c5m_A           20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF---------DGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST   90 (396)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---------TSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred             CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec---------CCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence            5556555543222     5678999999999887432         1334588888877644444322222233488999


Q ss_pred             CCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeee-------------------EEEcCCCCeEEEEc--cCCCCC
Q 020756           93 SGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNT-------------------VRWNPKGKFLCLAG--FGNLPG  148 (321)
Q Consensus        93 ~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~-------------------~~~sPdG~~l~~~g--~~n~~g  148 (321)
                      ||+.|+++.  .+..+.+||+.+.....+   +......                   +.|+|+|+.+++..  ..+.+.
T Consensus        91 dg~~l~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           91 DERAFFYVK--NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC  168 (396)
T ss_dssp             TSSEEEEEE--TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred             CCCEEEEEE--cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence            999998874  345899999966533332   2221111                   35677777766543  112457


Q ss_pred             cEEEEECCCCeEEEeeeCC-CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCceeEEe--c--cCceEEEEEecC
Q 020756          149 DMAFWDYVDGKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--M--FDKLFQAEWKPV  222 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~-~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~--~~~~~~~~w~P~  222 (321)
                      .|++||+.+++........ .+..+.||| ||++|++.+..+.......|.+|++.+..+...  +  ...+..+.|+|+
T Consensus       169 ~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          169 RLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD  248 (396)
T ss_dssp             EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred             eEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence            8999999988665544433 678899999 899888877421110115688888866543221  2  124777899999


Q ss_pred             CCCCCC
Q 020756          223 SPDKFG  228 (321)
Q Consensus       223 ~~~~~~  228 (321)
                      +..++-
T Consensus       249 g~~l~~  254 (396)
T 3c5m_A          249 GSAMAY  254 (396)
T ss_dssp             SSCEEE
T ss_pred             CCEEEE
Confidence            987653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.48  E-value=9.2e-13  Score=131.10  Aligned_cols=179  Identities=11%  Similarity=0.034  Sum_probs=116.3

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccc---------eEEeC--CCCCe-eEEEEEecccCCCceeecceeEEEEEcC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTV---------QLNWN--RGSTG-LLAVAQSDVDKTNQSYYGESKLNYLTTD   70 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~---------~~~Ws--p~G~~-l~~~~~~d~d~t~~s~~g~~~l~~l~~~   70 (321)
                      ..+..+||.+..   +....+.+....+..         .+.|+  |||+. |++..    +.       ...||.++..
T Consensus        45 ~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~----~~-------~~~l~~~~~~  110 (662)
T 3azo_A           45 EAGRATLVRRRA---DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH----FG-------DQRLYAFEPD  110 (662)
T ss_dssp             TTTEEEEEEECT---TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB----TT-------TCCEEEECTT
T ss_pred             cCCcEEEEEECC---CCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE----CC-------CCeEEEEcCC
Confidence            346788999744   444555554443333         56676  99999 76642    11       2348888887


Q ss_pred             --C-CceeeeecC----CCCCeEEEEECcCCCEEEEEEccC--------CCeEEEEeCCC------ceeEEeC---CcCe
Q 020756           71 --G-THEGLVPLR----KEGPVHDVQWSYSGSEFAVVYGFM--------PASATIFNKKC------RPILELG---SGPY  126 (321)
Q Consensus        71 --g-~~~~~v~l~----~~~~v~~~~wsP~g~~l~~~~g~~--------~~~i~i~d~~~------~~~~~~~---~~~~  126 (321)
                        + .....+.-.    +...+.+++|||||+.|+++....        ...|.+||+.+      .....+.   ...+
T Consensus       111 ~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~  190 (662)
T 3azo_A          111 APGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFV  190 (662)
T ss_dssp             STTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEE
T ss_pred             CCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcc
Confidence              3 433333321    455788999999999999874321        14789999977      5555543   3456


Q ss_pred             eeEEEcCCCCeEEEEccCC-----CCCcEEEEECC-CC---eEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecC-
Q 020756          127 NTVRWNPKGKFLCLAGFGN-----LPGDMAFWDYV-DG---KQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDN-  194 (321)
Q Consensus       127 ~~~~~sPdG~~l~~~g~~n-----~~g~i~iwD~~-~~---~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~-  194 (321)
                      ..+.|||||++|++++...     ....|++||+. ++   +.......  ..+..+.|||||++++++.      .++ 
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~------~~~~  264 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD------RTGW  264 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC------TTSS
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC------CCCC
Confidence            7799999999999876321     12489999998 56   44444433  3678899999999554444      255 


Q ss_pred             -cEEEEee
Q 020756          195 -GIKIFHH  201 (321)
Q Consensus       195 -~v~iw~~  201 (321)
                       .|.+|+.
T Consensus       265 ~~l~~~~~  272 (662)
T 3azo_A          265 WNLHRVDP  272 (662)
T ss_dssp             CEEEEECT
T ss_pred             eEEEEEEC
Confidence             4555555

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.47  E-value=9.5e-12  Score=122.09  Aligned_cols=179  Identities=12%  Similarity=0.129  Sum_probs=127.5

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCceeeeecCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPLRK   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~~~v~l~~   81 (321)
                      .+.|+||+..+   ++.+........ ...+.+||+|++|++..   .|         ..|..++.  ... .....+..
T Consensus       158 d~~V~v~D~~t---~~~~~~i~~g~~-~~~v~~spdg~~l~v~~---~d---------~~V~v~D~~~~t~-~~~~~i~~  220 (543)
T 1nir_A          158 AGQIALVDGDS---KKIVKVIDTGYA-VHISRMSASGRYLLVIG---RD---------ARIDMIDLWAKEP-TKVAEIKI  220 (543)
T ss_dssp             GTEEEEEETTT---CCEEEEEECSTT-EEEEEECTTSCEEEEEE---TT---------SEEEEEETTSSSC-EEEEEEEC
T ss_pred             CCeEEEEECCC---ceEEEEEecCcc-cceEEECCCCCEEEEEC---CC---------CeEEEEECcCCCC-cEEEEEec
Confidence            47899999988   677766664333 55778999999998863   11         23667777  322 23333445


Q ss_pred             CCCeEEEEECc----CCCEEEEEEccCCCeEEEEeCCC-ceeEEeC-------------CcCeeeEEEcCCCCeEEEEcc
Q 020756           82 EGPVHDVQWSY----SGSEFAVVYGFMPASATIFNKKC-RPILELG-------------SGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        82 ~~~v~~~~wsP----~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~-------------~~~~~~~~~sPdG~~l~~~g~  143 (321)
                      ...+..++|||    ||+++++. +..++.+.+||... +.+..+.             ...+..+.++|++..++++..
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~-~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAG-AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEE-EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCcceEEeCCCcCCCCCEEEEE-EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            56679999999    99998886 34578999999854 4444441             125778999999887777652


Q ss_pred             CCCCCcEEEEECCCCeEEE--eeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeE
Q 020756          144 GNLPGDMAFWDYVDGKQLG--TTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFF  207 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~~i~--~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~  207 (321)
                        .++.|.+||+.+.+.+.  .+.. ..+..+.|+|||++|+++..     .++.|.+||.. |+++.
T Consensus       300 --~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~-----~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          300 --ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN-----NSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             --TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEE
T ss_pred             --CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec-----CCCeEEEEECCCCeEEE
Confidence              56899999998764322  3433 36778999999999888775     48999999984 55553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.44  E-value=2.3e-11  Score=110.15  Aligned_cols=184  Identities=13%  Similarity=0.102  Sum_probs=120.8

Q ss_pred             CCceEEEEEcCCcCCCCceeeeeccc------CccceEEeCCCCCeeEEEEEecccCCCceee-cceeEEEEEcCCCce-
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFR------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHE-   74 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~------~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~-g~~~l~~l~~~g~~~-   74 (321)
                      ..+.|.+|++.+   ++.+.......      .....+.|+|+|++|++.... .......|. ....|+.++...... 
T Consensus        63 ~~~~i~~~d~~t---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           63 HYGDIYGIDLDT---CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP-TQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             TTTEEEEEETTT---TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE-EEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCCcEEEEeCCC---CcEEEEEEcccccccccccccceEECCCCCEEEEEccc-ccccccccccCCCeEEEEECCCcccc
Confidence            356899999887   55555444322      125688999999999886421 111111111 124577777654211 


Q ss_pred             e-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEeCCc----------------------------
Q 020756           75 G-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELGSG----------------------------  124 (321)
Q Consensus        75 ~-~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~~~----------------------------  124 (321)
                      . .....+...+.+++|+|+|+ +++. +   ..+.+||... +.+..+...                            
T Consensus       139 ~~~~~~~~~~~~~~~~~s~dg~-l~~~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          139 KPVRTFPMPRQVYLMRAADDGS-LYVA-G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             CCSEEEECCSSCCCEEECTTSC-EEEE-S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             ceeeeccCCCcccceeECCCCc-EEEc-c---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence            1 11222344688999999999 5553 2   2499999854 333333111                            


Q ss_pred             ------------------------------------------CeeeEEEcC-CCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756          125 ------------------------------------------PYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus       125 ------------------------------------------~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                                                                ....+.|+| +|++|+++     ++.|.+||+.+++.+
T Consensus       214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~  288 (349)
T 1jmx_B          214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLI  288 (349)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEE
T ss_pred             eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEE
Confidence                                                      234567889 99998887     379999999999888


Q ss_pred             EeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          162 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       162 ~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                      ..+... .+..++|+|||++|+++.      .++.+.+||.. ++.+
T Consensus       289 ~~~~~~~~~~~~~~s~dg~~l~~~~------~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          289 KAANLDHTYYCVAFDKKGDKLYLGG------TFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             EEEECSSCCCEEEECSSSSCEEEES------BSSEEEEEETTTTEEE
T ss_pred             EEEcCCCCccceEECCCCCEEEEec------CCCeEEEEecccccee
Confidence            777643 677899999999998865      38899999995 4444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.44  E-value=8.8e-12  Score=123.99  Aligned_cols=184  Identities=9%  Similarity=-0.030  Sum_probs=117.1

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC------CceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG------THEGLVPLRKEGPVHDVQWSYSGSEFAVVYG  102 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g------~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g  102 (321)
                      .....+.|||||+.|++......+.  ....+...|+.++..+      +....+...+...+..++|||||++|+++..
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGE--GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSS--STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             ccccCcEECCCCCEEEEEEecccCC--CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            4556889999999998865321100  0112445799999887      4333332134567888999999999998753


Q ss_pred             cC------CCeEEEEeCCC-c---eeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCC--cEEEEECCCCeEEEeeeCC
Q 020756          103 FM------PASATIFNKKC-R---PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDGKQLGTTRAE  167 (321)
Q Consensus       103 ~~------~~~i~i~d~~~-~---~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g--~i~iwD~~~~~~i~~~~~~  167 (321)
                      ..      ...|.+||+.+ .   ....+   +...+..+.|||||++++++.   .++  .|++||+.+++.......+
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD---RTGWWNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC---TTSSCEEEEECTTTCCEEESSCCS
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC---CCCCeEEEEEECCCCceeeccccc
Confidence            32      14799999973 3   33333   357888999999999555554   445  7888888777655443332


Q ss_pred             -C---------eeeEEEccCCCEEEEEEcCCceeecCcEEEE--eecCceeEE--eccCceEEEEEecCCCC
Q 020756          168 -C---------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIF--HHNGSLFFK--KMFDKLFQAEWKPVSPD  225 (321)
Q Consensus       168 -~---------~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw--~~~g~~l~~--~~~~~~~~~~w~P~~~~  225 (321)
                       .         +..++|+|+|++++++.      . +.++||  +..+..+..  .+...+..+ |++++..
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~------~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~  348 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLANGLIAVVHG------K-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTR  348 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTTSCEEEEEB------S-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTE
T ss_pred             ccccCccccccCceEeEeCCCEEEEEEE------c-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCE
Confidence             1         45688899999887776      3 667777  545444422  233344443 3554443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.42  E-value=2.2e-11  Score=119.51  Aligned_cols=203  Identities=13%  Similarity=0.092  Sum_probs=138.1

Q ss_pred             CceEEEEEc--CCcCCCCceeeeecccCccceEEeCC----CCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceee
Q 020756            4 PASVQIYAC--GKDLQSQPLARRSFFRCSTVQLNWNR----GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGL   76 (321)
Q Consensus         4 p~~v~v~~~--~~~~~~~~i~~~~~f~~~~~~~~Wsp----~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~   76 (321)
                      .+.|++|++  .+   ++.+.+... ......+.|||    +|++|++...           ....+.+++.... ....
T Consensus       199 d~~V~v~D~~~~t---~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~-----------~~~~v~v~D~~t~~~~~~  263 (543)
T 1nir_A          199 DARIDMIDLWAKE---PTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAY-----------WPPQFAIMDGETLEPKQI  263 (543)
T ss_dssp             TSEEEEEETTSSS---CEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEE-----------ESSEEEEEETTTCCEEEE
T ss_pred             CCeEEEEECcCCC---CcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEc-----------cCCeEEEEecccccccee
Confidence            478999999  56   566666553 34678999999    9999887532           1223455554332 1222


Q ss_pred             eecC----------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEe-CCcCeeeEEEcCCCCeEEEEc
Q 020756           77 VPLR----------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL-GSGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        77 v~l~----------~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~-~~~~~~~~~~sPdG~~l~~~g  142 (321)
                      +...          .+..+..+.++|++..+++. ...+++|.+||+...   .+..+ +......+.|+|+|++|++++
T Consensus       264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs-~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN-VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             EECCEECSSSCCEESCCCEEEEEECSSSSEEEEE-ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred             ecccCcccCccccccCCceEEEEECCCCCEEEEE-ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEe
Confidence            2221          13378899999999988776 456789999998542   22244 345577899999999888766


Q ss_pred             cCCCCCcEEEEECCCCeEEEeeeC----CCeeeEE-EccC-CCEEEEEEcCCceeecCcEEEEeec--------CceeEE
Q 020756          143 FGNLPGDMAFWDYVDGKQLGTTRA----ECSVTSE-WSPD-GRYFMTATTAPRLQIDNGIKIFHHN--------GSLFFK  208 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~~~i~~~~~----~~~~~~~-wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~--------g~~l~~  208 (321)
                      .  .+++|.+||+.+++++..+..    |....+. ++|+ |+.++++..     .|+.|.||++.        ++.+..
T Consensus       343 ~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~-----~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          343 N--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL-----GDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             G--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBS-----SSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             c--CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccC-----CCceEEEEEeCCCCCchhcCeEEEE
Confidence            2  468999999999998888764    2111223 4787 555555542     27899999995        355533


Q ss_pred             e--ccCceEEEEEecCCCCCCCC
Q 020756          209 K--MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       209 ~--~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .  +......+.++|++..++..
T Consensus       416 l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             EECSCSCCCCEECCTTCCEEEEC
T ss_pred             EEcCCCCceEEEcCCCCCcEEEe
Confidence            3  44567789999999988865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.42  E-value=1.4e-11  Score=114.01  Aligned_cols=185  Identities=10%  Similarity=0.065  Sum_probs=118.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecc----cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceee-
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFF----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGL-   76 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f----~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~-   76 (321)
                      ..+.+.||++...  ++.......+    ......+.|+|+|++|++..   .        +...|+.++.+ .+.... 
T Consensus       117 ~~g~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~---~--------~~~~v~~~~~~~~g~~~~~  183 (365)
T 1jof_A          117 FAGYGNVFSVSET--GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD---L--------TANKLWTHRKLASGEVELV  183 (365)
T ss_dssp             SCCEEEEEEECTT--CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE---T--------TTTEEEEEEECTTSCEEEE
T ss_pred             CCceEEEEccCCC--CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc---C--------CCCEEEEEEECCCCCEEEe
Confidence            4678999999741  3333333321    23566889999999886641   1        22345666654 222221 


Q ss_pred             --eecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC---Ccee---EEe---CC-----c-------CeeeEE-E
Q 020756           77 --VPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPI---LEL---GS-----G-------PYNTVR-W  131 (321)
Q Consensus        77 --v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~---~~~~---~~~---~~-----~-------~~~~~~-~  131 (321)
                        +.+. +...+..++|+|||++++++ ...++.+.+|+++   +...   ..+   ..     .       ....+. |
T Consensus       184 ~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  262 (365)
T 1jof_A          184 GSVDAPDPGDHPRWVAMHPTGNYLYAL-MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             eeEecCCCCCCCCEeEECCCCCEEEEE-ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence              2222 35568899999999998876 3446789999764   2221   122   11     1       367899 9


Q ss_pred             cCCCCeEEEEccCCC---CCcEEEEECC-CCeEEE---eeeCC--CeeeEEEcc---CCCEEEEEEcCCceeecCcEEEE
Q 020756          132 NPKGKFLCLAGFGNL---PGDMAFWDYV-DGKQLG---TTRAE--CSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       132 sPdG~~l~~~g~~n~---~g~i~iwD~~-~~~~i~---~~~~~--~~~~~~wSp---dG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      ||||++|+++..+..   .+.|.+||++ +++...   ....+  ....++|||   ||++|+++..     .++.|.||
T Consensus       263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~-----~~~~v~v~  337 (365)
T 1jof_A          263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-----QEGWLEIY  337 (365)
T ss_dssp             CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS-----SSCEEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc-----CCCeEEEE
Confidence            999999987653211   2389999986 565432   13222  466789999   8999999874     25899999


Q ss_pred             eecCcee
Q 020756          200 HHNGSLF  206 (321)
Q Consensus       200 ~~~g~~l  206 (321)
                      +++++.+
T Consensus       338 ~~~~~~l  344 (365)
T 1jof_A          338 RWKDEFL  344 (365)
T ss_dssp             EEETTEE
T ss_pred             EEchhhC
Confidence            9987644

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.41  E-value=2.4e-11  Score=110.73  Aligned_cols=199  Identities=10%  Similarity=0.103  Sum_probs=120.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      +.|.+|++..   ++. .+.    .....+.|||||++|+++....    +.   +...||.++..++....+.. ... 
T Consensus        43 ~~l~~~d~~~---~~~-~~l----~~~~~~~~SpDg~~la~~~~~~----~~---~~~~l~~~~~~~g~~~~l~~-~~~-  105 (347)
T 2gop_A           43 NTIVIENLKN---NAR-RFI----ENATMPRISPDGKKIAFMRANE----EK---KVSEIWVADLETLSSKKILE-AKN-  105 (347)
T ss_dssp             EEEEEEETTT---CCE-EEE----ESCEEEEECTTSSEEEEEEEET----TT---TEEEEEEEETTTTEEEEEEE-ESE-
T ss_pred             ceEEEEeCCC---Cce-EEc----ccCCCeEECCCCCEEEEEEecc----CC---CcceEEEEECCCCceEEEEc-CCC-
Confidence            4566666665   332 222    4566789999999999874321    11   34468999987764444432 233 


Q ss_pred             eEEEEECcCCCEEEEEEcc-------------------------CCCeEEEEeCCCcee-EEeCCcCeeeEEEcCCCCeE
Q 020756           85 VHDVQWSYSGSEFAVVYGF-------------------------MPASATIFNKKCRPI-LELGSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~-------------------------~~~~i~i~d~~~~~~-~~~~~~~~~~~~~sPdG~~l  138 (321)
                      +..+.|+|||+.|+++...                         ....|.+||+.+... ..+....+..+.|+||| ++
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~  184 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IV  184 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EE
Confidence            9999999999999987421                         024688899966544 44411277889999999 66


Q ss_pred             EEEccCCC------CCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCcee--ecCcEEEEeecCcee--EE
Q 020756          139 CLAGFGNL------PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ--IDNGIKIFHHNGSLF--FK  208 (321)
Q Consensus       139 ~~~g~~n~------~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~--~d~~v~iw~~~g~~l--~~  208 (321)
                      +++.....      ...|+++|  +++.......  .....+||||++|++++......  ....|.+|| +|+..  ..
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~  259 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK--VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILD  259 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE--ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESST
T ss_pred             EEEecccccccccccccEEEeC--CCceEEeccC--cceeeECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccc
Confidence            65542211      23566666  5544332222  23334599999999888521100  124677888 66543  22


Q ss_pred             eccCceEE-EEEecCCCCCCC
Q 020756          209 KMFDKLFQ-AEWKPVSPDKFG  228 (321)
Q Consensus       209 ~~~~~~~~-~~w~P~~~~~~~  228 (321)
                      .+...+.. +.|+ +. .++.
T Consensus       260 ~~~~~~~~~~~~s-dg-~~~~  278 (347)
T 2gop_A          260 EVDRGVGQAKIKD-GK-VYFT  278 (347)
T ss_dssp             TCCSEEEEEEEET-TE-EEEE
T ss_pred             cCCcccCCccEEc-Cc-EEEE
Confidence            22345665 8898 65 4443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.40  E-value=4.7e-12  Score=116.94  Aligned_cols=166  Identities=8%  Similarity=0.018  Sum_probs=108.6

Q ss_pred             ceeEEEEEcCCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccCC----CeEEEEeCCCceeEEeCC----cCeeeEEE
Q 020756           61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP----ASATIFNKKCRPILELGS----GPYNTVRW  131 (321)
Q Consensus        61 ~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~~----~~i~i~d~~~~~~~~~~~----~~~~~~~~  131 (321)
                      ...|+.++..++....+. .+...+..+.|+| +|+.|+++.....    ..|.+||+.+.....+..    ..+..+.|
T Consensus       167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~  245 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW  245 (396)
T ss_dssp             CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred             cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence            346888888765444333 4567789999999 8988888754222    478899987765555522    24677899


Q ss_pred             cCCCCeEEEEccCCCC--CcEEEEECCCCeEEEeeeCCCeeeEEEcc-CCCEEEEEEcC-C---------ceeecCcEEE
Q 020756          132 NPKGKFLCLAGFGNLP--GDMAFWDYVDGKQLGTTRAECSVTSEWSP-DGRYFMTATTA-P---------RLQIDNGIKI  198 (321)
Q Consensus       132 sPdG~~l~~~g~~n~~--g~i~iwD~~~~~~i~~~~~~~~~~~~wSp-dG~~l~t~~s~-~---------rl~~d~~v~i  198 (321)
                      ||||++|++.+..+..  +.|++||+.+++........... +.|+| ||++|+++.+. |         ....+..+.+
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            9999998887632222  34999999888654433333333 89999 99988876531 0         0012467999


Q ss_pred             EeecCcee--EEeccC-----------ceEEEEEecCCCCCCC
Q 020756          199 FHHNGSLF--FKKMFD-----------KLFQAEWKPVSPDKFG  228 (321)
Q Consensus       199 w~~~g~~l--~~~~~~-----------~~~~~~w~P~~~~~~~  228 (321)
                      ||+.+..+  ...+..           ....+.|+|++..++.
T Consensus       325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  367 (396)
T 3c5m_A          325 LNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF  367 (396)
T ss_dssp             EETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             EecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence            99865433  222222           1456789998776553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.38  E-value=3.7e-11  Score=109.39  Aligned_cols=180  Identities=9%  Similarity=0.076  Sum_probs=110.5

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC---CCeE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM---PASA  108 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~---~~~i  108 (321)
                      ..+.|  ||+.|++..... +.....  ....||+++..+.....+     ..+..+.|||||++|+++....   ...|
T Consensus        18 ~~~~~--dG~~i~~~~~~~-~~~~~~--~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           18 SDPRT--KGELVAYVLTKA-NLKDNK--YENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             EEEEE--ETTEEEEEEEEE-ETTTTE--EEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             ccceE--CCcEEEEEEeec-CcccCC--ccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            35566  999998875432 111112  244688988887644443     5688999999999999875332   2257


Q ss_pred             EEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccC------------------------CCCCcEEEEECCCCeEEE
Q 020756          109 TIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFG------------------------NLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus       109 ~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~------------------------n~~g~i~iwD~~~~~~i~  162 (321)
                      .++|+.+.....+  +.. +..+.|||||+.|++++..                        .....|++||+.+++.+.
T Consensus        88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            7888866544333  233 8999999999999998632                        013579999999887622


Q ss_pred             eeeCCCeeeEEEccCCCEEEEEEcCCcee--e-cCcEEEEeecCcee-EEeccCceEEEEEecCCCCCC
Q 020756          163 TTRAECSVTSEWSPDGRYFMTATTAPRLQ--I-DNGIKIFHHNGSLF-FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~--~-d~~v~iw~~~g~~l-~~~~~~~~~~~~w~P~~~~~~  227 (321)
                      .+....+..+.||||| +++++.......  . ...+.+++ .|+.. ...+ ..+.  .++|++..++
T Consensus       167 ~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~--~~spdg~~l~  230 (347)
T 2gop_A          167 EFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFY--AVDSDGERIL  230 (347)
T ss_dssp             EEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEE--EEEECSSCEE
T ss_pred             eecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-ccee--eECCCCCEEE
Confidence            2221267789999999 655554210000  0 11344455 44432 2222 3333  4488887765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.27  E-value=4.1e-10  Score=113.45  Aligned_cols=189  Identities=8%  Similarity=-0.014  Sum_probs=119.4

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC------
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM------  104 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~------  104 (321)
                      ...+.|||||++|++....    .|..   ...|+++++.++......+.. ..+.+++|+|||+.|++.....      
T Consensus       127 ~~~~~~SPDg~~la~~~~~----~G~~---~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSA----SGSD---WVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEE----TTCS---CEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             EEEEEECCCCCEEEEEEcC----CCCc---eEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccc
Confidence            4578999999999987542    1221   125899998876444433322 2367899999999999875332      


Q ss_pred             --------CCeEEEEeCCCce---eEEe----CCcCeeeEEEcCCCCeEEEEccCCC--CCcEEEEECCC------Ce-E
Q 020756          105 --------PASATIFNKKCRP---ILEL----GSGPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVD------GK-Q  160 (321)
Q Consensus       105 --------~~~i~i~d~~~~~---~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~--~g~i~iwD~~~------~~-~  160 (321)
                              +..|.+|++.+..   ...+    +...+..+.|||||++|++......  +..|++||+.+      +. .
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                    2359999986542   2322    2334678999999999998764222  57899999976      42 2


Q ss_pred             EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-----eeEEeccC--ceEEEEEecCCCCCCCC
Q 020756          161 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-----LFFKKMFD--KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       161 i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-----~l~~~~~~--~~~~~~w~P~~~~~~~~  229 (321)
                      +..+..+ ......|+|||+.|+..+..-  .....|.+|++.+.     .....+..  .+..+.|.+....++..
T Consensus       279 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~  353 (710)
T 2xdw_A          279 WVKLIDNFEGEYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (710)
T ss_dssp             CEEEECSSSSCEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             eEEeeCCCCcEEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence            3333332 223346999999999887520  01235888888542     12222322  57778888655444443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.27  E-value=1.5e-10  Score=116.64  Aligned_cols=182  Identities=12%  Similarity=0.062  Sum_probs=114.1

Q ss_pred             CCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee----ecC--CCCCeEEEEECcCCCEEEEEEccCC---Ce
Q 020756           37 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV----PLR--KEGPVHDVQWSYSGSEFAVVYGFMP---AS  107 (321)
Q Consensus        37 sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v----~l~--~~~~v~~~~wsP~g~~l~~~~g~~~---~~  107 (321)
                      +|+|+++++....    .++.   ...||.++..+.....+    .+.  +...+..++|||||++|++......   ..
T Consensus        80 ~~dG~~~~~~~~~----~~~~---~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~  152 (710)
T 2xdw_A           80 FKKGKRYFYFYNT----GLQN---QRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVT  152 (710)
T ss_dssp             EEETTEEEEEEEC----SSCS---SCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEE
T ss_pred             EEECCEEEEEEEc----CCce---EEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEE
Confidence            3899999887432    1221   11467777655433322    112  2235889999999999998643222   28


Q ss_pred             EEEEeCCCceeEE--eCCcCeeeEEEcCCCCeEEEEccCCC-------------CCcEEEEECCCCe----EEEeeeCC-
Q 020756          108 ATIFNKKCRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNL-------------PGDMAFWDYVDGK----QLGTTRAE-  167 (321)
Q Consensus       108 i~i~d~~~~~~~~--~~~~~~~~~~~sPdG~~l~~~g~~n~-------------~g~i~iwD~~~~~----~i~~~~~~-  167 (321)
                      |.+||+.+.....  +....+..+.|||||+.|+++.....             ...|++|++.++.    ++.....+ 
T Consensus       153 i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~  232 (710)
T 2xdw_A          153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP  232 (710)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             EEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence            9999997654443  33334678999999999999873211             2349999998764    33333222 


Q ss_pred             -CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-------c--ee-EEeccCceEEEEEecCCCCCC
Q 020756          168 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-------S--LF-FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       168 -~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-------~--~l-~~~~~~~~~~~~w~P~~~~~~  227 (321)
                       ....+.|||||++|+..+.... ..++.+++||+.+       .  .. ...+...... .|+|++..++
T Consensus       233 ~~~~~~~~SpDg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~  301 (710)
T 2xdw_A          233 KWMGGAELSDDGRYVLLSIREGC-DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFT  301 (710)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSS-SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEE
T ss_pred             eEEEEEEEcCCCCEEEEEEEccC-CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEE
Confidence             3678999999999998874110 0156799999864       2  22 3333333433 4777766554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.26  E-value=1.7e-10  Score=116.01  Aligned_cols=179  Identities=12%  Similarity=0.115  Sum_probs=111.2

Q ss_pred             eCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec------CCCCCeEEEEECcCCCEEEEEE---ccCCC
Q 020756           36 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL------RKEGPVHDVQWSYSGSEFAVVY---GFMPA  106 (321)
Q Consensus        36 Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l------~~~~~v~~~~wsP~g~~l~~~~---g~~~~  106 (321)
                      .+|+|+++++.....    ++.   ...||.++..+.....+.-      .+...+..++|||||++|++..   |....
T Consensus        75 p~~dG~~~~~~~~~~----~~~---~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~  147 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHK----DKE---KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA  147 (695)
T ss_dssp             CEEETTEEEEEEECT----TCS---SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred             CEEECCEEEEEEEcC----CCe---EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceE
Confidence            458999998864321    211   1246787776654444321      1334688999999999999764   33346


Q ss_pred             eEEEEeCCCceeE---EeCCcCeeeEEEcCCCCeEEEEccCC----------CCCcEEEEECCCCe----EEEeeeCC--
Q 020756          107 SATIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGFGN----------LPGDMAFWDYVDGK----QLGTTRAE--  167 (321)
Q Consensus       107 ~i~i~d~~~~~~~---~~~~~~~~~~~~sPdG~~l~~~g~~n----------~~g~i~iwD~~~~~----~i~~~~~~--  167 (321)
                      .|.+||+.+....   .+.......+.|||||+.|++++...          ....|++|++.++.    ++.....+  
T Consensus       148 ~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~  227 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPT  227 (695)
T ss_dssp             EEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTT
T ss_pred             EEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCE
Confidence            8999999765443   22222236899999999999988321          12349999998764    44443333  


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee-EEeccCceEEEEEecCCC
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF-FKKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l-~~~~~~~~~~~~w~P~~~  224 (321)
                      .+..+.|||||++|+.++....  ..+.+.+|+.. +... ...+........| |++.
T Consensus       228 ~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~  283 (695)
T 2bkl_A          228 TFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR  283 (695)
T ss_dssp             CEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE
T ss_pred             EEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc
Confidence            5678999999999998874100  01256666653 3322 3334444555556 4443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.24  E-value=6e-09  Score=96.65  Aligned_cols=206  Identities=10%  Similarity=0.088  Sum_probs=129.6

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEeccc-CCCceeecceeEEEEEcCCC-ceeeeecC-
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD-KTNQSYYGESKLNYLTTDGT-HEGLVPLR-   80 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d-~t~~s~~g~~~l~~l~~~g~-~~~~v~l~-   80 (321)
                      .+.|.+|+..+   ++.+........ . .+.++|+|++|++....... ..|.   ....+..++.... ....+.+. 
T Consensus        30 d~~v~v~D~~t---~~~~~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~---~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           30 ESRVHVYDYTN---GKFLGMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGK---RSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             GCEEEEEETTT---CCEEEEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSC---EEEEEEEEETTTCCEEEEEEECT
T ss_pred             cCeEEEEECCC---CeEEEEecCCCC-C-ceEECCCCCEEEEEEecccccccCC---CCCEEEEEECcCCcEEEEEEcCc
Confidence            45788998877   666655554433 3 89999999999886321100 0011   1224666666432 22334332 


Q ss_pred             ----CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEE-e--------------------------------C
Q 020756           81 ----KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILE-L--------------------------------G  122 (321)
Q Consensus        81 ----~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~-~--------------------------------~  122 (321)
                          +......++++|||++|++.....++.|.+||+... .+.. +                                .
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence                123467899999999998863222457888876321 1111 0                                0


Q ss_pred             C-cC----------------------------------------------------------------------eeeEEE
Q 020756          123 S-GP----------------------------------------------------------------------YNTVRW  131 (321)
Q Consensus       123 ~-~~----------------------------------------------------------------------~~~~~~  131 (321)
                      . +.                                                                      ...+.|
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~  261 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL  261 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred             CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence            0 00                                                                      001677


Q ss_pred             cCCCCeEEEEccCC--------CCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-
Q 020756          132 NPKGKFLCLAGFGN--------LPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-  202 (321)
Q Consensus       132 sPdG~~l~~~g~~n--------~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-  202 (321)
                      +|+|+.+.++...+        ....|.+||+.+++.+..+..+....++|||||++|+++.       ++.|.|||.. 
T Consensus       262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n-------~~~v~v~D~~t  334 (361)
T 2oiz_A          262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLD-------GGNVNVYDISQ  334 (361)
T ss_dssp             ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEEC-------SSCEEEEECSS
T ss_pred             ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeC-------CCeEEEEECCC
Confidence            88888777654201        1358999999999999888765588899999999888766       3899999984 


Q ss_pred             C--ceeEEe-c-cCceEEEEEecCCC
Q 020756          203 G--SLFFKK-M-FDKLFQAEWKPVSP  224 (321)
Q Consensus       203 g--~~l~~~-~-~~~~~~~~w~P~~~  224 (321)
                      +  +.+... . -.....+.++|++.
T Consensus       335 ~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          335 PEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CcceeeEEeccCCCCcEEEEecCCCC
Confidence            5  555443 2 24567888988763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.16  E-value=3.8e-08  Score=87.12  Aligned_cols=155  Identities=14%  Similarity=0.169  Sum_probs=109.9

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC----CcCeeeEEEcCCCCe
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGPYNTVRWNPKGKF  137 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~----~~~~~~~~~sPdG~~  137 (321)
                      ..|+.++.++.....+.......+++++++|+|+.++.  ....+.|.+||..+..+..+.    ....+.++++|+|++
T Consensus       100 ~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          100 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVV--ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEE--ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             CEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEE--ECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            35677776665433343334457899999999985544  344679999998887776662    245788999999997


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEeeeC----CCeeeEEEccCCCEEEEEEcCCceeecC-cEEEEeecCceeEEe--c
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDN-GIKIFHHNGSLFFKK--M  210 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~~~~----~~~~~~~wSpdG~~l~t~~s~~rl~~d~-~v~iw~~~g~~l~~~--~  210 (321)
                      +++..   .++.|.+||. +++.+..+..    ..+..++++++|+++++...      ++ .|.+|+.+|+.+...  +
T Consensus       178 ~v~~~---~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~~~g~~~~~~~~~  247 (286)
T 1q7f_A          178 FISDN---RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFTQDGQLISALESK  247 (286)
T ss_dssp             EEEEG---GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEECTTSCEEEEEEES
T ss_pred             EEEEC---CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEECCCCCEEEEEccc
Confidence            76665   5689999998 4555555543    25778999999987777663      65 899999998876333  2


Q ss_pred             c--CceEEEEEecCCCCCCC
Q 020756          211 F--DKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       211 ~--~~~~~~~w~P~~~~~~~  228 (321)
                      .  ..+..+++.|++..+++
T Consensus       248 ~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          248 VKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             SCCSCEEEEEEETTTEEEEE
T ss_pred             CCCCcceeEEECCCCcEEEE
Confidence            2  24778999998754444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.15  E-value=1.4e-08  Score=91.86  Aligned_cols=204  Identities=8%  Similarity=0.075  Sum_probs=125.0

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-e-cCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-P-LRKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-~-l~~~   82 (321)
                      +.|.+|+...   ++..............+.|+++|+.++.. ..+    +.   ....|+.++..+.....+ . ....
T Consensus        66 ~~i~~~d~~~---~~~~~~~~~~~~~~~~i~~~~dg~l~v~~-~~~----~~---~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           66 GNIFKINPET---KEIKRPFVSHKANPAAIKIHKDGRLFVCY-LGD----FK---STGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             CEEEEECTTT---CCEEEEEECSSSSEEEEEECTTSCEEEEE-CTT----SS---SCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CEEEEEeCCC---CcEEEEeeCCCCCcceEEECCCCcEEEEe-CCC----CC---CCceEEEEeCCCCEEEEEEccCccC
Confidence            4566676655   33222111223456788999999754432 100    00   113578888766543322 1 1234


Q ss_pred             CCeEEEEECcCCCEEEEEEcc----CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGF----MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~----~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ..++++.++|+|+.++.....    ..+.|..+|.++..+..+  +....+.+.|+|+|+.|+++..  .++.|++||++
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~  212 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALE  212 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEEC
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEec
Confidence            578999999999866653210    124677777765444333  3345788999999997766542  35799999986


Q ss_pred             C-CeEEE--------eeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccC--------ceEEEE
Q 020756          157 D-GKQLG--------TTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--------KLFQAE  218 (321)
Q Consensus       157 ~-~~~i~--------~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~--------~~~~~~  218 (321)
                      + +..+.        .+.. ..+..++++++|+++++...      ++.|.+|+.+|+.+......        .+..+.
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~------~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~  286 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQ  286 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEE
T ss_pred             CCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC------CCEEEEECCCCCEEEEEEcCCCccccccCcceEE
Confidence            3 32221        1112 24566999999997776662      68899999988876443222        478899


Q ss_pred             EecCCCCCC
Q 020756          219 WKPVSPDKF  227 (321)
Q Consensus       219 w~P~~~~~~  227 (321)
                      |.|+...++
T Consensus       287 ~~~dg~~L~  295 (333)
T 2dg1_A          287 FIPGTNQLI  295 (333)
T ss_dssp             ECTTSCEEE
T ss_pred             ECCCCCEEE
Confidence            998866665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.12  E-value=1.4e-08  Score=90.02  Aligned_cols=170  Identities=12%  Similarity=0.132  Sum_probs=110.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecc-cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-CC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RK   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f-~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~~   81 (321)
                      .+.|.+|+ +.   ++.+...... ......+.++++|+ +++.. .          +...|+.++.++.....+.. .+
T Consensus        99 ~~~i~~~d-~~---g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-~----------~~~~i~~~~~~g~~~~~~~~~~~  162 (286)
T 1q7f_A           99 THQIQIYN-QY---GQFVRKFGATILQHPRGVTVDNKGR-IIVVE-C----------KVMRVIIFDQNGNVLHKFGCSKH  162 (286)
T ss_dssp             GCEEEEEC-TT---SCEEEEECTTTCSCEEEEEECTTSC-EEEEE-T----------TTTEEEEECTTSCEEEEEECTTT
T ss_pred             CCEEEEEC-CC---CcEEEEecCccCCCceEEEEeCCCC-EEEEE-C----------CCCEEEEEcCCCCEEEEeCCCCc
Confidence            34566666 33   3433322111 12345677888876 33321 0          12346777766653333322 23


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC-C---cCeeeEEEcCCCCeEEEEccCCCCC-cEEEEECC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-S---GPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYV  156 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~-~---~~~~~~~~sPdG~~l~~~g~~n~~g-~i~iwD~~  156 (321)
                      ...+.+++++|+|+.+++  ...++.|.+||..+..+..+. .   .....++++|+|+++++..   .++ .|.+||. 
T Consensus       163 ~~~p~~i~~~~~g~l~v~--~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~---~~~~~i~~~~~-  236 (286)
T 1q7f_A          163 LEFPNGVVVNDKQEIFIS--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN---HNNFNLTIFTQ-  236 (286)
T ss_dssp             CSSEEEEEECSSSEEEEE--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC---SSSCEEEEECT-
T ss_pred             cCCcEEEEECCCCCEEEE--ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeC---CCCEEEEEECC-
Confidence            346889999999984443  345679999999888777773 2   4577899999998777765   454 9999997 


Q ss_pred             CCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          157 DGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       157 ~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +++.+..+..+    .+..++|+|||+++++ ..      ++.|+||++.
T Consensus       237 ~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~------~~~v~v~~~~  279 (286)
T 1q7f_A          237 DGQLISALESKVKHAQCFDVALMDDGSVVLA-SK------DYRLYIYRYV  279 (286)
T ss_dssp             TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET------TTEEEEEECS
T ss_pred             CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CC------CCeEEEEEcc
Confidence            45555555432    3668999999987766 42      8999999974

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.08  E-value=3.3e-09  Score=107.46  Aligned_cols=182  Identities=12%  Similarity=0.044  Sum_probs=110.9

Q ss_pred             eCCCCCeeEEEEEecccCCCceeecceeEEEEEcC---CCceeee-e---cCC--CCCeEEEEECcCCCEEEEEEccCC-
Q 020756           36 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD---GTHEGLV-P---LRK--EGPVHDVQWSYSGSEFAVVYGFMP-  105 (321)
Q Consensus        36 Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~---g~~~~~v-~---l~~--~~~v~~~~wsP~g~~l~~~~g~~~-  105 (321)
                      .+|+|+++++....    .++.   ...||.++..   +.....+ .   +..  ...+..++|||||++|++...... 
T Consensus       114 p~pdG~~~~~~~~~----~~~~---~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~  186 (741)
T 1yr2_A          114 PQRRGASVFYSWNS----GLMN---QSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS  186 (741)
T ss_dssp             CEEETTEEEEEEEC----SSCS---SCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC
T ss_pred             CEEECCEEEEEEEc----CCCe---EEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC
Confidence            35999999887432    1211   1347888765   4433332 1   222  236889999999999998753211 


Q ss_pred             --CeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCC-----------CCcEEEEECCCCe----EEEeeeC
Q 020756          106 --ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL-----------PGDMAFWDYVDGK----QLGTTRA  166 (321)
Q Consensus       106 --~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~-----------~g~i~iwD~~~~~----~i~~~~~  166 (321)
                        ..|.+||+.+......  +...+..+.|||| +.|+++.....           ...|++|++.++.    ++.....
T Consensus       187 e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~  265 (741)
T 1yr2_A          187 DWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE  265 (741)
T ss_dssp             SEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             ceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence              3799999976644433  2223367999999 99998873221           3359999997664    3333322


Q ss_pred             C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--e-e--EEeccCceEEEEEecCCCCCC
Q 020756          167 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--L-F--FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       167 ~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~-l--~~~~~~~~~~~~w~P~~~~~~  227 (321)
                      +  .+..+.|||||++|+..+.... ...+.+++||+.+.  . +  ...+....... |.|++..++
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~  331 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGT-DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLW  331 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTT-CSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccC-CCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEE
Confidence            2  4678999999999998874210 01457999998543  2 2  22233333333 336665544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.06  E-value=1.5e-08  Score=101.75  Aligned_cols=161  Identities=9%  Similarity=0.031  Sum_probs=99.9

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccC----
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFM----  104 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l~~~~~v~~~~wsP~g~~l~~~~g~~----  104 (321)
                      ....+.|||||++|++..+.    +|.   ....|+++++.++... ...+. .....+++|+|||+.|++.....    
T Consensus       122 ~~~~~~~SPDG~~la~~~~~----~G~---~~~~i~v~dl~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKP----NAA---DEAVLHVIDVDSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEE----TTC---SCCEEEEEETTTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             EEEEEEECCCCCEEEEEECC----CCC---ceEEEEEEECCCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCC
Confidence            35678999999999997543    221   1235889998776332 11111 11126899999999998874321    


Q ss_pred             -------CCeEEEEeCCCce---eEEe----CCcCeeeEEEcCCCCeEEEEccCC-CCCcEEEEECCCCeEEEeeeCC-C
Q 020756          105 -------PASATIFNKKCRP---ILEL----GSGPYNTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGKQLGTTRAE-C  168 (321)
Q Consensus       105 -------~~~i~i~d~~~~~---~~~~----~~~~~~~~~~sPdG~~l~~~g~~n-~~g~i~iwD~~~~~~i~~~~~~-~  168 (321)
                             +..|.+|++.+..   ...+    +...+..+.|||||++|++.+... ....|++||..+++........ .
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  273 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA  273 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence                   2359999996432   2222    234678899999999999876221 1237888877655433333232 4


Q ss_pred             eeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .....| ++|. |+..+...  ..+..|.+|++.
T Consensus       274 ~~~~~~-~~g~-l~~~s~~~--~~~~~l~~~d~~  303 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTDEG--APRQRVFEVDPA  303 (695)
T ss_dssp             CEEEEE-ETTE-EEEEECTT--CTTCEEEEEBTT
T ss_pred             eEEEEe-cCCc-EEEEECCC--CCCCEEEEEeCC
Confidence            455556 7888 66665421  124678888884

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.06  E-value=5e-08  Score=87.13  Aligned_cols=179  Identities=10%  Similarity=0.104  Sum_probs=130.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeeccc-CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~-~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      ..+.|.+|+..+   ++.+.+..... .....+.++|+|+.++ .             +...++.++..|...-.+....
T Consensus        13 ~~~~v~~~d~~t---G~~~w~~~~~~~~~~~~~~~~pdG~ilv-s-------------~~~~V~~~d~~G~~~W~~~~~~   75 (276)
T 3no2_A           13 GWNKIAIINKDT---KEIVWEYPLEKGWECNSVAATKAGEILF-S-------------YSKGAKMITRDGRELWNIAAPA   75 (276)
T ss_dssp             TCSEEEEEETTT---TEEEEEEECCTTCCCCEEEECTTSCEEE-E-------------CBSEEEEECTTSCEEEEEECCT
T ss_pred             CCCEEEEEECCC---CeEEEEeCCCccCCCcCeEECCCCCEEE-e-------------CCCCEEEECCCCCEEEEEcCCC
Confidence            467899999878   78887777654 3567788999998665 2             1123667776554333344333


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC--C------cCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--S------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~--~------~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ...++++.+.|+|+.+++..+. .+.+..+|.+++.+..+.  .      .....+.+.++|++|++..   .++.|..|
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~-~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~---~~~~v~~~  151 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGH-PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF---ATSEVREI  151 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEEST-TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET---TTTEEEEE
T ss_pred             CccccccEECCCCCEEEEecCC-CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec---CCCEEEEE
Confidence            3578899999999988875432 557888888888776652  1      1344578899999998877   67999999


Q ss_pred             ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEe
Q 020756          154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK  209 (321)
Q Consensus       154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~  209 (321)
                      |.+ ++.+-.+... ....+...++|+.++++..      ++.|..+|.. |+.+.+.
T Consensus       152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEE
T ss_pred             CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEe
Confidence            997 9888887764 5667788999999888773      5578888887 8887444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.04  E-value=3.6e-08  Score=87.88  Aligned_cols=196  Identities=11%  Similarity=0.030  Sum_probs=119.1

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CCCceeeeecC---
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLVPLR---   80 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g~~~~~v~l~---   80 (321)
                      +.|.+|+...   +  +............+.++++|+.++.. .           +...|+.++. .+.........   
T Consensus        50 ~~i~~~~~~~---~--~~~~~~~~~~~~~l~~~~dg~l~v~~-~-----------~~~~i~~~d~~~g~~~~~~~~~~~~  112 (296)
T 3e5z_A           50 NRTWAWSDDG---Q--LSPEMHPSHHQNGHCLNKQGHLIACS-H-----------GLRRLERQREPGGEWESIADSFEGK  112 (296)
T ss_dssp             TEEEEEETTS---C--EEEEESSCSSEEEEEECTTCCEEEEE-T-----------TTTEEEEECSTTCCEEEEECEETTE
T ss_pred             CEEEEEECCC---C--eEEEECCCCCcceeeECCCCcEEEEe-c-----------CCCeEEEEcCCCCcEEEEeeccCCC
Confidence            4566666554   3  33333333445678899998854332 0           2234677776 44322211110   


Q ss_pred             CCCCeEEEEECcCCCEEEEEE--ccC-------------CCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVY--GFM-------------PASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~--g~~-------------~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      ....+++++++|+|+.+++-.  |.+             .+.|..++..+...... +....+.++|+|+|+.|++..  
T Consensus       113 ~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~--  190 (296)
T 3e5z_A          113 KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDT--  190 (296)
T ss_dssp             ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEET--
T ss_pred             CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeC--
Confidence            123567899999998666521  221             24677777664332222 445678999999999994444  


Q ss_pred             CCCCcEEEEECC-CCeE---EEeee--CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEE
Q 020756          145 NLPGDMAFWDYV-DGKQ---LGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQ  216 (321)
Q Consensus       145 n~~g~i~iwD~~-~~~~---i~~~~--~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~  216 (321)
                       .++.|++||+. +++.   ...+.  ...+..++++++|+++++ +       +++|.+|+.+|+.+...  +.. +.+
T Consensus       191 -~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~-~-------~~~v~~~~~~g~~~~~~~~~~~-~~~  260 (296)
T 3e5z_A          191 -GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS-A-------GDGVHVLTPDGDELGRVLTPQT-TSN  260 (296)
T ss_dssp             -TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE-E-------TTEEEEECTTSCEEEEEECSSC-CCE
T ss_pred             -CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE-c-------CCeEEEECCCCCEEEEEECCCC-cee
Confidence             56899999986 4544   22331  124567999999985544 4       57899999999877443  333 788


Q ss_pred             EEEe-cCCCCCCCC
Q 020756          217 AEWK-PVSPDKFGD  229 (321)
Q Consensus       217 ~~w~-P~~~~~~~~  229 (321)
                      +.|. |+...++-.
T Consensus       261 ~~f~~~d~~~L~v~  274 (296)
T 3e5z_A          261 LCFGGPEGRTLYMT  274 (296)
T ss_dssp             EEEESTTSCEEEEE
T ss_pred             EEEECCCCCEEEEE
Confidence            8884 676666643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.04  E-value=3.1e-08  Score=90.22  Aligned_cols=203  Identities=12%  Similarity=0.098  Sum_probs=127.1

Q ss_pred             ceEEEEEcCCcCCCCceeeeecc-cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec----
Q 020756            5 ASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----   79 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f-~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l----   79 (321)
                      +.|.+|+..+   ++.+....-. -.....+.++++|+ |++.. .          +...|+.++.++.......+    
T Consensus        69 ~~i~~~d~~~---g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d-~----------~~~~v~~~~~~g~~~~~~~~~~~~  133 (329)
T 3fvz_A           69 DTILVIDPNN---AEILQSSGKNLFYLPHGLSIDTDGN-YWVTD-V----------ALHQVFKLDPHSKEGPLLILGRSM  133 (329)
T ss_dssp             CCEEEECTTT---CCEEEEECTTTCSSEEEEEECTTSC-EEEEE-T----------TTTEEEEECTTCSSCCSEEESBTT
T ss_pred             CcEEEEECCC---CeEEeccCCCccCCceEEEECCCCC-EEEEE-C----------CCCEEEEEeCCCCeEEEEEecccC
Confidence            4688888766   4443222100 12455788999998 44431 1          22346777776652122222    


Q ss_pred             ------CCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCceeEEeCC------------cCeeeEEEcCCCCeEEE
Q 020756           80 ------RKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILELGS------------GPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        80 ------~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~------------~~~~~~~~sPdG~~l~~  140 (321)
                            .+.....+++++| +|..+++ .+...+.|.+||..+..+..+..            .....++++|++..|++
T Consensus       134 ~~g~~~~~~~~P~~ia~~~~~g~lyv~-d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v  212 (329)
T 3fvz_A          134 QPGSDQNHFCQPTDVAVEPSTGAVFVS-DGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV  212 (329)
T ss_dssp             BCCCSTTCCSSEEEEEECTTTCCEEEE-ECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred             CCCCCccccCCCcEEEEeCCCCeEEEE-eCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence                  2233678999999 5654444 22357799999988887777731            12678999999555555


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCC-ceeecCcEEEEee-cCceeEE-----e
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAP-RLQIDNGIKIFHH-NGSLFFK-----K  209 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~-rl~~d~~v~iw~~-~g~~l~~-----~  209 (321)
                      +..  .++.|.+||.++++.+..+...    .+..++|+| |..++..+... --..++.+++|++ +|+++..     .
T Consensus       213 ~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~  289 (329)
T 3fvz_A          213 ADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK  289 (329)
T ss_dssp             EET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS
T ss_pred             EEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC
Confidence            543  4589999999889888877432    577899999 44444333100 0002558999996 5776644     3


Q ss_pred             ccCceEEEEEecCCCCCC
Q 020756          210 MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       210 ~~~~~~~~~w~P~~~~~~  227 (321)
                      +......++++|++ .+|
T Consensus       290 ~~~~p~~ia~~~dG-~ly  306 (329)
T 3fvz_A          290 HFDMPHDIVASEDG-TVY  306 (329)
T ss_dssp             CCSSEEEEEECTTS-EEE
T ss_pred             ccCCeeEEEECCCC-CEE
Confidence            45578899999988 444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.01  E-value=4.7e-08  Score=88.36  Aligned_cols=177  Identities=11%  Similarity=0.063  Sum_probs=111.9

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASA  108 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~--~~~~i  108 (321)
                      ...+.|+++|+ |+++. +          ....|+.++..+.....+.......+.+++|+|+|+.++...+.  ..+.|
T Consensus        47 ~~~~~~~~~g~-l~~~~-~----------~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           47 LEGLNFDRQGQ-LFLLD-V----------FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             EEEEEECTTSC-EEEEE-T----------TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             ccCcEECCCCC-EEEEE-C----------CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            45778999988 43321 1          12247888776654444333456789999999999866664221  11589


Q ss_pred             EEEeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccC---CCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCC
Q 020756          109 TIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGR  179 (321)
Q Consensus       109 ~i~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~---n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~  179 (321)
                      .+||..+..+..+     ....++.+.++|+|++++....+   +..+.|+.+|.++++....... ..+..++|+|||+
T Consensus       115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence            9999876654422     23467899999999877765411   0135688888766544332222 2567899999999


Q ss_pred             EEEEEEcCCceeecCcEEEEee--cCceeEE------ecc---CceEEEEEecCCC
Q 020756          180 YFMTATTAPRLQIDNGIKIFHH--NGSLFFK------KMF---DKLFQAEWKPVSP  224 (321)
Q Consensus       180 ~l~t~~s~~rl~~d~~v~iw~~--~g~~l~~------~~~---~~~~~~~w~P~~~  224 (321)
                      +|+.+.+     .++.|.+|++  .|..+..      ...   .....+.+.+++.
T Consensus       195 ~l~v~~~-----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  245 (333)
T 2dg1_A          195 VLWVTET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN  245 (333)
T ss_dssp             EEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred             EEEEEeC-----CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC
Confidence            8777664     3788999999  4443311      011   2456677777764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.97  E-value=5.1e-08  Score=98.07  Aligned_cols=208  Identities=12%  Similarity=0.116  Sum_probs=124.6

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCce---eecceeEEEEEcCCCcee--eeec
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS---YYGESKLNYLTTDGTHEG--LVPL   79 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s---~~g~~~l~~l~~~g~~~~--~v~l   79 (321)
                      ..|+|+++.+   ++.+. ..+.......+.|+ ||+.|++....+.  .+..   ......||++.+......  .+.-
T Consensus       155 ~~i~v~dl~t---g~~~~-~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~--~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~  227 (693)
T 3iuj_A          155 REIHLMDVES---KQPLE-TPLKDVKFSGISWL-GNEGFFYSSYDKP--DGSELSARTDQHKVYFHRLGTAQEDDRLVFG  227 (693)
T ss_dssp             EEEEEEETTT---CSEEE-EEEEEEESCCCEEE-TTTEEEEEESSCC--C-------CCCCEEEEEETTSCGGGCEEEES
T ss_pred             EEEEEEECCC---CCCCc-cccCCceeccEEEe-CCCEEEEEEecCc--ccccccccCCCcEEEEEECCCCcccceEEEe
Confidence            4688899887   55433 23333224578999 9999988743211  0000   012335788777554332  2221


Q ss_pred             C---CCCCeEEEEECcCCCEEEEEEc--cCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCC-CCCc
Q 020756           80 R---KEGPVHDVQWSYSGSEFAVVYG--FMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGN-LPGD  149 (321)
Q Consensus        80 ~---~~~~v~~~~wsP~g~~l~~~~g--~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n-~~g~  149 (321)
                      .   +...+.++.|||||++|++...  .....+.++|+...  ....+  +....... |+|+|..|++.+..+ ..+.
T Consensus       228 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~  306 (693)
T 3iuj_A          228 AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRR  306 (693)
T ss_dssp             CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred             cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCE
Confidence            1   1224678999999999887643  23358999998543  34444  33333333 788888777765222 2478


Q ss_pred             EEEEECCCCeE--EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecC--cEEEEeecCceeEEecc---CceEEEEEe
Q 020756          150 MAFWDYVDGKQ--LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN--GIKIFHHNGSLFFKKMF---DKLFQAEWK  220 (321)
Q Consensus       150 i~iwD~~~~~~--i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~--~v~iw~~~g~~l~~~~~---~~~~~~~w~  220 (321)
                      |..+|+.++..  ...+..+  .+.  .|+++|++|+....     .+.  .|++|+++|..+.....   ..+..+.++
T Consensus       307 l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-----~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~  379 (693)
T 3iuj_A          307 LVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-----VDATARVEQFDYEGKRVREVALPGLGSVSGFNGK  379 (693)
T ss_dssp             EEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE-----ETTEEEEEEECTTSCEEEEECCSSSSEEEECCCC
T ss_pred             EEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE-----ECCeeEEEEEECCCCeeEEeecCCCceEEeeecC
Confidence            99999987643  1222222  333  99999999998874     232  68889988876644332   245566777


Q ss_pred             cCCCCCC
Q 020756          221 PVSPDKF  227 (321)
Q Consensus       221 P~~~~~~  227 (321)
                      |+...++
T Consensus       380 ~d~~~l~  386 (693)
T 3iuj_A          380 HDDPALY  386 (693)
T ss_dssp             TTCSCEE
T ss_pred             CCCCEEE
Confidence            7666544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.95  E-value=1.4e-07  Score=95.59  Aligned_cols=207  Identities=10%  Similarity=0.016  Sum_probs=123.1

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCc--e---eecceeEEEEEcCCCce--eee
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ--S---YYGESKLNYLTTDGTHE--GLV   77 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~--s---~~g~~~l~~l~~~g~~~--~~v   77 (321)
                      ..|+||++..   ++.+. ..........+.|+|| +.|++...   +....  .   ......||++++.+...  ..+
T Consensus       189 ~~i~v~dl~t---g~~~~-~~~~~~~~~~~~wspD-~~l~~~~~---~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv  260 (741)
T 1yr2_A          189 RTVKFVGVAD---GKPLA-DELKWVKFSGLAWLGN-DALLYSRF---AEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV  260 (741)
T ss_dssp             EEEEEEETTT---CCEEE-EEEEEEESCCCEESTT-SEEEEEEC---CCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred             EEEEEEECCC---CCCCC-ccCCCceeccEEEECC-CEEEEEEe---cCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence            4688999887   55433 2322222357899999 98888642   11110  0   00023478887755432  222


Q ss_pred             ecCC--CCCeEEEEECcCCCEEEEEEccC---CCeEEEEeCCCc--e-eEEe--CCcCeeeEEEcCCCCeEEEEccCC-C
Q 020756           78 PLRK--EGPVHDVQWSYSGSEFAVVYGFM---PASATIFNKKCR--P-ILEL--GSGPYNTVRWNPKGKFLCLAGFGN-L  146 (321)
Q Consensus        78 ~l~~--~~~v~~~~wsP~g~~l~~~~g~~---~~~i~i~d~~~~--~-~~~~--~~~~~~~~~~sPdG~~l~~~g~~n-~  146 (321)
                      .-..  ...+.++.|||||++|++.....   ...+.+||+.+.  . ...+  +....... ++|+|+.|++.+..+ .
T Consensus       261 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~  339 (741)
T 1yr2_A          261 FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAP  339 (741)
T ss_dssp             ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred             eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCC
Confidence            2122  23588999999999998875432   348999998654  3 4444  33334344 459999998876322 2


Q ss_pred             CCcEEEEECCCC--eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee--cCceeEEec---cCceEEE
Q 020756          147 PGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGSLFFKKM---FDKLFQA  217 (321)
Q Consensus       147 ~g~i~iwD~~~~--~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~--~g~~l~~~~---~~~~~~~  217 (321)
                      ++.|++||+.++  .....+..+  .+..+.|+ ++.++++..      .|+..+||.+  +|..+....   ...+..+
T Consensus       340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~------~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~  412 (741)
T 1yr2_A          340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI------HDAKSQVLAFDLDGKPAGAVSLPGIGSASGL  412 (741)
T ss_dssp             TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE------ETTEEEEEEEETTSCEEEECBCSSSCEEEEE
T ss_pred             CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE------ECCEEEEEEEeCCCCceeeccCCCCeEEEEe
Confidence            567999999874  333333333  23456776 444455554      3666666654  577654433   3457788


Q ss_pred             EEecCCCCCC
Q 020756          218 EWKPVSPDKF  227 (321)
Q Consensus       218 ~w~P~~~~~~  227 (321)
                      .|+|+...++
T Consensus       413 ~~s~d~~~l~  422 (741)
T 1yr2_A          413 SGRPGDRHAY  422 (741)
T ss_dssp             ECCBTCSCEE
T ss_pred             ecCCCCCEEE
Confidence            9999877665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.95  E-value=4.1e-07  Score=82.82  Aligned_cols=175  Identities=13%  Similarity=0.063  Sum_probs=111.8

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cCC---CCCeEEEEECcCCCEEEEEEcc-
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRK---EGPVHDVQWSYSGSEFAVVYGF-  103 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~~---~~~v~~~~wsP~g~~l~~~~g~-  103 (321)
                      .....+.|+++|+.++..              ...|+.++..++....+. ...   ...++++.++|+|+.++...+. 
T Consensus        90 ~~v~~i~~~~dg~l~v~~--------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~  155 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS--------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK  155 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE--------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT
T ss_pred             CcceEEEEeCCCeEEEEE--------------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc
Confidence            456678888888765542              113777876544333222 111   2358899999999865543221 


Q ss_pred             ---CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC--CC-e-----EEEeeeC--CC
Q 020756          104 ---MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DG-K-----QLGTTRA--EC  168 (321)
Q Consensus       104 ---~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~--~~-~-----~i~~~~~--~~  168 (321)
                         ..+.|..+| .+. +..+  +....+.+.|+|||+.|+++..  ..+.|++||++  ++ +     .+..+..  ..
T Consensus       156 ~~~~~~~l~~~~-~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~  231 (326)
T 2ghs_A          156 AETGAGSIYHVA-KGK-VTKLFADISIPNSICFSPDGTTGYFVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG  231 (326)
T ss_dssp             CCTTCEEEEEEE-TTE-EEEEEEEESSEEEEEECTTSCEEEEEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE
T ss_pred             CCCCceEEEEEe-CCc-EEEeeCCCcccCCeEEcCCCCEEEEEEC--CCCEEEEEEcccccCCcccCceEEEECCCCCCC
Confidence               124666677 443 3222  2345688999999998877652  35799999986  55 2     2323321  24


Q ss_pred             eeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEe-cCCCCCC
Q 020756          169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWK-PVSPDKF  227 (321)
Q Consensus       169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~-P~~~~~~  227 (321)
                      ...+.++++|+++++...      +++|.+|+.+|+.+...  ....+..++|. |+...++
T Consensus       232 p~gi~~d~~G~lwva~~~------~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          232 MDGSVCDAEGHIWNARWG------EGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             EEEEEECTTSCEEEEEET------TTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             CCeeEECCCCCEEEEEeC------CCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEE
Confidence            566899999987766652      67899999988876443  33468899998 7766665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.94  E-value=1.6e-07  Score=83.61  Aligned_cols=173  Identities=12%  Similarity=-0.026  Sum_probs=110.3

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ..-.+.|+|+|+.|+++..           ....|+.++..+. ...+. .+...+..++++|+|+.++..  ...+.|.
T Consensus        29 ~~eg~~~d~~g~~l~~~~~-----------~~~~i~~~~~~~~-~~~~~-~~~~~~~~l~~~~dg~l~v~~--~~~~~i~   93 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDV-----------RQNRTWAWSDDGQ-LSPEM-HPSHHQNGHCLNKQGHLIACS--HGLRRLE   93 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEG-----------GGTEEEEEETTSC-EEEEE-SSCSSEEEEEECTTCCEEEEE--TTTTEEE
T ss_pred             cccCCeEeCCCCEEEEEeC-----------CCCEEEEEECCCC-eEEEE-CCCCCcceeeECCCCcEEEEe--cCCCeEE
Confidence            3457899999997766521           1224788888776 33333 355678999999999966553  4456899


Q ss_pred             EEeCCCceeEEe----C---CcCeeeEEEcCCCCeEEEEc---c-----------CCCCCcEEEEECCCCeEEEeeeCC-
Q 020756          110 IFNKKCRPILEL----G---SGPYNTVRWNPKGKFLCLAG---F-----------GNLPGDMAFWDYVDGKQLGTTRAE-  167 (321)
Q Consensus       110 i~d~~~~~~~~~----~---~~~~~~~~~sPdG~~l~~~g---~-----------~n~~g~i~iwD~~~~~~i~~~~~~-  167 (321)
                      +||.+...+..+    .   ...++.+.++|+|+++++..   .           ....+.|+.+|.. ++........ 
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV  172 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence            999844333332    1   23457899999999887631   1           0013577777776 5433333322 


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Cce-----eEEeccCceEEEEEecCCC
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL-----FFKKMFDKLFQAEWKPVSP  224 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~-----l~~~~~~~~~~~~w~P~~~  224 (321)
                      ....++|+|||++| .+.+     .++.|.+|++.  |.+     ++.........+.+.+++.
T Consensus       173 ~~~gi~~s~dg~~l-v~~~-----~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          173 KPNGLAFLPSGNLL-VSDT-----GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             SEEEEEECTTSCEE-EEET-----TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             CCccEEECCCCCEE-EEeC-----CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            56789999999999 4443     37889999984  444     1211222344567777664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.92  E-value=5.9e-07  Score=80.43  Aligned_cols=179  Identities=11%  Similarity=0.080  Sum_probs=112.7

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-ecC---CCCCeEEEEECcCCCEEEEEEcc
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLR---KEGPVHDVQWSYSGSEFAVVYGF  103 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-~l~---~~~~v~~~~wsP~g~~l~~~~g~  103 (321)
                      ......+.|+++|+. ++..             ...|+.++..+.....+ ...   ....++++.++|+|+.++...+.
T Consensus        53 ~~~~~~i~~~~dG~l-~v~~-------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           53 DAPVSSVALRQSGGY-VATI-------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             SSCEEEEEEBTTSSE-EEEE-------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEEC
T ss_pred             CCceEEEEECCCCCE-EEEE-------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCc
Confidence            345667899999993 3321             12367777654432222 221   12347899999999966543221


Q ss_pred             ---------CCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC--CCCeE-----EEeeeC
Q 020756          104 ---------MPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQ-----LGTTRA  166 (321)
Q Consensus       104 ---------~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~--~~~~~-----i~~~~~  166 (321)
                               ..+.+..+|..+...... +....+.++|+|||+.|+++..  ..+.|++||+  .++..     +..+..
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~  196 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEK  196 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred             ccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecC--CCCcEEEEeccCCCCcccCcEEEEECCC
Confidence                     112455555554433222 3345688999999998877652  3578999987  45532     222222


Q ss_pred             --CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEec--cCceEEEEEe-cCCCCCCC
Q 020756          167 --ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM--FDKLFQAEWK-PVSPDKFG  228 (321)
Q Consensus       167 --~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~--~~~~~~~~w~-P~~~~~~~  228 (321)
                        .....++++++|++.++...      .+.|.+||.. |+++....  ...+.+++|. |+...+|-
T Consensus       197 ~~~~p~g~~~d~~G~lwva~~~------~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          197 EEQIPDGMCIDAEGKLWVACYN------GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             GGCEEEEEEEBTTSCEEEEEET------TTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             CCCCCCeeEECCCCCEEEEEcC------CCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence              24567899999987666652      6779999986 88775443  3578899998 88776663

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.92  E-value=5.1e-07  Score=88.89  Aligned_cols=177  Identities=12%  Similarity=0.110  Sum_probs=122.1

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC---CCceeeeecC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD---GTHEGLVPLR   80 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~---g~~~~~v~l~   80 (321)
                      .+.|.|++..+   ++.+.+..... ....+.+||||+++++..     .       ...|+.++..   +.....+.  
T Consensus       176 ~~~V~viD~~t---~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~-----~-------dg~V~viD~~~~t~~~v~~i~--  237 (567)
T 1qks_A          176 AGQIALIDGST---YEIKTVLDTGY-AVHISRLSASGRYLFVIG-----R-------DGKVNMIDLWMKEPTTVAEIK--  237 (567)
T ss_dssp             TTEEEEEETTT---CCEEEEEECSS-CEEEEEECTTSCEEEEEE-----T-------TSEEEEEETTSSSCCEEEEEE--
T ss_pred             CCeEEEEECCC---CeEEEEEeCCC-CccceEECCCCCEEEEEc-----C-------CCeEEEEECCCCCCcEeEEEe--
Confidence            46899999988   67776666543 334789999999988742     1       1137777773   22223333  


Q ss_pred             CCCCeEEEEEC----cCCCEEEEEEccCCCeEEEEeCCC-ceeEEeC-------------CcCeeeEEEcCCCCeEEEEc
Q 020756           81 KEGPVHDVQWS----YSGSEFAVVYGFMPASATIFNKKC-RPILELG-------------SGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        81 ~~~~v~~~~ws----P~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~-------------~~~~~~~~~sPdG~~l~~~g  142 (321)
                      .......++||    |||+++++. ...++.+.++|... +.+..+.             ...+..+..|+++..+++.-
T Consensus       238 ~G~~P~~ia~s~~~~pDGk~l~v~-n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          238 IGSEARSIETSKMEGWEDKYAIAG-AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEE-EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             cCCCCceeEEccccCCCCCEEEEE-EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence            23345789999    799998886 45678999999854 4444431             11466788999887666654


Q ss_pred             cCCCCCcEEEEECCCCe--EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          143 FGNLPGDMAFWDYVDGK--QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~~--~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                        ...|.|.++|..+.+  .+..+.. .....+.|+|||+||+++..     .++.|.++|.. ++++
T Consensus       317 --~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          317 --KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             --TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEE
T ss_pred             --cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEE
Confidence              156899999987653  2333333 35667899999999998885     48999999985 4444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.89  E-value=4.3e-08  Score=91.95  Aligned_cols=127  Identities=9%  Similarity=-0.063  Sum_probs=93.7

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ... |+.++|  |+..|+++   .++.|.+||+...   .....+...++++.+.+..  ++++.   .+|.|.+||+.+
T Consensus        87 lp~-V~~l~f--d~~~L~v~---~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~  155 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS---TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRT  155 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE---ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTT
T ss_pred             CCC-eeEEEE--CCCEEEEE---cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEE---CCCCEEEEEccC
Confidence            445 999999  99999986   4579999998432   1222356678888777653  66666   789999999998


Q ss_pred             CeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeE---Ee-----------ccCceEEEEEecCC
Q 020756          158 GKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF---KK-----------MFDKLFQAEWKPVS  223 (321)
Q Consensus       158 ~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~---~~-----------~~~~~~~~~w~P~~  223 (321)
                      +.....  ...+++++|||+|  ++.+.      .|+.+++|+..+..+.   ..           +...+.++.|.++.
T Consensus       156 ~~~~~~--~~~Vs~v~WSpkG--~~vg~------~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          156 KSTKQL--AQNVTSFDVTNSQ--LAVLL------KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             CCEEEE--EESEEEEEECSSE--EEEEE------TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             Cccccc--cCCceEEEEcCCc--eEEEE------cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            876542  2489999999999  56666      4999999999877642   11           34568899999876


Q ss_pred             CCCCC
Q 020756          224 PDKFG  228 (321)
Q Consensus       224 ~~~~~  228 (321)
                      ..++.
T Consensus       226 ~flv~  230 (388)
T 1xip_A          226 DFLAV  230 (388)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            65553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.88  E-value=6.5e-07  Score=78.01  Aligned_cols=173  Identities=8%  Similarity=0.035  Sum_probs=113.9

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ....+.++++|+ |++..   .         ...|+.++..+.....+.......+.+++++|+|+.++.  ....+.|.
T Consensus        68 ~p~~i~~~~~g~-l~v~~---~---------~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~--~~~~~~i~  132 (270)
T 1rwi_B           68 QPQGLAVDGAGT-VYVTD---F---------NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA--DRGNNRVV  132 (270)
T ss_dssp             SCCCEEECTTCC-EEEEE---T---------TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEE--EGGGTEEE
T ss_pred             CcceeEECCCCC-EEEEc---C---------CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEE--ECCCCEEE
Confidence            455788888887 44431   0         124777777765433333333357899999999984444  23456899


Q ss_pred             EEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEE
Q 020756          110 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTA  184 (321)
Q Consensus       110 i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~  184 (321)
                      +|+.........   +....+.+.++|+|+++++..   .++.|.+||............  ..+..++++++|..+++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          133 KLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT---DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             EECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG---GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred             EEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC---CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEE
Confidence            998654333222   234578899999999666654   457999999987655433222  367789999999665555


Q ss_pred             EcCCceeecCcEEEEeecCceeEEe---ccCceEEEEEecCCCCCC
Q 020756          185 TTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       185 ~s~~rl~~d~~v~iw~~~g~~l~~~---~~~~~~~~~w~P~~~~~~  227 (321)
                      .      .++.|.+|+..+......   .......+.+.|++. ++
T Consensus       210 ~------~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~  248 (270)
T 1rwi_B          210 H------NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VY  248 (270)
T ss_dssp             T------TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EE
T ss_pred             C------CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EE
Confidence            4      377899999987654332   234678899999875 44

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.87  E-value=5e-07  Score=82.31  Aligned_cols=199  Identities=8%  Similarity=-0.016  Sum_probs=127.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~l~~~   82 (321)
                      .+.|.+++..+   ++.+.+.... .....+.++++| .|++...           ....|+.++...... ..+.+...
T Consensus        63 ~~~v~viD~~t---~~~~~~i~~~-~~p~~i~~~~~g-~lyv~~~-----------~~~~v~~iD~~t~~~~~~i~~g~~  126 (328)
T 3dsm_A           63 SHVIFAIDINT---FKEVGRITGF-TSPRYIHFLSDE-KAYVTQI-----------WDYRIFIINPKTYEITGYIECPDM  126 (328)
T ss_dssp             GTEEEEEETTT---CCEEEEEECC-SSEEEEEEEETT-EEEEEEB-----------SCSEEEEEETTTTEEEEEEECTTC
T ss_pred             CCEEEEEECcc---cEEEEEcCCC-CCCcEEEEeCCC-eEEEEEC-----------CCCeEEEEECCCCeEEEEEEcCCc
Confidence            36788898887   6666655432 456678888888 5555321           123477777765432 23443321


Q ss_pred             ----CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeC-CcCeeeEEEcCCCCeEEEEccCCC--------CC
Q 020756           83 ----GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG-SGPYNTVRWNPKGKFLCLAGFGNL--------PG  148 (321)
Q Consensus        83 ----~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~--------~g  148 (321)
                          .....+++  ++..+.++....++.|.++|.... .+..+. ....+.+.++|+|++++++. ++.        .+
T Consensus       127 ~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~  203 (328)
T 3dsm_A          127 DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITD-GGYEGSPYGYEAP  203 (328)
T ss_dssp             CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBC-CBCTTCSSCBCCC
T ss_pred             cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEEC-CCccCCccccCCc
Confidence                13456777  456666652113679999999654 444442 23456899999999766654 110        27


Q ss_pred             cEEEEECCCCeEEEeeeC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-e--c--cCceEEEEEe
Q 020756          149 DMAFWDYVDGKQLGTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-K--M--FDKLFQAEWK  220 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~--~--~~~~~~~~w~  220 (321)
                      .|.++|..+++.+..+..   .....++|+|||++|.++.       . .+.+||.....+.. .  .  ....+.+.+.
T Consensus       204 ~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-------~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd  275 (328)
T 3dsm_A          204 SLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-------N-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN  275 (328)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-------S-SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred             eEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-------c-EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence            899999999987766653   2578899999999988765       2 78889985433311 1  1  3467889999


Q ss_pred             cCCCCCCCC
Q 020756          221 PVSPDKFGD  229 (321)
Q Consensus       221 P~~~~~~~~  229 (321)
                      |+...+|-.
T Consensus       276 p~~g~lyva  284 (328)
T 3dsm_A          276 PNNGEVYVA  284 (328)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCeEEEE
Confidence            977777643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.85  E-value=7.6e-07  Score=80.91  Aligned_cols=181  Identities=12%  Similarity=0.126  Sum_probs=115.3

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCC-------Ccee-------ecceeEEEEEcC-CCceeeeecCCCCCeEEEEECcC
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKT-------NQSY-------YGESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYS   93 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t-------~~s~-------~g~~~l~~l~~~-g~~~~~v~l~~~~~v~~~~wsP~   93 (321)
                      .....+.++++|+.++.. ..+ ...       ...+       .....|+.++.. +.........+....++++++|+
T Consensus        24 ~~v~~va~d~~G~l~v~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFH-RGD-HVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             SCEEEEEECTTCCEEEEE-CTT-CCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             CCceEEEECCCCCEEEEe-CCC-CeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            456788999999765432 111 000       0000       011247777775 43222222123457889999999


Q ss_pred             CCEEEEEEccCCCeEEEEeCCCc--eeEEeCC-----------cCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           94 GSEFAVVYGFMPASATIFNKKCR--PILELGS-----------GPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        94 g~~l~~~~g~~~~~i~i~d~~~~--~~~~~~~-----------~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      |+.+++  +...+.|.+||..+.  .+..++.           ...+.++++| +|+++++.++  .++.|.+||. +++
T Consensus       102 g~l~v~--d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~--~~~~I~~~~~-~g~  176 (329)
T 3fvz_A          102 GNYWVT--DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY--CNSRIVQFSP-SGK  176 (329)
T ss_dssp             SCEEEE--ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS--SCCEEEEECT-TSC
T ss_pred             CCEEEE--ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC--CCCeEEEEcC-CCC
Confidence            995444  455679999999776  5666631           2467899999 7777776642  2589999995 666


Q ss_pred             EEEeeeC------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEe----ccCceEEEEEec
Q 020756          160 QLGTTRA------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK----MFDKLFQAEWKP  221 (321)
Q Consensus       160 ~i~~~~~------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~----~~~~~~~~~w~P  221 (321)
                      .+..+..            .....++++|++..|..+..     .++.|++|+.. |+++...    ....++.+.++|
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-----~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-----ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP  250 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-----TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-----CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC
Confidence            6665532            13678999999444444443     37889999997 8877544    234688899998

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.84  E-value=6.6e-07  Score=79.70  Aligned_cols=178  Identities=16%  Similarity=0.141  Sum_probs=111.3

Q ss_pred             CccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecC---CCCCeEEEEECcCCCEEEEEEcc
Q 020756           29 CSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLR---KEGPVHDVQWSYSGSEFAVVYGF  103 (321)
Q Consensus        29 ~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~---~~~~v~~~~wsP~g~~l~~~~g~  103 (321)
                      .....+.++++ |+ |++...            ...|+.++..+..... ....   ....++++.++|+|+.++...+.
T Consensus        71 ~~~~~i~~~~~~g~-l~v~~~------------~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  137 (314)
T 1pjx_A           71 GIPAGCQCDRDANQ-LFVADM------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAG  137 (314)
T ss_dssp             CCEEEEEECSSSSE-EEEEET------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBC
T ss_pred             CCCceEEEecCCCc-EEEEEC------------CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCc
Confidence            44667888888 54 333210            1147777776432211 1111   12357899999999866553221


Q ss_pred             C-------------CCeEEEEeCCCceeEEe-CCcCeeeEEEc----CCCCeEEEEccCCCCCcEEEEECC-CCe-----
Q 020756          104 M-------------PASATIFNKKCRPILEL-GSGPYNTVRWN----PKGKFLCLAGFGNLPGDMAFWDYV-DGK-----  159 (321)
Q Consensus       104 ~-------------~~~i~i~d~~~~~~~~~-~~~~~~~~~~s----PdG~~l~~~g~~n~~g~i~iwD~~-~~~-----  159 (321)
                      .             .+.+..||..+...... +....+.+.|+    |+|+.|.++..  .++.|.+||++ +++     
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~  215 (314)
T 1pjx_A          138 EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKK  215 (314)
T ss_dssp             BCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEE
T ss_pred             ccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccce
Confidence            0             14677788764332222 33456789999    99987776652  35799999986 453     


Q ss_pred             EEEeeeC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE--eccCceEEEEEecCCCCCC
Q 020756          160 QLGTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       160 ~i~~~~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~--~~~~~~~~~~w~P~~~~~~  227 (321)
                      .+..+..   .....++++++|+++++...      ++.|.+|+.. |+.+..  .+...+..+.+.|+...++
T Consensus       216 ~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          216 VWGHIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEEECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             EEEECCCCCCCCCCceEECCCCCEEEEEcC------CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence            2222322   23567999999998777763      7889999987 765532  3335788899988876555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.82  E-value=1.2e-07  Score=95.33  Aligned_cols=182  Identities=12%  Similarity=0.086  Sum_probs=109.3

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC-eEEEEECcCCCEEEEEEccC------
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP-VHDVQWSYSGSEFAVVYGFM------  104 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~-v~~~~wsP~g~~l~~~~g~~------  104 (321)
                      ..+.|||||++|++..+    ..|...   ..|+++++.++......+.  +. ...++|+ ||+.|+++....      
T Consensus       132 ~~~~~SpDg~~lAy~~~----~~G~~~---~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLS----LAGSDW---REIHLMDVESKQPLETPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             EEEEECTTSSEEEEEEE----CSSCCE---EEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             EEEEECCCCCEEEEEEe----cCCCce---EEEEEEECCCCCCCccccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence            35689999999999743    233321   3588889877643332211  11 3568999 999999875432      


Q ss_pred             -----CCeEEEEeCCCce---eEEeC--C---cCeeeEEEcCCCCeEEEEcc-CCCCCcEEEEECCCCe-EEEeeeCC-C
Q 020756          105 -----PASATIFNKKCRP---ILELG--S---GPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGK-QLGTTRAE-C  168 (321)
Q Consensus       105 -----~~~i~i~d~~~~~---~~~~~--~---~~~~~~~~sPdG~~l~~~g~-~n~~g~i~iwD~~~~~-~i~~~~~~-~  168 (321)
                           +.+|.+|++.+..   ...+.  .   .....+.|||||++|++... +.....|+++|+.++. ....+..+ .
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~  281 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD  281 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence                 2469999985432   23332  1   23578999999999987643 2234699999997662 22223222 2


Q ss_pred             eeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-e----eEEeccCceEEEEEecCCCCCC
Q 020756          169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-L----FFKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~----l~~~~~~~~~~~~w~P~~~~~~  227 (321)
                      .....|+++|..|+..+....  ....|.++++.+. .    ....+...+.  .|+|+...++
T Consensus       282 ~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv  341 (693)
T 3iuj_A          282 ADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLF  341 (693)
T ss_dssp             SCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred             ceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEE
Confidence            222238999888887775210  1245777777542 1    1222333333  7777766554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.77  E-value=1.1e-06  Score=86.56  Aligned_cols=177  Identities=10%  Similarity=0.001  Sum_probs=120.2

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  112 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d  112 (321)
                      ...|+.|...+++++..          +...+..++..... ..-.+.....++.+.+||||++++++  +.++.|.+||
T Consensus       158 ~~~~~~d~~~~~~V~~~----------~~~~V~viD~~t~~-v~~~i~~g~~p~~v~~SpDGr~lyv~--~~dg~V~viD  224 (567)
T 1qks_A          158 QQMNDWDLENLFSVTLR----------DAGQIALIDGSTYE-IKTVLDTGYAVHISRLSASGRYLFVI--GRDGKVNMID  224 (567)
T ss_dssp             SCCSCCCGGGEEEEEET----------TTTEEEEEETTTCC-EEEEEECSSCEEEEEECTTSCEEEEE--ETTSEEEEEE
T ss_pred             ccccccCCCceEEEEeC----------CCCeEEEEECCCCe-EEEEEeCCCCccceEECCCCCEEEEE--cCCCeEEEEE
Confidence            34567665555554322          23347788876542 22223334567899999999998886  4578999999


Q ss_pred             C---CCceeEEeC-CcCeeeEEEc----CCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-------------Ceee
Q 020756          113 K---KCRPILELG-SGPYNTVRWN----PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------------CSVT  171 (321)
Q Consensus       113 ~---~~~~~~~~~-~~~~~~~~~s----PdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-------------~~~~  171 (321)
                      +   ..+.+.++. ......+.||    |||++++++..  ..++|.++|..+++.+..+...             .+..
T Consensus       225 ~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~--~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          225 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY--WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE--ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             CCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEc--cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence            9   445556662 2234578999    79999999873  4589999999999887765421             3556


Q ss_pred             EEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee--EE-eccCceEEEEEecCCCCCCCC
Q 020756          172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FK-KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~~-~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +..|+++..++....     .++.+.++|+... .+  .. ..-..+.++.|+|+..+++..
T Consensus       303 i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va  359 (567)
T 1qks_A          303 ILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA  359 (567)
T ss_dssp             EEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             EEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence            888999877776664     4788999998542 11  11 223467789999998887754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.75  E-value=4.8e-06  Score=77.50  Aligned_cols=74  Identities=9%  Similarity=0.003  Sum_probs=51.6

Q ss_pred             EEEcCCCCeEEEEccC-------CCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCC-EEEEEEcCCceeecCcEEEE
Q 020756          129 VRWNPKGKFLCLAGFG-------NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       129 ~~~sPdG~~l~~~g~~-------n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw  199 (321)
                      +.++|||+.|.++...       ...+.|.++|+.+++.+..+... ....+.|||||+ +++++..     .++.|.++
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~-----~~~~V~Vi  346 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA-----GTEVLHIY  346 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC-----CCCeEEEE
Confidence            4566666666554310       01357999999999988888654 588899999999 4555442     37899999


Q ss_pred             eec-CceeE
Q 020756          200 HHN-GSLFF  207 (321)
Q Consensus       200 ~~~-g~~l~  207 (321)
                      |.. ++.+.
T Consensus       347 D~~t~~vv~  355 (373)
T 2mad_H          347 DAGAGDQDQ  355 (373)
T ss_pred             ECCCCCEEe
Confidence            985 44443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.74  E-value=2.9e-06  Score=79.99  Aligned_cols=176  Identities=9%  Similarity=0.023  Sum_probs=106.2

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-ee-e--cC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LV-P--LR   80 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v-~--l~   80 (321)
                      +.|++|+...   +........+. ... +.|+++|+.|++..   .  .     +...|+.++..+.... .+ .  ..
T Consensus       152 ~~I~~id~~~---g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d---~--~-----~~~~I~~~d~~~~~~~~~~g~~~~~  216 (409)
T 3hrp_A          152 PRVRLISVDD---NKVTTVHPGFK-GGK-PAVTKDKQRVYSIG---W--E-----GTHTVYVYMKASGWAPTRIGQLGST  216 (409)
T ss_dssp             TEEEEEETTT---TEEEEEEETCC-BCB-CEECTTSSEEEEEB---S--S-----TTCEEEEEEGGGTTCEEEEEECCTT
T ss_pred             CcEEEEECCC---CEEEEeeccCC-CCc-eeEecCCCcEEEEe---c--C-----CCceEEEEEcCCCceeEEeeeccch
Confidence            5677777765   33322222222 233 89999999877641   1  1     1125777777654321 11 0  11


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe------CCc---CeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSG---PYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~------~~~---~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      ....+++++++|++..|.++  ...+.|..||..+.....+      +..   +.+.++|+|++..|.++..  ..+.|+
T Consensus       217 ~~~~p~~iav~p~~g~lyv~--d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~--~~~~I~  292 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFV--DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ--NLSSVY  292 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEE--CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET--TTTEEE
T ss_pred             hcCCcEEEEEeCCCCeEEEE--ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC--CCCEEE
Confidence            34567899999965666664  3467899999875544333      111   2238999997666666553  457899


Q ss_pred             EEECCCCeEEEeeeC----------------CCeeeEEEccCCCEEEEEE-cCCceeecCcEEEEee-cCcee
Q 020756          152 FWDYVDGKQLGTTRA----------------ECSVTSEWSPDGRYFMTAT-TAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       152 iwD~~~~~~i~~~~~----------------~~~~~~~wSpdG~~l~t~~-s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      .||.+.. .......                .....++++|+|+++++-+ .      ++.|+.|++ +|...
T Consensus       293 ~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~------~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          293 KITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK------GYCLRKLDILDGYVS  358 (409)
T ss_dssp             EECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT------TCEEEEEETTTTEEE
T ss_pred             EEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC------CCEEEEEECCCCEEE
Confidence            9998644 2211111                1366799999999555543 3      778999994 56543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.73  E-value=1.2e-06  Score=76.22  Aligned_cols=153  Identities=7%  Similarity=0.019  Sum_probs=96.5

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ....+.++++|+ |++.. .          +...|+.++................+.+++++|+|+.++.  ....+.|.
T Consensus       109 ~p~~i~~~~~g~-l~v~~-~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~--~~~~~~i~  174 (270)
T 1rwi_B          109 YPEGLAVDTQGA-VYVAD-R----------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVT--DTDNNRVV  174 (270)
T ss_dssp             SEEEEEECTTCC-EEEEE-G----------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEE--EGGGTEEE
T ss_pred             CCcceEECCCCC-EEEEE-C----------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEE--ECCCCEEE
Confidence            345677777776 33321 0          2234666644332111111122346788999999984444  23456899


Q ss_pred             EEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee-C-CCeeeEEEccCCCEEEEE
Q 020756          110 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A-ECSVTSEWSPDGRYFMTA  184 (321)
Q Consensus       110 i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~-~-~~~~~~~wSpdG~~l~t~  184 (321)
                      +||..+......   +......+.++|+|++++...   .++.|.+||........... . ..+..+++++||+.+++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~---~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  251 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH---NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD  251 (270)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET---TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEE
T ss_pred             EEecCCCceEeecccCCCCceEEEECCCCCEEEEEC---CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEE
Confidence            999977655443   235678899999996666654   46789999987654333222 2 257889999999866665


Q ss_pred             EcCCceeecCcEEEEeecCce
Q 020756          185 TTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       185 ~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      .      .++.|+++++....
T Consensus       252 ~------~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          252 R------GNDRVVKLTSLEHH  266 (270)
T ss_dssp             G------GGTEEEEECCCGGG
T ss_pred             C------CCCEEEEEcCCCcc
Confidence            5      48899999876443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.71  E-value=3.1e-07  Score=86.11  Aligned_cols=157  Identities=7%  Similarity=-0.004  Sum_probs=102.9

Q ss_pred             CCceEEEEEcCCcC--------CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce
Q 020756            3 SPASVQIYACGKDL--------QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE   74 (321)
Q Consensus         3 ~p~~v~v~~~~~~~--------~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~   74 (321)
                      .|..+.||++....        .-++.....+.+  ...+.|  +|..|++.  .+         |.  |+.+++.....
T Consensus        56 ~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f--d~~~L~v~--~~---------~~--l~v~dv~sl~~  118 (388)
T 1xip_A           56 SGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF--HGDQVLVS--TR---------NA--LYSLDLEELSE  118 (388)
T ss_dssp             ETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE--ETTEEEEE--ES---------SE--EEEEESSSTTC
T ss_pred             CCCEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE--CCCEEEEE--cC---------Cc--EEEEEchhhhc
Confidence            35567778765421        012223333333  788999  88888875  11         22  45555433222


Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      ......++.++.++.|.+..  |+++  ..++.+.+||++......+ ...+.+++|||+|  ++++.   .+|.|.+|+
T Consensus       119 ~~~~~~~~~~v~~i~~~~p~--~av~--~~dG~L~v~dl~~~~~~~~-~~~Vs~v~WSpkG--~~vg~---~dg~i~~~~  188 (388)
T 1xip_A          119 FRTVTSFEKPVFQLKNVNNT--LVIL--NSVNDLSALDLRTKSTKQL-AQNVTSFDVTNSQ--LAVLL---KDRSFQSFA  188 (388)
T ss_dssp             EEEEEECSSCEEEEEECSSE--EEEE--ETTSEEEEEETTTCCEEEE-EESEEEEEECSSE--EEEEE---TTSCEEEEE
T ss_pred             cCccceeecceeeEEecCCC--EEEE--ECCCCEEEEEccCCccccc-cCCceEEEEcCCc--eEEEE---cCCcEEEEc
Confidence            22222356678898887653  7765  5689999999975544333 4689999999999  55665   679999999


Q ss_pred             CCCCeE--EEee------e-----CCCeeeEEEccCCCEEEEEEc
Q 020756          155 YVDGKQ--LGTT------R-----AECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       155 ~~~~~~--i~~~------~-----~~~~~~~~wSpdG~~l~t~~s  186 (321)
                      ...+++  ..++      .     ...+..+.|.++++++++-..
T Consensus       189 ~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          189 WRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             CCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            987775  5555      2     236888999999999987553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.70  E-value=8.6e-07  Score=79.58  Aligned_cols=181  Identities=12%  Similarity=0.115  Sum_probs=108.8

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC---CCCCeEEEEECcCCCEEEEEE--c
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVY--G  102 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~---~~~~v~~~~wsP~g~~l~~~~--g  102 (321)
                      ......+.|+++|+.+ ++..           +...|+.++.++.........   ....++++.++|+|+.+++-.  |
T Consensus        85 ~~~~~gl~~d~dG~l~-v~~~-----------~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g  152 (305)
T 3dr2_A           85 TAFTNGNAVDAQQRLV-HCEH-----------GRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFG  152 (305)
T ss_dssp             CSCEEEEEECTTSCEE-EEET-----------TTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGG
T ss_pred             CCccceeeECCCCCEE-EEEC-----------CCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCC
Confidence            3456678889988743 3311           223466666665422221110   123467899999998666410  2


Q ss_pred             cC-------------CCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCC---CCCcEEEEECCCCeE-----
Q 020756          103 FM-------------PASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYVDGKQ-----  160 (321)
Q Consensus       103 ~~-------------~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n---~~g~i~iwD~~~~~~-----  160 (321)
                      .+             .+.|..||.+...+..+ +....+.++|+|||+.|+++....   ..+.|++||+.....     
T Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~  232 (305)
T 3dr2_A          153 LRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH  232 (305)
T ss_dssp             GSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE
T ss_pred             ccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE
Confidence            21             24677788743322222 334567899999999888876321   026899999875531     


Q ss_pred             EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc-CceEEEEEecCCCCCCC
Q 020756          161 LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-DKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       161 i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~-~~~~~~~w~P~~~~~~~  228 (321)
                      +..........+.++++|++ .+++       .++|.+|+.+|+.+..... ..+.++.|.|+...++-
T Consensus       233 ~~~~~~~~pdgi~~d~~G~l-wv~~-------~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~i  293 (305)
T 3dr2_A          233 FASVPDGLPDGFCVDRGGWL-WSSS-------GTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFI  293 (305)
T ss_dssp             EECCSSSCCCSEEECTTSCE-EECC-------SSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEE
T ss_pred             EEECCCCCCCeEEECCCCCE-EEec-------CCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEE
Confidence            11111123456899999994 4444       3469999999988744433 35788899877665653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.70  E-value=3.2e-06  Score=78.11  Aligned_cols=87  Identities=15%  Similarity=0.197  Sum_probs=67.5

Q ss_pred             EEECcCCCEEEEEEc-c--------CCCeEEEEeCCC-ceeEEeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           88 VQWSYSGSEFAVVYG-F--------MPASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        88 ~~wsP~g~~l~~~~g-~--------~~~~i~i~d~~~-~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ++++|+|+++.++.. .        ....+.+||+.. +.+.++. .. ...+.|+|||++|++++   . +.|.+||..
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n---~-~~v~v~D~~  333 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD---G-GNVNVYDIS  333 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC---S-SCEEEEECS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC---C-CeEEEEECC
Confidence            688999888877532 1        134899999965 4555552 23 88999999999988876   4 899999999


Q ss_pred             CC--eEEEeeeC--CCeeeEEEccCCC
Q 020756          157 DG--KQLGTTRA--ECSVTSEWSPDGR  179 (321)
Q Consensus       157 ~~--~~i~~~~~--~~~~~~~wSpdG~  179 (321)
                      ++  +.+..+..  .....+.++|||+
T Consensus       334 t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          334 QPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99  99988633  3678899999997

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.70  E-value=2.4e-06  Score=77.78  Aligned_cols=184  Identities=9%  Similarity=-0.043  Sum_probs=113.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeeccc-----CccceEEeCCCCCeeEEEEEecccCCCceeec-ceeEEEEEcCCCc-eee
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG-ESKLNYLTTDGTH-EGL   76 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~-----~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g-~~~l~~l~~~g~~-~~~   76 (321)
                      .+.|.+|+..+   ++.+.......     .....+.+  ++..|++..           ++ ...|+.++..... ...
T Consensus       104 ~~~v~~iD~~t---~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~-----------~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A          104 DYRIFIINPKT---YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC-----------WSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             CSEEEEEETTT---TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE-----------CTTCCEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCC---CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc-----------CCCCCEEEEEECCCCeEEEE
Confidence            46778888776   45444444322     03345566  566665541           11 3357778775442 233


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccC--------CCeEEEEeCCCcee-EEe--C-CcCeeeEEEcCCCCeEEEEccC
Q 020756           77 VPLRKEGPVHDVQWSYSGSEFAVVYGFM--------PASATIFNKKCRPI-LEL--G-SGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~--------~~~i~i~d~~~~~~-~~~--~-~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      +.+  ....+++.++|+|+.+++..+..        .+.+.++|.....+ ..+  . ....+.++|+|+|++|.++.  
T Consensus       168 i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--  243 (328)
T 3dsm_A          168 LTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--  243 (328)
T ss_dssp             EEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES--
T ss_pred             EEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc--
Confidence            332  34457899999998666643321        26899999865433 344  2 23678999999999999876  


Q ss_pred             CCCCcEEEEECCCCeEEEe--ee--CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc
Q 020756          145 NLPGDMAFWDYVDGKQLGT--TR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF  211 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i~~--~~--~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~  211 (321)
                       .  .|++||..+++....  +.  ......++++|++..|..+.. .-...++.|.+||.+|+++.....
T Consensus       244 -~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~-~~y~~~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          244 -N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADA-IDYQQQGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             -S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEEC-TTSSSEEEEEEECTTCCEEEEEEE
T ss_pred             -c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcc-cccccCCEEEEECCCCCEEEEEEe
Confidence             3  899999988765321  22  235677999995444444430 000037889999999888755433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.66  E-value=3.9e-06  Score=74.99  Aligned_cols=148  Identities=12%  Similarity=0.099  Sum_probs=94.8

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  111 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~  111 (321)
                      ..+.++++|+.++........ ..........||.++.++.....  .......+.++|+|||+.|+++. ...+.|.+|
T Consensus       101 ~di~~d~dG~l~~~~~~~~~~-~~~~~~~~~~l~~~d~~g~~~~~--~~~~~~pngi~~spdg~~lyv~~-~~~~~i~~~  176 (297)
T 3g4e_A          101 NDGKVDPAGRYFAGTMAEETA-PAVLERHQGALYSLFPDHHVKKY--FDQVDISNGLDWSLDHKIFYYID-SLSYSVDAF  176 (297)
T ss_dssp             EEEEECTTSCEEEEEEECCSB-TTBCCTTCEEEEEECTTSCEEEE--EEEESBEEEEEECTTSCEEEEEE-GGGTEEEEE
T ss_pred             CCEEECCCCCEEEecCCcccc-cccccCCCcEEEEEECCCCEEEE--eeccccccceEEcCCCCEEEEec-CCCCcEEEE
Confidence            457788888843322111000 00000122358888776543222  12334567899999999887763 445789999


Q ss_pred             eCC--Cce------eEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEc-cCC
Q 020756          112 NKK--CRP------ILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS-PDG  178 (321)
Q Consensus       112 d~~--~~~------~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wS-pdG  178 (321)
                      |+.  ...      +..+.  ......+.+.++|++.+...   ..+.|.+||.++++.+..+..+  .+++++|+ ||+
T Consensus       177 ~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~---~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          177 DYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY---NGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             EECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE---TTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGG
T ss_pred             eccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc---CCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCC
Confidence            863  211      22332  24567799999998766654   4578999999989888877765  68899998 999


Q ss_pred             CEEEEEEc
Q 020756          179 RYFMTATT  186 (321)
Q Consensus       179 ~~l~t~~s  186 (321)
                      +.|..++.
T Consensus       254 ~~L~vt~~  261 (297)
T 3g4e_A          254 SEMYVTCA  261 (297)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEcC
Confidence            88877764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.66  E-value=3e-06  Score=80.39  Aligned_cols=192  Identities=5%  Similarity=-0.076  Sum_probs=118.9

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecC--C
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR--K   81 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~--~   81 (321)
                      +.|.+++..+   .+.+.+.......  .+.+||||++|++...- ..... .-.+...|..++..... ...+.+.  .
T Consensus        99 ~~VsVID~~t---~~vv~~I~vG~~P--gia~SpDgk~lyVan~~-~~~~~-~G~~~~~VsviD~~t~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGST---GRILGMTDGGFLP--HPVAAEDGSFFAQASTV-FERIA-RGKRTDYVEVFDPVTFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTT---TEEEEEEEECSSC--EEEECTTSSCEEEEEEE-EEETT-EEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CeEEEEECCC---CEEEEEEECCCCC--ceEECCCCCEEEEEecc-ccccc-cCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence            7899999988   7888888776654  89999999999886310 00000 00023357777764432 2334443  1


Q ss_pred             ----CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeCC---------c-----------------------
Q 020756           82 ----EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELGS---------G-----------------------  124 (321)
Q Consensus        82 ----~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~~---------~-----------------------  124 (321)
                          ...-+.+.++|||+++++......+.|.++|+... .+.++.-         +                       
T Consensus       172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v  251 (426)
T 3c75_H          172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGET  251 (426)
T ss_dssp             CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence                12356789999999988863222467888887432 1111100         0                       


Q ss_pred             --------------------------------------------------------------------CeeeEEEcCCCC
Q 020756          125 --------------------------------------------------------------------PYNTVRWNPKGK  136 (321)
Q Consensus       125 --------------------------------------------------------------------~~~~~~~sPdG~  136 (321)
                                                                                          ....+.++|+|+
T Consensus       252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~  331 (426)
T 3c75_H          252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD  331 (426)
T ss_dssp             EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred             EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence                                                                                000145666666


Q ss_pred             eEEEEcc-C------CCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          137 FLCLAGF-G------NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       137 ~l~~~g~-~------n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                      .|.++.. +      ...++|.++|+.+++.+..+.-. ....+.|+|||+ +++++..     .++.|.++|.. ++.+
T Consensus       332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~-----~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSA-----GTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET-----TTTEEEEEETTTCCEE
T ss_pred             EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcC-----CCCeEEEEECCCCCEE
Confidence            5555421 0      01246888898888888877654 577899999999 7766663     38999999984 5555


Q ss_pred             EE
Q 020756          207 FK  208 (321)
Q Consensus       207 ~~  208 (321)
                      ..
T Consensus       407 ~t  408 (426)
T 3c75_H          407 RS  408 (426)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.64  E-value=4.4e-06  Score=74.91  Aligned_cols=158  Identities=10%  Similarity=-0.015  Sum_probs=100.0

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  110 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i  110 (321)
                      .-.+.|+++|+.|+++.     .      ....|+.++..+. ...+. .....++.+.|+++|+.++..  ...+.|.+
T Consensus        47 ~egp~~~~~g~~l~~~d-----~------~~~~i~~~~~~g~-~~~~~-~~~~~~~gl~~d~dG~l~v~~--~~~~~v~~  111 (305)
T 3dr2_A           47 SEGPAWWEAQRTLVWSD-----L------VGRRVLGWREDGT-VDVLL-DATAFTNGNAVDAQQRLVHCE--HGRRAITR  111 (305)
T ss_dssp             EEEEEEEGGGTEEEEEE-----T------TTTEEEEEETTSC-EEEEE-ESCSCEEEEEECTTSCEEEEE--TTTTEEEE
T ss_pred             ccCCeEeCCCCEEEEEE-----C------CCCEEEEEeCCCC-EEEEe-CCCCccceeeECCCCCEEEEE--CCCCEEEE
Confidence            34689999999887752     1      1123677777554 22222 345678999999999855542  33468999


Q ss_pred             EeCCCceeEEe----C---CcCeeeEEEcCCCCeEEEE---ccC-----------CCCCcEEEEECCCCeEEEeeeCCCe
Q 020756          111 FNKKCRPILEL----G---SGPYNTVRWNPKGKFLCLA---GFG-----------NLPGDMAFWDYVDGKQLGTTRAECS  169 (321)
Q Consensus       111 ~d~~~~~~~~~----~---~~~~~~~~~sPdG~~l~~~---g~~-----------n~~g~i~iwD~~~~~~i~~~~~~~~  169 (321)
                      ||..+. +..+    .   ....+.+.++|+|++.++-   |..           ...+.|+.||..+++..........
T Consensus       112 ~~~~g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p  190 (305)
T 3dr2_A          112 SDADGQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHP  190 (305)
T ss_dssp             ECTTSC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSE
T ss_pred             ECCCCC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCC
Confidence            998754 3322    1   2346789999999977752   110           0135788899876643332222356


Q ss_pred             eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      ..++|+|||++|+.+.+.......+.|.+|++.+.
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            77999999998888775210001267899998653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.61  E-value=3e-06  Score=77.01  Aligned_cols=146  Identities=12%  Similarity=-0.024  Sum_probs=96.9

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  112 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d  112 (321)
                      .+.|++++..++++..           ....|+.++..+.....+.  ....+.++.|+|+|+.++..    ...|.+||
T Consensus        53 gp~~~~~~~~l~~~d~-----------~~~~i~~~d~~~~~~~~~~--~~~~v~~i~~~~dg~l~v~~----~~gl~~~d  115 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNI-----------LERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIAS----DDGLFLRD  115 (326)
T ss_dssp             EEEEETTTTEEEEEEG-----------GGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEE----TTEEEEEE
T ss_pred             CCeEeCCCCEEEEEEC-----------CCCEEEEEECCCCcEEEEE--CCCcceEEEEeCCCeEEEEE----CCCEEEEE
Confidence            6789999888777521           1224788887766444443  34679999999999876653    23599999


Q ss_pred             CCCceeEEe-C------CcCeeeEEEcCCCCeEEEEccCC---CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEE
Q 020756          113 KKCRPILEL-G------SGPYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYF  181 (321)
Q Consensus       113 ~~~~~~~~~-~------~~~~~~~~~sPdG~~l~~~g~~n---~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l  181 (321)
                      ..+..+..+ .      ...++.+.++|+|++++......   ..+.|+.+|  +++....... .....++|+|||++|
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTG  193 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEE
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEE
Confidence            865544433 1      13578899999999766542100   135677777  4544332222 255679999999988


Q ss_pred             EEEEcCCceeecCcEEEEeec
Q 020756          182 MTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +.+.+     .++.|.+|++.
T Consensus       194 yv~~~-----~~~~I~~~d~~  209 (326)
T 2ghs_A          194 YFVDT-----KVNRLMRVPLD  209 (326)
T ss_dssp             EEEET-----TTCEEEEEEBC
T ss_pred             EEEEC-----CCCEEEEEEcc
Confidence            77765     36789999974

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.59  E-value=1.2e-05  Score=71.55  Aligned_cols=159  Identities=9%  Similarity=0.069  Sum_probs=105.3

Q ss_pred             EEEEEcCCcCCCCceeeeeccc-CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC----
Q 020756            7 VQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK----   81 (321)
Q Consensus         7 v~v~~~~~~~~~~~i~~~~~f~-~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~----   81 (321)
                      |..|+. +   ++.+.+..... .......+.++|+.++....           ....++.++.+|.....+.+..    
T Consensus        58 V~~~d~-~---G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~-----------~~~~v~~vd~~Gk~l~~~~~~~~~~~  122 (276)
T 3no2_A           58 AKMITR-D---GRELWNIAAPAGCEMQTARILPDGNALVAWCG-----------HPSTILEVNMKGEVLSKTEFETGIER  122 (276)
T ss_dssp             EEEECT-T---SCEEEEEECCTTCEEEEEEECTTSCEEEEEES-----------TTEEEEEECTTSCEEEEEEECCSCSS
T ss_pred             EEEECC-C---CCEEEEEcCCCCccccccEECCCCCEEEEecC-----------CCCEEEEEeCCCCEEEEEeccCCCCc
Confidence            444444 3   45555544421 23345567777777655321           0234566666555333333221    


Q ss_pred             -CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           82 -EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        82 -~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                       ....+.+...++|+.+++.  ..++.+..||.+++.+.++. ......+...|+|+.|+++.   .++.|..+|.++++
T Consensus       123 ~~~~~~~v~~~~~G~~lv~~--~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~---~~~~v~~~d~~tG~  197 (276)
T 3no2_A          123 PHAQFRQINKNKKGNYLVPL--FATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACG---DAHCFVQLNLESNR  197 (276)
T ss_dssp             GGGSCSCCEECTTSCEEEEE--TTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECB---TTSEEEEECTTTCC
T ss_pred             ccccccCceECCCCCEEEEe--cCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeC---CCCeEEEEeCcCCc
Confidence             1245567889999988774  56789999999988888873 34556778899999998876   56789999999998


Q ss_pred             EEEeeeCC--------CeeeEEEccCCCEEEEEE
Q 020756          160 QLGTTRAE--------CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       160 ~i~~~~~~--------~~~~~~wSpdG~~l~t~~  185 (321)
                      .+-.+...        .+..+...++|..+++..
T Consensus       198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            87776532        256678889999888875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.52  E-value=2.8e-05  Score=73.79  Aligned_cols=213  Identities=11%  Similarity=0.082  Sum_probs=126.9

Q ss_pred             CceEEEEEcCCcCCCCceeeeec-----c-c---CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-c
Q 020756            4 PASVQIYACGKDLQSQPLARRSF-----F-R---CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-H   73 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~-----f-~---~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~   73 (321)
                      .++|.|+++.+. ++++...+.+     + +   ..-..+..+|+|  |++.+.-+.  .|.   +...+.+++.... -
T Consensus       105 s~~I~viD~~t~-p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~--~g~---~~g~v~vlD~~T~~v  176 (462)
T 2ece_A          105 SSRIYIIDTKPN-PREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE--EGE---GPGGILMLDHYSFEP  176 (462)
T ss_dssp             TCCEEEEECCSC-TTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET--TSC---SCCEEEEECTTTCCE
T ss_pred             CCeEEEEECCCC-CCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc--CCC---CCCeEEEEECCCCeE
Confidence            367888888642 2444434433     1 1   223456788999  444332221  221   3345788876643 2


Q ss_pred             eeeeecC--CCCCeEEEEECcCCCEEEEEE-c----------------cCCCeEEEEeCCC-ceeEEeCCc----CeeeE
Q 020756           74 EGLVPLR--KEGPVHDVQWSYSGSEFAVVY-G----------------FMPASATIFNKKC-RPILELGSG----PYNTV  129 (321)
Q Consensus        74 ~~~v~l~--~~~~v~~~~wsP~g~~l~~~~-g----------------~~~~~i~i~d~~~-~~~~~~~~~----~~~~~  129 (321)
                      ...+...  ..+--+++.|+|+++.+++.. |                ....+|.+||+.. +.+.++.-+    ....+
T Consensus       177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i  256 (462)
T 2ece_A          177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL  256 (462)
T ss_dssp             EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred             EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence            3333322  123456899999999777742 0                1246999999964 344555221    22345


Q ss_pred             EE--cCCCCeEEEEcc---CCCCCcEEEEECCCCe--EEEee--e------------------CCCeeeEEEccCCCEEE
Q 020756          130 RW--NPKGKFLCLAGF---GNLPGDMAFWDYVDGK--QLGTT--R------------------AECSVTSEWSPDGRYFM  182 (321)
Q Consensus       130 ~~--sPdG~~l~~~g~---~n~~g~i~iwD~~~~~--~i~~~--~------------------~~~~~~~~wSpdG~~l~  182 (321)
                      .|  +|+|+++.++..   .++.++|.+|..+.++  .+..+  .                  ......+.+||||++|.
T Consensus       257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY  336 (462)
T 2ece_A          257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY  336 (462)
T ss_dssp             EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred             EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence            45  999999888763   2245788887765552  11111  1                  12456799999999999


Q ss_pred             EEEcCCceeecCcEEEEeec----CceeEEeccC----------------ceEEEEEecCCCCCCCC
Q 020756          183 TATTAPRLQIDNGIKIFHHN----GSLFFKKMFD----------------KLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       183 t~~s~~rl~~d~~v~iw~~~----g~~l~~~~~~----------------~~~~~~w~P~~~~~~~~  229 (321)
                      ++.-     ..+.|.+||++    .+++......                .-..+..+|++..+|-.
T Consensus       337 VSnr-----g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa  398 (462)
T 2ece_A          337 LSLW-----GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT  398 (462)
T ss_dssp             EEET-----TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred             EEeC-----CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence            8884     58899999984    2334333322                24678889988877754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.49  E-value=0.00013  Score=63.77  Aligned_cols=149  Identities=9%  Similarity=-0.034  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-e--CCcCeeeEEEcCCCCeE
Q 020756           63 KLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~--~~~~~~~~~~sPdG~~l  138 (321)
                      .|+.++..+. ...+.+. ....++++.++|+|+.++..  ...+.+.+||..+..... +  .....+.+.+.|+|++.
T Consensus        79 ~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~  155 (299)
T 2z2n_A           79 KIGRITKKGI-IKEYTLPNPDSAPYGITEGPNGDIWFTE--MNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALW  155 (299)
T ss_dssp             EEEEECTTSC-EEEEECSSTTCCEEEEEECTTSCEEEEE--TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred             eEEEECCCCc-EEEEeCCCcCCCceeeEECCCCCEEEEe--cCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence            4777776654 2333333 34578999999999766553  345689999984433221 2  23567899999999877


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEe-eeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-e--ccC
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-K--MFD  212 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~-~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~--~~~  212 (321)
                      +...   ..+.|..||. +++.... ...  ..+..++++++|+++++..      .++.+.+|+.+|..... .  ...
T Consensus       156 v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~~~~~~  225 (299)
T 2z2n_A          156 FTEN---QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI------IGNKIGRITTSGEITEFKIPTPNA  225 (299)
T ss_dssp             EEET---TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET------TTTEEEEECTTCCEEEEECSSTTC
T ss_pred             EEeC---CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc------CCceEEEECCCCcEEEEECCCCCC
Confidence            7664   4578999999 6654432 222  2577899999999666554      26789999987664422 1  234


Q ss_pred             ceEEEEEecCCC
Q 020756          213 KLFQAEWKPVSP  224 (321)
Q Consensus       213 ~~~~~~w~P~~~  224 (321)
                      .+..+.+.|++.
T Consensus       226 ~~~~i~~~~~g~  237 (299)
T 2z2n_A          226 RPHAITAGAGID  237 (299)
T ss_dssp             CEEEEEECSTTC
T ss_pred             CceeEEECCCCC
Confidence            678888888765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.49  E-value=1.9e-05  Score=74.36  Aligned_cols=172  Identities=8%  Similarity=-0.035  Sum_probs=106.8

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  110 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i  110 (321)
                      ...|.|+++|+ |++..     .      +...|+.++..+.....+... ....+ ++|+|+|+.|+++.......+.+
T Consensus       133 P~~la~d~~g~-lyv~d-----~------~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~  198 (409)
T 3hrp_A          133 MWGIAAVGNNT-VLAYQ-----R------DDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYV  198 (409)
T ss_dssp             EEEEEECSTTE-EEEEE-----T------TTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred             ceEEEEeCCCC-EEEEe-----c------CCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEE
Confidence            45677888876 44421     1      223477888776533333222 22334 99999999888763222228888


Q ss_pred             EeCCCce-eEEe------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe----eeCC---Cee-eEEEc
Q 020756          111 FNKKCRP-ILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT----TRAE---CSV-TSEWS  175 (321)
Q Consensus       111 ~d~~~~~-~~~~------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~----~~~~---~~~-~~~wS  175 (321)
                      |+..... ...+      .....+.++++|++..|.++.   .++.|+.||..++.....    ....   ... .++|+
T Consensus       199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d---~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~  275 (409)
T 3hrp_A          199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVD---SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY  275 (409)
T ss_dssp             EEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEEC---TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred             EEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEE---CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence            8875432 2233      335677899999655566665   568999999987753322    1111   113 89999


Q ss_pred             cCCCEEEEEEcCCceeecCcEEEEeecCcee-EEec---------------cCceEEEEEecCCC
Q 020756          176 PDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FKKM---------------FDKLFQAEWKPVSP  224 (321)
Q Consensus       176 pdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~~~---------------~~~~~~~~w~P~~~  224 (321)
                      |++..|..+..     ..+.|+.|+.+|... ....               ......+++.|+..
T Consensus       276 p~~g~lyv~d~-----~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          276 FVDSNFYMSDQ-----NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             TTTTEEEEEET-----TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             CCCCEEEEEeC-----CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence            97555555554     378899999988643 2222               23477899999876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.47  E-value=0.00015  Score=63.29  Aligned_cols=147  Identities=8%  Similarity=-0.054  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcCeeeEEEcCCCCe
Q 020756           63 KLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKF  137 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~sPdG~~  137 (321)
                      .|+.++..+.. ..+.+. ....++++.++++|+.++..  ...+.+..||..+. +..+    +......+.++|+|++
T Consensus       121 ~i~~~d~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l  196 (299)
T 2z2n_A          121 RIGRITDDGKI-REYELPNKGSYPSFITLGSDNALWFTE--NQNNAIGRITESGD-ITEFKIPTPASGPVGITKGNDDAL  196 (299)
T ss_dssp             EEEEECTTCCE-EEEECSSTTCCEEEEEECTTSCEEEEE--TTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSSE
T ss_pred             eEEEECCCCCE-EEecCCCCCCCCceEEEcCCCCEEEEe--CCCCEEEEEcCCCc-EEEeeCCCCCCcceeEEECCCCCE
Confidence            57777764442 233322 34568999999999766552  44568999998443 3332    2345778999999997


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEe-eeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-e--cc
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-K--MF  211 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~-~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~--~~  211 (321)
                      .+...   ..+.|.+||. +++.... ...  ..+..+.++++|+.+++...      ++.|.+||.+|..... .  ..
T Consensus       197 ~v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~  266 (299)
T 2z2n_A          197 WFVEI---IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG------ANKIGRLTSNNIIEEYPIQIKS  266 (299)
T ss_dssp             EEEET---TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT------TTEEEEEETTTEEEEEECSSSS
T ss_pred             EEEcc---CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC------CceEEEECCCCceEEEeCCCCC
Confidence            66654   4678999999 6654332 221  26778999999996655532      7889999987754321 1  22


Q ss_pred             CceEEEEEecCCC
Q 020756          212 DKLFQAEWKPVSP  224 (321)
Q Consensus       212 ~~~~~~~w~P~~~  224 (321)
                      ..+..+.+ ++..
T Consensus       267 ~~~~~i~~-~~g~  278 (299)
T 2z2n_A          267 AEPHGICF-DGET  278 (299)
T ss_dssp             CCEEEEEE-CSSC
T ss_pred             CccceEEe-cCCC
Confidence            46777777 6544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.46  E-value=9.7e-06  Score=72.00  Aligned_cols=130  Identities=11%  Similarity=0.089  Sum_probs=88.2

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEEC----cCCCEEEEEEccCCCeEEEEeCC--Cc-----eeEEeCC---cCee
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWS----YSGSEFAVVYGFMPASATIFNKK--CR-----PILELGS---GPYN  127 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~ws----P~g~~l~~~~g~~~~~i~i~d~~--~~-----~~~~~~~---~~~~  127 (321)
                      ..|+.++..+.....  .......+.++|+    |+|+.+.++ ....+.|.+||.+  +.     ....+..   ....
T Consensus       153 ~~l~~~~~~g~~~~~--~~~~~~~~~i~~~~~~d~dg~~l~v~-~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  229 (314)
T 1pjx_A          153 GSIYCFTTDGQMIQV--DTAFQFPNGIAVRHMNDGRPYQLIVA-ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             EEEEEECTTSCEEEE--EEEESSEEEEEEEECTTSCEEEEEEE-ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CeEEEECCCCCEEEe--ccCCCCcceEEEecccCCCCCEEEEE-ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence            357877766432221  1233456889999    999877665 3345789999975  22     1222321   4567


Q ss_pred             eEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          128 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       128 ~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .+.++++|++.+...   .++.|.+||.++++.+..+..  ..+..++|+|||++|..++.     .++.|..|++.
T Consensus       230 ~i~~d~~G~l~v~~~---~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~-----~~~~l~~~~~~  298 (314)
T 1pjx_A          230 GMDFDEDNNLLVANW---GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH-----ENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEBTTCCEEEEEE---TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET-----TTTEEEEEECS
T ss_pred             ceEECCCCCEEEEEc---CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC-----CCCeEEEEeCC
Confidence            899999998877765   457899999986765554443  36888999999997777664     25688888764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.45  E-value=3e-06  Score=86.07  Aligned_cols=144  Identities=6%  Similarity=0.008  Sum_probs=87.2

Q ss_pred             ceEEeC-CCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCC---C
Q 020756           32 VQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP---A  106 (321)
Q Consensus        32 ~~~~Ws-p~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~---~  106 (321)
                      ..+.|| |||++|++...    ..|...   ..||.+++.++ ..  +.........++.|+|||+.|+++.....   .
T Consensus       177 ~~~~~S~PDG~~lAy~~~----~~G~~~---~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVD----MSGNEV---YTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEECTTTTCEEEEEEE----SSSSSC---EEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             eeeEecCCCCCEEEEEEe----CCCCce---EEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCC
Confidence            467999 99999999753    223221   24899998775 31  11001122357899999998888643222   3


Q ss_pred             eEEEEeCCCc---eeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--eE--EEeeeCCCeeeEEEcc
Q 020756          107 SATIFNKKCR---PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQ--LGTTRAECSVTSEWSP  176 (321)
Q Consensus       107 ~i~i~d~~~~---~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--~~--i~~~~~~~~~~~~wSp  176 (321)
                      .|.++++.+.   ....+   +......+.|||||++|++.........|+++|+.++  +.  .......  ....|++
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~  325 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDV  325 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--TTCCEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--CCceEEE
Confidence            6777888543   12222   2234567899999999998764334568999999875  22  2222221  1223444


Q ss_pred             C---CCEEEEEEc
Q 020756          177 D---GRYFMTATT  186 (321)
Q Consensus       177 d---G~~l~t~~s  186 (321)
                      +   |..|+..+.
T Consensus       326 ~~~~g~~l~~~t~  338 (751)
T 2xe4_A          326 QMHGTSHLVILTN  338 (751)
T ss_dssp             EEETTTEEEEEEC
T ss_pred             eeeeCCEEEEEeC
Confidence            4   777776664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.42  E-value=0.00029  Score=61.48  Aligned_cols=174  Identities=7%  Similarity=-0.032  Sum_probs=108.2

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASA  108 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~-~~~i  108 (321)
                      ....+.+++++..|++..   .        +...|+.++.++.....+.........+++++|++..|.++.... .+.|
T Consensus        80 ~p~~ia~d~~~~~lyv~d---~--------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I  148 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTD---S--------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI  148 (267)
T ss_dssp             CEEEEEEETTTTEEEEEE---T--------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred             CccEEEEEecCCeEEEEE---C--------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence            345667777777666541   1        223467777777533332211224568999999877777653221 3588


Q ss_pred             EEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEE
Q 020756          109 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTA  184 (321)
Q Consensus       109 ~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~  184 (321)
                      ..+++++.....+   .....+.++++|+++.|.++..+  .+.|.++|++.......... .....++  +|+.+|..+
T Consensus       149 ~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~~~~~P~gi~--~d~~~lyva  224 (267)
T 1npe_A          149 ETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVT--SYGKNLYYT  224 (267)
T ss_dssp             EEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEE--EETTEEEEE
T ss_pred             EEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCceEEEecCCCCceEEE--EeCCEEEEE
Confidence            8898877654444   23456789999999888887743  47999999975543333332 2344454  456666666


Q ss_pred             EcCCceeecCcEEEEeec-CceeEEeccC---ceEEEEEecCC
Q 020756          185 TTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVS  223 (321)
Q Consensus       185 ~s~~rl~~d~~v~iw~~~-g~~l~~~~~~---~~~~~~w~P~~  223 (321)
                      ..     ..+.|.+++.. |+.+......   ..+.+.+.|+.
T Consensus       225 ~~-----~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          225 DW-----KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             ET-----TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             EC-----CCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            64     36788999985 6666444333   35677777764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.39  E-value=0.0001  Score=64.44  Aligned_cols=159  Identities=6%  Similarity=-0.052  Sum_probs=105.8

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  110 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i  110 (321)
                      ...+.|++++..|++.-   .        +...|+.++.++.....+........+.++++|++..+.++. ...+.|.+
T Consensus        38 ~~gi~~d~~~~~ly~~d---~--------~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d-~~~~~I~~  105 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTD---I--------SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD-SQLDRIEV  105 (267)
T ss_dssp             EEEEEEETTTTEEEEEE---T--------TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE-TTTTEEEE
T ss_pred             EEEEEEecCCCEEEEEE---C--------CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEE-CCCCEEEE
Confidence            45789999888887742   1        233477888777533322212224678999999888887763 34568999


Q ss_pred             EeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756          111 FNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       111 ~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~~l~t~~  185 (321)
                      +++++.....+   +....+.++++|++..|.++..+...+.|+.++++...  .+..........++|+|++.+|..+.
T Consensus       106 ~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence            99976544443   22456789999988777776633224789999886432  22111122567899999988888777


Q ss_pred             cCCceeecCcEEEEeecCcee
Q 020756          186 TAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       186 s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      .     ..+.|.+++++|..+
T Consensus       186 ~-----~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          186 A-----GTHRAECLNPAQPGR  201 (267)
T ss_dssp             T-----TTTEEEEEETTEEEE
T ss_pred             C-----CCCEEEEEecCCCce
Confidence            5     367899999876543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.32  E-value=3.8e-05  Score=75.20  Aligned_cols=203  Identities=8%  Similarity=0.057  Sum_probs=124.9

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEeccc---------------------------CCCc-
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD---------------------------KTNQ-   56 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d---------------------------~t~~-   56 (321)
                      +.|.+.+..+   .+.+.+..... .--.+..+|+|+++++.+.....                           +.|+ 
T Consensus       175 ~~vtvID~~t---~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          175 NVFTAVDADK---WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEEEEETTT---TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             ceEEEEECCC---CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            3566666666   56667766543 44567789999999886532100                           0122 


Q ss_pred             eeecceeEEEEEcCC--C-c-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-------------eeE
Q 020756           57 SYYGESKLNYLTTDG--T-H-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-------------PIL  119 (321)
Q Consensus        57 s~~g~~~l~~l~~~g--~-~-~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-------------~~~  119 (321)
                      .|.+.  +..|+...  . . ...+++.  ...+.+.++|||+++++. +....++.++|+...             .+.
T Consensus       251 ~~i~~--V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~-~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~  325 (595)
T 1fwx_A          251 QELNG--VKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVA  325 (595)
T ss_dssp             EEETT--EEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred             eEECc--EEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEe-CCCCCeEEEEECcccccccccccCcccceEE
Confidence            22332  55666543  1 1 2234433  356789999999998886 555669999999643             223


Q ss_pred             EeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC----------CeEEEeeeCC-Ceee------EEEccCCCEE
Q 020756          120 ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD----------GKQLGTTRAE-CSVT------SEWSPDGRYF  181 (321)
Q Consensus       120 ~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~----------~~~i~~~~~~-~~~~------~~wSpdG~~l  181 (321)
                      .+. ...-..+.|+|+| ++.++.|  ++++|.+||+++          .+.+.++.-+ ..-.      +..+|||+||
T Consensus       326 ~v~vG~gP~h~aF~~dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l  402 (595)
T 1fwx_A          326 EPELGLGPLHTAFDGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL  402 (595)
T ss_dssp             CCBCCSCEEEEEECTTS-EEEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred             EcCCCCCcceEEECCCC-eEEEEEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence            331 2234567899999 6666554  679999999987          5667776665 2222      3458999999


Q ss_pred             EEEEcCCceeecCcE-----------EEEeecCcee---EEe-ccCceEEEEEecCC
Q 020756          182 MTATTAPRLQIDNGI-----------KIFHHNGSLF---FKK-MFDKLFQAEWKPVS  223 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v-----------~iw~~~g~~l---~~~-~~~~~~~~~w~P~~  223 (321)
                      +++.-.    ..+.+           .|+|++|..+   +.. ...+-.++..-|.+
T Consensus       403 ~~~Nk~----skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~  455 (595)
T 1fwx_A          403 VCLSKF----SKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPS  455 (595)
T ss_dssp             EEEESC----CTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTT
T ss_pred             EEcCCC----CccccccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccHH
Confidence            988842    11333           8999987654   111 12344555555543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.28  E-value=5.4e-05  Score=70.34  Aligned_cols=111  Identities=10%  Similarity=-0.063  Sum_probs=71.5

Q ss_pred             CcCCCEEEEEEccCCCeEEEEeCCCcee---EEe--C----------CcCeeeEEEcCCCCeEEEEccCC-C-----CCc
Q 020756           91 SYSGSEFAVVYGFMPASATIFNKKCRPI---LEL--G----------SGPYNTVRWNPKGKFLCLAGFGN-L-----PGD  149 (321)
Q Consensus        91 sP~g~~l~~~~g~~~~~i~i~d~~~~~~---~~~--~----------~~~~~~~~~sPdG~~l~~~g~~n-~-----~g~  149 (321)
                      ++++..++++  .. +.+.+.|..+...   ..+  .          ......+.++|||+.|.++...+ .     ...
T Consensus       219 ~~~~~~~~~v--s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~  295 (368)
T 1mda_H          219 ANYPGMLVWA--VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN  295 (368)
T ss_dssp             ETTTTEEEEC--BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred             cccCCEEEEE--cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence            5555555554  33 6788888754321   111  1          01122378999999888764200 0     135


Q ss_pred             EEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE
Q 020756          150 MAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  208 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~  208 (321)
                      +.++|+.+++.+..+.-. ....+.|+|||++++.+...    .++.|.++|.. ++.+..
T Consensus       296 ~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~----~~~~VsVID~~t~kvv~~  352 (368)
T 1mda_H          296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA----GTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET----TTTEEEEEESSSCEEEEE
T ss_pred             EEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC----CCCeEEEEECCCCcEEEE
Confidence            669999999988877654 57889999999976666630    28999999995 444433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.25  E-value=0.00089  Score=58.37  Aligned_cols=149  Identities=11%  Similarity=0.026  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-Ee--CCcCeeeEEEcCCCCeE
Q 020756           63 KLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~~--~~~~~~~~~~sPdG~~l  138 (321)
                      .|+.++..+. ...+.+. ....+++++++++|+.++..  ...+.+..||..+.... .+  .....+.+.+.|+|++.
T Consensus        84 ~v~~~d~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~  160 (300)
T 2qc5_A           84 KIGKLSKKGG-FTEYPLPQPDSGPYGITEGLNGDIWFTQ--LNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALW  160 (300)
T ss_dssp             EEEEECTTSC-EEEEECSSTTCCEEEEEECSTTCEEEEE--TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred             eEEEECCCCC-eEEecCCCCCCCCccceECCCCCEEEEc--cCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEE
Confidence            4777776644 3333333 33578999999999866552  33568999998744332 22  24567889999999955


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEee-eC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe---ccC
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTT-RA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFD  212 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~-~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~---~~~  212 (321)
                      +...   ..+.|..||. +++..... ..  ..+..+.++++|+.+++...      .+.+.+|+.+|......   ...
T Consensus       161 v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~  230 (300)
T 2qc5_A          161 FTEN---QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITTTGEISEYDIPTPNA  230 (300)
T ss_dssp             EEET---TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECTTCCEEEEECSSTTC
T ss_pred             EEec---CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcCCCcEEEEECCCCCC
Confidence            5554   4578999998 55443321 11  25778999999986665542      56799999877655321   234


Q ss_pred             ceEEEEEecCCC
Q 020756          213 KLFQAEWKPVSP  224 (321)
Q Consensus       213 ~~~~~~w~P~~~  224 (321)
                      .+..+.+.+++.
T Consensus       231 ~~~~i~~d~~g~  242 (300)
T 2qc5_A          231 RPHAITAGKNSE  242 (300)
T ss_dssp             CEEEEEECSTTC
T ss_pred             CceEEEECCCCC
Confidence            677888888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.25  E-value=0.00016  Score=70.72  Aligned_cols=161  Identities=7%  Similarity=0.049  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCc-eeeeecCCCCCeEEEEE-C-cCCCEEEEEEc----------------cCCCeEEEEeCCCc-eeEEeC
Q 020756           63 KLNYLTTDGTH-EGLVPLRKEGPVHDVQW-S-YSGSEFAVVYG----------------FMPASATIFNKKCR-PILELG  122 (321)
Q Consensus        63 ~l~~l~~~g~~-~~~v~l~~~~~v~~~~w-s-P~g~~l~~~~g----------------~~~~~i~i~d~~~~-~~~~~~  122 (321)
                      .+..|++.... ...+.+......+.+++ + |+++++++...                ..++.+.+.|.... .+.++.
T Consensus       113 rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~  192 (595)
T 1fwx_A          113 RVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL  192 (595)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence            46666665542 23345555567889998 5 99999877531                11247888998654 334441


Q ss_pred             -CcCeeeEEEcCCCCeEEEEccCCC-----------------------------------CCcEEEEECCC--CeE-EEe
Q 020756          123 -SGPYNTVRWNPKGKFLCLAGFGNL-----------------------------------PGDMAFWDYVD--GKQ-LGT  163 (321)
Q Consensus       123 -~~~~~~~~~sPdG~~l~~~g~~n~-----------------------------------~g~i~iwD~~~--~~~-i~~  163 (321)
                       .+.-.-+..+|||++++++++...                                   -+.|.+.|..+  ++. +..
T Consensus       193 Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~  272 (595)
T 1fwx_A          193 VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY  272 (595)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE
T ss_pred             eCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEE
Confidence             124456889999999999875321                                   13588888887  444 444


Q ss_pred             eeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-------------eeEEecc-CceEEEEEecCCCCCCC
Q 020756          164 TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-------------LFFKKMF-DKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       164 ~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-------------~l~~~~~-~~~~~~~w~P~~~~~~~  228 (321)
                      +.. .....+.+||||+|++.+..     .++.+.++|+...             .+..... .....+.|+|++ .+|.
T Consensus       273 Ipvg~~PhGv~~sPDGk~v~V~~~-----~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~  346 (595)
T 1fwx_A          273 IPIANNPHGCNMAPDKKHLCVAGK-----LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYT  346 (595)
T ss_dssp             EEEESSCCCEEECTTSSEEEEECT-----TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEE
T ss_pred             EecCCCceEEEEcCCCCEEEEeCC-----CCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEE
Confidence            433 36778999999999998886     5899999999633             1122222 267788999998 6665


Q ss_pred             C
Q 020756          229 D  229 (321)
Q Consensus       229 ~  229 (321)
                      .
T Consensus       347 t  347 (595)
T 1fwx_A          347 S  347 (595)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.23  E-value=4.2e-05  Score=71.11  Aligned_cols=113  Identities=11%  Similarity=0.033  Sum_probs=78.3

Q ss_pred             EECcCCCEEEEEEc-cCCC--eEEEEeCCC-ceeEEeCCcCeeeEEEcCCCCeEEEEccC-------CCCCcEEEEECCC
Q 020756           89 QWSYSGSEFAVVYG-FMPA--SATIFNKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFG-------NLPGDMAFWDYVD  157 (321)
Q Consensus        89 ~wsP~g~~l~~~~g-~~~~--~i~i~d~~~-~~~~~~~~~~~~~~~~sPdG~~l~~~g~~-------n~~g~i~iwD~~~  157 (321)
                      ...|+++.+.++.+ ..+.  .+.+||... +.+..+..+....+.+||||++|.++...       ..++.|.+||..+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            34578887777633 2222  789999854 45556643333399999999999998631       1246799999998


Q ss_pred             CeEEEeeeCC---------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          158 GKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       158 ~~~i~~~~~~---------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      ++.+..+.-.         ....+.|||||++|+++...    .++.|.++| ....+
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----~~~~v~viD-~t~~~  159 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----AGPAVGLVV-QGGSS  159 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----CCCeEEEEE-CCCCE
Confidence            8877765432         34578999999999998731    157799999 65443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.22  E-value=0.00085  Score=58.49  Aligned_cols=148  Identities=9%  Similarity=-0.036  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-e--CCcCeeeEEEcCCCCeE
Q 020756           63 KLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~--~~~~~~~~~~sPdG~~l  138 (321)
                      .|+.++..+. ...+.+. ....++++.++++|+.++.  ....+.|..||..+....- +  +......+.+.|+|++.
T Consensus       126 ~i~~~~~~g~-~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~  202 (300)
T 2qc5_A          126 RIGKLTADGT-IYEYDLPNKGSYPAFITLGSDNALWFT--ENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALW  202 (300)
T ss_dssp             EEEEECTTSC-EEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred             eEEEECCCCC-EEEccCCCCCCCceeEEECCCCCEEEE--ecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEE
Confidence            5777776643 2233333 3457889999999984443  2335689999985443321 2  23457789999999876


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEe-eeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-ec--cC
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-KM--FD  212 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~-~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~~--~~  212 (321)
                      +...   ..+.|.+||. +++.... ...  ..+..++++++|+.+++..      .++.|.+|+.+|..... ..  ..
T Consensus       203 v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~~~~~~  272 (300)
T 2qc5_A          203 FVEI---MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW------GANQIGRITNDNTIQEYQLQTENA  272 (300)
T ss_dssp             EEET---TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET------TTTEEEEECTTSCEEEEECCSTTC
T ss_pred             EEcc---CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc------CCCeEEEECCCCcEEEEECCccCC
Confidence            6654   4568999998 5543332 221  2678899999999555554      26889999987755421 11  23


Q ss_pred             ceEEEEEecCC
Q 020756          213 KLFQAEWKPVS  223 (321)
Q Consensus       213 ~~~~~~w~P~~  223 (321)
                      .+..+...|++
T Consensus       273 ~~~~i~~~~~g  283 (300)
T 2qc5_A          273 EPHGITFGKDG  283 (300)
T ss_dssp             CCCCEEECTTS
T ss_pred             ccceeEeCCCC
Confidence            44555555554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.22  E-value=0.00022  Score=72.35  Aligned_cols=168  Identities=9%  Similarity=0.012  Sum_probs=93.2

Q ss_pred             eEEEEEcCCcCCC-CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee--eee-cCC
Q 020756            6 SVQIYACGKDLQS-QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVP-LRK   81 (321)
Q Consensus         6 ~v~v~~~~~~~~~-~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~--~v~-l~~   81 (321)
                      .|.|+++..   + +.+. ..+ ......+.|+|||+.|++...   +.++..    ..||++.+.+....  .+. ...
T Consensus       202 ~l~v~dl~~---g~~~l~-~~~-~~~~~~~~WspDg~~l~y~~~---d~~~~~----~~v~~~~lgt~~~~~~lv~~~~~  269 (751)
T 2xe4_A          202 TIEFKRISD---PSQTIA-DKV-SGTNGEIVWGPDHTSLFYVTK---DETLRE----NKVWRHVMGKLQSEDVCLYEEHN  269 (751)
T ss_dssp             EEEEEETTC---TTCCCC-CCE-EEECSCCEECSSTTEEEEEEE---CTTCCE----EEEEEEETTSCGGGCEEEEECCC
T ss_pred             EEEEEECCC---CCEeCC-ccc-cCceeeEEEecCCCEEEEEEE---CCCCCC----CEEEEEECCCCchhcEEEEecCC
Confidence            477777766   4 3221 111 112357899999999988742   222221    35888888765322  221 123


Q ss_pred             CCCeEEEEECcCCCEEEEEEccC-CCeEEEEeCCCc--ee--EEe---CCcCeeeEEEcCCCCeEEEEccCC--CCCcEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR--PI--LEL---GSGPYNTVRWNPKGKFLCLAGFGN--LPGDMA  151 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~--~~--~~~---~~~~~~~~~~sPdG~~l~~~g~~n--~~g~i~  151 (321)
                      .....++.|||||++|++..... ...+.++|+.+.  ..  ..+   .......+.|+. |+.|++.+..+  ....|+
T Consensus       270 ~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~  348 (751)
T 2xe4_A          270 PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLL  348 (751)
T ss_dssp             TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEE
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEE
Confidence            34567889999999999875332 337888898653  23  444   123333444433 66666654221  235788


Q ss_pred             EEECCCC-eEEE-eeeCC-CeeeEEEccCCCEEEEEEc
Q 020756          152 FWDYVDG-KQLG-TTRAE-CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       152 iwD~~~~-~~i~-~~~~~-~~~~~~wSpdG~~l~t~~s  186 (321)
                      .+|+.+. +... .+... ...--.|++++.+|+....
T Consensus       349 ~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~  386 (751)
T 2xe4_A          349 IAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR  386 (751)
T ss_dssp             EEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE
T ss_pred             EEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE
Confidence            8888752 2111 12222 3332345666777776663

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.17  E-value=2.7e-05  Score=72.75  Aligned_cols=119  Identities=13%  Similarity=0.059  Sum_probs=85.0

Q ss_pred             EEEECcCCCEEEEEEcc---CCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEcc-------CCCCCcEEEE
Q 020756           87 DVQWSYSGSEFAVVYGF---MPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGF-------GNLPGDMAFW  153 (321)
Q Consensus        87 ~~~wsP~g~~l~~~~g~---~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~-------~n~~g~i~iw  153 (321)
                      .....|+++.+.+....   +++.+.++|.... .+.++  +..+ . +.+||||++|.++..       |..++.|.+|
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            34557999999887532   2569999999654 45555  5555 4 999999999988752       1124679999


Q ss_pred             ECCCCeEEEeeeCC---------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEecc
Q 020756          154 DYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF  211 (321)
Q Consensus       154 D~~~~~~i~~~~~~---------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~~  211 (321)
                      |..+++.+..+.-.         ....+.+||||+++..+...    .++.|.++|... +.+.....
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----PAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----SSCEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----CCCeEEEEECCCCcEEEEEEC
Confidence            99999888876431         45669999999999988621    268899999954 44444433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.14  E-value=0.00018  Score=68.22  Aligned_cols=166  Identities=15%  Similarity=0.172  Sum_probs=103.5

Q ss_pred             ceeEEEEEcC------CCceeeeecCCCC-CeEEEEE-----------C--cCCCEEEEEEccCCCeEEEEeCCCc----
Q 020756           61 ESKLNYLTTD------GTHEGLVPLRKEG-PVHDVQW-----------S--YSGSEFAVVYGFMPASATIFNKKCR----  116 (321)
Q Consensus        61 ~~~l~~l~~~------g~~~~~v~l~~~~-~v~~~~w-----------s--P~g~~l~~~~g~~~~~i~i~d~~~~----  116 (321)
                      .+.|..++++      +.-..++.+...+ ..|.+.|           +  +++++|++. +..+.+|.++|++.+    
T Consensus        42 ~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~-~l~s~~I~viD~~t~p~~p  120 (462)
T 2ece_A           42 ADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP-GLRSSRIYIIDTKPNPREP  120 (462)
T ss_dssp             CCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE-BTTTCCEEEEECCSCTTSC
T ss_pred             CCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc-cCCCCeEEEEECCCCCCCc
Confidence            3446666665      3323334444432 5667778           7  788888775 666789999998644    


Q ss_pred             -eeEEeC---------CcCeeeEEEcCCCCeEEEEc---cCCCCCcEEEEECCCCeEEEeeeCC-----CeeeEEEccCC
Q 020756          117 -PILELG---------SGPYNTVRWNPKGKFLCLAG---FGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDG  178 (321)
Q Consensus       117 -~~~~~~---------~~~~~~~~~sPdG~~l~~~g---~~n~~g~i~iwD~~~~~~i~~~~~~-----~~~~~~wSpdG  178 (321)
                       .+..+.         ...-..+..+|+| +++++.   .++..+.|.++|.++++.+...+..     ...++-|+|++
T Consensus       121 ~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~  199 (462)
T 2ece_A          121 KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN  199 (462)
T ss_dssp             EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT
T ss_pred             eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC
Confidence             333331         1233467889999 544432   1234578999999999999888632     24568899999


Q ss_pred             CEEEEEE-cCCce------------eecCcEEEEeecCc-eeEEeccC----ceEEEEE--ecCCCCCCC
Q 020756          179 RYFMTAT-TAPRL------------QIDNGIKIFHHNGS-LFFKKMFD----KLFQAEW--KPVSPDKFG  228 (321)
Q Consensus       179 ~~l~t~~-s~~rl------------~~d~~v~iw~~~g~-~l~~~~~~----~~~~~~w--~P~~~~~~~  228 (321)
                      +.++++. ..|+.            +.++.|.+||+... ++......    ....+.+  +|+....|-
T Consensus       200 ~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV  269 (462)
T 2ece_A          200 EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFI  269 (462)
T ss_dssp             TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEE
T ss_pred             CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEE
Confidence            9887774 00000            24789999999644 34443332    2334444  888766553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.10  E-value=0.00011  Score=68.68  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=82.3

Q ss_pred             EeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEc--------cCC
Q 020756           35 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYG--------FMP  105 (321)
Q Consensus        35 ~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP~g~~l~~~~g--------~~~  105 (321)
                      .-.|+|+.+++...       ..+.....++.++..... ...+.... .+ + +.+||||++++++..        ..+
T Consensus        39 ~~~pd~~~vyV~~~-------~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           39 APAPDARRVYVNDP-------AHFAAVTQQFVIDGEAGRVIGMIDGGF-LP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCTTEEEEEEC-------GGGCSSEEEEEEETTTTEEEEEEEECS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCCCCEEEEEcC-------cccCCCCEEEEEECCCCeEEEEEECCC-CC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            45799999888521       011123468888875542 33444433 34 5 999999999888631        124


Q ss_pred             CeEEEEeCCCc-eeEEe--CC-------cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756          106 ASATIFNKKCR-PILEL--GS-------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  167 (321)
Q Consensus       106 ~~i~i~d~~~~-~~~~~--~~-------~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~  167 (321)
                      ..|.+||.... .+.++  +.       ..-..+.++|||++|.++.+. .++.|.++|+.+++.+.++.-.
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-~~~~VsVID~~t~~vv~tI~v~  179 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDLEGKAFKRMLDVP  179 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-SSCEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-CCCeEEEEECCCCcEEEEEECC
Confidence            57999999654 44554  22       134569999999999988631 2478999999999998888654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.06  E-value=0.00041  Score=63.09  Aligned_cols=149  Identities=9%  Similarity=-0.004  Sum_probs=92.3

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee------cCCCCCeEEEEECcCCCEEEEEE
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGPVHDVQWSYSGSEFAVVY  101 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~------l~~~~~v~~~~wsP~g~~l~~~~  101 (321)
                      ......+..+++|+.++....   ...+     ...|+.++ ++. ...++      -.+...++.++++|+|+.+++-.
T Consensus        16 ~~~p~~va~~~~g~~~v~~~~---~~~~-----~~~l~~~~-~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A           16 SLAPGNITLTPDGRLFLSLHQ---FYQP-----EMQVAELT-QDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN   85 (343)
T ss_dssp             SSCEEEEEECTTSCEEEEECG---GGCC-----SCSEEEEE-TTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred             CCCcceEEECCCCCEEEEeCC---CCCC-----ceEEEEEC-CCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence            356778999999976544211   0111     12466666 332 11111      12346789999999987544421


Q ss_pred             cc---CCCeEEEEeCCCc-eeEEe--CC------cCeeeEEEcCCCCeEEEEccCC-CCCcEEEEECCCCeEEEeeeC--
Q 020756          102 GF---MPASATIFNKKCR-PILEL--GS------GPYNTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGKQLGTTRA--  166 (321)
Q Consensus       102 g~---~~~~i~i~d~~~~-~~~~~--~~------~~~~~~~~sPdG~~l~~~g~~n-~~g~i~iwD~~~~~~i~~~~~--  166 (321)
                      +.   .+.+|.+||++.. .+..+  +.      ...+.+.++|++.++.++..+. .++.|.+||+.+++....+..  
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~  165 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP  165 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence            21   1468999999744 34444  21      2458999999877776665310 347899999988765554322  


Q ss_pred             -----------------------------CCeeeEEEccCCCEEEEEEc
Q 020756          167 -----------------------------ECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       167 -----------------------------~~~~~~~wSpdG~~l~t~~s  186 (321)
                                                   ..+..++|||||++|.++..
T Consensus       166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence                                         12456999999999888874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.06  E-value=0.0003  Score=62.28  Aligned_cols=176  Identities=14%  Similarity=0.111  Sum_probs=113.9

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ...+.|+++| .|++.+       +  .++...|..++...+ ....+.+........+.+  +|+++.+. ...++.+.
T Consensus        23 ~~Gl~~~~dg-~Lyvst-------g--~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~-t~~~~~v~   89 (266)
T 2iwa_A           23 TQGLVYAEND-TLFEST-------G--LYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQV-VWLKNIGF   89 (266)
T ss_dssp             EEEEEECSTT-EEEEEE-------C--STTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEE-ETTCSEEE
T ss_pred             cccEEEeCCC-eEEEEC-------C--CCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEE-EecCCEEE
Confidence            3578899985 555532       1  124556888887543 344455543323334444  46677766 35678999


Q ss_pred             EEeCCC-ceeEEeCCc-CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-------CeeeEEEccCCCE
Q 020756          110 IFNKKC-RPILELGSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRY  180 (321)
Q Consensus       110 i~d~~~-~~~~~~~~~-~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-------~~~~~~wSpdG~~  180 (321)
                      ++|... +.+.++..+ +. ....+|||+.|+++.   ..+.|.++|..+.+.+..+.-.       ....++|. ||+.
T Consensus        90 viD~~t~~v~~~i~~g~~~-g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           90 IYDRRTLSNIKNFTHQMKD-GWGLATDGKILYGSD---GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEETTTTEEEEEEECCSSS-CCEEEECSSSEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEECCCCcEEEEEECCCCC-eEEEEECCCEEEEEC---CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            999854 566666322 22 244677899888876   4689999999998777665521       35578888 8854


Q ss_pred             EEEEEcCCceeecCcEEEEee-cCceeEEecc---------------CceEEEEEecCCCCCCCCc
Q 020756          181 FMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF---------------DKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~---------------~~~~~~~w~P~~~~~~~~~  230 (321)
                      ++...      .++.|.+-|. +|+.+.....               ..+..++|.|+...+|-..
T Consensus       165 yvn~~------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          165 WANIW------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEEET------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EEecC------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            43333      3788999998 5665544332               2568999999998888653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.02  E-value=0.0004  Score=62.64  Aligned_cols=197  Identities=13%  Similarity=0.099  Sum_probs=115.6

Q ss_pred             EEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCcee--ecceeEEEEEcCCCceeeeecCCCCCe
Q 020756            8 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPV   85 (321)
Q Consensus         8 ~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~--~g~~~l~~l~~~g~~~~~v~l~~~~~v   85 (321)
                      +||.++..  +......+-   +.+ -.++++|++|+++...+.......+  .....||.++.+|....++.   ....
T Consensus        38 ~ly~~~~d--g~~~~~l~~---~~~-~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~---~~~~  108 (302)
T 3s25_A           38 RLYAMNID--GSNIHKLSN---DTA-MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD---PDPC  108 (302)
T ss_dssp             EEEEEETT--SCSCEEEEE---EEE-EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE---CSCE
T ss_pred             eEEEEcCC--CCCCEEccC---Cce-eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee---cCCc
Confidence            57777763  344444442   222 4669999999997543211111111  12456999999998554443   2232


Q ss_pred             EEEEECcCCCEEEEEE--ccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756           86 HDVQWSYSGSEFAVVY--GFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  163 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~--g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~  163 (321)
                        ..|+++|+.|+.+.  ......|...++.+.....+....+  ..|+|+|+.|...+.  ....|++.+++.+.....
T Consensus       109 --~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~--g~~~Iy~~~l~g~~~~~l  182 (302)
T 3s25_A          109 --IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNP--KNGQLYRYDTASQSEALF  182 (302)
T ss_dssp             --EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECT--TTCCEEEEETTTTEEEEE
T ss_pred             --cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeC--CCceEEEEECCCCCEEEE
Confidence              37889999999874  1233466667787766666633333  457889999999873  357899999977654443


Q ss_pred             eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCC
Q 020756          164 TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       164 ~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~  227 (321)
                      +... .. ..++|+|++|+.....    ....|..-+++|..........+  ..|.|....||
T Consensus       183 ~~~~-~~-~~~~P~g~~iy~t~~~----~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy  238 (302)
T 3s25_A          183 YDCN-CY-KPVVLDDTNVYYMDVN----RDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIF  238 (302)
T ss_dssp             ECSC-EE-EEEEEETTEEEEEEGG----GTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEE
T ss_pred             eCCC-cc-ceeeecCCEEEEEEcC----CCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEE
Confidence            4432 22 3466999999987631    01234444556654322222233  33667666665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.97  E-value=0.0023  Score=58.65  Aligned_cols=157  Identities=9%  Similarity=-0.013  Sum_probs=103.2

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  110 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i  110 (321)
                      ...+.|++.+..|++.     |.      ....|+.++.++.....+..........+++++.+..|.++. .....|.+
T Consensus        75 ~~~l~~d~~~~~ly~~-----D~------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d-~~~~~I~~  142 (349)
T 3v64_C           75 AIALDFHHRRELVFWS-----DV------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD-SGTSRIEV  142 (349)
T ss_dssp             EEEEEEETTTTEEEEE-----ET------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE-TTTTEEEE
T ss_pred             eEEEEEeccccEEEEE-----ec------cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEc-CCCCeEEE
Confidence            4567777776666653     11      223477888777643333222223456889998777777763 33568999


Q ss_pred             EeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEEEE
Q 020756          111 FNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       111 ~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t~~  185 (321)
                      +++++.....+   ....-+.+++.|.+..|..+..++ .+.|+.+|++.........  ......++|+|++..|..+-
T Consensus       143 ~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD  221 (349)
T 3v64_C          143 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD  221 (349)
T ss_dssp             EETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence            99987655444   234568899999888888876332 3789999986432222222  22567899999888888877


Q ss_pred             cCCceeecCcEEEEeecCce
Q 020756          186 TAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       186 s~~rl~~d~~v~iw~~~g~~  205 (321)
                      +     ..+.|..++++|..
T Consensus       222 ~-----~~~~I~~~~~dG~~  236 (349)
T 3v64_C          222 A-----KHHVIERANLDGSH  236 (349)
T ss_dssp             T-----TTTEEEEEETTSCS
T ss_pred             C-----CCCEEEEEeCCCCc
Confidence            5     36678888888753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.95  E-value=0.0015  Score=60.72  Aligned_cols=158  Identities=9%  Similarity=-0.011  Sum_probs=104.1

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ....+.|.+.+..|++.     |.      ....|+.++.++.....+..........+++++.+..|.++. .....|.
T Consensus       117 ~~~gl~~d~~~~~ly~~-----D~------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d-~~~~~I~  184 (386)
T 3v65_B          117 NAIALDFHHRRELVFWS-----DV------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD-SGTSRIE  184 (386)
T ss_dssp             CEEEEEEETTTTEEEEE-----ET------TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE-TTTTEEE
T ss_pred             ccEEEEEecCCCeEEEE-----eC------CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc-CCCCeEE
Confidence            35567888877777664     11      223478888877643333222223456788988777777763 3356899


Q ss_pred             EEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEEE
Q 020756          110 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTA  184 (321)
Q Consensus       110 i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t~  184 (321)
                      ++++++.....+   +...-+.+++.|.+..|..+..++ .+.|+.+|++.........  ......++|+|++..|..+
T Consensus       185 ~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          185 VANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             ECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEE
T ss_pred             EEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEE
Confidence            999877655444   234568899999988888876332 3789999986442222222  2256789999988888887


Q ss_pred             EcCCceeecCcEEEEeecCce
Q 020756          185 TTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       185 ~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      -+     ..+.|..++++|..
T Consensus       264 D~-----~~~~I~~~d~dG~~  279 (386)
T 3v65_B          264 DA-----KHHVIERANLDGSH  279 (386)
T ss_dssp             ET-----TTTEEEEECTTSCS
T ss_pred             EC-----CCCEEEEEeCCCCe
Confidence            75     36678888887753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.94  E-value=0.0052  Score=55.26  Aligned_cols=178  Identities=10%  Similarity=0.019  Sum_probs=110.2

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC----CceeeeecC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG----THEGLVPLR   80 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g----~~~~~v~l~   80 (321)
                      ..|+..++..   ........-+ .....+.|++.+..|++.-     .      ....|+.++.++    .....+.-.
T Consensus        10 ~~I~~i~~~~---~~~~~~~~~~-~~p~g~~~d~~~~~ly~~D-----~------~~~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A           10 HEVRKMTLDR---SEYTSLIPNL-RNVVALDTEVASNRIYWSD-----L------SQRMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             SSEEEEETTS---CCCEEEECSC-SSEEEEEEETTTTEEEEEE-----T------TTTEEEEEEC--------CEEEECS
T ss_pred             CeEEEEECCC---cceEehhcCC-CceEEEEEEeCCCEEEEEE-----C------CCCcEEEEECCCCCCCcccEEEEeC
Confidence            3566667665   3333222222 2456789999888877741     1      123477777765    211222111


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      .......+++++.+..|.++. ...+.|.++|+.+.....+   .....+.++..|.+..|..+..++ .+.|+.++++.
T Consensus        75 ~~~~p~glavd~~~~~ly~~d-~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-~~~I~~~~~dG  152 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNG  152 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-SCEEEEEETTS
T ss_pred             CCCCcCEEEEeecCCeEEEEE-CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC-CCeEEEEcCCC
Confidence            223457899998777777763 3456899999987655444   334567899999888887776321 36899999853


Q ss_pred             CeEEEee--eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          158 GKQLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       158 ~~~i~~~--~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      .......  .......++|+|++..|..+.+     ..+.|..++++|.
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~-----~~~~I~~~d~dg~  196 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDS-----KLHSISSIDVNGG  196 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSC
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEEC-----CCCeEEEEecCCC
Confidence            3222111  1236778999999888888775     3667888888774

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.90  E-value=0.0017  Score=58.93  Aligned_cols=99  Identities=6%  Similarity=-0.031  Sum_probs=66.2

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCC---C---------ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK---C---------RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~---~---------~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      .+..++|+|||+.|.+... ....+..++..   .         ..+..+ +......++++++|+++++..   ..+.|
T Consensus       196 ~~~gia~s~dg~~ly~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~---~~~~V  271 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPM-HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL---AHSAI  271 (343)
T ss_dssp             CEEEEEECTTSCEEEEEES-SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG---GGTEE
T ss_pred             ccceeEeccCCCEEEEEeC-CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc---CCCeE
Confidence            3688999999998888632 22366666531   1         011222 233556799999998777765   56899


Q ss_pred             EEEECCCCeEEEeeeC---CCeeeEEEccCCCEEEEEEc
Q 020756          151 AFWDYVDGKQLGTTRA---ECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       151 ~iwD~~~~~~i~~~~~---~~~~~~~wSpdG~~l~t~~s  186 (321)
                      .+||..+++.......   .....++++++|+++++...
T Consensus       272 ~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          272 GVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             EEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             EEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence            9999966654333322   25788999999998777763

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.90  E-value=0.0016  Score=58.41  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----C---CcCeeeEEEcC-CCCeEEEEccC-----------
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----G---SGPYNTVRWNP-KGKFLCLAGFG-----------  144 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~---~~~~~~~~~sP-dG~~l~~~g~~-----------  144 (321)
                      ..+.+++++++..|.++  +....+..+|..+..+..+    .   ....+.+.+.| +|++.++....           
T Consensus        81 ~p~gi~~~~~~g~l~v~--d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIV--DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEEEEE--ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcEEEE--ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            57889999833345554  2334688888875544333    1   13467899999 99876664311           


Q ss_pred             ---CCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          145 ---NLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       145 ---n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                         ...+.|+.||..+++....... .....++|+|||++|..+.+     ..+.|.+|++.+
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~-----~~~~I~~~~~~~  216 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEF-----LSHQIVKYWLEG  216 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEG-----GGTEEEEEESSS
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeC-----CCCeEEEEECCC
Confidence               1247899999987754332222 35567999999998877764     367899998875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.88  E-value=0.0012  Score=58.14  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=100.5

Q ss_pred             cceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeCCcCeeeEEEcCCCCe
Q 020756           60 GESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF  137 (321)
Q Consensus        60 g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~  137 (321)
                      |...|..++...+ ....+.++.  ........++|+.|.++ .-.++.+.+||.+ .+.+.++.-.. .....++||+.
T Consensus        63 g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~l-tw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~  138 (262)
T 3nol_A           63 GRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGL-TWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQY  138 (262)
T ss_dssp             TEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSC
T ss_pred             CCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEE-EeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCE
Confidence            5567888887544 344455543  33333344567777776 3457799999985 45666663221 22344468888


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEeeeC-------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  209 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~  209 (321)
                      |+.+.   ..+.|.++|..+++.+..+.-       ..+..++|. +|+.++..-      .++.|.+.|. +|+.+...
T Consensus       139 L~~Sd---Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w------~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          139 LIMSD---GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW------QTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEECC---SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET------TSSEEEEECTTTCBEEEEE
T ss_pred             EEEEC---CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc------cCCeEEEEECCCCcEEEEE
Confidence            88876   457899999999887766543       134457887 786443332      3778888887 56554333


Q ss_pred             cc--------------CceEEEEEecCCCCCCCCc
Q 020756          210 MF--------------DKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       210 ~~--------------~~~~~~~w~P~~~~~~~~~  230 (321)
                      ..              +.+..++|.|+...+|-..
T Consensus       209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            22              2567899999988888664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.0015  Score=61.82  Aligned_cols=152  Identities=13%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             ceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc---CCCe
Q 020756           32 VQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF---MPAS  107 (321)
Q Consensus        32 ~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~---~~~~  107 (321)
                      ..|.|+| ++..|++.-     .      + ..|+.++..+.....+. ........++|+++|+.|.++...   ....
T Consensus       140 ~~lavdp~~~g~Lyv~d-----~------~-~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVG-----E------Q-HPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPN  206 (430)
T ss_dssp             CEEEEETTEEEEEEEEE-----B------T-EEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred             CEEEECCCCCCeEEEEe-----C------C-CcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence            4667777 355554431     1      1 35777887775333332 234567899999999977776321   1113


Q ss_pred             EEEEeCCCcee--EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC---CCeeeEEEccCCCEE
Q 020756          108 ATIFNKKCRPI--LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWSPDGRYF  181 (321)
Q Consensus       108 i~i~d~~~~~~--~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~---~~~~~~~wSpdG~~l  181 (321)
                      +.+++..+...  ..+ .....+.++++|++..|.++..  ..+.|+.+|...+........   .....++|+|+|++|
T Consensus       207 v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~--~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          207 NYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSW--NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             EEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEET--TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             EEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            55555544322  233 2345577899994444555543  347899999987754222222   246779999999977


Q ss_pred             EEEEcCCceeecCcEEEEeecC
Q 020756          182 MTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ..+..     ..+.|..+++++
T Consensus       285 yv~d~-----~~~~I~~~~~d~  301 (430)
T 3tc9_A          285 YIVVV-----NQHYILRSDYDW  301 (430)
T ss_dssp             EEEET-----TTTEEEEEEEET
T ss_pred             EEEEC-----CCCEEEEEeCCc
Confidence            77765     377889988875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.79  E-value=0.00024  Score=67.30  Aligned_cols=114  Identities=9%  Similarity=0.020  Sum_probs=80.9

Q ss_pred             CcCCCEEEEEEccC-C--CeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccC-------CCCCcEEEEECCC
Q 020756           91 SYSGSEFAVVYGFM-P--ASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFG-------NLPGDMAFWDYVD  157 (321)
Q Consensus        91 sP~g~~l~~~~g~~-~--~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~-------n~~g~i~iwD~~~  157 (321)
                      .|+++.+++..... .  +.+.++|.... .+.++  +..+  .+.+||||++|+++...       ..++.|.++|..+
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            36888877764321 1  68999999654 45555  5556  79999999999887531       1246899999999


Q ss_pred             CeEEEeeeC---------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEec
Q 020756          158 GKQLGTTRA---------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKM  210 (321)
Q Consensus       158 ~~~i~~~~~---------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~  210 (321)
                      ++.+..+.-         .....+.+||||++++.+...    .++.|.+.|... +.+....
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeEEEEEE
Confidence            988877642         245678999999999988731    157899999854 4443333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.71  E-value=0.018  Score=53.57  Aligned_cols=158  Identities=11%  Similarity=0.040  Sum_probs=102.0

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc----eeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~----~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      ....|.|++.+..|++.     |.      ....|+.++.++..    ...+..........+++.+.+..|.++. ...
T Consensus       113 ~~~~l~~d~~~~~lyws-----D~------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d-~~~  180 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWS-----DL------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVL  180 (400)
T ss_dssp             CEEEEEEETTTTEEEEE-----ET------TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE-TTT
T ss_pred             cceEEeeeeccCceEEE-----ec------CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE-CCC
Confidence            45677888877777663     11      12236677766521    1222212334567899998777777763 345


Q ss_pred             CeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCE
Q 020756          106 ASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~  180 (321)
                      +.|.++++++.....+   .....+.|+..|.+.+|..+..+ ..+.|+..+++..........  .....+++++++..
T Consensus       181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~  259 (400)
T 3p5b_L          181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  259 (400)
T ss_dssp             TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCE
Confidence            6899999987755554   33446789999988888887633 236899999864432222222  36778999999888


Q ss_pred             EEEEEcCCceeecCcEEEEeecCce
Q 020756          181 FMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      |..+-+     ..+.|..++++|..
T Consensus       260 lY~aD~-----~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          260 LYWVDS-----KLHSISSIDVNGGN  279 (400)
T ss_dssp             EEEEET-----TTTEEEEEETTSCC
T ss_pred             EEEEEC-----CCCEEEEEeCCCCc
Confidence            888875     36778888887753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.69  E-value=0.0051  Score=54.29  Aligned_cols=157  Identities=11%  Similarity=-0.054  Sum_probs=96.8

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecC-C
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR-K   81 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~-~   81 (321)
                      .++|+++++.+   ++.+.+..+-. .........+|+.|.++.-           .+..++.++.... ....++.. .
T Consensus        43 ~s~v~~iD~~t---g~v~~~i~l~~-~~fgeGi~~~g~~lyv~t~-----------~~~~v~viD~~t~~v~~~i~~g~~  107 (266)
T 2iwa_A           43 RSSVRQVALQT---GKVENIHKMDD-SYFGEGLTLLNEKLYQVVW-----------LKNIGFIYDRRTLSNIKNFTHQMK  107 (266)
T ss_dssp             TCEEEEEETTT---CCEEEEEECCT-TCCEEEEEEETTEEEEEET-----------TCSEEEEEETTTTEEEEEEECCSS
T ss_pred             CCEEEEEECCC---CCEEEEEecCC-CcceEEEEEeCCEEEEEEe-----------cCCEEEEEECCCCcEEEEEECCCC
Confidence            46888888888   67666655322 1111122223566665521           2234667776543 22334433 2


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CC-----cCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GS-----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~-----~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      +    ....++||+.+++..  ..+.+.++|..+. .+..+  +.     ...|.+.|. +|+..+...   ..+.|.+.
T Consensus       108 ~----g~glt~Dg~~l~vs~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~---~~~~V~vI  177 (266)
T 2iwa_A          108 D----GWGLATDGKILYGSD--GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW---QTDCIARI  177 (266)
T ss_dssp             S----CCEEEECSSSEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET---TSSEEEEE
T ss_pred             C----eEEEEECCCEEEEEC--CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC---CCCeEEEE
Confidence            2    234667898888763  4679999998653 44444  21     136788898 775444443   45799999


Q ss_pred             ECCCCeEEEeeeCC---------------CeeeEEEccCCCEEEEEE
Q 020756          154 DYVDGKQLGTTRAE---------------CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       154 D~~~~~~i~~~~~~---------------~~~~~~wSpdG~~l~t~~  185 (321)
                      |..+++.+..+.-.               ....++|+|+|+.|..+.
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            99999888877642               336799999987776666

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.64  E-value=0.016  Score=50.76  Aligned_cols=177  Identities=8%  Similarity=0.092  Sum_probs=111.4

Q ss_pred             CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      .+...+.|+|++..|.++..           ....|+.++..+.....+++........+++.++|.++++  ...+..+
T Consensus        27 ~~lSGla~~~~~~~L~aV~d-----------~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs--~E~~~~l   93 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTIN-----------KPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVIS--DERDYAI   93 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEE-----------TTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEE--ETTTTEE
T ss_pred             cCcceeEEeCCCCEEEEEEC-----------CCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEE--ECCCCcE
Confidence            45678999999887777632           1334889999887777777765567889999988864443  2345788


Q ss_pred             EEEeCCCce----eE--Ee------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC-CCeEEEee---------eC
Q 020756          109 TIFNKKCRP----IL--EL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTT---------RA  166 (321)
Q Consensus       109 ~i~d~~~~~----~~--~~------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~-~~~~i~~~---------~~  166 (321)
                      .+|++....    +.  .+      .+.....++|+|+++.|.++.-.. ...|+.|+-. ....+..+         ..
T Consensus        94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred             EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhcccccc
Confidence            898763221    11  11      123356899999997777765211 1256666511 11111111         11


Q ss_pred             CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc-----------CceEEEEEecCCC
Q 020756          167 ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-----------DKLFQAEWKPVSP  224 (321)
Q Consensus       167 ~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~-----------~~~~~~~w~P~~~  224 (321)
                      .....+++.|...+|+.-+.     ..+.+.++|.+|+.+.....           ..--.+++.|++.
T Consensus       173 ~d~S~l~~dp~tg~lliLS~-----~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSH-----ESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEET-----TTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             CCceeEEEcCCCCeEEEEEC-----CCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            25677999997555555554     47788999999986633221           2446788888775

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.62  E-value=0.0022  Score=57.75  Aligned_cols=150  Identities=6%  Similarity=-0.005  Sum_probs=96.2

Q ss_pred             EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC
Q 020756           34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  113 (321)
Q Consensus        34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~  113 (321)
                      ..|+++|++|++...   .++     +...||.++++|....++.-.   .+  ..|+|+|+.|..... ....|...++
T Consensus       109 ~~~s~~g~~Iy~~~~---~~~-----~~~~Iy~~~~dGs~~~~lt~~---~~--~~~~~~g~~iy~t~~-g~~~Iy~~~l  174 (302)
T 3s25_A          109 IYASLIGNYIYYLHY---DTQ-----TATSLYRIRIDGEEKKKIKNH---YL--FTCNTSDRYFYYNNP-KNGQLYRYDT  174 (302)
T ss_dssp             EEEEEETTEEEEEEE---SSS-----SCEEEEEEETTSCCCEEEESS---CC--CCSEEETTEEEEECT-TTCCEEEEET
T ss_pred             cEEEEeCCEEEEEee---cCC-----CCceEEEEECCCCCeEEEeCC---Cc--eEeeEECCEEEEEeC-CCceEEEEEC
Confidence            478999999988521   111     445699999998765555422   22  457889999888633 3457888888


Q ss_pred             CCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeec
Q 020756          114 KCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  193 (321)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d  193 (321)
                      .+.....+..+..... ++|+|++|+.....+ ...|+.-+++...... +....+  ..|+|+|++|..+...    ..
T Consensus       175 ~g~~~~~l~~~~~~~~-~~P~g~~iy~t~~~~-~~~I~~~~ldG~~~~~-Lt~~~~--~~~~~~g~~Iy~~~~~----~~  245 (302)
T 3s25_A          175 ASQSEALFYDCNCYKP-VVLDDTNVYYMDVNR-DNAIVHVNINNPNPVV-LTEANI--EHYNVYGSLIFYQRGG----DN  245 (302)
T ss_dssp             TTTEEEEEECSCEEEE-EEEETTEEEEEEGGG-TTEEEEECSSSCCCEE-CSCSCE--EEEEEETTEEEEEECS----SS
T ss_pred             CCCCEEEEeCCCccce-eeecCCEEEEEEcCC-CcEEEEEECCCCCeEE-EeCCCc--ceEEECCCEEEEEECC----CC
Confidence            7765555533444443 569999999976321 2578888887554222 222233  4599999999887632    13


Q ss_pred             CcEEEEeecCcee
Q 020756          194 NGIKIFHHNGSLF  206 (321)
Q Consensus       194 ~~v~iw~~~g~~l  206 (321)
                      ..|..-+++|...
T Consensus       246 ~~i~~~~~DG~~r  258 (302)
T 3s25_A          246 PALCVVKNDGTGF  258 (302)
T ss_dssp             CEEEEEETTSCCC
T ss_pred             cEEEEEECCCCcc
Confidence            4566666677543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.61  E-value=0.013  Score=52.91  Aligned_cols=157  Identities=9%  Similarity=-0.018  Sum_probs=103.2

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      ..+.+.|.+.+..|++.     |.      ....|+.++.++.... .+....-.....+++.+.+..|.++. ...+.|
T Consensus        36 ~~~~ld~d~~~~~lyw~-----D~------~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d-~~~~~I  103 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWS-----DV------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-SETNRI  103 (318)
T ss_dssp             EEEEEEEEGGGTEEEEE-----ET------TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEE-TTTTEE
T ss_pred             ccEEEEEEeCCCEEEEE-----EC------CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEE-CCCCEE
Confidence            45678899988887764     11      1234777777776321 11111223456789988777777763 345689


Q ss_pred             EEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEE
Q 020756          109 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMT  183 (321)
Q Consensus       109 ~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t  183 (321)
                      .++++++.....+   ....-+.+++.|.+.+|..+..+ ..+.|+..+++.........  -.....++|+|++..|..
T Consensus       104 ~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~  182 (318)
T 3sov_A          104 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW  182 (318)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEE
Confidence            9999987655444   23456789999988888777632 24789999986332211111  235678999999888888


Q ss_pred             EEcCCceeecCcEEEEeecCc
Q 020756          184 ATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      +-+     ..+.|..++++|.
T Consensus       183 aD~-----~~~~I~~~d~dG~  198 (318)
T 3sov_A          183 ADA-----KLNFIHKSNLDGT  198 (318)
T ss_dssp             EET-----TTTEEEEEETTSC
T ss_pred             EEC-----CCCEEEEEcCCCC
Confidence            875     3677888888774

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.56  E-value=0.0045  Score=53.83  Aligned_cols=157  Identities=10%  Similarity=0.067  Sum_probs=99.4

Q ss_pred             cceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeCCcCeeeEEEcCCCCe
Q 020756           60 GESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF  137 (321)
Q Consensus        60 g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~  137 (321)
                      |...|..++...+ ....+.+..  ........++++.|.++ .-..+.+.+||.+ .+.+.++.... ......+||+.
T Consensus        41 g~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~l-tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~  116 (243)
T 3mbr_X           41 GRSSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQL-TWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSH  116 (243)
T ss_dssp             TSCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEE-ESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSC
T ss_pred             CCceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEE-EeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCE
Confidence            5566888887544 334455443  33333344456777776 3457799999985 45666663211 12333467888


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEeeeC-------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  209 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~  209 (321)
                      |..+.   ..+.|.++|..+.+.+..++-       ..+..++|. +|+.++..-      .++.|.+.|. +|+.+...
T Consensus       117 L~vSd---gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw------~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          117 LYMSD---GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW------LTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             EEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET------TTTEEEEECTTTCBEEEEE
T ss_pred             EEEEC---CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC------CCCeEEEEECCCCCEEEEE
Confidence            87776   467999999999877766543       245567777 777443332      3677888887 55544222


Q ss_pred             c---------------cCceEEEEEecCCCCCCCCc
Q 020756          210 M---------------FDKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       210 ~---------------~~~~~~~~w~P~~~~~~~~~  230 (321)
                      .               .+.+..++|.|+...+|-..
T Consensus       187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            1               13567899999988888664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.55  E-value=0.016  Score=51.49  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=87.2

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  110 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i  110 (321)
                      ...+.|+++|+ |++. .  .        ....|+.++..+.....+..  .+..+.++++++|+.++...+.....+..
T Consensus        34 pegia~~~~g~-lyv~-d--~--------~~~~I~~~d~~g~~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           34 LENLASAPDGT-IFVT-N--H--------EVGEIVSITPDGNQQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEECTTSC-EEEE-E--T--------TTTEEEEECTTCCEEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cceEEECCCCC-EEEE-e--C--------CCCeEEEECCCCceEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            45789999987 4443 1  1        12247788777754443332  35688999999999544432222235777


Q ss_pred             EeCCCceeEEe---CC-cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe-EEEee---------eC--CCeeeEEE
Q 020756          111 FNKKCRPILEL---GS-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTT---------RA--ECSVTSEW  174 (321)
Q Consensus       111 ~d~~~~~~~~~---~~-~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-~i~~~---------~~--~~~~~~~w  174 (321)
                      +|.....+..+   .. ...+.+...+++..++...   ..+.|+++|..+++ .+...         ..  .....+  
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~---~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS---YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET---TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC---CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            77644333332   22 2234455555554444433   46899999987653 22110         01  123345  


Q ss_pred             ccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          175 SPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +|||++|..+.+     ..+.|..+++++
T Consensus       175 s~dg~~lyv~d~-----~~~~I~~~~~~~  198 (306)
T 2p4o_A          175 KRFGNFLYVSNT-----EKMLLLRIPVDS  198 (306)
T ss_dssp             EEETTEEEEEET-----TTTEEEEEEBCT
T ss_pred             CcCCCEEEEEeC-----CCCEEEEEEeCC
Confidence            899998888776     377899999864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.54  E-value=0.011  Score=51.96  Aligned_cols=162  Identities=16%  Similarity=0.103  Sum_probs=98.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR   80 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~   80 (321)
                      |.-+.|+++++.+   ++.+.+. + ......-.-.++|+.|.+++-           .+..++.++.... ....++..
T Consensus        72 G~~g~v~~iD~~T---gkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw-----------~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           72 GHQGTLRQLSLES---AQPVWME-R-LGNIFAEGLASDGERLYQLTW-----------TEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             TTTTEEEECCSSC---SSCSEEE-E-CTTCCEEEEEECSSCEEEEES-----------SSCEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCC---CcEEeEE-C-CCCcceeEEEEeCCEEEEEEc-----------cCCEEEEEECCcCcEEEEEeCC
Confidence            5567788888888   6777666 3 222222112345667766521           1234667776443 23344443


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe----C---CcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL----G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~----~---~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      .++    ...++||+.|++..  ...+|.++|..+ +.+.++    +   -...|.+.|. +|+..+..-   ....|.+
T Consensus       136 ~eG----wGLt~Dg~~L~vSd--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw---~s~~I~v  205 (268)
T 3nok_A          136 GEG----WGLCYWNGKLVRSD--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW---HSSDVLE  205 (268)
T ss_dssp             SCC----CCEEEETTEEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET---TCSEEEE
T ss_pred             Cce----eEEecCCCEEEEEC--CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC---CCCeEEE
Confidence            332    23336788888863  367999999865 344444    1   1245788888 786444443   4569999


Q ss_pred             EECCCCeEEEeeeCC---------------CeeeEEEccC-CCEEEEEEcCCc
Q 020756          153 WDYVDGKQLGTTRAE---------------CSVTSEWSPD-GRYFMTATTAPR  189 (321)
Q Consensus       153 wD~~~~~~i~~~~~~---------------~~~~~~wSpd-G~~l~t~~s~~r  189 (321)
                      .|.++++.+..+...               ....|+|+|+ +++++|+-.+|+
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~  258 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR  258 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence            999999887776532               2355999997 555566665554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.52  E-value=0.027  Score=50.48  Aligned_cols=156  Identities=8%  Similarity=-0.064  Sum_probs=97.5

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC----ceeEE-e--CCcCeeeEEEcCCCC
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC----RPILE-L--GSGPYNTVRWNPKGK  136 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~----~~~~~-~--~~~~~~~~~~sPdG~  136 (321)
                      |..++..+.....+ +........+.|++.+..|.++. ...+.|..+++.+    ..... +  +......+++.+.++
T Consensus        12 I~~i~~~~~~~~~~-~~~~~~p~g~~~d~~~~~ly~~D-~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           12 VRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             EEEEETTSCCCEEE-ECSCSSEEEEEEETTTTEEEEEE-TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             EEEEECCCcceEeh-hcCCCceEEEEEEeCCCEEEEEE-CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            66777766432222 23445678999999888887763 3456899999876    22222 2  223457889998777


Q ss_pred             eEEEEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE---ecc
Q 020756          137 FLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMF  211 (321)
Q Consensus       137 ~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~---~~~  211 (321)
                      .|..+..  ..+.|.++|++.........  ......++.+|++.+|..+...    ..+.|...+.+|.....   ...
T Consensus        90 ~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~----~~~~I~~~~~dG~~~~~~~~~~~  163 (316)
T 1ijq_A           90 NIYWTDS--VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTENI  163 (316)
T ss_dssp             EEEEEET--TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS----SSCEEEEEETTSCCEEEEECSSC
T ss_pred             eEEEEEC--CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC----CCCeEEEEcCCCCCeEEEEECCC
Confidence            7776653  45799999987543332232  2367789999987766666531    02567777777765422   234


Q ss_pred             CceEEEEEecCCCCCC
Q 020756          212 DKLFQAEWKPVSPDKF  227 (321)
Q Consensus       212 ~~~~~~~w~P~~~~~~  227 (321)
                      .....++|.|+...+|
T Consensus       164 ~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLY  179 (316)
T ss_dssp             SCEEEEEEETTTTEEE
T ss_pred             CCceEEEEeccCCEEE
Confidence            4566788888776665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.50  E-value=0.026  Score=52.27  Aligned_cols=135  Identities=5%  Similarity=-0.119  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC  139 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~  139 (321)
                      .|+.++.+|.....+.........+++++|.+..|.+......+.|..+++++.....+   +-..-+.|+|+|++..|.
T Consensus       182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY  261 (386)
T 3v65_B          182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMY  261 (386)
T ss_dssp             EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEE
T ss_pred             eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEE
Confidence            46666666654333322223456899999988877776433336899999987766555   233468899999998888


Q ss_pred             EEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe-ecCcee
Q 020756          140 LAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLF  206 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~-~~g~~l  206 (321)
                      .+..+  .+.|+.+|++.......+.  ......+++ ..+ .|..+..     ..+.|..++ .+|+.+
T Consensus       262 ~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~-~ly~td~-----~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          262 WVDAK--HHVIERANLDGSHRKAVISQGLPHPFAITV-FED-SLYWTDW-----HTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEETT--TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETT-EEEEEET-----TTTEEEEEETTTCCSC
T ss_pred             EEECC--CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECC-EEEEeeC-----CCCeEEEEECCCCcce
Confidence            88743  4789999986432222222  224556666 233 4444442     366777777 567655

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=0.031  Score=52.58  Aligned_cols=138  Identities=11%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP   84 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~   84 (321)
                      +.|+++++..   + .+....---.....+.|+++|+.|++.-..    .+.   ....++.+...+.......+.....
T Consensus       159 ~~I~~id~~~---~-~v~~~~~~~~~P~~ia~d~~G~~lyvad~~----~~~---~~~~v~~~~~~g~~~~~~~l~~~~~  227 (430)
T 3tc9_A          159 HPTRLIDFEK---E-YVSTVYSGLSKVRTICWTHEADSMIITNDQ----NNN---DRPNNYILTRESGFKVITELTKGQN  227 (430)
T ss_dssp             EEEEEEETTT---T-EEEEEECCCSCEEEEEECTTSSEEEEEECC----SCT---TSEEEEEEEGGGTSCSEEEEEECSS
T ss_pred             CcEEEEECCC---C-EEEEEecCCCCcceEEEeCCCCEEEEEeCC----CCc---ccceEEEEeCCCceeeeeeeccCCC
Confidence            4555565544   2 222222122346789999999987775210    011   1113455555554331111122334


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---C-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .++++++|++..|.++ ....++|..||..+.....+   . ...-+.++|+|+|++|.++..  ..+.|..+|.+
T Consensus       228 p~giavdp~~g~lyv~-d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~--~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNGAETHPINGELYFN-SWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV--NQHYILRSDYD  300 (430)
T ss_dssp             CCCEEECTTTCCEEEE-ETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEE-ECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC--CCCEEEEEeCC
Confidence            5788999944444444 23456899999976544222   2 234568999999997777663  34789998765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.48  E-value=0.013  Score=51.55  Aligned_cols=156  Identities=8%  Similarity=0.076  Sum_probs=93.8

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEG   83 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~   83 (321)
                      ++|+++++.+   ++.+.+..+-. ......-.++|+.|.+++-           .+..++.++.... ....++...++
T Consensus        65 S~v~~vD~~T---gkv~~~~~l~~-~~FgeGit~~g~~ly~ltw-----------~~~~v~v~D~~t~~~~~ti~~~~eG  129 (262)
T 3nol_A           65 SSIRKVDIES---GKTLQQIELGK-RYFGEGISDWKDKIVGLTW-----------KNGLGFVWNIRNLRQVRSFNYDGEG  129 (262)
T ss_dssp             EEEEEECTTT---CCEEEEEECCT-TCCEEEEEEETTEEEEEES-----------SSSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ceEEEEECCC---CcEEEEEecCC-ccceeEEEEeCCEEEEEEe-----------eCCEEEEEECccCcEEEEEECCCCc
Confidence            4788888888   67666665432 2111112334666665521           1223566666432 23344443322


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--C--C---cCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--G--S---GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~--~---~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                          ...++||+.|++..  ...+|.++|..+ +.+.++  .  .   ...|.+.|. +|+..+..-   ....|.+.|.
T Consensus       130 ----~glt~dg~~L~~Sd--Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w---~~~~I~vIDp  199 (262)
T 3nol_A          130 ----WGLTHNDQYLIMSD--GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW---QTNKIVRIDP  199 (262)
T ss_dssp             ----CCEEECSSCEEECC--SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET---TSSEEEEECT
T ss_pred             ----eEEecCCCEEEEEC--CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc---cCCeEEEEEC
Confidence                33446788888853  356899999864 444444  1  1   345678887 776444443   4579999999


Q ss_pred             CCCeEEEeeeCC--------------CeeeEEEccCCCEEEEEE
Q 020756          156 VDGKQLGTTRAE--------------CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       156 ~~~~~i~~~~~~--------------~~~~~~wSpdG~~l~t~~  185 (321)
                      ++++.+..+...              ....++|+|+++.|..++
T Consensus       200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            999988777642              235599999866555555

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.46  E-value=0.062  Score=48.89  Aligned_cols=136  Identities=6%  Similarity=-0.108  Sum_probs=86.2

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC---CcCeeeEEEcCCCCeE
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFL  138 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~---~~~~~~~~~sPdG~~l  138 (321)
                      ..|+.++.+|.....+....-....+++++|.+..+.+......+.|..+++++.....+.   -..-+.++++|++..|
T Consensus       138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~l  217 (349)
T 3v64_C          138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRM  217 (349)
T ss_dssp             TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEE
T ss_pred             CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEE
Confidence            3577777777643333222334568999999887777764332378999999887666652   3346789999999988


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe-ecCcee
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLF  206 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~-~~g~~l  206 (321)
                      ..+..+  .+.|+.+|++.......+.  ......++. ..+ +|..+..     ..+.|..++ .+|+.+
T Consensus       218 Y~aD~~--~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~-~ly~td~-----~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          218 YWVDAK--HHVIERANLDGSHRKAVISQGLPHPFAITV-FED-SLYWTDW-----HTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEEETT--TTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETT-EEEEEET-----TTTEEEEEETTTCCSC
T ss_pred             EEEECC--CCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECC-EEEEecC-----CCCeEEEEEccCCCcc
Confidence            888743  4789999987432222221  224555666 233 4444443     266677777 567654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.44  E-value=0.011  Score=52.88  Aligned_cols=119  Identities=11%  Similarity=0.079  Sum_probs=75.1

Q ss_pred             CeEEEEECc-CCCEEEEEEc---------------cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCC
Q 020756           84 PVHDVQWSY-SGSEFAVVYG---------------FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        84 ~v~~~~wsP-~g~~l~~~~g---------------~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                      ..+++++.| +|+.++.-.+               ...+.+..||..+..+..+  .....+.++|+|+|++|.++..  
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~--  204 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEF--  204 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEG--
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeC--
Confidence            478999999 9975554211               1125788888865544333  2244577999999998877753  


Q ss_pred             CCCcEEEEECCCC-----eEEEeeeCCCeeeEEEccCCCEEEEEEcCCce-----eecCcEEEEeecCceeE
Q 020756          146 LPGDMAFWDYVDG-----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRL-----QIDNGIKIFHHNGSLFF  207 (321)
Q Consensus       146 ~~g~i~iwD~~~~-----~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl-----~~d~~v~iw~~~g~~l~  207 (321)
                      ..+.|.+||+...     +.+....  ....++++++|+++++... .|.     ...+.|..++.+|+.+.
T Consensus       205 ~~~~I~~~~~~~~~~~~~~~~~~~~--gP~gi~~d~~G~l~va~~~-~~~~~~~~~~~~~v~~~d~~G~~~~  273 (322)
T 2fp8_A          205 LSHQIVKYWLEGPKKGTAEVLVKIP--NPGNIKRNADGHFWVSSSE-ELDGNMHGRVDPKGIKFDEFGNILE  273 (322)
T ss_dssp             GGTEEEEEESSSTTTTCEEEEEECS--SEEEEEECTTSCEEEEEEE-ETTSSTTSCEEEEEEEECTTSCEEE
T ss_pred             CCCeEEEEECCCCcCCccceEEeCC--CCCCeEECCCCCEEEEecC-cccccccCCCccEEEEECCCCCEEE
Confidence            3478999998742     2222222  2667899999986666542 000     01355777777777663

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.43  E-value=0.057  Score=47.79  Aligned_cols=132  Identities=8%  Similarity=-0.049  Sum_probs=79.9

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe-----------CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~-----------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      ...++..+++ .+.+. ....+.|.++|....  .+...           .....+.+  +|+|++|.++..  ..+.|+
T Consensus       119 ~~g~~~~~~~-~~~v~-d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~--~~~~I~  192 (306)
T 2p4o_A          119 LNGITPLSDT-QYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT--EKMLLL  192 (306)
T ss_dssp             EEEEEESSSS-EEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET--TTTEEE
T ss_pred             cCcccccCCC-cEEEE-ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC--CCCEEE
Confidence            3455545544 34443 334568888887642  22211           11234456  899998888764  347999


Q ss_pred             EEECCC-CeE--EEee-eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeE--Eec--cCceEEEEEe---
Q 020756          152 FWDYVD-GKQ--LGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF--KKM--FDKLFQAEWK---  220 (321)
Q Consensus       152 iwD~~~-~~~--i~~~-~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~--~~~--~~~~~~~~w~---  220 (321)
                      .+|++. ++.  ...+ .......++++++|+++++..      ..+.|.+++.+|++..  ...  ......++|.   
T Consensus       193 ~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~------~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~  266 (306)
T 2p4o_A          193 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH------IYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE  266 (306)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB------TTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred             EEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeC------CCCeEEEECCCCCEEEEeecccccCCceEEEEeccc
Confidence            999874 321  1111 112456689999998655554      3678999998887642  222  2467888887   


Q ss_pred             cCCCCCCC
Q 020756          221 PVSPDKFG  228 (321)
Q Consensus       221 P~~~~~~~  228 (321)
                      |+...+|-
T Consensus       267 ~d~~~LyV  274 (306)
T 2p4o_A          267 GDCTAIYV  274 (306)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCEEEE
Confidence            77666663

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.40  E-value=0.00055  Score=63.51  Aligned_cols=90  Identities=7%  Similarity=-0.086  Sum_probs=67.2

Q ss_pred             eEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccC-------CCCCcEEEEECCCCeEEEeeeCC---------
Q 020756          107 SATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFG-------NLPGDMAFWDYVDGKQLGTTRAE---------  167 (321)
Q Consensus       107 ~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~-------n~~g~i~iwD~~~~~~i~~~~~~---------  167 (321)
                      ++.++|... +.+.++  +..+  .+.+||||++|.++..+       ..++.|.+||+.+++.+.++.-+         
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            788999865 455555  5556  79999999999988521       23578999999999988887532         


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEE--Eeec
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI--FHHN  202 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~i--w~~~  202 (321)
                      ....+.+||||++++.+...    ..+.+.+  +|..
T Consensus       125 ~P~~ia~SpDGk~lyVan~~----~~~~v~V~~iD~~  157 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFG----SSAAAGLSVPGAS  157 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECS----SSCEEEEEETTTE
T ss_pred             CcceEEEcCCCCEEEEEccC----CCCeEEEEEEchh
Confidence            46679999999999988731    1345666  7663

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.35  E-value=0.018  Score=57.62  Aligned_cols=57  Identities=18%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             CcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEec
Q 020756          148 GDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  210 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~  210 (321)
                      |.|..||+.+++.+-.+... ......++.+|.++++++      .|+.+++||. +|+.+....
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~------~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT------ADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC------CCCcEEEEECCCCceeeeee
Confidence            78999999999887666543 344456778888888876      4999999998 688875543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.26  E-value=0.0078  Score=52.77  Aligned_cols=135  Identities=13%  Similarity=0.130  Sum_probs=90.3

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ..+..++|+|+++.|.++. +.++.|..+|..++.+..+   +......|++.++|+++++.-   .++.+.++++....
T Consensus        27 ~~lSGla~~~~~~~L~aV~-d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E---~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTI-NKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDE---RDYAIYVISLTPNS  102 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEE-ETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEET---TTTEEEEEEECTTC
T ss_pred             cCcceeEEeCCCCEEEEEE-CCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEEC---CCCcEEEEEcCCCC
Confidence            4689999999888777664 4477899999987777766   345778899999998766654   55789999876442


Q ss_pred             ---EEEeeeC-----C---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc----ee--EE-------eccCceE
Q 020756          160 ---QLGTTRA-----E---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LF--FK-------KMFDKLF  215 (321)
Q Consensus       160 ---~i~~~~~-----~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~----~l--~~-------~~~~~~~  215 (321)
                         .+....-     .   ..-.++|+|++..|.++.-      .....||.++|-    .+  ..       .....+.
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E------~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE------KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE------SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC------cCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence               2222221     1   2356999999977777662      344567777542    11  11       1223567


Q ss_pred             EEEEecCCCCCC
Q 020756          216 QAEWKPVSPDKF  227 (321)
Q Consensus       216 ~~~w~P~~~~~~  227 (321)
                      .++++|....++
T Consensus       177 ~l~~dp~tg~ll  188 (255)
T 3qqz_A          177 GAEFNQQKNTLL  188 (255)
T ss_dssp             EEEEETTTTEEE
T ss_pred             eEEEcCCCCeEE
Confidence            888888765554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.26  E-value=0.0021  Score=64.63  Aligned_cols=157  Identities=11%  Similarity=0.028  Sum_probs=95.5

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC---ceeeeecC-CCCCeEEEEECcCCCEEEEEEccCC
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT---HEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~---~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      ....+.|++.+..|++.     |..      ...|+.++.++.   ......+. .......+++.+.+..|.++ ....
T Consensus       407 ~p~gla~d~~~~~Ly~s-----D~~------~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~t-D~~~  474 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWS-----DLS------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT-DSVL  474 (699)
T ss_dssp             TCCCCEEETTTTEEEEC-----CTT------TTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEEC-CTTT
T ss_pred             ceEEEccccccCeEEEE-----ecC------CCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEE-eccC
Confidence            34567888877777663     211      123666666651   11111111 11234578888766666664 3345


Q ss_pred             CeEEEEeCCCceeEEeC---CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCCE
Q 020756          106 ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~~~~~~~~---~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~~  180 (321)
                      +.|.++++.+..+..+.   ....+.+++.|.+.+|..+..+ ..+.|++++++...  .+..........++|+|++.+
T Consensus       475 ~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~  553 (699)
T 1n7d_A          475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  553 (699)
T ss_dssp             SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCC
T ss_pred             CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCE
Confidence            68999999887666552   2445789999988887776532 23689888875332  221111224567999999877


Q ss_pred             EEEEEcCCceeecCcEEEEeecCc
Q 020756          181 FMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      |..+-+     ..+.|..++++|.
T Consensus       554 LY~aD~-----~~~~I~~~d~dG~  572 (699)
T 1n7d_A          554 LYWVDS-----KLHSISSIDVNGG  572 (699)
T ss_dssp             EEEEET-----TTTEEEEECSSSS
T ss_pred             EEEEec-----CCCeEEEEccCCC
Confidence            777775     3667888888774

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.25  E-value=0.097  Score=53.24  Aligned_cols=136  Identities=9%  Similarity=0.008  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCc---eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCC
Q 020756           63 KLNYLTTDGTH---EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKG  135 (321)
Q Consensus        63 ~l~~l~~~g~~---~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG  135 (321)
                      .|+.+.+++..   .....+. .......+++.+.++.|.++. ...+.|.++++++.....+   .......|++.|.+
T Consensus       447 ~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD-~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~  525 (791)
T 3m0c_C          447 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH  525 (791)
T ss_dssp             EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred             eEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEe-cCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC
Confidence            36666666531   1111112 234556899998888888763 3456999999988766555   33456789999998


Q ss_pred             CeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          136 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       136 ~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      .+|..+..++ .+.|++.+++.......+..  .....|++++++..|..+-.     ..+.|...+++|..
T Consensus       526 g~LYwtD~g~-~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-----~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          526 GFMYWTDWGT-PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-----KLHSISSIDVNGGN  591 (791)
T ss_dssp             TEEEEEECSS-SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCS
T ss_pred             CCEEEecCCC-CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC-----CCCcEEEEecCCCc
Confidence            8888876432 36899999965443333332  26778999988887777764     25667777776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.011  Score=56.77  Aligned_cols=155  Identities=12%  Similarity=0.125  Sum_probs=92.5

Q ss_pred             cceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-ecCC--CCCeEEEEE-------CcCCCEEEE
Q 020756           31 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRK--EGPVHDVQW-------SYSGSEFAV   99 (321)
Q Consensus        31 ~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-~l~~--~~~v~~~~w-------sP~g~~l~~   99 (321)
                      ..-|.+.| ++..|+++..           +...|..|+..+.....+ ....  .....+++|       +++|+.|++
T Consensus       141 p~~la~dp~~~~~Lyv~~~-----------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyv  209 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYD-----------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIV  209 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEE-----------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred             CCEEEEccCCCCEEEEEEC-----------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEE
Confidence            34667777 3555555421           123477787766433322 2211  224789999       999996666


Q ss_pred             EEccC-----CCeEEEEeCCC--cee-----EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC-------CCe
Q 020756          100 VYGFM-----PASATIFNKKC--RPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-------DGK  159 (321)
Q Consensus       100 ~~g~~-----~~~i~i~d~~~--~~~-----~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~-------~~~  159 (321)
                      .....     ...+.+++...  ...     ..+ .-...+.++.+|++.+|.++..  ..+.|+.+|++       ++.
T Consensus       210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~--~~g~V~r~d~~~~~~~~~tg~  287 (496)
T 3kya_A          210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY--EKGQVFRLDLVDYFKTIKNGG  287 (496)
T ss_dssp             EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET--TTTEEEEECHHHHHHHHHTTC
T ss_pred             EeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC--CCCEEEEEecccccccccCce
Confidence            53221     12466775432  111     122 1234567889998777777764  34789999987       443


Q ss_pred             E--------------EEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          160 Q--------------LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       160 ~--------------i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      .              +..... .....++|+|+|++|..+-+     ..+.|+.+++++
T Consensus       288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~-----~~h~I~kid~dg  341 (496)
T 3kya_A          288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI-----NNHYFMRSDYDE  341 (496)
T ss_dssp             CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET-----TTTEEEEEEEET
T ss_pred             eecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC-----CCCEEEEEecCC
Confidence            2              222222 24678999999997777665     367788877765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.13  E-value=0.013  Score=51.48  Aligned_cols=152  Identities=9%  Similarity=-0.063  Sum_probs=94.0

Q ss_pred             EEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeCCcCeeeEEEcCCCCeEEEE
Q 020756           64 LNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLA  141 (321)
Q Consensus        64 l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~l~~~  141 (321)
                      |..++...+ ....+ ++.  ........++|+.|.++ .-.++.+.+||.+ .+.+.++.-.. ......+||+.|+.+
T Consensus        77 v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~Ly~l-tw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vS  151 (268)
T 3nok_A           77 LRQLSLESAQPVWME-RLG--NIFAEGLASDGERLYQL-TWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRS  151 (268)
T ss_dssp             EEECCSSCSSCSEEE-ECT--TCCEEEEEECSSCEEEE-ESSSCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEE
T ss_pred             EEEEECCCCcEEeEE-CCC--CcceeEEEEeCCEEEEE-EccCCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEE
Confidence            566665433 22333 443  22222234456666665 3457799999985 45666662211 112333678888887


Q ss_pred             ccCCCCCcEEEEECCCCeEEEeeeCC-------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEecc--
Q 020756          142 GFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--  211 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~~~~i~~~~~~-------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~--  211 (321)
                      .   ..+.|.++|..+++.+..+.-.       .+..++|. +|+.++..-      .++.|.+-|. +|+.+.....  
T Consensus       152 d---Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw------~s~~I~vIDp~TG~V~~~Idl~~  221 (268)
T 3nok_A          152 D---GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW------HSSDVLEIDPATGTVVGVIDASA  221 (268)
T ss_dssp             C---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET------TCSEEEEECTTTCBEEEEEECHH
T ss_pred             C---CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC------CCCeEEEEeCCCCcEEEEEECCC
Confidence            6   4689999999999877665431       44567888 886443332      3678888887 5555433221  


Q ss_pred             -------------CceEEEEEecCCCCCCCCc
Q 020756          212 -------------DKLFQAEWKPVSPDKFGDI  230 (321)
Q Consensus       212 -------------~~~~~~~w~P~~~~~~~~~  230 (321)
                                   +.+..++|.|+...+|-..
T Consensus       222 L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          222 LTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             HHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence                         3567899999988888664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.12  E-value=0.045  Score=51.58  Aligned_cols=151  Identities=13%  Similarity=0.151  Sum_probs=87.0

Q ss_pred             cceEEeCCC--CCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc-c-C-C
Q 020756           31 TVQLNWNRG--STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG-F-M-P  105 (321)
Q Consensus        31 ~~~~~Wsp~--G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g-~-~-~  105 (321)
                      ...+.|+|+  +..|++.   |..         ..|+.++..+.....+ .......++++|+++|+ |.++.. . . .
T Consensus       141 P~gvavd~~s~~g~Lyv~---D~~---------~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~  206 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWV---GQR---------DAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTN  206 (433)
T ss_dssp             CCEEEECTTTTTCEEEEE---CBT---------SCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTS
T ss_pred             CceEEEccccCCCEEEEE---eCC---------CCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCccc
Confidence            447788885  4444443   111         3477887744422222 23445688999999999 555421 1 1 1


Q ss_pred             CeEEEEeCCCcee--EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee-eC---CCeeeEEEccCC
Q 020756          106 ASATIFNKKCRPI--LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RA---ECSVTSEWSPDG  178 (321)
Q Consensus       106 ~~i~i~d~~~~~~--~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~-~~---~~~~~~~wSpdG  178 (321)
                      ..+..++..+...  ..+ .....+.++++|++..|.++..  ..+.|+.+|..++..+..+ ..   .....++|+|+|
T Consensus       207 ~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~--~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          207 TGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRY--HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             EEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBT--TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred             ceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEEC--CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence            1244444322211  122 2334567899994444555543  4478999999877652222 21   133469999999


Q ss_pred             CEEEEEEcCCceeecCcEEEEeec
Q 020756          179 RYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       179 ~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++|..+..     ..+.|+.++++
T Consensus       285 ~~LYvad~-----~~~~I~~~~~d  303 (433)
T 4hw6_A          285 DWAYIIYN-----GKHCIYRVDYN  303 (433)
T ss_dssp             SEEEEEET-----TTTEEEEEEBC
T ss_pred             CEEEEEeC-----CCCEEEEEeCC
Confidence            97777765     36778888875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.07  E-value=0.00016  Score=66.82  Aligned_cols=176  Identities=11%  Similarity=0.004  Sum_probs=78.5

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeeeecCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRKE   82 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v~l~~~   82 (321)
                      .+.|..|+..+   ++.+.+...  ..........+|..+++. .           ....|+.++.. |...-.......
T Consensus        18 dg~v~a~d~~t---G~~~W~~~~--~~~~s~p~~~~g~~~v~~-s-----------~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A           18 DGSLHAVSKRT---GSIKWTLKE--DPVLQVPTHVEEPAFLPD-P-----------NDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             TSEEEEEETTT---CCEEEEEEC--CCSCCCC-----CCEEEC-T-----------TTCCEEEC-----CCSEECSCCHH
T ss_pred             CCEEEEEECCC---CCEEEEecC--CCceecceEcCCCEEEEe-C-----------CCCEEEEEECCCCceeeeeeccCc
Confidence            56788899888   777777665  233233334455443321 0           12236666663 321111111100


Q ss_pred             CCeE-EEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVH-DVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~-~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..+. ..... ++..+++  +..++.+..||.+ ++.+..+....  ...++|++..|++++   .++.|+.||.++++.
T Consensus        81 ~~~~~sp~~~-~~~~v~~--g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~---~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYM--GKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGR---TEYTITMYDTKTREL  152 (369)
T ss_dssp             HHHTTCSCC------CCC--CEEEEEEEEECCC------------------------EEEEE---EEEEEECCCSSSSSC
T ss_pred             cccccCceEe-cCCEEEE--EeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEe---cCCEEEEEECCCCCE
Confidence            0000 00111 2334443  4556789999986 44544442211  345678899998887   778999999999876


Q ss_pred             EEeeeCCCeeeEEEccCC---CEEEEEEcCCceeecCcEEEEee-cCceeEEec
Q 020756          161 LGTTRAECSVTSEWSPDG---RYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  210 (321)
Q Consensus       161 i~~~~~~~~~~~~wSpdG---~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~  210 (321)
                      +-.+.........++.++   ..+++++.      ++.+..||. +|+.+.+..
T Consensus       153 ~W~~~~~~~~~~~~~~~~~~~~~v~~~~~------dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          153 RWNATYFDYAASLPEDDVDYKMSHFVSNG------DGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCEEEEEEECCBCCCCCTTCCCCEEEEET------SCEEEEECTTTCCEEEEEE
T ss_pred             EEeEecccccCccccCCccccceEEEECC------CCEEEEEECCCCcEEEEec
Confidence            544432222223344432   34555553      888999998 677775443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.06  E-value=0.1  Score=48.43  Aligned_cols=158  Identities=8%  Similarity=-0.065  Sum_probs=99.1

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEe---CCcCeeeEEEcCC
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILEL---GSGPYNTVRWNPK  134 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~---~~~~~~~~~~sPd  134 (321)
                      ..|..++.++.....+ +.....+..++|++.+..|.++. ...+.|..+++.+.    ....+   .......+++.+.
T Consensus        92 ~~I~~i~l~~~~~~~~-~~~~~~~~~l~~d~~~~~lywsD-~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~  169 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  169 (400)
T ss_dssp             TEEEEECTTSCSCEEE-ECSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred             ceeEEEccCCcceeEe-ccccCcceEEeeeeccCceEEEe-cCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence            3466777766533322 34456788999999888777763 34568888888652    12222   3345677899987


Q ss_pred             CCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE---e
Q 020756          135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---K  209 (321)
Q Consensus       135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~---~  209 (321)
                      ++.|..+..  ..+.|.+.|++.......+..  .....++.+|.+.+|..+...    ....|...+.+|.....   .
T Consensus       170 ~~~lY~~d~--~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~----~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          170 HSNIYWTDS--VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             TTEEEEEET--TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS----SSCCEEEEETTSCSCEEEECS
T ss_pred             CCceEEEEC--CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC----CCCEEEEEeCCCCccEEEEEC
Confidence            777777663  347899999976543333332  257789999977777665521    13567777777754322   2


Q ss_pred             ccCceEEEEEecCCCCCC
Q 020756          210 MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       210 ~~~~~~~~~w~P~~~~~~  227 (321)
                      .......+++.|+...+|
T Consensus       244 ~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             SCSCEEEEEEETTTTEEE
T ss_pred             CCCceEEEEEEeCCCEEE
Confidence            334566778887766665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.06  E-value=0.14  Score=48.23  Aligned_cols=160  Identities=9%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ....+.|+++|+ |++.. ..    +..  ....++.+...+.......+.......+++++|++..|.++ ....+.|.
T Consensus       183 ~P~giavd~dG~-lyVad-~~----~~~--~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~-d~~~~~V~  253 (433)
T 4hw6_A          183 QCADVNFTLNGD-MVVVD-DQ----SSD--TNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYT-RYHHAMIS  253 (433)
T ss_dssp             CEEEEEECTTCC-EEEEE-CC----SCT--TSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEEC-BTTCSEEE
T ss_pred             CccEEEECCCCC-EEEEc-CC----CCc--ccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEE-ECCCCEEE
Confidence            466889999999 55532 11    100  11224444443332211111123345678999944444443 23456899


Q ss_pred             EEeCCCcee-EEe---CC-cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC--CCe-----EEEee-e-----------
Q 020756          110 IFNKKCRPI-LEL---GS-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK-----QLGTT-R-----------  165 (321)
Q Consensus       110 i~d~~~~~~-~~~---~~-~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~--~~~-----~i~~~-~-----------  165 (321)
                      .+|.....+ ..+   +. .....++|+|+|++|.++..  ..+.|..+|++  ++.     .+.-. .           
T Consensus       254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~--~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  331 (433)
T 4hw6_A          254 SYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN--GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG  331 (433)
T ss_dssp             EECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET--TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred             EEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC--CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence            999863322 222   22 22346999999997777763  34789998865  232     11110 0           


Q ss_pred             --CCCeeeEEE---------ccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          166 --AECSVTSEW---------SPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       166 --~~~~~~~~w---------SpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                        -.....+++         .++|.++++-.      ..+.|+.++.+|...
T Consensus       332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~------~n~~I~~~~~~G~v~  377 (433)
T 4hw6_A          332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR------DSHTVRVLTPEGRVT  377 (433)
T ss_dssp             SBCSSEEEEEEEECGGGTTSSCCEEEEEEET------TTTEEEEECTTSEEE
T ss_pred             eEEcCCccEEEEccccccccCCCCcEEEEEC------CCCEEEEECCCCCEE
Confidence              013455888         67777655544      367788888777544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.05  E-value=0.11  Score=45.11  Aligned_cols=156  Identities=12%  Similarity=0.048  Sum_probs=92.8

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEG   83 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~   83 (321)
                      ++|+++++.+   ++.+.+..+-.. .....-...|+.|.+++-           .+..++.++.... ....++...++
T Consensus        43 S~v~~vD~~t---gkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw-----------~~~~v~v~D~~tl~~~~ti~~~~~G  107 (243)
T 3mbr_X           43 SSVRKVDLET---GRILQRAEVPPP-YFGAGIVAWRDRLIQLTW-----------RNHEGFVYDLATLTPRARFRYPGEG  107 (243)
T ss_dssp             CEEEEEETTT---CCEEEEEECCTT-CCEEEEEEETTEEEEEES-----------SSSEEEEEETTTTEEEEEEECSSCC
T ss_pred             ceEEEEECCC---CCEEEEEeCCCC-cceeEEEEeCCEEEEEEe-----------eCCEEEEEECCcCcEEEEEeCCCCc
Confidence            5899999988   677766654321 111111223566666521           1233666776443 23344443332


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--C-----CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  155 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~-----~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~  155 (321)
                          ....++++.|.+..  ...+|.++|..+ +.+.++  .     -...|.+.|. +|+..+..-   ....|.+.|.
T Consensus       108 ----wglt~dg~~L~vSd--gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw---~s~~I~vIDp  177 (243)
T 3mbr_X          108 ----WALTSDDSHLYMSD--GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW---LTSRIARIDP  177 (243)
T ss_dssp             ----CEEEECSSCEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET---TTTEEEEECT
T ss_pred             ----eEEeeCCCEEEEEC--CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC---CCCeEEEEEC
Confidence                23346788888763  367999999865 344444  1     1356788887 676554443   3569999999


Q ss_pred             CCCeEEEeeeCC---------------CeeeEEEccCCCEEEEEE
Q 020756          156 VDGKQLGTTRAE---------------CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       156 ~~~~~i~~~~~~---------------~~~~~~wSpdG~~l~t~~  185 (321)
                      ++++.+..+...               ....++|+|+++.|..++
T Consensus       178 ~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          178 ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            999888776522               234599999755555444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.98  E-value=0.24  Score=48.89  Aligned_cols=157  Identities=8%  Similarity=-0.025  Sum_probs=103.6

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  109 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~  109 (321)
                      ....+.|.+.+..|++.   |.        ....|+.++.+|.....+..........++.++.+..|.++. ...+.|.
T Consensus        38 ~~~~l~~d~~~~~lywt---D~--------~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD-~~~~~I~  105 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWT---DI--------SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWAD-TGTNRIE  105 (628)
T ss_dssp             CEEEEEEETTTTEEEEE---ET--------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE-TTTTEEE
T ss_pred             ceEEEEEECCCCEEEEE---EC--------CCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEE-CCCCEEE
Confidence            45577888887777664   11        223477778777533333212224567888988888887763 3456899


Q ss_pred             EEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEE
Q 020756          110 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       110 i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~  185 (321)
                      +.++++.....+   ....-+.++..|...+|..+..+ ..+.|+..+++.......... .....++++++++.|..+-
T Consensus       106 v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          106 VSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEE
Confidence            999987655444   23445789999977777777643 247899998864432222222 3677899999988888877


Q ss_pred             cCCceeecCcEEEEeecCc
Q 020756          186 TAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       186 s~~rl~~d~~v~iw~~~g~  204 (321)
                      .     ..+.|..++++|.
T Consensus       185 ~-----~~~~I~~~d~dG~  198 (628)
T 4a0p_A          185 L-----DTNLIESSNMLGL  198 (628)
T ss_dssp             T-----TTTEEEEEETTSC
T ss_pred             C-----CCCEEEEEcCCCC
Confidence            5     3667888888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.94  E-value=0.048  Score=48.02  Aligned_cols=127  Identities=15%  Similarity=0.126  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~  140 (321)
                      .|+.++..|...-... .....+.++...++|..++   +..++.+..||..+..+..+  ....+.++...++|.+.+.
T Consensus       118 ~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v---gt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~  193 (330)
T 3hxj_A          118 HLYAINTDGTEKWRFK-TKKAIYATPIVSEDGTIYV---GSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFG  193 (330)
T ss_dssp             EEEEECTTSCEEEEEE-CSSCCCSCCEECTTSCEEE---ECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred             EEEEEcCCCCEEEEEc-CCCceeeeeEEcCCCEEEE---EcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEE
Confidence            4777776633221222 1233456667777777443   35567899999886555444  4556777888888875543


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeE
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  207 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~  207 (321)
                      +      +.|..+| .+++.+-.....  .+..+..+++|...+ ++.      ++++..++.+|..+.
T Consensus       194 t------~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~------~~gl~~~~~~g~~~~  248 (330)
T 3hxj_A          194 S------DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSL------DGHLYAINPDGTEKW  248 (330)
T ss_dssp             S------SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EET------TTEEEEECTTSCEEE
T ss_pred             e------CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcC------CCeEEEECCCCCEeE
Confidence            3      6799999 677665544432  567788889987554 442      678888887777663

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.83  E-value=0.017  Score=52.95  Aligned_cols=143  Identities=11%  Similarity=0.101  Sum_probs=83.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-----CCcCeeeEEEcCC---CCeEEEEccC-CCC----Cc
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPK---GKFLCLAGFG-NLP----GD  149 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-----~~~~~~~~~~sPd---G~~l~~~g~~-n~~----g~  149 (321)
                      .-.+++|.|+|+.+++   ..+++|.++|..+. .+..+     +......++++|+   +..|.++... ..+    ..
T Consensus        30 ~P~~ia~~pdG~l~V~---e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT---ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTEEEEE---ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCeEEEE---eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4568999999984444   44589999986554 22222     2345788999998   5555554311 012    56


Q ss_pred             EEEEECCCC-------eEE-Eeee---CCCeeeEEEccCCCEEEEEEcCCce-------eecCcEEEEeecCc-------
Q 020756          150 MAFWDYVDG-------KQL-GTTR---AECSVTSEWSPDGRYFMTATTAPRL-------QIDNGIKIFHHNGS-------  204 (321)
Q Consensus       150 i~iwD~~~~-------~~i-~~~~---~~~~~~~~wSpdG~~l~t~~s~~rl-------~~d~~v~iw~~~g~-------  204 (321)
                      |..|+....       +.+ ..+.   .|....+.|+|||.++++.+..-..       ...+.|.-++.+|.       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            888887643       111 2222   2456679999999877765421000       01234555555664       


Q ss_pred             ---eeEEeccCceEEEEEecCCCCCCCC
Q 020756          205 ---LFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 ---~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                         .++.......+.++|.|+...+|..
T Consensus       187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          187 PNSPIWSYGHRNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             TTCCEEEECCSCCCEEEECTTTCCEEEE
T ss_pred             CCCcEEEEccCCcceEEEeCCCCCEEEE
Confidence               3444444566788999965556643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.81  E-value=0.29  Score=44.70  Aligned_cols=182  Identities=12%  Similarity=0.143  Sum_probs=102.5

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEE--eCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-----
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-----   77 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~--Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-----   77 (321)
                      +-+.||++ +   ++.+..........+++.  +.-.|+.+-+...++.+.-.    ....+|.++........+     
T Consensus        50 ~gL~Vydl-~---G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~----n~l~vf~iDp~~~~l~~i~~~~~  121 (355)
T 3amr_A           50 SGLVVYSL-D---GKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK----NTIEIYAIDGKNGTLQSMTDPDH  121 (355)
T ss_dssp             TEEEEEET-T---SCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTC----CEEEEEEECTTTCCEEECSCTTS
T ss_pred             CCEEEEcC-C---CcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCC----CeEEEEEECCCCCceeecccccc
Confidence            56888888 5   677766654333344443  33345542222112211001    112244444222222222     


Q ss_pred             ecCCC-CCeEEEEE--CcC-CCEEEEEEccCCCeEEEEeCC--------CceeEEeC-CcCeeeEEEcCCCCeEEEEccC
Q 020756           78 PLRKE-GPVHDVQW--SYS-GSEFAVVYGFMPASATIFNKK--------CRPILELG-SGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        78 ~l~~~-~~v~~~~w--sP~-g~~l~~~~g~~~~~i~i~d~~--------~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                      ++... ..++.++.  +|. |+..+++. ..++.+..|++.        .+.+.+|. ......+...+....|.++-  
T Consensus       122 pv~t~~~~pyGlcly~~~~~g~~yafV~-~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~e--  198 (355)
T 3amr_A          122 PIATAINEVYGFTLYHSQKTGKYYAMVT-GKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAE--  198 (355)
T ss_dssp             CEECCCSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEE--
T ss_pred             CcCCCCCCeeEEEEEecCCCCcEEEEEE-CCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEec--
Confidence            11122 45667777  785 55455553 456888888761        23556662 45677888999888999987  


Q ss_pred             CCCCcEEEEECC-----CCeEEEeeeCC----CeeeEEE--ccCCC-EEEEEEcCCceeecCcEEEEeecC
Q 020756          145 NLPGDMAFWDYV-----DGKQLGTTRAE----CSVTSEW--SPDGR-YFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       145 n~~g~i~iwD~~-----~~~~i~~~~~~----~~~~~~w--SpdG~-~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                       .+..|+.+|.+     +++.+..+...    .+-.++.  .++|+ ||++++-     .++.+.+|+..+
T Consensus       199 -Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ-----G~~s~~Vydr~~  263 (355)
T 3amr_A          199 -EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ-----GNSSYAIYDRQG  263 (355)
T ss_dssp             -TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG-----GGTEEEEEESST
T ss_pred             -ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC-----CCCEEEEEECCC
Confidence             55568888865     35566555322    3444555  67888 6666663     478999999864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.80  E-value=0.17  Score=46.32  Aligned_cols=133  Identities=11%  Similarity=0.121  Sum_probs=81.6

Q ss_pred             eEEEEEcCCC--ceeeeecC------CCCCeEEEEECc--CCC-EEEEEE-ccCCCeEEEEeCC--Cc---eeEEeC---
Q 020756           63 KLNYLTTDGT--HEGLVPLR------KEGPVHDVQWSY--SGS-EFAVVY-GFMPASATIFNKK--CR---PILELG---  122 (321)
Q Consensus        63 ~l~~l~~~g~--~~~~v~l~------~~~~v~~~~wsP--~g~-~l~~~~-g~~~~~i~i~d~~--~~---~~~~~~---  122 (321)
                      .|+.++.+..  ....+.+.      .....+.+...+  +|. +|+++. +.....+.+|+++  +.   .+.++.   
T Consensus        84 ~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~  163 (355)
T 3sre_A           84 KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL  163 (355)
T ss_dssp             EEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT
T ss_pred             eEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCC
Confidence            4788887632  22222221      123677888766  465 455542 3234578888763  22   223342   


Q ss_pred             CcCeeeEEEcCCCCeEEEEcc--C------------CCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcC
Q 020756          123 SGPYNTVRWNPKGKFLCLAGF--G------------NLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTA  187 (321)
Q Consensus       123 ~~~~~~~~~sPdG~~l~~~g~--~------------n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~  187 (321)
                      -...|.+...|+|++.+....  .            ...|.|+.+|...-+.+  ... .....++|||||++|..+.+ 
T Consensus       164 ~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~--~~~l~~pNGia~spDg~~lYvadt-  240 (355)
T 3sre_A          164 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV--AEGFDFANGINISPDGKYVYIAEL-  240 (355)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE--EEEESSEEEEEECTTSSEEEEEEG-
T ss_pred             CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe--ecCCcccCcceECCCCCEEEEEeC-
Confidence            345789999999998887541  1            12367777776422222  222 36677999999999999887 


Q ss_pred             CceeecCcEEEEeec
Q 020756          188 PRLQIDNGIKIFHHN  202 (321)
Q Consensus       188 ~rl~~d~~v~iw~~~  202 (321)
                          ..+.|..|+++
T Consensus       241 ----~~~~I~~~~~~  251 (355)
T 3sre_A          241 ----LAHKIHVYEKH  251 (355)
T ss_dssp             ----GGTEEEEEEEC
T ss_pred             ----CCCeEEEEEEC
Confidence                47788999985

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.80  E-value=0.00029  Score=65.05  Aligned_cols=128  Identities=14%  Similarity=0.103  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeCC--c-Ce-eeEEEcCCCCe
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGS--G-PY-NTVRWNPKGKF  137 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~~--~-~~-~~~~~sPdG~~  137 (321)
                      .|+.++...+. ....+.. +++.+..+..+|..+++  +..++.+..||.+ ++.+..+..  . .+ .+.... ++..
T Consensus        20 ~v~a~d~~tG~-~~W~~~~-~~~~s~p~~~~g~~~v~--~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~   94 (369)
T 2hz6_A           20 SLHAVSKRTGS-IKWTLKE-DPVLQVPTHVEEPAFLP--DPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGI   94 (369)
T ss_dssp             EEEEEETTTCC-EEEEEEC-CCSCCCC-----CCEEE--CTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------
T ss_pred             EEEEEECCCCC-EEEEecC-CCceecceEcCCCEEEE--eCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCE
Confidence            36666654332 2222222 44444445566765555  4678899999984 444444411  1 11 111111 3445


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      |++++   .++.|+.||.++|+.+-.+..+.  ...++|++..|++++.      ++.++.||. +|+.+
T Consensus        95 v~~g~---~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~------dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           95 LYMGK---KQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRT------EYTITMYDTKTRELR  153 (369)
T ss_dssp             CCCCE---EEEEEEEECCC------------------------EEEEEE------EEEEECCCSSSSSCC
T ss_pred             EEEEe---CCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEec------CCEEEEEECCCCCEE
Confidence            55555   67899999999998876665543  2356778888888873      778888887 45544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.76  E-value=0.068  Score=48.85  Aligned_cols=142  Identities=11%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec----CCCCCeEEEEECcC---CCEEEEEEc
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYS---GSEFAVVYG  102 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l----~~~~~v~~~~wsP~---g~~l~~~~g  102 (321)
                      .-..|.|.|+|+ |++..     ..+       .|+.++.+|. +....+    ..++...+++++|+   +..|.+++.
T Consensus        30 ~P~~ia~~pdG~-l~V~e-----~~g-------~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTE-----RPG-------RLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             CEEEEEEEETTE-EEEEE-----TTT-------EEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCeEEEEcCCCe-EEEEe-----CCC-------EEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            456889999997 44431     112       3566655553 222211    12456899999998   666766543


Q ss_pred             c--CC----CeEEEEeCCCc--------eeEE-eC---CcCeeeEEEcCCCCeEEEEccC----------CCCCcEEEEE
Q 020756          103 F--MP----ASATIFNKKCR--------PILE-LG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWD  154 (321)
Q Consensus       103 ~--~~----~~i~i~d~~~~--------~~~~-~~---~~~~~~~~~sPdG~~l~~~g~~----------n~~g~i~iwD  154 (321)
                      .  .+    ..|..|+....        .+.. +.   ...-+.+.|.|||.+.++.|..          +..|.|..+|
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~  175 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVD  175 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence            2  12    46777776432        1111 21   2234679999999877765421          1236777777


Q ss_pred             CCCC---------eEEEeeeCCCeeeEEEcc-CCCEEEEEE
Q 020756          155 YVDG---------KQLGTTRAECSVTSEWSP-DGRYFMTAT  185 (321)
Q Consensus       155 ~~~~---------~~i~~~~~~~~~~~~wSp-dG~~l~t~~  185 (321)
                      .+..         ..+...-..+...++|+| +|+++++-.
T Consensus       176 ~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          176 EEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             TTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred             CCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEec
Confidence            6532         122222223677899999 677665544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.72  E-value=0.29  Score=48.30  Aligned_cols=158  Identities=9%  Similarity=-0.016  Sum_probs=102.3

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASA  108 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i  108 (321)
                      ....+.|++.+..|++.   |.        ....|+.+..+|.......+. .-.....+++++.+..|.++. ...+.|
T Consensus        41 ~~~~ld~~~~~~~ly~s---D~--------~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d-~~~~~I  108 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWS---DV--------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-SETNRI  108 (619)
T ss_dssp             CEEEEEEETTTTEEEEE---ET--------TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEE
T ss_pred             ceEEEEEEeCCCEEEEE---EC--------CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEe-CCCCEE
Confidence            35577888887777664   11        223467777777532121122 225678999999888887763 446799


Q ss_pred             EEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCCEEEE
Q 020756          109 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRYFMT  183 (321)
Q Consensus       109 ~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~~l~t  183 (321)
                      .+.++++.....+   .-..-+.|++.|.+.+|..+..++ .+.|+..+++...  .+..........+++++++..|..
T Consensus       109 ~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~-~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~  187 (619)
T 3s94_A          109 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE-VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW  187 (619)
T ss_dssp             EEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSS-SCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             EEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCC-CCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEE
Confidence            9999988765554   233456899999888888877442 4688888886432  222222236778999998888887


Q ss_pred             EEcCCceeecCcEEEEeecCce
Q 020756          184 ATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      +-.     ..+.|...+++|..
T Consensus       188 aD~-----~~~~I~~~~~dG~~  204 (619)
T 3s94_A          188 ADA-----KLNFIHKSNLDGTN  204 (619)
T ss_dssp             EET-----TTCCEEEESSSCCE
T ss_pred             EeC-----CCCeEEEecCCCCc
Confidence            775     36778888887753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.63  E-value=0.28  Score=48.91  Aligned_cols=72  Identities=11%  Similarity=0.148  Sum_probs=49.2

Q ss_pred             CCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC---ceEEEEEec
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD---KLFQAEWKP  221 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~---~~~~~~w~P  221 (321)
                      +|.|..||+.+++.+-.+..+ ......++..|.++++++      .|+.|+.||. +|+++.+....   .-.-+.|..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS------ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC------CCCcEEEEECCCCccceeeeCCCCcccCceEEEE
Confidence            377999999999887766554 233346777888888876      4999999997 68888544322   112345555


Q ss_pred             CCC
Q 020756          222 VSP  224 (321)
Q Consensus       222 ~~~  224 (321)
                      ++.
T Consensus       528 ~G~  530 (689)
T 1yiq_A          528 DGE  530 (689)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.59  E-value=0.048  Score=49.76  Aligned_cols=142  Identities=13%  Similarity=0.181  Sum_probs=81.2

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe-----CCcCeeeEEEcCC---CCeEEEEccCCCC---CcE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----GSGPYNTVRWNPK---GKFLCLAGFGNLP---GDM  150 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~-----~~~~~~~~~~sPd---G~~l~~~g~~n~~---g~i  150 (321)
                      .-.+++|.|+|+.+++   .+.+.|.+++ .+.  .+..+     +......++|+|+   +..|.++...+.+   ..|
T Consensus        32 ~P~~ia~~pdG~l~V~---e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA---ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEECTTSCEEEE---ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEcCCCeEEEE---eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4568999999985544   4458999998 443  22222     2456788999999   6666555421111   578


Q ss_pred             EEEECCCC-----eE-EEeee-----CCCeeeEEEccCCCEEEEEEcCCce-------eecCcEEEEeecCc--------
Q 020756          151 AFWDYVDG-----KQ-LGTTR-----AECSVTSEWSPDGRYFMTATTAPRL-------QIDNGIKIFHHNGS--------  204 (321)
Q Consensus       151 ~iwD~~~~-----~~-i~~~~-----~~~~~~~~wSpdG~~l~t~~s~~rl-------~~d~~v~iw~~~g~--------  204 (321)
                      ..++....     +. +..+.     .|....+.|+|||.++++.+..-..       ...+.|.-++.+|.        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            88887643     12 22233     1355679999999766664421000       01134555555552        


Q ss_pred             -------eeEEeccCceEEEEEecCCCCCCCC
Q 020756          205 -------LFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 -------~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                             .++.......+.++|.|+...+|..
T Consensus       188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~  219 (352)
T 2ism_A          188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSS  219 (352)
T ss_dssp             TCTTSCTTEEEECCSEECCCEECTTTCCEEEE
T ss_pred             CCCCCCccEEEEcCCCcccEEEECCCCCEEEE
Confidence                   1233333445667888855556643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.51  E-value=0.42  Score=42.76  Aligned_cols=136  Identities=6%  Similarity=-0.123  Sum_probs=84.9

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeE
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l  138 (321)
                      ..|..++.+|.....+.........+++.+|.+..|.+........|..+++++.....+   .-..-+.++|+|+++.|
T Consensus       101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~l  180 (318)
T 3sov_A          101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL  180 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEE
Confidence            357777777764333322333456899999987777776422346899999987665555   22345889999999888


Q ss_pred             EEEccCCCCCcEEEEECCCC--eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          139 CLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~--~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      ..+..  ..+.|+.+|++..  +.+..........++..  +..|..+..     ..+.|..++. +|+.+
T Consensus       181 Y~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~-----~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          181 YWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW-----STHSILACNKYTGEGL  242 (318)
T ss_dssp             EEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET-----TTTEEEEEETTTCCSC
T ss_pred             EEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec-----CCCeEEEEECCCCCce
Confidence            88874  3478999998643  22221111244556654  334444442     3667777776 56544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.51  E-value=0.27  Score=42.99  Aligned_cols=137  Identities=12%  Similarity=0.116  Sum_probs=84.1

Q ss_pred             CCceeecc--eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeE
Q 020756           54 TNQSYYGE--SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTV  129 (321)
Q Consensus        54 t~~s~~g~--~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~  129 (321)
                      .+..|.+.  ..|+.++..+.......+ ....+.++...++|..++.   .  +.+..||..+..+..+  +...+.++
T Consensus       147 ~g~l~vgt~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~d~~g~l~v~---t--~~l~~~d~~g~~~~~~~~~~~~~~~~  220 (330)
T 3hxj_A          147 DGTIYVGSNDNYLYAINPDGTEKWRFKT-NDAITSAASIGKDGTIYFG---S--DKVYAINPDGTEKWNFYAGYWTVTRP  220 (330)
T ss_dssp             TSCEEEECTTSEEEEECTTSCEEEEEEC-SSCCCSCCEECTTCCEEEE---S--SSEEEECTTSCEEEEECCSSCCCSCC
T ss_pred             CCEEEEEcCCCEEEEECCCCCEeEEEec-CCCceeeeEEcCCCEEEEE---e--CEEEEECCCCcEEEEEccCCcceece
Confidence            34444433  457777776432223332 2345667777778874443   3  6788999655555555  34567888


Q ss_pred             EEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeE
Q 020756          130 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  207 (321)
Q Consensus       130 ~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~  207 (321)
                      ...++|.+.+.+    .++.|..+|. +++.+..+...  ....+...++|+ |..++.      ++++..+|.+|+.+.
T Consensus       221 ~~~~~g~l~v~t----~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~------~ggl~~~d~~g~~~~  288 (330)
T 3hxj_A          221 AISEDGTIYVTS----LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSY------DGHLYAINPDGTEKW  288 (330)
T ss_dssp             EECTTSCEEEEE----TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECT------TCEEEEECTTSCEEE
T ss_pred             EECCCCeEEEEc----CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecC------CCCEEEECCCCcEEE
Confidence            899988665544    4578888885 55555444433  234456666776 445552      678999988777664


Q ss_pred             E
Q 020756          208 K  208 (321)
Q Consensus       208 ~  208 (321)
                      .
T Consensus       289 ~  289 (330)
T 3hxj_A          289 N  289 (330)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.49  E-value=0.3  Score=44.29  Aligned_cols=151  Identities=12%  Similarity=0.095  Sum_probs=94.1

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC-------CCCeEEEEE---CcCCCEEEEEEc
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-------EGPVHDVQW---SYSGSEFAVVYG  102 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~-------~~~v~~~~w---sP~g~~l~~~~g  102 (321)
                      .+.|.+....+++..         .|.|  .|+.++..++....+.+..       ...+..+.|   .|+|+.++++..
T Consensus        17 ~~~wd~~~g~~~vs~---------l~~g--~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSN---------LYKG--RIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             CEEEETTTTEEEEEE---------TTTT--EEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             CccCcCCCCEEEEEe---------ccCC--EEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            458988777776642         1222  3666666644333333322       113579999   799777776431


Q ss_pred             -----------cCCCeEEEEeCC----CceeEEeC-----C----------cCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756          103 -----------FMPASATIFNKK----CRPILELG-----S----------GPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus       103 -----------~~~~~i~i~d~~----~~~~~~~~-----~----------~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                                 ..+..+..||+.    ++.+....     .          ...+.+...++|+.-++.+++.  +.|..
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~--~~I~r  163 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM--PAIAR  163 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS--CEEEE
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC--CeEEE
Confidence                       024678899988    55544331     1          2488999999999988887431  67777


Q ss_pred             EECCCCeEEEee-eCC------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          153 WDYVDGKQLGTT-RAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       153 wD~~~~~~i~~~-~~~------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +|.+........ ...      ..+.++++|||..|+...+      .+.+..+|+.
T Consensus       164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~------~g~L~~fD~~  214 (334)
T 2p9w_A          164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG------PRALTAFDVS  214 (334)
T ss_dssp             ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS------SSSEEEEECS
T ss_pred             EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC------CCeEEEEcCC
Confidence            777533222111 111      3557999999999999885      5666666754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.42  E-value=0.98  Score=45.85  Aligned_cols=136  Identities=10%  Similarity=-0.087  Sum_probs=86.4

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC---CcCeeeEEEcCCCCeE
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFL  138 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~---~~~~~~~~~sPdG~~l  138 (321)
                      ..|+.++.+|.....+.........+++.+|.+..|.+..-.....|...++.+..+..+.   -..-+.|++.|.+..|
T Consensus       493 ~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~L  572 (791)
T 3m0c_C          493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL  572 (791)
T ss_dssp             TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeE
Confidence            3577778877644433323344578999999877777764333368999999887776662   3457789999988888


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeC----CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe-ecCcee
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLF  206 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~----~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~-~~g~~l  206 (321)
                      ..+..+  ...|+.+|++..........    .....++.  ++.+|..+..     ..+.|...+ ++|..+
T Consensus       573 YwaD~~--~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~-----~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          573 YWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI-----INEAIFSANRLTGSDV  636 (791)
T ss_dssp             EEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET-----TTTEEEEEETTTCCCC
T ss_pred             EEEeCC--CCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC-----CCCEEEEEeCCCCcce
Confidence            888643  37899999965433222222    13344554  4556666653     255666666 355433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.40  E-value=0.15  Score=46.38  Aligned_cols=142  Identities=11%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec----CCCCCeEEEEECcC---CCEEEEEEc
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYS---GSEFAVVYG  102 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l----~~~~~v~~~~wsP~---g~~l~~~~g  102 (321)
                      .-..|.|.|+|+ |++.   +  ..+       .|+.++ ++..+....+    ......+.++|+|+   +..|.+++.
T Consensus        32 ~P~~ia~~pdG~-l~V~---e--~~g-------~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIA---E--RPG-------RIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             CEEEEEECTTSC-EEEE---E--TTT-------EEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCCe-EEEE---e--CCC-------eEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            456899999998 4443   1  112       366666 4432222111    23457889999998   667777643


Q ss_pred             cC-C---CeEEEEeCCCc------eeEE-eC--C---cCeeeEEEcCCCCeEEEEccC----------CCCCcEEEEECC
Q 020756          103 FM-P---ASATIFNKKCR------PILE-LG--S---GPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWDYV  156 (321)
Q Consensus       103 ~~-~---~~i~i~d~~~~------~~~~-~~--~---~~~~~~~~sPdG~~l~~~g~~----------n~~g~i~iwD~~  156 (321)
                      .. +   ..|..|+....      .+.+ +.  .   ...+.+.|.|||.+.++.+..          +..|.|.-+|.+
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d  177 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPE  177 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTT
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCC
Confidence            21 1   46777876532      1222 32  1   234689999999766665421          123677777765


Q ss_pred             C--------------CeEEEeeeCCCeeeEEEcc-CCCEEEEEE
Q 020756          157 D--------------GKQLGTTRAECSVTSEWSP-DGRYFMTAT  185 (321)
Q Consensus       157 ~--------------~~~i~~~~~~~~~~~~wSp-dG~~l~t~~  185 (321)
                      .              ...+......+...++|+| +|+++++-.
T Consensus       178 G~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          178 GEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             SSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred             CCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence            3              1111111122566799999 677666544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.34  E-value=0.11  Score=47.26  Aligned_cols=144  Identities=10%  Similarity=0.115  Sum_probs=80.5

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee------cCCCCCeEEEEECcC---CCEEEEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGPVHDVQWSYS---GSEFAVV  100 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~------l~~~~~v~~~~wsP~---g~~l~~~  100 (321)
                      .-..|.|.|+|+.|++..     ..     |  .|+.++.++.....+.      ...++...+++|+|+   +..|.++
T Consensus        19 ~P~~i~~~pdG~~l~V~e-----~~-----G--~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITL-----RG-----G--ELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             SEEEEEECSTTCCEEEEE-----TT-----T--EEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             CcEEEEEcCCCCEEEEEe-----CC-----c--eEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            457899999999655531     11     2  3677766553221111      122456789999996   6666665


Q ss_pred             EccC------CCeEEEEeCCCc-----e---eEE-eC-----CcCeeeEEEcCCCCeEEEEccC----------CCCCcE
Q 020756          101 YGFM------PASATIFNKKCR-----P---ILE-LG-----SGPYNTVRWNPKGKFLCLAGFG----------NLPGDM  150 (321)
Q Consensus       101 ~g~~------~~~i~i~d~~~~-----~---~~~-~~-----~~~~~~~~~sPdG~~l~~~g~~----------n~~g~i  150 (321)
                      +...      ...|..|++...     .   +.+ +.     ...-+.+.|.|||.+.++.|..          +..|.|
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I  166 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKL  166 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEE
Confidence            4321      225666665321     1   111 11     1124579999999766665421          124678


Q ss_pred             EEEECCCC--------------eEEEeeeCCCeeeEEEcc-CCCEEEEEE
Q 020756          151 AFWDYVDG--------------KQLGTTRAECSVTSEWSP-DGRYFMTAT  185 (321)
Q Consensus       151 ~iwD~~~~--------------~~i~~~~~~~~~~~~wSp-dG~~l~t~~  185 (321)
                      .-+|.+..              ..+...-..+...++|+| +|+++++-.
T Consensus       167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence            88887532              112222222677799999 677665544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.31  E-value=0.33  Score=44.29  Aligned_cols=144  Identities=10%  Similarity=0.052  Sum_probs=81.3

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-ec-----CCCCCeEEEEECcC---CCEEEEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL-----RKEGPVHDVQWSYS---GSEFAVV  100 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-~l-----~~~~~v~~~~wsP~---g~~l~~~  100 (321)
                      .-..|.|.|+|+.++.-    . ..|       .|+.++..+.....+ .+     ..++...+++++|+   +..|.+.
T Consensus        33 ~P~~ia~~pdG~llVte----r-~~G-------~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSS----R-DEA-------TITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             SEEEEEECTTSCEEEEE----T-TTC-------EEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             CceEEEEcCCCcEEEEE----e-cCC-------EEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            45689999999844331    1 122       366776543222222 11     23567899999996   5566665


Q ss_pred             Ec-cCCCeEEEEeCCC-----------ceeE-EeC---CcCeeeEEEcCCCCeEEEEccC----------CCCCcEEEEE
Q 020756          101 YG-FMPASATIFNKKC-----------RPIL-ELG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWD  154 (321)
Q Consensus       101 ~g-~~~~~i~i~d~~~-----------~~~~-~~~---~~~~~~~~~sPdG~~l~~~g~~----------n~~g~i~iwD  154 (321)
                      +. .....|.-|.+..           +.+. .+.   ...-..|.|.|||.+.++.|..          +..|.|.-.|
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            43 2234566665532           1122 231   2334679999999877775521          1346777777


Q ss_pred             CCCC---------eEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756          155 YVDG---------KQLGTTRAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       155 ~~~~---------~~i~~~~~~~~~~~~wSpdG~~l~t~~  185 (321)
                      .+..         ..+...-..+...++|+|+|+++++-.
T Consensus       181 ~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred             CCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence            6522         122222222677899999998766544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.20  E-value=0.64  Score=41.53  Aligned_cols=146  Identities=11%  Similarity=0.157  Sum_probs=83.3

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEE
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~  140 (321)
                      ||.-...|..-..+.......++++.++|++..+++  +.......-.|-.+.....+   ....+..+.++|+|++++.
T Consensus       144 v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~--g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~  221 (327)
T 2xbg_A          144 IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAV--SSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI  221 (327)
T ss_dssp             EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEE--ETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEE--ECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE
Confidence            443333344444454455668999999999887765  33322333334323333333   3456778899999987766


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeee-----C-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEEec---
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTR-----A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKM---  210 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~-----~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~~~---  210 (321)
                      +    .+|.|++.+.+.++.-..+.     . ..+..+.+.+++..++.+.       ++.+ ++..++. .-....   
T Consensus       222 ~----~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-------~g~i-~~S~DgG~tW~~~~~~~  289 (327)
T 2xbg_A          222 V----NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-------AGAL-LCSQDGGQTWQQDVDVK  289 (327)
T ss_dssp             E----TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-------TTCE-EEESSTTSSCEECGGGT
T ss_pred             e----CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-------CCeE-EEeCCCCcccEEcCccC
Confidence            5    45777776543343322222     1 2467788999988777665       5555 3444433 222211   


Q ss_pred             --cCceEEEEEecCC
Q 020756          211 --FDKLFQAEWKPVS  223 (321)
Q Consensus       211 --~~~~~~~~w~P~~  223 (321)
                        ...++.+.|.++.
T Consensus       290 ~~~~~~~~v~~~~~~  304 (327)
T 2xbg_A          290 KVPSNFYKILFFSPD  304 (327)
T ss_dssp             TSSSCCCEEEEEETT
T ss_pred             CCCCCeEEEEEECCC
Confidence              2467888886443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.18  E-value=0.23  Score=46.97  Aligned_cols=144  Identities=10%  Similarity=0.142  Sum_probs=82.0

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeeeecC-------CCCCeEEEEECcC---CCEEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLR-------KEGPVHDVQWSYS---GSEFA   98 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v~l~-------~~~~v~~~~wsP~---g~~l~   98 (321)
                      ....|.|.|+|+.++.-      +.+      ..|+.++.. +.......+.       -++...+++|+|+   +..|.
T Consensus        28 ~P~~~a~~pdG~l~V~e------~~g------g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY   95 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTE------RAT------GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (454)
T ss_dssp             SEEEEEECTTSCEEEEE------TTT------CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             CceEEEEcCCCcEEEEE------cCC------CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence            45689999999844431      111      136777653 4333222222       2466789999997   67777


Q ss_pred             EEEccC-----------CCeEEEEeCCC--------ceeEE-eC---CcCeeeEEEcCCCCeEEEEccC-C---------
Q 020756           99 VVYGFM-----------PASATIFNKKC--------RPILE-LG---SGPYNTVRWNPKGKFLCLAGFG-N---------  145 (321)
Q Consensus        99 ~~~g~~-----------~~~i~i~d~~~--------~~~~~-~~---~~~~~~~~~sPdG~~l~~~g~~-n---------  145 (321)
                      +++...           ...|.-|+...        +.+.+ +.   ....+.+.|.|||.+.++.|.. +         
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccc
Confidence            765320           12455555421        12222 31   2346789999999977776532 1         


Q ss_pred             -------------------CCCcEEEEECCCC------------eEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756          146 -------------------LPGDMAFWDYVDG------------KQLGTTRAECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       146 -------------------~~g~i~iwD~~~~------------~~i~~~~~~~~~~~~wSpdG~~l~t~~  185 (321)
                                         ..|.|.-+|.+..            ..+...-..+...++|+|+|+++++-.
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~  246 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQ  246 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEE
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEec
Confidence                               1356666666432            012222122677899999998776655

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.17  E-value=0.37  Score=47.96  Aligned_cols=77  Identities=13%  Similarity=0.274  Sum_probs=55.6

Q ss_pred             CeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCE
Q 020756          106 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~  180 (321)
                      +.|..||+.+ +.+-.+ ...+.....++++|..|++++   .++.|++||.++++.+..+...   ...-+.|++||+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT---ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC---CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence            5788899864 444444 233445556777888888876   8899999999999999888754   3345788899986


Q ss_pred             EEEEE
Q 020756          181 FMTAT  185 (321)
Q Consensus       181 l~t~~  185 (321)
                      ++...
T Consensus       534 ~v~~~  538 (677)
T 1kb0_A          534 YVSVA  538 (677)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.15  E-value=0.73  Score=41.71  Aligned_cols=121  Identities=12%  Similarity=0.158  Sum_probs=80.4

Q ss_pred             ceEEe---CCCCCeeEEEEEe--cccCCCceeecceeEEEEEcC----CCceeeeecC------------CCCCeEEEEE
Q 020756           32 VQLNW---NRGSTGLLAVAQS--DVDKTNQSYYGESKLNYLTTD----GTHEGLVPLR------------KEGPVHDVQW   90 (321)
Q Consensus        32 ~~~~W---sp~G~~l~~~~~~--d~d~t~~s~~g~~~l~~l~~~----g~~~~~v~l~------------~~~~v~~~~w   90 (321)
                      ..+.|   -++|+.+++ +..  +.+..|..+.|...|+.++..    +.....+.|.            ......+++.
T Consensus        66 sGl~~~~~D~~grL~vv-~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           66 SGLSLLTHDNSKRLFAV-MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEESSSSSCCEEEEE-EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eEEEEeccCCCCcEEEE-EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            57899   588555554 332  234445545566678888877    4333333332            1135889999


Q ss_pred             CcCCCEEEEEEccCC-CeEEEEeCCCceeEEe--CC------cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           91 SYSGSEFAVVYGFMP-ASATIFNKKCRPILEL--GS------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        91 sP~g~~l~~~~g~~~-~~i~i~d~~~~~~~~~--~~------~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      .++|+..++-  ... +.|..++.++..+..+  ..      ...+-|.++|+|+.|++..   ..|.|.-+|+.+.
T Consensus       145 D~~GnaYVt~--s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~---~~g~L~~fD~~~p  216 (334)
T 2p9w_A          145 DRDGNSYVAF--ALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG---GPRALTAFDVSKP  216 (334)
T ss_dssp             CTTSCEEEEE--EESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES---SSSSEEEEECSSS
T ss_pred             CCCCCEEEeC--CCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc---CCCeEEEEcCCCC
Confidence            9999977763  334 6788888877644433  11      2356899999999999988   4789999998743

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.02  E-value=0.84  Score=45.03  Aligned_cols=138  Identities=9%  Similarity=-0.055  Sum_probs=90.3

Q ss_pred             eEEEEEcCCCceeeeecC------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcC
Q 020756           63 KLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNP  133 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~------~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sP  133 (321)
                      .|+.+..+|.....+...      ..+...++++...++.|.++. ...+.|.+.++++.....+   ....-..|+..|
T Consensus       363 ~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td-~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp  441 (628)
T 4a0p_A          363 MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC-EATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNP  441 (628)
T ss_dssp             EEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCEEEEEEECTTCCEEEEEEET
T ss_pred             eEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEc-CCCCEEEEEECCCCeEEEEEeCCCCceeeEEEec
Confidence            467777777543333222      234678999999988887763 4456899999988765554   345677899999


Q ss_pred             CCCeEEEEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      ...+|..+..++..+.|+..+++.........  -.....++.++++..|..+-+     ..+.|...+++|...
T Consensus       442 ~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~-----~~~~I~~~~~dG~~r  511 (628)
T 4a0p_A          442 EKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS-----DLRRIESSDLSGANR  511 (628)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSC
T ss_pred             CCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeC-----CCCEEEEEeCCCCce
Confidence            66677666533322268888886332222222  236778999999888887775     256788888877543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.00  E-value=1.1  Score=44.17  Aligned_cols=136  Identities=7%  Similarity=0.002  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC  139 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~  139 (321)
                      .|+.+..+|.....+....-+....+++.+.+..|.++. ...+.|.+.++++.....+   .-..-+.+++.|...+|.
T Consensus       372 ~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD-~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly  450 (619)
T 3s94_A          372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD-TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY  450 (619)
T ss_dssp             EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe-CCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence            477777777533333222234567889988777777763 4456899999987765555   234567899999866777


Q ss_pred             EEccCCCCCcEEEEECCCCeEEEeee--CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756          140 LAGFGNLPGDMAFWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~~~~i~~~~--~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      .+..++ .+.|+..+++.........  -.....++.++++..|..+-+     ..+.|..++++|..
T Consensus       451 ~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~-----~~~~I~~~~~dG~~  512 (619)
T 3s94_A          451 WTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA-----KTDKIEVMNTDGTG  512 (619)
T ss_dssp             EEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET-----TTTEEEEEESSSCC
T ss_pred             EecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEEC-----CCCEEEEEecCCCc
Confidence            776432 4678888875332222122  236778999998888887775     25667778887653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.95  E-value=0.12  Score=47.13  Aligned_cols=143  Identities=8%  Similarity=0.036  Sum_probs=80.4

Q ss_pred             CeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCcee---EEe------CCcCeeeEEEcCC---CCeEEEEccCC-C---
Q 020756           84 PVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRPI---LEL------GSGPYNTVRWNPK---GKFLCLAGFGN-L---  146 (321)
Q Consensus        84 ~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~~---~~~------~~~~~~~~~~sPd---G~~l~~~g~~n-~---  146 (321)
                      .-..++|.|+|+ .+++   .+.++|.+++..+...   ..+      +......++++|+   +..|.++.... .   
T Consensus        19 ~P~~i~~~pdG~~l~V~---e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT---LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTTCCEEEE---ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCCCEEEEE---eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            346899999999 5544   4568999998654321   111      2345678999996   55555542110 1   


Q ss_pred             -CCcEEEEECCCC-------eEE-Eeee-----CCCeeeEEEccCCCEEEEEEcCCc-------eeecCcEEEEeecCc-
Q 020756          147 -PGDMAFWDYVDG-------KQL-GTTR-----AECSVTSEWSPDGRYFMTATTAPR-------LQIDNGIKIFHHNGS-  204 (321)
Q Consensus       147 -~g~i~iwD~~~~-------~~i-~~~~-----~~~~~~~~wSpdG~~l~t~~s~~r-------l~~d~~v~iw~~~g~-  204 (321)
                       ...|..|++...       +.+ ..+.     .|....+.|+|||.++++.+..-.       ....+.|.-++.+|. 
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             235777776532       111 1121     234567999999966665542100       001134555555664 


Q ss_pred             --------------eeEEeccCceEEEEEecCCCCCCCC
Q 020756          205 --------------LFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 --------------~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                                    .++.......+.++|.|....+|..
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence                          1244444567889999955556543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.84  E-value=0.6  Score=46.51  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             CeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCE
Q 020756          106 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~  180 (321)
                      +.+..||+.+ +.+-.+ ...+.....++..|.+|++++   .++.|+.||.++|+.+-.+...   ...-+.|+.||+.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS---ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC---CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence            5688899964 444444 233344446677888888887   8999999999999999877654   2345788999986


Q ss_pred             EEEEE
Q 020756          181 FMTAT  185 (321)
Q Consensus       181 l~t~~  185 (321)
                      ++...
T Consensus       532 yv~~~  536 (689)
T 1yiq_A          532 YVTFM  536 (689)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.54  E-value=0.58  Score=42.67  Aligned_cols=143  Identities=10%  Similarity=0.091  Sum_probs=81.8

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce---eEEe------CCcCeeeEEEcCC---CCeEEEE-ccCCCCCc
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPK---GKFLCLA-GFGNLPGD  149 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~---~~~~------~~~~~~~~~~sPd---G~~l~~~-g~~n~~g~  149 (321)
                      ..-..++|.|||+.|++.  ...++|.+++.....   +..+      +......++++|+   ...|.++ .. .....
T Consensus        32 ~~P~~ia~~pdG~llVte--r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~-~~~~~  108 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSS--RDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS-ASDNR  108 (347)
T ss_dssp             SSEEEEEECTTSCEEEEE--TTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC-SSSEE
T ss_pred             CCceEEEEcCCCcEEEEE--ecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec-CCCCE
Confidence            345689999999876662  336789999764322   2222      3456778999996   3444432 11 12346


Q ss_pred             EEEEECCC----------CeEE-Eeee---CCCeeeEEEccCCCEEEEEEcCCc------e-eecCcEEEEeecCc----
Q 020756          150 MAFWDYVD----------GKQL-GTTR---AECSVTSEWSPDGRYFMTATTAPR------L-QIDNGIKIFHHNGS----  204 (321)
Q Consensus       150 i~iwD~~~----------~~~i-~~~~---~~~~~~~~wSpdG~~l~t~~s~~r------l-~~d~~v~iw~~~g~----  204 (321)
                      |.-|.+..          .+.+ ..+.   .|....+.|+|||.++++.++.-.      + ...+.|.-.+.+|.    
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            66676543          1222 2222   356667999999987777552100      0 01233444455554    


Q ss_pred             ------eeEEeccCceEEEEEecCCCCCCCC
Q 020756          205 ------LFFKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 ------~l~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                            .++.........++|.|+ ..++..
T Consensus       189 nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~  218 (347)
T 3das_A          189 NPFPGSPVYSYGHRNVQGLAWDDK-QRLFAS  218 (347)
T ss_dssp             CSSTTCCEEEBCCSBCCEEEECTT-CCEEEE
T ss_pred             CCCCCCeEEeeCCCCcceEEECCC-CCEEEE
Confidence                  244444456678899996 455543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.48  E-value=0.12  Score=49.67  Aligned_cols=136  Identities=8%  Similarity=0.034  Sum_probs=87.0

Q ss_pred             CeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCceeEEe-CC-----cCeeeEEE-------cCCCCeEEEEccCCC---
Q 020756           84 PVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILEL-GS-----GPYNTVRW-------NPKGKFLCLAGFGNL---  146 (321)
Q Consensus        84 ~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~-----~~~~~~~~-------sPdG~~l~~~g~~n~---  146 (321)
                      ....++++| +...|.++... ...|.++|++.+.+..+ ..     .....++|       +++|++|+++...+.   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~-~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDG-HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEET-EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECC-CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            356899999 46667776432 35799999988877776 22     13678999       999998887763321   


Q ss_pred             -CCcEEEEECCC-Ce--------EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--------Cce---
Q 020756          147 -PGDMAFWDYVD-GK--------QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--------GSL---  205 (321)
Q Consensus       147 -~g~i~iwD~~~-~~--------~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--------g~~---  205 (321)
                       ...|.+++... +.        .+..+  .....++.+|++.+|..+..     .++.|..+|+.        +.+   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~--~~p~giavdp~~g~LYvtd~-----~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAY--KQCNGATIHPINGELYFNSY-----EKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEE--SCCCCEEECTTTCCEEEEET-----TTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             cCceEEEEecCCCCceeecccceeeccC--CCceEEEEcCCCCeEEEEEC-----CCCEEEEEecccccccccCceeecc
Confidence             12477777544 11        22222  24456788997666666664     36668899886        322   


Q ss_pred             -----------eEEe-ccCceEEEEEecCCCCCC
Q 020756          206 -----------FFKK-MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       206 -----------l~~~-~~~~~~~~~w~P~~~~~~  227 (321)
                                 ++.. .....+.++|+|+...+|
T Consensus       292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lY  325 (496)
T 3kya_A          292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAY  325 (496)
T ss_dssp             BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             cccccccccceeEecCCCCCceEEEEcCCCCEEE
Confidence                       1111 123467899999987544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.41  E-value=0.075  Score=53.25  Aligned_cols=136  Identities=10%  Similarity=-0.072  Sum_probs=79.2

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC---CcCeeeEEEcCCCCeE
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFL  138 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~---~~~~~~~~~sPdG~~l  138 (321)
                      ..|+.++.++.....+.........+++++|.+..|++......+.|..+++.+.....+.   -..-+.|+|+|++..|
T Consensus       475 ~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~L  554 (699)
T 1n7d_A          475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL  554 (699)
T ss_dssp             SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred             CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEE
Confidence            4577777776533322111223457889999877666642112257888888776554442   2345789999998888


Q ss_pred             EEEccCCCCCcEEEEECCCCe--EEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756          139 CLAGFGNLPGDMAFWDYVDGK--QLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  206 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~--~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l  206 (321)
                      .++..  ..+.|+.+|++...  .+.....  .....+++..  .+|+.+..     ..+.|..++. +|+.+
T Consensus       555 Y~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~-----~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          555 YWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDI-----INEAIFSANRLTGSDV  618 (699)
T ss_dssp             EEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECS-----TTTCEEEEETTTEEEE
T ss_pred             EEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeC-----CCCeEEEEEccCCCce
Confidence            77763  34789999986432  2221111  1334455543  34444442     3567887775 45544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.40  E-value=0.94  Score=40.40  Aligned_cols=103  Identities=10%  Similarity=0.086  Sum_probs=60.0

Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC------CcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG------SGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~------~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                      ..+.......++++.++++++.+++   ..++.+.+.+.+ +.....+.      ...+..+.|.|++.+++++.    +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~~~~~---~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~----~  269 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGRLWMI---VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG----A  269 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSCEEEE---ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES----T
T ss_pred             eECCCCCCCccceeEECCCCCEEEE---eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC----C
Confidence            3444445567899999999976655   235666665433 33222221      12467889999888777654    4


Q ss_pred             CcEEEEECCCCe---EEEeee--CCCeeeEEEccCCCEEEEEE
Q 020756          148 GDMAFWDYVDGK---QLGTTR--AECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       148 g~i~iwD~~~~~---~i~~~~--~~~~~~~~wSpdG~~l~t~~  185 (321)
                      +.| ++..+.++   .+....  ......+.|.++++.++.+.
T Consensus       270 g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~  311 (327)
T 2xbg_A          270 GAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ  311 (327)
T ss_dssp             TCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred             CeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence            666 34454443   332211  12566788887777555544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.97  E-value=3.2  Score=41.06  Aligned_cols=57  Identities=16%  Similarity=0.231  Sum_probs=41.2

Q ss_pred             CCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  209 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~  209 (321)
                      +|.|.-||+.+++.+=..... ......+...|.++++++      .|+.++.||. +|+.+.+.
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~------~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT------AAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC------TTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC------CcccchhhhhhcChhheEe
Confidence            378999999999877555443 333345666788888876      4899999997 57777443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.93  E-value=1.1  Score=41.95  Aligned_cols=69  Identities=13%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-C----------c--eeEEe--C------CcCeeeEEEcCC---CCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C----------R--PILEL--G------SGPYNTVRWNPK---GKFL  138 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~----------~--~~~~~--~------~~~~~~~~~sPd---G~~l  138 (321)
                      +.|+.+..||+|++||++ |  +..+.|..+- .          .  ..+.+  +      ..++..+.|||-   |..|
T Consensus        66 ~~i~qlvlSpsG~lLAl~-g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L  142 (452)
T 3pbp_A           66 DDTFHVISSTSGDLLCLF-N--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI  142 (452)
T ss_dssp             CTTCEEEECTTSSEEEEE-C--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred             CceeEEEECCCCCEEEEe-c--CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence            367889999999999996 4  4578887662 1          0  11222  2      456899999995   4577


Q ss_pred             EEEccCCCCCcEEEEECCC
Q 020756          139 CLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~  157 (321)
                      ++-.   .|+.|++||+..
T Consensus       143 VVLt---sD~~Ir~yDl~~  158 (452)
T 3pbp_A          143 VVLK---EDDTITMFDILN  158 (452)
T ss_dssp             EEEE---TTSCEEEEETTC
T ss_pred             EEEe---cCCEEEEEEccc
Confidence            7766   789999999985

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.82  E-value=1.2  Score=43.22  Aligned_cols=78  Identities=17%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CCeEEEEeCC-CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCC
Q 020756          105 PASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGR  179 (321)
Q Consensus       105 ~~~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~  179 (321)
                      .+.+..||.. ++.+-++ .............|..|++++   .++.|+.||.++++.+-.+...   ....+.+..||+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~  519 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT---LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc---CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence            3578888885 4444444 122222222334567777776   7899999999999998877654   223355677887


Q ss_pred             EEEEEE
Q 020756          180 YFMTAT  185 (321)
Q Consensus       180 ~l~t~~  185 (321)
                      .++...
T Consensus       520 ~yv~~~  525 (571)
T 2ad6_A          520 QYIGSM  525 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            665554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.82  E-value=2.7  Score=39.60  Aligned_cols=183  Identities=9%  Similarity=0.129  Sum_probs=110.1

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee--eeecC--
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLR--   80 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~--~v~l~--   80 (321)
                      ..++||++..   .+.+....+ ..+++-.+|=.+...-++              .++.+|.|+.+|....  .....  
T Consensus        86 ~~lQiFnle~---K~klks~~~-~e~VvfWkWis~~~l~lV--------------T~taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           86 KTLQIFNIEM---KSKMKAHTM-TDDVTFWKWISLNTVALV--------------TDNAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             TEEEEEETTT---TEEEEEEEC-SSCCCEEEEEETTEEEEE--------------CSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             CeEEEEchHH---hhhhcceec-CCCceEEEecCCCeEEEE--------------cCCeeEEecccCCCCchhheecchh
Confidence            4678888887   556655554 457777777655333333              2345888888774222  22221  


Q ss_pred             -CCCCeEEEEECcCCCEEEEEE-----ccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCC-----eEEEEccCCCCCc
Q 020756           81 -KEGPVHDVQWSYSGSEFAVVY-----GFMPASATIFNKKCRPILELGSGPYNTVRWNPKGK-----FLCLAGFGNLPGD  149 (321)
Q Consensus        81 -~~~~v~~~~wsP~g~~l~~~~-----g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~-----~l~~~g~~n~~g~  149 (321)
                       ..-.|....-+++.+.++++.     +...|.+.||+.+.+.-+.+.........+-.+|+     .++++.-....+.
T Consensus       148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k  227 (494)
T 1bpo_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (494)
T ss_dssp             GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCE
T ss_pred             cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcE
Confidence             245788899999999988762     12346788999976655555222223344544443     4555542223478


Q ss_pred             EEEEECCCC--------eEEEeee-CC-----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEecc
Q 020756          150 MAFWDYVDG--------KQLGTTR-AE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  211 (321)
Q Consensus       150 i~iwD~~~~--------~~i~~~~-~~-----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~  211 (321)
                      +.|.++...        ++...+. .+     -...+..|+.-..+..-+.      -+-+++||+ +|.+++....
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrI  298 (494)
T 1bpo_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRI  298 (494)
T ss_dssp             EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecc
Confidence            999988532        1211111 11     3455788888777777773      677999998 6777766544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.66  E-value=0.93  Score=42.77  Aligned_cols=100  Identities=11%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCC-eEEEEeCC-Cc--eeEEeC--------CcCeeeEEEcCC---CCeEEEEccC----
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK-CR--PILELG--------SGPYNTVRWNPK---GKFLCLAGFG----  144 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~-~~--~~~~~~--------~~~~~~~~~sPd---G~~l~~~g~~----  144 (321)
                      ....++|.|+|+.+++   .+.+ +|.+++.. +.  .+..+.        ......++|+|+   +..|.++...    
T Consensus        28 ~P~~~a~~pdG~l~V~---e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           28 KPHALLWGPDNQIWLT---ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SEEEEEECTTSCEEEE---ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEE---EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            4468999999986666   3444 78888753 22  233332        244568999996   5555554311    


Q ss_pred             --CC----CCcEEEEECCCC-------eEEE-eee---CCCeeeEEEccCCCEEEEEEc
Q 020756          145 --NL----PGDMAFWDYVDG-------KQLG-TTR---AECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       145 --n~----~g~i~iwD~~~~-------~~i~-~~~---~~~~~~~~wSpdG~~l~t~~s  186 (321)
                        ..    ...|.-+++...       +.+. .+.   .|....+.|+|||.++++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence              00    235666665432       1121 122   256778999999998887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.54  E-value=0.36  Score=45.33  Aligned_cols=95  Identities=14%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CC---ce---------eeeecC-----CCCCeEEEEEC
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GT---HE---------GLVPLR-----KEGPVHDVQWS   91 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~---~~---------~~v~l~-----~~~~v~~~~ws   91 (321)
                      +..++.-||+|++|+++             |..++..+.+- +.   .+         ....++     ...+|..+.|+
T Consensus        67 ~i~qlvlSpsG~lLAl~-------------g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWH  133 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLF-------------NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFH  133 (452)
T ss_dssp             TTCEEEECTTSSEEEEE-------------CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEEC
T ss_pred             ceeEEEECCCCCEEEEe-------------cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEec
Confidence            56789999999999997             44445555443 11   00         011221     35789999999


Q ss_pred             cC---CCEEEEEEccCCCeEEEEeCCC---ceeEEeC-----------CcCeeeEEEcCCCCeEEE
Q 020756           92 YS---GSEFAVVYGFMPASATIFNKKC---RPILELG-----------SGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        92 P~---g~~l~~~~g~~~~~i~i~d~~~---~~~~~~~-----------~~~~~~~~~sPdG~~l~~  140 (321)
                      |-   |..|++.  ..++.|++||+..   .+. .+.           ...+.+++|..+|=.|.+
T Consensus       134 Pl~~~ds~LVVL--tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          134 PKSYRDSCIVVL--KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             TTBGGGCEEEEE--ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             cccCCCCeEEEE--ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence            94   5578876  5578999999953   233 331           134556777776544443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.40  E-value=4.6  Score=40.42  Aligned_cols=136  Identities=11%  Similarity=0.138  Sum_probs=84.0

Q ss_pred             cCCCceeecce--eEEEEEcCCCceeeeecC--------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe
Q 020756           52 DKTNQSYYGES--KLNYLTTDGTHEGLVPLR--------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL  121 (321)
Q Consensus        52 d~t~~s~~g~~--~l~~l~~~g~~~~~v~l~--------~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~  121 (321)
                      |..|..+.|..  .|+.++.....-..+...        ....|.++...++|+.|-+  |..++-+.+||.+...+..+
T Consensus       365 d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          365 DKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             CTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEe
Confidence            45566666542  577776554322222211        1356889998888883333  24445789999876655554


Q ss_pred             C-------CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee--------CCCeeeEEEccCCCEEEEEEc
Q 020756          122 G-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--------AECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       122 ~-------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--------~~~~~~~~wSpdG~~l~t~~s  186 (321)
                      .       ...+.++...++|++.+.+.     +.|.+||..+++......        ...+.++..+++|+..+ ++ 
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt-  515 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGTL-----SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GG-  515 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEES-----SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EE-
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEec-----CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-Ee-
Confidence            2       35678888888888666543     458999998775443221        13577888899998544 44 


Q ss_pred             CCceeecCcEEEEeec
Q 020756          187 APRLQIDNGIKIFHHN  202 (321)
Q Consensus       187 ~~rl~~d~~v~iw~~~  202 (321)
                            .+++.+|+..
T Consensus       516 ------~~Gl~~~~~~  525 (795)
T 4a2l_A          516 ------EEGLSVFKQE  525 (795)
T ss_dssp             ------SSCEEEEEEE
T ss_pred             ------CCceEEEeCC
Confidence                  2455566553

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.68  E-value=5.4  Score=38.58  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=38.2

Q ss_pred             CCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  209 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~  209 (321)
                      .+.|..||+.+++.+-.+... .+........|..+.+++      .|+.|+.||. +|+++.+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~------~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT------LDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc------CCCeEEEEECCCCCEEEEE
Confidence            478999999999877665443 222223344556666665      3899999997 67777444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.39  E-value=0.66  Score=45.75  Aligned_cols=115  Identities=9%  Similarity=0.087  Sum_probs=69.6

Q ss_pred             EEEEECc-CCCEEEEEEccCC----------CeEEEEeCCCceeE---Ee---CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756           86 HDVQWSY-SGSEFAVVYGFMP----------ASATIFNKKCRPIL---EL---GSGPYNTVRWNPKGKFLCLAGFGNLPG  148 (321)
Q Consensus        86 ~~~~wsP-~g~~l~~~~g~~~----------~~i~i~d~~~~~~~---~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g  148 (321)
                      +.+++.| +|+ |+++.|...          ..+.+||...+.+.   .+   .......+.+.++|++++++|..  +.
T Consensus       189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~--~~  265 (656)
T 1k3i_A          189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AK  265 (656)
T ss_dssp             SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TT
T ss_pred             eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC--CC
Confidence            3566777 555 444433211          15788998655433   23   22334457888999999999843  35


Q ss_pred             cEEEEECCCCeEEE--eeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          149 DMAFWDYVDGKQLG--TTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       149 ~i~iwD~~~~~~i~--~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      .+++||..+.+-..  .+... .-..+...+||+.++.++..-....-+.+.+||...
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            89999988764332  22222 223456778999999988321111236788888743

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.16  E-value=5.8  Score=37.42  Aligned_cols=144  Identities=13%  Similarity=0.135  Sum_probs=79.7

Q ss_pred             ccceEEeCCCCC-eeEEEEEecccCCCceeecceeEEEEEcCCCc--eeeeecC----------CCCCeEEEEECcC---
Q 020756           30 STVQLNWNRGST-GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLR----------KEGPVHDVQWSYS---   93 (321)
Q Consensus        30 ~~~~~~Wsp~G~-~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v~l~----------~~~~v~~~~wsP~---   93 (321)
                      .-..|.|.|+|+ .|+|..     +.|       .|+.++.++..  .....+.          -++...+++++|+   
T Consensus        15 ~P~~~a~~pdG~~rl~V~e-----r~G-------~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~   82 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILE-----KEG-------YVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKK   82 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEE-----TTT-------EEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHH
T ss_pred             CceEEEECCCCCeEEEEEe-----CCc-------eEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcC
Confidence            456899999997 566642     222       26666655432  1111111          1467889999996   


Q ss_pred             CCEEEEEEccC-C----------CeEEEEeCCC-----------ceeEEe----CCcCeeeEEEcCCCCeEEEEccCC--
Q 020756           94 GSEFAVVYGFM-P----------ASATIFNKKC-----------RPILEL----GSGPYNTVRWNPKGKFLCLAGFGN--  145 (321)
Q Consensus        94 g~~l~~~~g~~-~----------~~i~i~d~~~-----------~~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n--  145 (321)
                      ...|.+.+... +          ..|.-|.+..           +.+.++    .......|.|.|||.+.++.|.+.  
T Consensus        83 n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           83 NGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMIT  162 (463)
T ss_dssp             HCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCC
T ss_pred             CCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCC
Confidence            44555554321 1          1344454421           133333    234467899999998877766421  


Q ss_pred             ------------CCCcEEEEECCCC---------------------eEEEeeeCCCeeeEEEccC-----CCEEEEEE
Q 020756          146 ------------LPGDMAFWDYVDG---------------------KQLGTTRAECSVTSEWSPD-----GRYFMTAT  185 (321)
Q Consensus       146 ------------~~g~i~iwD~~~~---------------------~~i~~~~~~~~~~~~wSpd-----G~~l~t~~  185 (321)
                                  ..|.|.-.|.+..                     ..|...-.-+...++|.|.     |++.+.++
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~  240 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCS  240 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEE
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEec
Confidence                        2456666676541                     0122222226677999997     56544444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.08  E-value=1.5  Score=42.58  Aligned_cols=119  Identities=13%  Similarity=0.240  Sum_probs=77.8

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------ce-------eEE--eCCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RP-------ILE--LGSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~~-------~~~--~~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                      ...|.+..+|||+++++. |-.+.++.++|.+.       +.       +..  ++.++. ...|.++| ...++-|  .
T Consensus       323 ksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPl-Ht~Fd~~G-~aYTtlf--i  397 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPL-HTTFDGRG-NAYTTLF--I  397 (638)
T ss_dssp             SSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEE-EEEECSSS-EEEEEET--T
T ss_pred             CCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCccc-EEEECCCC-ceEeeee--e
Confidence            345789999999999887 66677999999742       11       111  133333 56799999 4445443  6


Q ss_pred             CCcEEEEECCCC----------eEEEeeeCC-CeeeEEE------ccCCCEEEEEEcCCceee-------cCcEEEEeec
Q 020756          147 PGDMAFWDYVDG----------KQLGTTRAE-CSVTSEW------SPDGRYFMTATTAPRLQI-------DNGIKIFHHN  202 (321)
Q Consensus       147 ~g~i~iwD~~~~----------~~i~~~~~~-~~~~~~w------SpdG~~l~t~~s~~rl~~-------d~~v~iw~~~  202 (321)
                      |.+|.-|++...          ..+..+.-| .+-.+.-      .|||+||++..-.-.-|.       -..-+|.|++
T Consensus       398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIs  477 (638)
T 3sbq_A          398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDIS  477 (638)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECS
T ss_pred             cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecC
Confidence            789999998752          345555544 3333433      689999999875332111       2356899998


Q ss_pred             Ccee
Q 020756          203 GSLF  206 (321)
Q Consensus       203 g~~l  206 (321)
                      |..+
T Consensus       478 GdkM  481 (638)
T 3sbq_A          478 GDEM  481 (638)
T ss_dssp             SSSC
T ss_pred             CCce
Confidence            8744

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.89  E-value=2.2  Score=41.93  Aligned_cols=96  Identities=5%  Similarity=0.012  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCceeee---ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC---CcC-eeeEEEcCCC
Q 020756           63 KLNYLTTDGTHEGLV---PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGP-YNTVRWNPKG  135 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v---~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~---~~~-~~~~~~sPdG  135 (321)
                      .++.++.....-..+   ...+....+.+++.++|+.+++- |..+..+.+||...+....+.   ... ..++...|+|
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~G-G~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg  298 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTG-GNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  298 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEEC-SSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeC-CCCCCceEEecCcCCceeECCCCCccccccceEEecCC
Confidence            455665544322222   11233445567888888766552 445568999999877666652   222 2346677899


Q ss_pred             CeEEEEccCC---CCCcEEEEECCCCe
Q 020756          136 KFLCLAGFGN---LPGDMAFWDYVDGK  159 (321)
Q Consensus       136 ~~l~~~g~~n---~~g~i~iwD~~~~~  159 (321)
                      ++++++|..+   ...++++||..+.+
T Consensus       299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          299 RVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEEEEeCcccCCcccccceEeCCCCCc
Confidence            9999998422   23679999998764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.56  E-value=6  Score=35.98  Aligned_cols=121  Identities=13%  Similarity=0.136  Sum_probs=72.8

Q ss_pred             ceeEEEEEcCCCceeee-ecC--CCCCeEEEEECcCCCEEEEEEc-c--------------CCCeEEEEeCCCceeEEe-
Q 020756           61 ESKLNYLTTDGTHEGLV-PLR--KEGPVHDVQWSYSGSEFAVVYG-F--------------MPASATIFNKKCRPILEL-  121 (321)
Q Consensus        61 ~~~l~~l~~~g~~~~~v-~l~--~~~~v~~~~wsP~g~~l~~~~g-~--------------~~~~i~i~d~~~~~~~~~-  121 (321)
                      ...|+.++..+.....+ .+.  .-...+|+...++|+.++.-.. .              ..+.+.-||..  .+..+ 
T Consensus       140 ~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~  217 (355)
T 3sre_A          140 TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA  217 (355)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEE
T ss_pred             eEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEee
Confidence            34577777765533322 222  2346789999999986554210 0              11345555553  23322 


Q ss_pred             -CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC-CeE--EEeeeCC-CeeeEEEcc-CCCEEEEEE
Q 020756          122 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQ--LGTTRAE-CSVTSEWSP-DGRYFMTAT  185 (321)
Q Consensus       122 -~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~-~~~--i~~~~~~-~~~~~~wSp-dG~~l~t~~  185 (321)
                       +-..-|.++|||||++|.++..  ..+.|+.||++. ++.  ...+... ..-.++..+ +|++.+++.
T Consensus       218 ~~l~~pNGia~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          218 EGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             cCCcccCcceECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence             3456789999999999988763  347899999863 322  2223222 344588888 598777665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=91.90  E-value=9.1  Score=37.70  Aligned_cols=75  Identities=12%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             CeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCE
Q 020756          106 ASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~  180 (321)
                      +.|..||+.+. .+-++ ...+.........|.+|++++   .++.|+.||.++++.+-.+...   ...-+.+..+|+.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~---~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT---AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC---CcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            57888998543 33333 223333445556788888886   8899999999999988877654   2234667788884


Q ss_pred             EEE
Q 020756          181 FMT  183 (321)
Q Consensus       181 l~t  183 (321)
                      .++
T Consensus       515 yva  517 (668)
T 1kv9_A          515 YVA  517 (668)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=91.79  E-value=7.1  Score=38.93  Aligned_cols=138  Identities=10%  Similarity=0.073  Sum_probs=83.6

Q ss_pred             cCCCceeecc--eeEEEEEcCCCceeeee---cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC----
Q 020756           52 DKTNQSYYGE--SKLNYLTTDGTHEGLVP---LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----  122 (321)
Q Consensus        52 d~t~~s~~g~--~~l~~l~~~g~~~~~v~---l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~----  122 (321)
                      |..|..|.|.  ..|+.++........+.   -.....|.++...++|...+.   ...+.+..||.+...+..+.    
T Consensus       371 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig---t~~~Gl~~~~~~~~~~~~~~~~~~  447 (781)
T 3v9f_A          371 DGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFG---TYLGNISYYNTRLKKFQIIELEKN  447 (781)
T ss_dssp             CTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEE---ETTEEEEEECSSSCEEEECCSTTT
T ss_pred             cCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEE---eccCCEEEEcCCCCcEEEeccCCC
Confidence            4556666654  35777665432111111   012356888888888876553   33456888888766555542    


Q ss_pred             -CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee--e-----CCCeeeEEEccCCCEEEEEEcCCceeecC
Q 020756          123 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT--R-----AECSVTSEWSPDGRYFMTATTAPRLQIDN  194 (321)
Q Consensus       123 -~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~--~-----~~~~~~~~wSpdG~~l~t~~s~~rl~~d~  194 (321)
                       ...+.++...++|++.+.+    . +.|.+||..+++.....  .     ...+.++...++|+..+ ++.      ++
T Consensus       448 ~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~------~~  515 (781)
T 3v9f_A          448 ELLDVRVFYEDKNKKIWIGT----H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTF------GG  515 (781)
T ss_dssp             CCCCEEEEEECTTSEEEEEE----T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EES------SS
T ss_pred             CCCeEEEEEECCCCCEEEEE----C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEc------CC
Confidence             3567888888888755543    3 46999998776432221  1     13577888899998554 442      45


Q ss_pred             cEEEEeecCc
Q 020756          195 GIKIFHHNGS  204 (321)
Q Consensus       195 ~v~iw~~~g~  204 (321)
                      ++..|+..+.
T Consensus       516 Gl~~~~~~~~  525 (781)
T 3v9f_A          516 GVGIYTPDMQ  525 (781)
T ss_dssp             CEEEECTTCC
T ss_pred             CEEEEeCCCC
Confidence            6777765443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=91.62  E-value=12  Score=37.39  Aligned_cols=108  Identities=11%  Similarity=0.093  Sum_probs=71.5

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-----------CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-----------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      ...|.++...++|...+.   ...+-+..||........+           ....+.++...++|++|.++.   .++.|
T Consensus       356 ~~~V~~i~~d~~g~lWiG---t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt---~~~Gl  429 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIG---TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT---HAGGL  429 (795)
T ss_dssp             CSSEEEEEECTTSCEEEE---ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE---TTTEE
T ss_pred             CCeeEEEEECCCCCEEEE---ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe---CcCce
Confidence            346889999998875543   4455688898866544443           134577888889998556665   55679


Q ss_pred             EEEECCCCeEEEee------eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          151 AFWDYVDGKQLGTT------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       151 ~iwD~~~~~~i~~~------~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      .+||..+++.....      ....+.++...++|+.. .++       .+++.+|+...
T Consensus       430 ~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw-igt-------~~Gl~~~~~~~  480 (795)
T 4a2l_A          430 SILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW-LGT-------LSALVRFNPEQ  480 (795)
T ss_dssp             EEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE-EEE-------SSCEEEEETTT
T ss_pred             eEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE-EEe-------cCceeEEeCCC
Confidence            99999877543322      12367788888888844 444       24666776543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.88  E-value=9.7  Score=35.86  Aligned_cols=100  Identities=12%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             eEEEEECcCCC-EEEEEEccCCCeEEEEeCCCc----eeEEeC-----------CcCeeeEEEcCC----CCeEEEEccC
Q 020756           85 VHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR----PILELG-----------SGPYNTVRWNPK----GKFLCLAGFG  144 (321)
Q Consensus        85 v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~----~~~~~~-----------~~~~~~~~~sPd----G~~l~~~g~~  144 (321)
                      -..++|.|||+ .++|.  .+.+.|.+++..+.    .+..+.           ......|+++|+    +.+.++-...
T Consensus        16 P~~~a~~pdG~~rl~V~--er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFIL--EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             EEEEECCSSSSCCEEEE--ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             ceEEEECCCCCeEEEEE--eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            35789999996 44443  55789999976432    333331           245567999997    5444432211


Q ss_pred             CC-------C--CcEEEEECCC----------CeEEEeee----CCCeeeEEEccCCCEEEEEEc
Q 020756          145 NL-------P--GDMAFWDYVD----------GKQLGTTR----AECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       145 n~-------~--g~i~iwD~~~----------~~~i~~~~----~~~~~~~~wSpdG~~l~t~~s  186 (321)
                      ..       +  ..|.-|.+..          .+.|..+.    .|....|.|.|||.++++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            00       0  1344455431          23333332    357778999999988887764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=90.00  E-value=9.9  Score=33.74  Aligned_cols=100  Identities=12%  Similarity=0.104  Sum_probs=58.5

Q ss_pred             CEEEEEEccCCCeEEEEeCC-CceeEEeC-CcC--------eeeEEEcC--CCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756           95 SEFAVVYGFMPASATIFNKK-CRPILELG-SGP--------YNTVRWNP--KGKFLCLAGFGNLPGDMAFWDYVDGKQLG  162 (321)
Q Consensus        95 ~~l~~~~g~~~~~i~i~d~~-~~~~~~~~-~~~--------~~~~~~sP--dG~~l~~~g~~n~~g~i~iwD~~~~~~i~  162 (321)
                      ..+++  +..++.+..+|.+ ++.+..+. ..+        +..+.-+|  .+..|++++   .++.|..+|..+++.+-
T Consensus       189 ~~v~~--g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~---~~g~l~~~d~~tG~~~w  263 (376)
T 3q7m_A          189 GAAVV--GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA---YNGNLTALDLRSGQIMW  263 (376)
T ss_dssp             TEEEE--CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC---TTSCEEEEETTTCCEEE
T ss_pred             CEEEE--EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe---cCcEEEEEECCCCcEEe
Confidence            34444  5667789999985 44443331 111        00011122  256666666   67899999999998776


Q ss_pred             eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeE
Q 020756          163 TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF  207 (321)
Q Consensus       163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~  207 (321)
                      .........+..  ++..|..++.      ++.+..+|. +|+.+.
T Consensus       264 ~~~~~~~~~~~~--~~~~l~~~~~------~g~l~~~d~~tG~~~w  301 (376)
T 3q7m_A          264 KRELGSVNDFIV--DGNRIYLVDQ------NDRVMALTIDGGVTLW  301 (376)
T ss_dssp             EECCCCEEEEEE--ETTEEEEEET------TCCEEEEETTTCCEEE
T ss_pred             eccCCCCCCceE--ECCEEEEEcC------CCeEEEEECCCCcEEE
Confidence            655444333333  4556666663      778888887 566553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=89.28  E-value=11  Score=33.36  Aligned_cols=64  Identities=9%  Similarity=-0.018  Sum_probs=37.9

Q ss_pred             CEEEEEEccCCCeEEEEeCC-CceeEEeC-CcCe------eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee
Q 020756           95 SEFAVVYGFMPASATIFNKK-CRPILELG-SGPY------NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  165 (321)
Q Consensus        95 ~~l~~~~g~~~~~i~i~d~~-~~~~~~~~-~~~~------~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~  165 (321)
                      ..+++  +..++.+..+|.+ ++.+..+. ..+.      ......  +..|+++.   .++.|..+|..+++.+-...
T Consensus       144 ~~v~v--~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~---~~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          144 GLVLI--HTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG---DNGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             TEEEE--ECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC---TTTEEEEEETTTCCEEEEEE
T ss_pred             CEEEE--EcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc---CCCEEEEEECCCCcEEEEEe
Confidence            34444  3567789999984 44444441 1111      222222  34566655   67899999999998765554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=88.70  E-value=14  Score=33.60  Aligned_cols=126  Identities=17%  Similarity=0.225  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECc----CCCE--EEEEEccC--CCeEEEEeC--CCceeEEeCC---------
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSY----SGSE--FAVVYGFM--PASATIFNK--KCRPILELGS---------  123 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP----~g~~--l~~~~g~~--~~~i~i~d~--~~~~~~~~~~---------  123 (321)
                      .|+.++.+|.....++   .+.++.+..-|    .|+.  ++++....  ..+|.+|++  ....+..+..         
T Consensus        51 gL~Vydl~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~  127 (355)
T 3amr_A           51 GLVVYSLDGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAI  127 (355)
T ss_dssp             EEEEEETTSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCC
T ss_pred             CEEEEcCCCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCC
Confidence            4788888776444442   26677777666    2333  55554444  579999966  4455666632         


Q ss_pred             cCeeeEEE--cCC-CC-eEEEEccCCCCCcEEEEECC-------CCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCcee
Q 020756          124 GPYNTVRW--NPK-GK-FLCLAGFGNLPGDMAFWDYV-------DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQ  191 (321)
Q Consensus       124 ~~~~~~~~--sPd-G~-~l~~~g~~n~~g~i~iwD~~-------~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~  191 (321)
                      ....-+++  +|. |+ ++++.+   .+|.+..|++.       +.+.+.++.-. .+-.|...+...+|..+-      
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~e------  198 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAE------  198 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEE------
T ss_pred             CCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEec------
Confidence            22233555  775 55 444454   66999999873       33667777665 566788888888888887      


Q ss_pred             ecCcEEEEe
Q 020756          192 IDNGIKIFH  200 (321)
Q Consensus       192 ~d~~v~iw~  200 (321)
                      .+.+|..++
T Consensus       199 Ed~GIw~~d  207 (355)
T 3amr_A          199 EDEAIWKFS  207 (355)
T ss_dssp             TTTEEEEEE
T ss_pred             ccceEEEEe
Confidence            365544444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.05  E-value=3  Score=35.54  Aligned_cols=93  Identities=10%  Similarity=0.097  Sum_probs=60.7

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------ceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      ..+.+++|+|+|...++ .   .+.+.-.+...       ..-..+   +-.....+.|.|+|.+.++ .    +|.|+-
T Consensus        41 ~~~~~laf~P~G~LYaV-~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~----dG~iyr  111 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-L---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S----KDKLYK  111 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-E---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E----TTEEEE
T ss_pred             ccceeEEECCCccEEEE-e---CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C----CCEEEE
Confidence            36779999999997777 2   34665555422       122233   2223578999999998888 3    288988


Q ss_pred             EECCC---------CeEEEeeeCCCeeeEEEccCCCEEEEE
Q 020756          153 WDYVD---------GKQLGTTRAECSVTSEWSPDGRYFMTA  184 (321)
Q Consensus       153 wD~~~---------~~~i~~~~~~~~~~~~wSpdG~~l~t~  184 (321)
                      ++.-+         ..+|...--..+..+.++|+|.+.+..
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            87522         123332222367889999999987766

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=87.33  E-value=3.2  Score=40.39  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             CCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-C--eeeEEEccCCC
Q 020756          105 PASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C--SVTSEWSPDGR  179 (321)
Q Consensus       105 ~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~--~~~~~wSpdG~  179 (321)
                      .+.+..||+.. +.+-++ ...+...-.....|.+|++++   .++.|+.||.++++.+-.+... .  ..-+.|..||+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~---~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT---GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC---CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            35788888854 443333 122222211222467777776   8899999999999998877764 2  23377889998


Q ss_pred             EEEEEE
Q 020756          180 YFMTAT  185 (321)
Q Consensus       180 ~l~t~~  185 (321)
                      .++...
T Consensus       542 qYv~~~  547 (582)
T 1flg_A          542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.27  E-value=15  Score=39.81  Aligned_cols=181  Identities=9%  Similarity=0.140  Sum_probs=97.4

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC----
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----   80 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~----   80 (321)
                      ..++||++..   .+.+....+ ..+++-.+|=...+.-+|              ..+.+|.|++.|.......++    
T Consensus        86 ~~lQiFnl~~---k~klks~~~-~e~VvfWkWis~~~l~lV--------------T~~aVyHW~~~~~s~P~k~fdR~~~  147 (1630)
T 1xi4_A           86 KTLQIFNIEM---KSKMKAHTM-TDDVTFWKWISLNTVALV--------------TDNAVYHWSMEGESQPVKMFDRHSS  147 (1630)
T ss_pred             CeEEEeehHH---hhhhccccc-CCCceEEEecCCCeeEEE--------------cCCeEEEeccCCCCccHHHHhcchh
Confidence            4677888877   455555554 456777777665444433              233478888876422211111    


Q ss_pred             -CCCCeEEEEECcCCCEEEEEE-----ccCCCeEEEEeCCCceeEEe--CCcCeeeEEE---cCCCCeEEEEccCCCCCc
Q 020756           81 -KEGPVHDVQWSYSGSEFAVVY-----GFMPASATIFNKKCRPILEL--GSGPYNTVRW---NPKGKFLCLAGFGNLPGD  149 (321)
Q Consensus        81 -~~~~v~~~~wsP~g~~l~~~~-----g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~---sPdG~~l~~~g~~n~~g~  149 (321)
                       ..-.|....-+++.+.++++.     |...|.+.+|+.+.+.-+.+  |.+....+..   .+....++++.-....+.
T Consensus       148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             145688888899999988762     23457889998865433333  2221111111   112234444432112367


Q ss_pred             EEEEECCCC--------eE-EEeeeC-----CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe
Q 020756          150 MAFWDYVDG--------KQ-LGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  209 (321)
Q Consensus       150 i~iwD~~~~--------~~-i~~~~~-----~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~  209 (321)
                      +.|.++...        ++ +..+..     .-...+..|+.-..+..-+      .-+-+++||+ +|.+++..
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it------k~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT------KYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe------cCceEEEEecccchhhhhc
Confidence            888887432        11 111111     1233466677655555555      2677899998 55555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=87.21  E-value=25  Score=34.91  Aligned_cols=136  Identities=10%  Similarity=0.081  Sum_probs=82.3

Q ss_pred             CCceeecc--eeEEEEEcCCCceeeeecC-----CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-----
Q 020756           54 TNQSYYGE--SKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----  121 (321)
Q Consensus        54 t~~s~~g~--~~l~~l~~~g~~~~~v~l~-----~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-----  121 (321)
                      .+..+.+.  ..|+.++.....-..+...     ....|.++...++|...+.   ...+.+..||.....+..+     
T Consensus       127 ~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig---t~~~Gl~~~~~~~~~~~~~~~~~~  203 (781)
T 3v9f_A          127 GKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIG---HVEGGLSILSLNDKSVKHFVHDPQ  203 (781)
T ss_dssp             TSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEE---ETTTEEEEEETTTTEEEEECC---
T ss_pred             CCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEE---ecCCCeEEEcCCCCceEeeecCCC
Confidence            45555543  3577776544322233211     1245778887777765543   3344688898866544433     


Q ss_pred             -----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe---------eeCCCeeeEEEccCCCEEEEEEcC
Q 020756          122 -----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT---------TRAECSVTSEWSPDGRYFMTATTA  187 (321)
Q Consensus       122 -----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~---------~~~~~~~~~~wSpdG~~l~t~~s~  187 (321)
                           ....+.++...++|++.+.+.    . .|.+||..+++....         +....+.++...++|.+. .++. 
T Consensus       204 ~~~~l~~~~i~~i~~d~~g~lwigt~----~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~-  276 (781)
T 3v9f_A          204 NPNSLPGNDVRCIYKDTNGNIWIGTS----K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATE-  276 (781)
T ss_dssp             -----CCSSEEEEEECTTCCEEEEET----T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEES-
T ss_pred             CcccCCCCceeEEEEcCCCCEEEEeC----C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeC-
Confidence                 234688888888888776653    2 689999877654321         112357778888888854 4552 


Q ss_pred             CceeecCcEEEEeecCc
Q 020756          188 PRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       188 ~rl~~d~~v~iw~~~g~  204 (321)
                           .+++.+++..+.
T Consensus       277 -----~~Gl~~~~~~~~  288 (781)
T 3v9f_A          277 -----LNGIMILDLQQN  288 (781)
T ss_dssp             -----SSCEEEEETTCC
T ss_pred             -----CCCeEEECCCCC
Confidence                 478888876543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=85.24  E-value=8.2  Score=37.42  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=37.2

Q ss_pred             CCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe
Q 020756          147 PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  209 (321)
Q Consensus       147 ~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~  209 (321)
                      .|.|.-||+.+++.+=..... ....-.....|.++..++      .|+.|+.||. +|+.+.+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~------~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT------GDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC------TTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC------CCCcEEEEECCCCCEEEEe
Confidence            578999999999876544432 222112223456666666      3899999997 68887544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=84.42  E-value=31  Score=33.48  Aligned_cols=77  Identities=12%  Similarity=0.053  Sum_probs=46.2

Q ss_pred             CeEEEEeCCC-ceeEEeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCE
Q 020756          106 ASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~-~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~  180 (321)
                      +.+..||+.. +.+-+.. ..+...-.....|.+|++++   .++.|+.||.++++.+-.++..   ...-+.|..||+.
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt---~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT---LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC---CCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            4667777743 3333331 11111111223567777766   8899999999999998777654   2334677888875


Q ss_pred             EEEEE
Q 020756          181 FMTAT  185 (321)
Q Consensus       181 l~t~~  185 (321)
                      ++...
T Consensus       530 yv~~~  534 (599)
T 1w6s_A          530 YVAIY  534 (599)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.31  E-value=26  Score=30.25  Aligned_cols=96  Identities=8%  Similarity=-0.033  Sum_probs=51.2

Q ss_pred             EEEEeCCCceeEEeCCcC--e-eeEEEcCCCCeEEEEccC-----CCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccC
Q 020756          108 ATIFNKKCRPILELGSGP--Y-NTVRWNPKGKFLCLAGFG-----NLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPD  177 (321)
Q Consensus       108 i~i~d~~~~~~~~~~~~~--~-~~~~~sPdG~~l~~~g~~-----n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpd  177 (321)
                      +.+||...+....+...+  + ......-++++++++|..     .....+++||..+.+  .+..+...........-+
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~  148 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM  148 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEEC
Confidence            778898877776663211  1 111111267777777742     124679999998763  333222221112233356


Q ss_pred             CCEEEEEEcCCceeecCcEEEEeecC
Q 020756          178 GRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       178 G~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ++.++.++.......-+.+.+||...
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCC
Confidence            77777776422122345677777643

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.70  E-value=5.4  Score=38.95  Aligned_cols=58  Identities=14%  Similarity=0.143  Sum_probs=41.1

Q ss_pred             EEEcCCCCeEEEEccCC---------CCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCEEEEEEc
Q 020756          129 VRWNPKGKFLCLAGFGN---------LPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       129 ~~~sPdG~~l~~~g~~n---------~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~s  186 (321)
                      |.|+|+|++++...-+.         ....|.+.+..+++....+..+   +++.++|+|||+.|.+..-
T Consensus       481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ  550 (592)
T 3zwu_A          481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence            89999999777654211         1245777788777665544443   7888999999999887663

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=80.57  E-value=48  Score=32.94  Aligned_cols=185  Identities=12%  Similarity=0.096  Sum_probs=88.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCcc----ceEEeCCCCCee---EEEEEecccCCCceeecceeEEEEEcCCCce
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCST----VQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHE   74 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~----~~~~Wsp~G~~l---~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~   74 (321)
                      |.|..|+.|.+.+   ...-... +|....    +...-+.++++.   +++.. ..+     .+ ...+|+++.+....
T Consensus       213 ~~~~~v~~~~~Gt---~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~-----~~-~~~~~~~~~~~~~~  281 (711)
T 4hvt_A          213 LYPNSLYIWKRGE---SIEKAKK-LFEVPKEYIYVSAGKLLSDTISSSLIFISA-NKD-----FY-NYDNYILDTKYKNL  281 (711)
T ss_dssp             SSBCEEEEEETTS---CGGGCEE-EEECCTTSCEEEEEESSCTTTCSSEEEEEE-ESS-----SS-CEEEEEEECSSSSC
T ss_pred             CCCCEEEEEECCC---ChHHCeE-EeccCCCceEEEEEEecCCCceEEEEEEEE-ecc-----cC-ceeEEEEcCCCCCC
Confidence            5688899999876   2222222 232211    223335677752   23221 111     11 23467777653222


Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEcc--------CCCeEEEEeCCC--------ceeEE-e-C--CcCeeeEEEcCC
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGF--------MPASATIFNKKC--------RPILE-L-G--SGPYNTVRWNPK  134 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~--------~~~~i~i~d~~~--------~~~~~-~-~--~~~~~~~~~sPd  134 (321)
                      ..+.+..... ..+.++.++..++.....        ..++|.+.|+..        ..... + +  ...+..+.|..+
T Consensus       282 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  360 (711)
T 4hvt_A          282 KLQKINMPSD-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD  360 (711)
T ss_dssp             EEEECCSCTT-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred             cceEeecCCc-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence            2233322111 223456666554432111        234788888743        12333 3 2  345667888865


Q ss_pred             CCeEEEEccCCCCCcEEEEECCCCe-EEEe---eeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          135 GKFLCLAGFGNLPGDMAFWDYVDGK-QLGT---TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       135 G~~l~~~g~~n~~g~i~iwD~~~~~-~i~~---~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                        .|++....+....|.++|+.+++ .+..   +.. ..+..+..++++..++...+.+.  .-..+..+|..
T Consensus       361 --~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~--~P~~~~~~d~~  429 (711)
T 4hvt_A          361 --RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSI--VPPTIYLWVKT  429 (711)
T ss_dssp             --CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSS--SCCEEEEECTT
T ss_pred             --EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCC--CCCEEEEEeCC
Confidence              34443322233468888887664 1222   222 24555667788766555443321  13345555544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=80.48  E-value=21  Score=30.63  Aligned_cols=110  Identities=10%  Similarity=0.035  Sum_probs=59.1

Q ss_pred             CCEEEEEEccC-CCeEEEEeCCCceeEEeCC---cCeeeEEEcCCCCeEEEEccC-CCCCcEEEEECCCCe--EEEeeeC
Q 020756           94 GSEFAVVYGFM-PASATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGK--QLGTTRA  166 (321)
Q Consensus        94 g~~l~~~~g~~-~~~i~i~d~~~~~~~~~~~---~~~~~~~~sPdG~~l~~~g~~-n~~g~i~iwD~~~~~--~i~~~~~  166 (321)
                      +..|+++.|.. ...+.+||...+....+..   .........-++++++++|.. .....+++||..+.+  .+..+..
T Consensus        11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34565554432 3478899998777776632   112222222367777777743 123689999998774  3333322


Q ss_pred             CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          167 ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       167 ~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      .........-+++.++.++........+.+.+||...
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            2111122233777777776421111235677777643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=80.36  E-value=3.6  Score=39.95  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             eEEEcCCCCeEEEEccCCCCCcEEEEECCCC------e-------EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeec
Q 020756          128 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------K-------QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQID  193 (321)
Q Consensus       128 ~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~------~-------~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d  193 (321)
                      .+..+|||++++.+|  -+..++.++|.+..      +       .+...+- ....+.+|.++| +..|..-     .|
T Consensus       327 Gv~vsPDGkyi~v~G--KLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlf-----id  398 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAG--KLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLF-----ID  398 (638)
T ss_dssp             CEEECTTSCEEEEEC--TTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEET-----TT
T ss_pred             ceeeCCCCCEEEEcC--CCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeee-----ec
Confidence            478999999999988  35689999998742      1       1233332 267778999999 4434332     69


Q ss_pred             CcEEEEeec
Q 020756          194 NGIKIFHHN  202 (321)
Q Consensus       194 ~~v~iw~~~  202 (321)
                      ..+.-|++.
T Consensus       399 SqvvkWni~  407 (638)
T 3sbq_A          399 SQVVKWNME  407 (638)
T ss_dssp             TEEEEEEHH
T ss_pred             ceEEEEecc
Confidence            999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 7e-08
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 10/118 (8%)

Query: 83  GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAG 142
             +  + +  +G   AV            NK  +  L L      ++++   GK+    G
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 143 FGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTATTAPRLQIDNGIKIF 199
                  +  W    G  +  ++   SV S + S D +Y +T +       D    ++
Sbjct: 285 KD---NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVY 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 82  EGPVHDVQWSYSGSEFAVVYG---FMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFL 138
           E  ++ + +  +G+ FA                 +      +       +V ++  G+ L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 139 CLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGI 196
                     +   WD +   + G     +  V+    + DG    T +       D+ +
Sbjct: 286 LAGYDD---FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFL 336

Query: 197 KIFH 200
           KI++
Sbjct: 337 KIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 7/90 (7%)

Query: 112 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT 171
              CR          N + + P G                     +          C +T
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 172 S-EWSPDGRYFMTATTAPRLQIDNGIKIFH 200
           S  +S  GR  +          D    ++ 
Sbjct: 275 SVSFSKSGRLLLAGYD------DFNCNVWD 298

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 86  HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGN 145
               +  SGS    +  +  ++       C   L         V ++  GKF+       
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVST-----GMCLMTLVGHDNWVRGVLFHSGGKFILSCADD- 268

Query: 146 LPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGIKIF 199
               +  WDY + + + T  A E  VTS ++     Y +T +       D  +K++
Sbjct: 269 --KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV------DQTVKVW 316

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 30/139 (21%)

Query: 82  EGPVHDVQWSYSGSEFAVV-------------YGFMPASATIFNKKCRPILELGSGPYNT 128
           +  V+ V ++  G                         S T  +  C            +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-------EWSPDGRY 180
           V      +++           + FWD   G  L   +    SV S          P+   
Sbjct: 314 VATTQNDEYILSGSKD---RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 181 FMTATTAPRLQIDNGIKIF 199
           F T +       D   +I+
Sbjct: 371 FATGSG------DCKARIW 383

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYF 181
           + P N++ ++P+ KFL  AG     G ++ W+    K++         +  + +      
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSD---GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 182 MTATTAPRLQIDNGIKI 198
             AT+      D+  K 
Sbjct: 308 CLATS------DDTFKT 318

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 16/146 (10%), Positives = 30/146 (20%), Gaps = 14/146 (9%)

Query: 59  YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI 118
                LN+     +   ++PL   G  +  +              +       +      
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIP-GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263

Query: 119 LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSE 173
            +                   G+F          G +  +D    K          +   
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLR-- 321

Query: 174 WSPDGRYFMTATTAPRLQIDNGIKIF 199
            S D +  M          D  I  F
Sbjct: 322 LSADRKTVMVRKD------DGKIYTF 341

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 13/86 (15%)

Query: 121 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTS-EWSP 176
               P +   WN     + +        ++  ++    K +     +     VT  +W+P
Sbjct: 5   FLVEPISCHAWNKDRTQIAICPNN---HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 177 DGRYFMTATTAPRLQIDNGIKIFHHN 202
           D    +T  T      D    ++   
Sbjct: 62  DSNRIVTCGT------DRNAYVWTLK 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.86
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.85
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.84
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.84
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.83
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.81
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.8
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.79
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.79
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.78
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.75
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.73
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.66
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.64
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.61
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.6
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.56
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.55
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.52
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.52
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.46
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.45
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.42
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.4
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.37
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.37
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.34
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.25
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.22
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.19
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.17
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.17
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.17
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.16
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.11
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.11
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.09
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.0
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.95
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.92
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.9
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.75
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.7
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.57
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.52
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.21
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.14
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.05
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.83
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.8
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.79
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.71
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.66
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.57
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.07
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.38
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.23
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.04
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.78
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.41
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.92
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.52
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.49
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	83.98
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	83.98
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	82.42
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	82.15

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=1.3e-20  Score=169.71  Aligned_cols=201  Identities=16%  Similarity=0.147  Sum_probs=154.4

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--eeeecCCC
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLRKE   82 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~v~l~~~   82 (321)
                      ..|.||++.+   .........+...+..+.|+|+|++|+... .         .|.  +.+++......  ......|.
T Consensus        38 ~~v~i~~~~~---~~~~~~~~~H~~~v~~~~~sp~g~~latg~-~---------dg~--i~iwd~~~~~~~~~~~~~~~~  102 (311)
T d1nr0a1          38 TSVYTVPVGS---LTDTEIYTEHSHQTTVAKTSPSGYYCASGD-V---------HGN--VRIWDTTQTTHILKTTIPVFS  102 (311)
T ss_dssp             TEEEEEETTC---SSCCEEECCCSSCEEEEEECTTSSEEEEEE-T---------TSE--EEEEESSSTTCCEEEEEECSS
T ss_pred             CEEEEEECCC---CceeEEEcCCCCCEEEEEEeCCCCeEeccc-c---------Cce--Eeeeeeecccccccccccccc
Confidence            4689999988   566666666778899999999999987642 1         133  44555544321  12223478


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCe-EEEEccCCCCCcEEEEECCCC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~-l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ++|.+++|+|+|+.|+++....+..+.+|+++. ..+..+  |...+.++.|+|+|++ |++++   .++.|++||++++
T Consensus       103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs---~d~~i~i~d~~~~  179 (311)
T d1nr0a1         103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS---DDNTVAIFEGPPF  179 (311)
T ss_dssp             SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE---TTSCEEEEETTTB
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccc---ccccccccccccc
Confidence            899999999999999998666677899999854 334444  6788999999999997 55566   7899999999999


Q ss_pred             eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE---------eccCceEEEEEecCCCCC
Q 020756          159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK---------KMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~---------~~~~~~~~~~w~P~~~~~  226 (321)
                      +.+..+..|  .+..+.|+|+|++|++++.      |+.++|||.. +..+..         .|...|..++|+|++..+
T Consensus       180 ~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~------d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGG------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccCccccccccccc------cccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence            988888776  7889999999999999994      9999999984 333322         245679999999999888


Q ss_pred             CCC
Q 020756          227 FGD  229 (321)
Q Consensus       227 ~~~  229 (321)
                      ++.
T Consensus       254 ~tg  256 (311)
T d1nr0a1         254 ASA  256 (311)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=3.8e-20  Score=166.53  Aligned_cols=202  Identities=18%  Similarity=0.250  Sum_probs=145.2

Q ss_pred             CCCceEEEEEcCCcCCCCcee--eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756            2 GSPASVQIYACGKDLQSQPLA--RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~--~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l   79 (321)
                      +..+.|+||++..   ++.+.  ....+...+..+.|+|+|++|++... +.+.         .+.+++.+.........
T Consensus        77 ~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~-~~~~---------~~~v~~~~~~~~~~~l~  143 (311)
T d1nr0a1          77 DVHGNVRIWDTTQ---TTHILKTTIPVFSGPVKDISWDSESKRIAAVGE-GRER---------FGHVFLFDTGTSNGNLT  143 (311)
T ss_dssp             ETTSEEEEEESSS---TTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC-CSSC---------SEEEEETTTCCBCBCCC
T ss_pred             ccCceEeeeeeec---cccccccccccccCccccccccccccccccccc-cccc---------ccccccccccccccccc
Confidence            4578999999998   44443  34446778889999999999887631 1111         12233333322222223


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      .|.+.|++++|+|+|+++++. |..++.|.+||++.. ....+  |...+.++.|+|+|++|++++   .++.|.+||+.
T Consensus       144 ~h~~~v~~v~~~~~~~~~l~s-gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~---~d~~v~~~d~~  219 (311)
T d1nr0a1         144 GQARAMNSVDFKPSRPFRIIS-GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG---GDGTIVLYNGV  219 (311)
T ss_dssp             CCSSCEEEEEECSSSSCEEEE-EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETT
T ss_pred             ccccccccccccccceeeecc-cccccccccccccccccccccccccccccccccCcccccccccc---ccccccccccc
Confidence            478899999999999975443 567899999999754 34444  678999999999999999998   89999999999


Q ss_pred             CCeEEEeeeC-------C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEe--cc---CceEEEEEec
Q 020756          157 DGKQLGTTRA-------E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MF---DKLFQAEWKP  221 (321)
Q Consensus       157 ~~~~i~~~~~-------~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~--~~---~~~~~~~w~P  221 (321)
                      +++.+..+..       |  .+++++|||||++|++++.      |+.|+|||+. ++++...  +.   ..+..+.|++
T Consensus       220 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~------Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~  293 (311)
T d1nr0a1         220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK  293 (311)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred             cccccccccccccccccccccccccccCCCCCEEEEEeC------CCeEEEEECCCCcEEEEEECCCCccceEEEEEecC
Confidence            9887776642       2  5889999999999999984      9999999984 5555332  22   2455666654


Q ss_pred             CCCCCCC
Q 020756          222 VSPDKFG  228 (321)
Q Consensus       222 ~~~~~~~  228 (321)
                      +  .++.
T Consensus       294 ~--~l~s  298 (311)
T d1nr0a1         294 Q--ALVS  298 (311)
T ss_dssp             S--CEEE
T ss_pred             C--EEEE
Confidence            3  4543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.3e-20  Score=165.33  Aligned_cols=204  Identities=9%  Similarity=0.107  Sum_probs=158.1

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++.... ................+.|+|++.+++...            ....+..++............|
T Consensus       116 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------------~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         116 GEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDSKVCFSCC------------SDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             ESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEE------------TTSCEEEEETTTTEEEEEECCC
T ss_pred             ecccccccccccccc-cccccccccccccccccccccccccccccc------------cccccccccccccccccccccc
Confidence            357899999998732 233444445566777889999999887642            1123566666555444455567


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  159 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~  159 (321)
                      ...|.+++|++++..+++.  ..++.+.+||++. +.+..+ +...+.++.|+|++++|++++   .++.|++||+++++
T Consensus       183 ~~~v~~l~~s~~~~~~~~~--~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~d~~i~i~d~~~~~  257 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTG--GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPD  257 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSC
T ss_pred             ccccccccccccccccccc--cccccccccccccceeecccccccceEEEEEcccccccceec---cccccccccccccc
Confidence            8999999999999998884  6688999999964 455555 688999999999999999998   88999999999887


Q ss_pred             EEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee-EEeccCceEEEEEecCCCCCCCC
Q 020756          160 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF-FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       160 ~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l-~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ......+. .++.++|+|||++|++++.      |+.|+|||+. ++.+ ...+...+..++|+|++..+++.
T Consensus       258 ~~~~~~~~~~i~~v~~s~~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         258 KYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             cccccccccccceEEECCCCCEEEEEeC------CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEE
Confidence            76655443 7899999999999999984      9999999984 5555 44566789999999998877764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=3.7e-19  Score=157.86  Aligned_cols=214  Identities=9%  Similarity=0.077  Sum_probs=157.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEec------ccCC---Cce---ee---cc-----
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD------VDKT---NQS---YY---GE-----   61 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d------~d~t---~~s---~~---g~-----   61 (321)
                      |.++.|+||++.+   ++.+.........+..+.|+|+|.++++.....      ....   ...   ..   +.     
T Consensus        74 s~Dg~v~iWd~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (340)
T d1tbga_          74 SQDGKLIIWDSYT---TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR  150 (340)
T ss_dssp             ETTTEEEEEETTT---TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEE
T ss_pred             ECCCceeeeeccc---ceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccc
Confidence            4679999999998   778888777788899999999999987753110      0000   000   00   00     


Q ss_pred             -------------eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcC
Q 020756           62 -------------SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP  125 (321)
Q Consensus        62 -------------~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~  125 (321)
                                   ...................+...+....+.+.+..+++  +..++.+.+||++ +..+..+  |...
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~i~d~~~~~~~~~~~~h~~~  228 (340)
T d1tbga_         151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREGMCRQTFTGHESD  228 (340)
T ss_dssp             EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTTEEEEEETTTTEEEEEECCCSSC
T ss_pred             cccccccccccccccccccccccccccccccccceeEeeeccccccceeEE--eecCceEEEEECCCCcEEEEEeCCCCC
Confidence                         00011111111112222335678889999999988887  4678899999995 4556666  6889


Q ss_pred             eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +++++|+|+|++|++++   .++.|++||+.....+..+...    .++.++|+|+|++|++++.      |+.|+|||+
T Consensus       229 i~~v~~~p~~~~l~s~s---~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------dg~i~iwd~  299 (340)
T d1tbga_         229 INAICFFPNGNAFATGS---DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDA  299 (340)
T ss_dssp             EEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET------TSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEe---CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC------CCEEEEEEC
Confidence            99999999999999998   8999999999998877765432    5788999999999999995      999999998


Q ss_pred             -cCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756          202 -NGSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       202 -~g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                       +++++  +..|...|..++|+|+...+++.
T Consensus       300 ~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence             56666  44577899999999998887764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-19  Score=162.09  Aligned_cols=172  Identities=11%  Similarity=0.177  Sum_probs=139.7

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|++|++.+   ++.......+......+.|+++|..+++...            ...+.+++.... .....+.+.
T Consensus       161 ~d~~i~~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~------------d~~v~i~d~~~~-~~~~~~~~~  224 (337)
T d1gxra_         161 SDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISNDGTKLWTGGL------------DNTVRSWDLREG-RQLQQHDFT  224 (337)
T ss_dssp             TTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEEET------------TSEEEEEETTTT-EEEEEEECS
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccc------------cccccccccccc-eeecccccc
Confidence            457899999988   6666666666778889999999998877521            112455565443 333445678


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      +.|.+++|+|+++.|++  +..++.+.+||++.......  |...+.++.|+|+|++|++++   .|+.|++||+.++++
T Consensus       225 ~~i~~l~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s---~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         225 SQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCE
T ss_pred             cceEEEEEcccccccce--eccccccccccccccccccccccccccceEEECCCCCEEEEEe---CCCeEEEEECCCCCE
Confidence            99999999999999987  46688999999976544443  788999999999999999998   899999999999998


Q ss_pred             EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          161 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       161 i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +..+.+. .+++++|||||++|++++.      |+.|+|||+
T Consensus       300 ~~~~~~~~~v~~~~~s~d~~~l~t~s~------D~~I~vWdl  335 (337)
T d1gxra_         300 IFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVYEV  335 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSCEEEEEET------TSCEEEEEE
T ss_pred             EEEccCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEEE
Confidence            8887765 7899999999999999984      999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3.6e-19  Score=163.12  Aligned_cols=201  Identities=12%  Similarity=0.117  Sum_probs=145.8

Q ss_pred             CCCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeee-
Q 020756            2 GSPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLV-   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v-   77 (321)
                      +..+.|+||++..   ++  .+....-++..+..+.|+|+|++|+... .  |       +.  +++++..... .... 
T Consensus        26 ~~~~~i~iw~~~~---~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-~--D-------~~--i~vWd~~~~~~~~~~~   90 (371)
T d1k8kc_          26 PNNHEVHIYEKSG---NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-T--D-------RN--AYVWTLKGRTWKPTLV   90 (371)
T ss_dssp             CSSSEEEEEEEET---TEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-T--T-------SC--EEEEEEETTEEEEEEE
T ss_pred             eCCCEEEEEECCC---CCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-C--C-------Ce--EEEEeecccccccccc
Confidence            3568999999987   44  3344444567889999999999887642 1  1       22  3444443332 2222 


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--e-e-EEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--P-I-LEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~-~-~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      ...+...|.+++|+|+++.|++.  ..++.+.+|++...  . . ...   +...+.++.|+|+|++|++++   .|+.|
T Consensus        91 ~~~~~~~v~~i~~~p~~~~l~~~--s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s---~D~~v  165 (371)
T d1k8kc_          91 ILRINRAARCVRWAPNEKKFAVG--SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS---CDFKC  165 (371)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEE--ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE---TTSCE
T ss_pred             cccccccccccccccccccceee--cccCcceeeeeecccccccccccccccccccccccccccccceeccc---cCcEE
Confidence            23467899999999999999985  56788999987332  1 1 122   567899999999999999998   89999


Q ss_pred             EEEECCCC------------------eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--E
Q 020756          151 AFWDYVDG------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--F  207 (321)
Q Consensus       151 ~iwD~~~~------------------~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~  207 (321)
                      ++||....                  ..+.....+  .+..++|+|||++|++++.      |+.++|||+. +..+  .
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~------d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------DSTVCLADADKKMAVATL  239 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------TTEEEEEEGGGTTEEEEE
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc------CCcceEEeeecccceeee
Confidence            99997642                  234444444  6788999999999999984      9999999984 4555  4


Q ss_pred             EeccCceEEEEEecCCCCCCC
Q 020756          208 KKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       208 ~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ..+...+..+.|+|+...+..
T Consensus       240 ~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         240 ASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             ECSSCCEEEEEEEETTEEEEE
T ss_pred             ecccccceeeeecCCCCEEEE
Confidence            446678999999998765544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.8e-18  Score=150.77  Aligned_cols=214  Identities=10%  Similarity=0.126  Sum_probs=159.6

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecc----c-CC----------------------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV----D-KT----------------------   54 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~----d-~t----------------------   54 (321)
                      |.++.|+||++.+   ++.+.....+...+..+.|+++|.+++.......    + ..                      
T Consensus        36 s~Dg~i~iWd~~~---~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (317)
T d1vyhc1          36 SEDATIKVWDYET---GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  112 (317)
T ss_dssp             ESSSCEEEEETTT---CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             eCCCeEEEEECCC---CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCC
Confidence            4678999999998   7888888778888899999999998876532110    0 00                      


Q ss_pred             Cce---eecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeee
Q 020756           55 NQS---YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNT  128 (321)
Q Consensus        55 ~~s---~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~  128 (321)
                      +..   ......+.+++............|...+..++|+|++..|++.  ..++.+.+|+... ..+..+  +...+..
T Consensus       113 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~v~~~~~~~~~~~~~~~~~~~~i~~  190 (317)
T d1vyhc1         113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC--SNDQTVRVWVVATKECKAELREHRHVVEC  190 (317)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             CceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE--eCCCeEEEEeeccceeeEEEecCCCCceE
Confidence            000   0011123333443332222233477899999999999998884  6688999999854 455555  5777888


Q ss_pred             EEEcCCC--------------------CeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756          129 VRWNPKG--------------------KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       129 ~~~sPdG--------------------~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s  186 (321)
                      +.|+|++                    .++++++   .++.|++||+.+++++..+..|  .+..++|+|+|++|++++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  267 (317)
T d1vyhc1         191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD  267 (317)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEE---TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             EEEeeccccceeeccccceeeeeccCCceeEecc---CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC
Confidence            8888874                    4567777   8899999999999999988876  7889999999999999994


Q ss_pred             CCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756          187 APRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       187 ~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                            |+.|+|||+. ++++  +..|...|..++|+|+...+++.
T Consensus       268 ------dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~  307 (317)
T d1vyhc1         268 ------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG  307 (317)
T ss_dssp             ------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             ------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence                  9999999994 5555  45578899999999999887764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=1e-18  Score=156.64  Aligned_cols=178  Identities=11%  Similarity=0.067  Sum_probs=139.3

Q ss_pred             eEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756           33 QLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  111 (321)
Q Consensus        33 ~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~  111 (321)
                      ...||| ||+++++..             ...+|+++..++..  +.+.|.+.|.+++|||||+.|+++.......+.+|
T Consensus         7 ~~~fSP~dG~~~a~~~-------------~g~v~v~d~~~~~~--~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~   71 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-------------RGQAFIQDVSGTYV--LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY   71 (360)
T ss_dssp             EEEEEECGGGCEEEEE-------------TTEEEEECTTSSBE--EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred             cccccCCCCCEEEEEE-------------CCeEEEEECCCCcE--EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEE
Confidence            356999 999998852             12478888877644  44578999999999999999998754444479999


Q ss_pred             eCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcC
Q 020756          112 NKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTA  187 (321)
Q Consensus       112 d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~  187 (321)
                      |.++.....+  +...+..+.|+|||++|++++   .++.+++||+.++++...+..+  .+..++|||||++|+++...
T Consensus        72 d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~  148 (360)
T d1k32a3          72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL  148 (360)
T ss_dssp             ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             ECCCCcEEEeeCCCceEEeeeecccccccceec---cccccccccccccceeeeeecccccccchhhccceeeeeeeccc
Confidence            9988777766  788899999999999999998   8899999999999887777665  67789999999999976632


Q ss_pred             C----ceeecCcEEEEeecCceeEE--eccCceEEEEEecCCCCCCC
Q 020756          188 P----RLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       188 ~----rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~~~~~~~  228 (321)
                      .    ....+..+++|+..+.....  .+...+..+.|+|++..++.
T Consensus       149 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  195 (360)
T d1k32a3         149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  195 (360)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             cccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEE
Confidence            1    11134568999997665432  34457788999999887764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.2e-18  Score=150.22  Aligned_cols=173  Identities=13%  Similarity=0.188  Sum_probs=136.5

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.+++|++.+   ++.+............+.|+++|..|+....   |       |  .+..++............+
T Consensus       120 ~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d-------~--~v~~~~~~~~~~~~~~~~~  184 (317)
T d1vyhc1         120 SRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASCSN---D-------Q--TVRVWVVATKECKAELREH  184 (317)
T ss_dssp             ETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSEEEEEET---T-------S--CEEEEETTTCCEEEEECCC
T ss_pred             ccCcceeEeeccc---ceeeeEEccCCCcceeeecccCCCEEEEEeC---C-------C--eEEEEeeccceeeEEEecC
Confidence            3467899999998   6777777777778889999999998876421   1       2  2445555443233333346


Q ss_pred             CCCeEEEEECcCCCE--------------------EEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeE
Q 020756           82 EGPVHDVQWSYSGSE--------------------FAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~--------------------l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l  138 (321)
                      ...+..+.|+|++..                    +++  +..++.+.+||+. +..+.++  |...+..+.|+|+|++|
T Consensus       185 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  262 (317)
T d1vyhc1         185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI  262 (317)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCE
T ss_pred             CCCceEEEEeeccccceeeccccceeeeeccCCceeEe--ccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEE
Confidence            788899999887643                    333  5678999999995 4566666  78899999999999999


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      ++++   .||.|+|||+.+++++..+..|  .+++++|+|||++|++++.      |+.|+|||
T Consensus       263 ~s~~---~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~------Dg~i~iWd  317 (317)
T d1vyhc1         263 LSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV------DQTVKVWE  317 (317)
T ss_dssp             EEEE---TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET------TSEEEEEC
T ss_pred             EEEE---CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCeEEEeC
Confidence            9999   8999999999999999988876  7899999999999999994      99999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=4e-18  Score=156.08  Aligned_cols=182  Identities=15%  Similarity=0.240  Sum_probs=133.0

Q ss_pred             ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeec-CCCCCeEEEEECcCCCEEEEEEc
Q 020756           25 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-RKEGPVHDVQWSYSGSEFAVVYG  102 (321)
Q Consensus        25 ~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l-~~~~~v~~~~wsP~g~~l~~~~g  102 (321)
                      +|....+..+.|||+|++|++...          -|.  |.+++..+.. .....+ .|.++|.+++|+|+|++|+++  
T Consensus         4 ~~~~~pIt~~~~s~dg~~la~~~~----------~~~--i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~--   69 (371)
T d1k8kc_           4 SFLVEPISCHAWNKDRTQIAICPN----------NHE--VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC--   69 (371)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECS----------SSE--EEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE--
T ss_pred             CCCCCCeEEEEECCCCCEEEEEeC----------CCE--EEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEE--
Confidence            444566788999999999877521          132  4444444332 233333 589999999999999999885  


Q ss_pred             cCCCeEEEEeCCCce---eEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE----EEeeeCC--Ceee
Q 020756          103 FMPASATIFNKKCRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ----LGTTRAE--CSVT  171 (321)
Q Consensus       103 ~~~~~i~i~d~~~~~---~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~----i~~~~~~--~~~~  171 (321)
                      ..|+.++|||+....   ...+  +...+.++.|+|+|++|++++   .++.|.+|+++....    ......+  .+.+
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             ECCCeEEEEeecccccccccccccccccccccccccccccceeec---ccCcceeeeeeccccccccccccccccccccc
Confidence            568999999996442   3333  577899999999999999998   889999998765421    2222223  6889


Q ss_pred             EEEccCCCEEEEEEcCCceeecCcEEEEeecC-------------------ceeE--EeccCceEEEEEecCCCCCCCC
Q 020756          172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-------------------SLFF--KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-------------------~~l~--~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ++|+|||++|++++.      |+.++||+...                   .++.  ..+...+..++|+|+...++..
T Consensus       147 v~~~p~~~~l~s~s~------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  219 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSC------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  219 (371)
T ss_dssp             EEECTTSSEEEEEET------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             ccccccccceecccc------CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence            999999999999984      99999999732                   2232  2355678999999998776644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.4e-17  Score=149.96  Aligned_cols=181  Identities=12%  Similarity=0.110  Sum_probs=129.0

Q ss_pred             CCceEEEEEcCCcCCCCceeee--------ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce
Q 020756            3 SPASVQIYACGKDLQSQPLARR--------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE   74 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~--------~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~   74 (321)
                      ..+.|+||++..   ++.+...        ..+...+..+.|+++|++|++... +.+         ..+..+..+....
T Consensus        85 ~Dg~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-~~~---------~~~~~~~~~~~~~  151 (325)
T d1pgua1          85 ESGKVIVWGWTF---DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE-GRD---------NFGVFISWDSGNS  151 (325)
T ss_dssp             TTSEEEEEEEEE---EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC-CSS---------CSEEEEETTTCCE
T ss_pred             CCCCEEEeeecC---CcceeeeecccccccccccCcEEEEEECCCCCccceeec-ccc---------ceEEEEeeccccc
Confidence            578999999987   2322221        223455678999999999987642 111         1133344443322


Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-----CCcCeeeEEEcCC-CCeEEEEccCCCC
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPK-GKFLCLAGFGNLP  147 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-----~~~~~~~~~~sPd-G~~l~~~g~~n~~  147 (321)
                      ......|...|.++.|+|++..+++. +..++.+.+||.... ....+     +...+.+++|+|+ +.+|++++   .|
T Consensus       152 ~~~~~~h~~~v~~~~~~~~~~~~~~~-~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~---~d  227 (325)
T d1pgua1         152 LGEVSGHSQRINACHLKQSRPMRSMT-VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SD  227 (325)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEE-EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TT
T ss_pred             ceeeeecccccccccccccccceEEE-eecccccccccccccccceecccccCCCCccEEeeeccccceeccccc---cc
Confidence            22223478999999999999876654 456899999998543 33333     4567899999997 67888888   88


Q ss_pred             CcEEEEECCCCeEEEeeeCC--CeeeEEEc---cCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          148 GDMAFWDYVDGKQLGTTRAE--CSVTSEWS---PDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~~~~~--~~~~~~wS---pdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                      +.|++||+++++++.++..|  .+..+.|+   |||++|++++.      |+.++|||+. ++++
T Consensus       228 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~------D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA------DATIRVWDVTTSKCV  286 (325)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET------TSEEEEEETTTTEEE
T ss_pred             cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeC------CCeEEEEECCCCCEE
Confidence            99999999999999988765  44445555   78999999995      9999999995 5555

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=3e-17  Score=145.31  Aligned_cols=156  Identities=13%  Similarity=0.126  Sum_probs=119.9

Q ss_pred             eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE
Q 020756           22 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY  101 (321)
Q Consensus        22 ~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~  101 (321)
                      ..............+.+.+..++...            ....+.+++............|.++|.+++|+|+|+.|++. 
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-  244 (340)
T d1tbga_         178 TTFTGHTGDVMSLSLAPDTRLFVSGA------------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-  244 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEE------------TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-
T ss_pred             ccccccceeEeeeccccccceeEEee------------cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-
Confidence            33334445556667777776665431            12235566665543333333588999999999999999884 


Q ss_pred             ccCCCeEEEEeCCCc-eeEEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEE
Q 020756          102 GFMPASATIFNKKCR-PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  174 (321)
Q Consensus       102 g~~~~~i~i~d~~~~-~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~w  174 (321)
                       ..++.+.+||++.. .+..+    +...+..+.|+|+|++|++++   .+|.|+|||+.+++++..+.+|  .+++++|
T Consensus       245 -s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~  320 (340)
T d1tbga_         245 -SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALKADRAGVLAGHDNRVSCLGV  320 (340)
T ss_dssp             -ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE---TTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             -eCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE---CCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence             66899999999654 33443    456789999999999999998   8999999999999999999876  7899999


Q ss_pred             ccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          175 SPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       175 SpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      +|||++|++++.      |+.|+|||
T Consensus       321 s~d~~~l~s~s~------Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGMAVATGSW------DSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEET------TSCEEEEC
T ss_pred             eCCCCEEEEEcc------CCEEEEeC
Confidence            999999999994      99999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.5e-17  Score=153.25  Aligned_cols=139  Identities=17%  Similarity=0.266  Sum_probs=106.2

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--------CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  151 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~  151 (321)
                      +...+.+++|+|+| .|++  |..|+.|+|||+.. +++..+        |...|++++|||||++|++++..+..+.|+
T Consensus       183 ~~~~~~~v~~s~dg-~las--gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIAT--GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  259 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEE--ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEEECCCC-EEEE--EeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceee
Confidence            45668899999998 5554  67899999999964 444332        577899999999999999998222224699


Q ss_pred             EEECCCCeEEEeee-------------CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCc
Q 020756          152 FWDYVDGKQLGTTR-------------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDK  213 (321)
Q Consensus       152 iwD~~~~~~i~~~~-------------~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~  213 (321)
                      +||+++++++..+.             +|  .|++++|||||++|++++      .|+.|+|||+ +|+++  +..|.+.
T Consensus       260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s------~D~~v~vWd~~~g~~~~~l~gH~~~  333 (393)
T d1sq9a_         260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG------WDGKLRFWDVKTKERITTLNMHCDD  333 (393)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE------TTSEEEEEETTTTEEEEEEECCGGG
T ss_pred             ecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC------CCCEEEEEECCCCCEEEEECCcCCc
Confidence            99999998877764             33  688999999999999999      4999999998 56666  4456555


Q ss_pred             eE----EEEEecCCCCCCC
Q 020756          214 LF----QAEWKPVSPDKFG  228 (321)
Q Consensus       214 ~~----~~~w~P~~~~~~~  228 (321)
                      |.    .+.|.|+...+..
T Consensus       334 v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         334 IEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             CSSGGGCCCBCTTSCBCSS
T ss_pred             ccCCccEEEECCCCCEEEE
Confidence            43    3567776665554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=1.1e-16  Score=143.20  Aligned_cols=196  Identities=8%  Similarity=-0.056  Sum_probs=141.0

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      .+.|.||++..   +. +.+. .+......+.|||||+.|++....          ....|+.++..++... ....+.+
T Consensus        23 ~g~v~v~d~~~---~~-~~~~-~~~~~v~~~~~spDg~~l~~~~~~----------~g~~v~v~d~~~~~~~-~~~~~~~   86 (360)
T d1k32a3          23 RGQAFIQDVSG---TY-VLKV-PEPLRIRYVRRGGDTKVAFIHGTR----------EGDFLGIYDYRTGKAE-KFEENLG   86 (360)
T ss_dssp             TTEEEEECTTS---SB-EEEC-SCCSCEEEEEECSSSEEEEEEEET----------TEEEEEEEETTTCCEE-ECCCCCC
T ss_pred             CCeEEEEECCC---Cc-EEEc-cCCCCEEEEEECCCCCEEEEEEcC----------CCCEEEEEECCCCcEE-EeeCCCc
Confidence            46889998866   33 3333 356778899999999999876321          1224777787776443 3346889


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe--CCcCeeeEEEcCCCCeEEEEccC-------CCCCcEEEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GSGPYNTVRWNPKGKFLCLAGFG-------NLPGDMAFW  153 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~--~~~~~~~~~~sPdG~~l~~~g~~-------n~~g~i~iw  153 (321)
                      .|.+++|+|||++|++.  ..++.+.+|++.+... ..+  +...+.+++|+|||++|+++...       ..++.+++|
T Consensus        87 ~v~~~~~spdg~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVA--NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             SEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             eEEeeeeccccccccee--ccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            99999999999999986  5578999999965433 333  67788899999999999986431       235679999


Q ss_pred             ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCC
Q 020756          154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVS  223 (321)
Q Consensus       154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~  223 (321)
                      |+.+++........ ....+.|||||++|++++.      ++.+.+|+.....+.......++.+.+++..
T Consensus       165 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  229 (360)
T d1k32a3         165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  229 (360)
T ss_dssp             ETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES------CCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             ccccCceeeecccccccccccccCCCCEEEEEeC------CCceEcccccccceeeccccceEEEecccCc
Confidence            99998776665544 6777899999999999984      8889999875433322233344455554443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=2.1e-16  Score=138.85  Aligned_cols=199  Identities=8%  Similarity=0.047  Sum_probs=142.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeee-cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc---eeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH---EGLV   77 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~-~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~---~~~v   77 (321)
                      |.++.|+||++.+   ++.+.... .+...+..+.|+|+|+.+.+.             ....+.+++..+..   ...+
T Consensus        31 s~Dg~v~vWd~~~---~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~-------------~d~~v~~~~~~~~~~~~~~~~   94 (299)
T d1nr0a2          31 DAEGHINSWDIST---GISNRVFPDVHATMITGIKTTSKGDLFTVS-------------WDDHLKVVPAGGSGVDSSKAV   94 (299)
T ss_dssp             ETTSCEEEEETTT---CCEEECSSCSCSSCEEEEEECTTSCEEEEE-------------TTTEEEEECSSSSSSCTTSCC
T ss_pred             cCCCeEEEEECCC---CcEEEEEcCCCCCcEEEEEeeccceeeccc-------------ceeeEEEeccCCccccccccc
Confidence            4678999999988   66665443 345567789999999855432             11224455543321   1122


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ...+...+.++.|+|+|+.+++.   .+..+.+|+... ...........++.|+|++++|++++   .++.|.+||+++
T Consensus        95 ~~~~~~~~~~~~~s~~g~~~~~~---~~~~i~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~~~d~~~  167 (299)
T d1nr0a2          95 ANKLSSQPLGLAVSADGDIAVAA---CYKHIAIYSHGK-LTEVPISYNSSCVALSNDKQFVAVGG---QDSKVHVYKLSG  167 (299)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEE---ESSEEEEEETTE-EEEEECSSCEEEEEECTTSCEEEEEE---TTSEEEEEEEET
T ss_pred             ccccccccccccccccccccccc---cccccccccccc-cccccccccccccccccccccccccc---cccccccccccc
Confidence            22356788999999999977763   245899998643 22233456778899999999999998   899999999988


Q ss_pred             CeEEE--eeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee-----EEeccCceEEEEEecCCCCCCC
Q 020756          158 GKQLG--TTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF-----FKKMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       158 ~~~i~--~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l-----~~~~~~~~~~~~w~P~~~~~~~  228 (321)
                      ++...  ...+. .++.++|+|+|++|++++.      |+.+++||+. +..+     ...|...+..++|+|+...+++
T Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         168 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ------SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             TEEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccceEE
Confidence            75432  33333 7899999999999999984      8999999984 3333     3345678999999999987775


Q ss_pred             C
Q 020756          229 D  229 (321)
Q Consensus       229 ~  229 (321)
                      .
T Consensus       242 g  242 (299)
T d1nr0a2         242 G  242 (299)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=2.1e-16  Score=138.82  Aligned_cols=199  Identities=13%  Similarity=0.143  Sum_probs=137.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |..+.|++|++.....................+.|+++|+.++...             ...+.+++...    ...+..
T Consensus        73 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-------------~~~i~~~~~~~----~~~~~~  135 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-------------YKHIAIYSHGK----LTEVPI  135 (299)
T ss_dssp             ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-------------SSEEEEEETTE----EEEEEC
T ss_pred             cceeeEEEeccCCccccccccccccccccccccccccccccccccc-------------ccccccccccc----cccccc
Confidence            4567899999876221122222233345667889999999776542             11233333221    222234


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE---Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~---~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                      ...+..++|+|+++.|++  +..++.+.+||++.....   .+ |...+.++.|+|+|++|++++   .++.|++||+.+
T Consensus       136 ~~~~~~~~~s~~~~~l~~--g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~~~~~~  210 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAV--GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD---QSRKVIPYSVAN  210 (299)
T ss_dssp             SSCEEEEEECTTSCEEEE--EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEEGGG
T ss_pred             cccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccc
Confidence            567889999999999888  467899999999655332   22 788999999999999999998   889999999988


Q ss_pred             CeEEEe---eeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-c--eeEE---eccCceEEEEEecCCCCC
Q 020756          158 GKQLGT---TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-S--LFFK---KMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       158 ~~~i~~---~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~--~l~~---~~~~~~~~~~w~P~~~~~  226 (321)
                      +..+..   +..|  .+++++|+|+|++|++++.      |+.++|||+.. .  .+..   .+...+..+.|.+ ...+
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l  283 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTI  283 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTEE
T ss_pred             cccccccccccccccccccccccccccceEEEcC------CCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-CCEE
Confidence            755433   3333  6889999999999999994      99999999853 2  1221   1334577777755 4455


Q ss_pred             CCC
Q 020756          227 FGD  229 (321)
Q Consensus       227 ~~~  229 (321)
                      ++.
T Consensus       284 ~s~  286 (299)
T d1nr0a2         284 VSA  286 (299)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=7.9e-16  Score=139.52  Aligned_cols=202  Identities=14%  Similarity=0.166  Sum_probs=145.7

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeec------------------ccCccceEEeCCCCCeeEEEEEecccCCCceeeccee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSF------------------FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK   63 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~------------------f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~   63 (321)
                      |..+.|+||++.+   ++.+.....                  ....+..+.|+|+|++|+... .  |       |  .
T Consensus        80 g~d~~i~iW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~-~--d-------g--~  144 (388)
T d1erja_          80 GCNKTTQVYRVSD---GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA-E--D-------R--L  144 (388)
T ss_dssp             ECBSCEEEEETTT---CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE-T--T-------S--C
T ss_pred             EeCCeEEEEEecc---cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc-c--c-------c--c
Confidence            4578999999987   455443322                  223356799999999987642 1  1       2  2


Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-e-CCcCeeeEEEcC-CCCeEEE
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L-GSGPYNTVRWNP-KGKFLCL  140 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~-~~~~~~~~~~sP-dG~~l~~  140 (321)
                      +.+++............|...|.++.|++++..+++.  ..++.+.+||.+...... . +.....++.|+| +|++|++
T Consensus       145 v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  222 (388)
T d1erja_         145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG--SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA  222 (388)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccceeeeeeeccccccccccccccccccccccCCCCCeEEE
Confidence            4555655554444445588999999999999988884  668899999997653332 2 455555555555 8899999


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeC-------C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-------
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRA-------E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-------  204 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~-------~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-------  204 (321)
                      ++   .++.|++||+.++..+..+..       |  .+..++|+|+|++|++++.      |+.++|||+...       
T Consensus       223 ~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~  293 (388)
T d1erja_         223 GS---LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL------DRSVKLWNLQNANNKSDSK  293 (388)
T ss_dssp             EE---TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET------TSEEEEEEC----------
T ss_pred             Ec---CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC------CCcEEEEeccCCccccccc
Confidence            98   889999999998877665432       2  5788999999999999995      999999998421       


Q ss_pred             ------ee--EEeccCceEEEEEecCCCCCCCC
Q 020756          205 ------LF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       205 ------~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                            .+  ...+...+..+.|+|++..+++.
T Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg  326 (388)
T d1erja_         294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG  326 (388)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred             cccccceeeecccccceEEEEEECCCCCEEEEE
Confidence                  11  33355688999999998887764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=7.8e-16  Score=139.56  Aligned_cols=193  Identities=11%  Similarity=0.197  Sum_probs=140.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      +..+.|+||++..   ++.+.....+......+.|++++..++...            ....+..++..... ......+
T Consensus       140 ~~dg~v~i~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~------------~~~~i~~~d~~~~~-~~~~~~~  203 (388)
T d1erja_         140 AEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSGS------------GDRTVRIWDLRTGQ-CSLTLSI  203 (388)
T ss_dssp             ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEEE------------TTSEEEEEETTTTE-EEEEEEC
T ss_pred             ccccccccccccc---cccccccccccccccccccccccccccccc------------cceeeeeeeccccc-ccccccc
Confidence            3568899999988   677777777788888999999999887642            11235555655543 3333334


Q ss_pred             CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCc-eeEEe---------CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756           82 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  150 (321)
Q Consensus        82 ~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i  150 (321)
                      ......+.|+| ++..|++  +..++.+.+||.... .+..+         |...+.++.|+|+|++|++++   .++.|
T Consensus       204 ~~~~~~~~~~~~~~~~l~~--~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~d~~i  278 (388)
T d1erja_         204 EDGVTTVAVSPGDGKYIAA--GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---LDRSV  278 (388)
T ss_dssp             SSCEEEEEECSTTCCEEEE--EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE---TTSEE
T ss_pred             ccccccccccCCCCCeEEE--EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE---CCCcE
Confidence            55566666665 7777777  466889999998543 33332         467899999999999999998   89999


Q ss_pred             EEEECCCCeE------------EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCc
Q 020756          151 AFWDYVDGKQ------------LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDK  213 (321)
Q Consensus       151 ~iwD~~~~~~------------i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~  213 (321)
                      .+||+.++..            ......|  .++.++|+|+|++|++++.      |+.|+|||+ +|+++  +..|...
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------dg~i~vwd~~~~~~~~~l~~H~~~  352 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQGHRNS  352 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC------CCEEEEEECCCCcEEEEEeCCCCC
Confidence            9999976532            2222233  6788999999999999994      999999998 46666  5567888


Q ss_pred             eEEEEEec
Q 020756          214 LFQAEWKP  221 (321)
Q Consensus       214 ~~~~~w~P  221 (321)
                      +..+.|.+
T Consensus       353 V~~~~~~~  360 (388)
T d1erja_         353 VISVAVAN  360 (388)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEec
Confidence            98888754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.4e-15  Score=135.03  Aligned_cols=173  Identities=10%  Similarity=0.066  Sum_probs=121.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeee--c
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVP--L   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~--l   79 (321)
                      ....+++|....   ++.+....-.......+.|+|++.++++.+..|         |.  +.+++..... ...+.  .
T Consensus       137 ~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d---------~~--v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         137 RDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD---------GS--VVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             SSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETT---------TE--EEEEETTTBEEEEEECSSS
T ss_pred             ccceEEEEeecc---cccceeeeecccccccccccccccceEEEeecc---------cc--cccccccccccceeccccc
Confidence            456688888877   677777766666778899999999877754322         22  3344433221 11111  2


Q ss_pred             CCCCCeEEEEECcCC-CEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEc---CCCCeEEEEccCCCCCcEEE
Q 020756           80 RKEGPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWN---PKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g-~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~s---PdG~~l~~~g~~n~~g~i~i  152 (321)
                      .+...|.+++|+|++ ..|++  +..|+.|.+||++. ..+..+  |..++..+.|+   |+|++|++++   .|+.|+|
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s--~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s---~D~~i~i  277 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVIT--VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG---ADATIRV  277 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEE--EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE---TTSEEEE
T ss_pred             CCCCccEEeeeccccceeccc--cccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe---CCCeEEE
Confidence            367889999999975 55555  46689999999854 455666  56666666665   7899999999   8999999


Q ss_pred             EECCCCeEEEeeeCC--C--ee--eEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          153 WDYVDGKQLGTTRAE--C--SV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       153 wD~~~~~~i~~~~~~--~--~~--~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      ||+++++++..+..+  .  ..  .+.|++++ +|++++.      |+.|+|||+
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~------dg~i~vwdl  325 (325)
T d1pgua1         278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSL------DGTLNFYEL  325 (325)
T ss_dssp             EETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEET------TSCEEEEET
T ss_pred             EECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEEC------CCEEEEEEC
Confidence            999999998877654  2  22  34555544 6777773      999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=6.2e-15  Score=128.58  Aligned_cols=110  Identities=14%  Similarity=0.230  Sum_probs=90.3

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-E---eCCcCeeeEEEcCCC----------CeEEEEccCC
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-E---LGSGPYNTVRWNPKG----------KFLCLAGFGN  145 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~---~~~~~~~~~~~sPdG----------~~l~~~g~~n  145 (321)
                      .+.+++.+++|+|+|.+|++  +..++.+.+||+...... .   .|...++++.|+|++          .+|++++   
T Consensus       160 ~~~~~v~~~~~s~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs---  234 (287)
T d1pgua2         160 PLRAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS---  234 (287)
T ss_dssp             CCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE---
T ss_pred             ccCCceeEEEeccCcccccc--ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec---
Confidence            46789999999999999988  467899999999655432 2   378899999999864          5788888   


Q ss_pred             CCCcEEEEECCC-CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          146 LPGDMAFWDYVD-GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       146 ~~g~i~iwD~~~-~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      .|+.|+|||+++ .+.+..+.+|  .++.+.|+|+++ |++++.      |+.|+||++
T Consensus       235 ~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~------D~~v~iW~i  286 (287)
T d1pgua2         235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA------DACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEET------TSCEEEEEE
T ss_pred             CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEEC------CCeEEEEEE
Confidence            899999999876 4666666665  789999999975 777774      999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=4.9e-14  Score=122.74  Aligned_cols=131  Identities=14%  Similarity=0.143  Sum_probs=99.1

Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756           88 VQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  163 (321)
Q Consensus        88 ~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~  163 (321)
                      ..++|++..+++. +..++.+.+|++... ....+   +...+.++.|+|+|.+|++++   .+|.|++||+.+++.+..
T Consensus       124 ~~~~~~~~~~~v~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         124 SAVSLSQNYVAVG-LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD---VMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             EEEEECSSEEEEE-ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEC
T ss_pred             eeeeccCcceeee-ccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc---ccccccceeecccccccc
Confidence            4667888888875 334458999998543 23333   567899999999999999998   899999999999876653


Q ss_pred             -eeCC--CeeeEEEccC----------CCEEEEEEcCCceeecCcEEEEeec--Ccee--EEeccCceEEEEEecCCCCC
Q 020756          164 -TRAE--CSVTSEWSPD----------GRYFMTATTAPRLQIDNGIKIFHHN--GSLF--FKKMFDKLFQAEWKPVSPDK  226 (321)
Q Consensus       164 -~~~~--~~~~~~wSpd----------G~~l~t~~s~~rl~~d~~v~iw~~~--g~~l--~~~~~~~~~~~~w~P~~~~~  226 (321)
                       +..|  .+.+++|+|+          +.+|++++.      |+.++|||+.  ++++  ...|...+..+.|+|+. .+
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~------D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l  272 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL------DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL  272 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEET------TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EE
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecC------CCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EE
Confidence             3444  6888999874          568888884      9999999984  3333  23577899999999975 35


Q ss_pred             CCC
Q 020756          227 FGD  229 (321)
Q Consensus       227 ~~~  229 (321)
                      ++.
T Consensus       273 ~s~  275 (287)
T d1pgua2         273 VSS  275 (287)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=7.9e-14  Score=122.92  Aligned_cols=145  Identities=14%  Similarity=0.171  Sum_probs=110.4

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEE
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCL  140 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~  140 (321)
                      +..++............+...+..+.|+|++..+++.  ..++.+++||+.. ..+..+  |...+.++.|+|  ++|++
T Consensus       183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~  258 (355)
T d1nexb2         183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA--SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVS  258 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE--ETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEE
T ss_pred             eeeeecccccceeeeeccccccccccccccceeeecc--cccceEEeeecccccccccccccccccccccccc--ceeee
Confidence            5555655543333344467889999999999998884  6688999999964 445555  678899999874  78999


Q ss_pred             EccCCCCCcEEEEECCCCeEEEeeeCCCeee-EEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeE---EeccCceE
Q 020756          141 AGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF---KKMFDKLF  215 (321)
Q Consensus       141 ~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~-~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~---~~~~~~~~  215 (321)
                      ++   .||.|++||++++..........+.. ..+++++++|++++       |+.|+|||+ +|+++.   ..|...|.
T Consensus       259 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-------d~~i~vwd~~tg~~~~~~~~~~~~~V~  328 (355)
T d1nexb2         259 AA---ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-------ENQFNIYNLRSGKLVHANILKDADQIW  328 (355)
T ss_dssp             EC---TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-------TTEEEEEETTTCCBCCSCTTTTCSEEE
T ss_pred             ee---cccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-------CCEEEEEECCCCCEEEEEecCCCCCEE
Confidence            88   89999999999887766665554444 46788888877766       899999998 467663   34667899


Q ss_pred             EEEEecC
Q 020756          216 QAEWKPV  222 (321)
Q Consensus       216 ~~~w~P~  222 (321)
                      .++|+|+
T Consensus       329 ~v~~~~~  335 (355)
T d1nexb2         329 SVNFKGK  335 (355)
T ss_dssp             EEEEETT
T ss_pred             EEEEcCC
Confidence            9999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.2e-14  Score=131.71  Aligned_cols=103  Identities=20%  Similarity=0.296  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeCCC-ceeEEe---------------CCcCeeeEEEcCCCCeEEEEc
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKC-RPILEL---------------GSGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~-~~~~~~---------------~~~~~~~~~~sPdG~~l~~~g  142 (321)
                      .|..+|.+++|+|||++|++...+. .+.++|||+.. ..+..+               |...|++++|+|||++|++++
T Consensus       229 ~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             cccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence            4789999999999999998863221 23699999853 333332               567899999999999999999


Q ss_pred             cCCCCCcEEEEECCCCeEEEeeeCC--Cee----eEEEccCCCEEEEEE
Q 020756          143 FGNLPGDMAFWDYVDGKQLGTTRAE--CSV----TSEWSPDGRYFMTAT  185 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~~~i~~~~~~--~~~----~~~wSpdG~~l~t~~  185 (321)
                         .|+.|+|||+++++++.++.+|  .+.    .+.|+|+|..+++++
T Consensus       309 ---~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         309 ---WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             ---TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             ---CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence               9999999999999999999987  232    478999999876544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=8.9e-13  Score=113.89  Aligned_cols=200  Identities=13%  Similarity=0.122  Sum_probs=124.8

Q ss_pred             EEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEE
Q 020756            8 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD   87 (321)
Q Consensus         8 ~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~   87 (321)
                      .||-+...  +......+-.........|||||++|+++...    .     +...++.+...+....++. .+.+....
T Consensus        20 ~l~i~d~d--G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~----~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~   87 (269)
T d2hqsa1          20 ELRVSDYD--GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE----S-----GRSALVIQTLANGAVRQVA-SFPRHNGA   87 (269)
T ss_dssp             EEEEEETT--SCSCEEEEEESSCEEEEEECTTSSEEEEEECT----T-----SSCEEEEEETTTCCEEEEE-CCSSCEEE
T ss_pred             EEEEEcCC--CCCcEEEecCCCceeeeEECCCCCEEEEEEee----c-----cCcceeeeecccCceeEEe-eeeccccc
Confidence            34444332  34444444445666789999999999997421    1     2234677777776544444 56678889


Q ss_pred             EEECcCCCEEEEEEccCCC-eEEEE--------------------------------------------eCCCceeEEe-
Q 020756           88 VQWSYSGSEFAVVYGFMPA-SATIF--------------------------------------------NKKCRPILEL-  121 (321)
Q Consensus        88 ~~wsP~g~~l~~~~g~~~~-~i~i~--------------------------------------------d~~~~~~~~~-  121 (321)
                      ..|||+|+.++........ .+..+                                            ++.......+ 
T Consensus        88 ~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~  167 (269)
T d2hqsa1          88 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT  167 (269)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred             ceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee
Confidence            9999999999886432211 11111                                            1111111111 


Q ss_pred             -CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          122 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       122 -~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                       .........|+|+|+.|+.....+....|.++|...+...............|||||++|+..+..   +....+.+++
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~---~~~~~l~~~~  244 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ---GMGSVLNLVS  244 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE---TTEEEEEEEE
T ss_pred             cccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC---CCCcEEEEEE
Confidence             122334579999999999987555445677777776655444444466778999999999987741   1234678888


Q ss_pred             ecCceeEEe--ccCceEEEEEecC
Q 020756          201 HNGSLFFKK--MFDKLFQAEWKPV  222 (321)
Q Consensus       201 ~~g~~l~~~--~~~~~~~~~w~P~  222 (321)
                      ++|....+.  ....+...+|+|-
T Consensus       245 ~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         245 TDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             TTSCCEEECCCSSSEEEEEEECCC
T ss_pred             CCCCCEEEEeCCCCcEEeEEeCCC
Confidence            988766332  3346778899984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.2e-13  Score=121.63  Aligned_cols=123  Identities=15%  Similarity=0.153  Sum_probs=85.9

Q ss_pred             cCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-
Q 020756           92 YSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-  167 (321)
Q Consensus        92 P~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-  167 (321)
                      ++++.++.  +..++.+.+||+... .+..+  +...+..+.|+|++.++++++   .++.|++||+.++..+..+..| 
T Consensus       169 ~~~~~~~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~h~  243 (355)
T d1nexb2         169 GHGNIVVS--GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS---MDTTIRIWDLENGELMYTLQGHT  243 (355)
T ss_dssp             EETTEEEE--EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE---TTSCEEEEETTTCCEEEEECCCS
T ss_pred             cccceeee--ecccceeeeeecccccceeeeeccccccccccccccceeeeccc---ccceEEeeecccccccccccccc
Confidence            34444444  234455666665332 33333  455677899999999999998   8999999999999999988877 


Q ss_pred             -CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEeccCceEEEEEecCCCCCC
Q 020756          168 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       168 -~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~~~~~~~~~w~P~~~~~~  227 (321)
                       .+..+.|+  +++|++++.      |+.|+|||+. +...+..+...+..+.+.+....++
T Consensus       244 ~~v~~~~~~--~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAAA------DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             SCCCEEEEC--SSEEEEECT------TSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEE
T ss_pred             ccccccccc--cceeeeeec------ccccccccccccceecccccCCceEEEEEcCCCCEE
Confidence             56677775  578999984      9999999995 4455666666666655444333444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-12  Score=112.54  Aligned_cols=129  Identities=12%  Similarity=0.168  Sum_probs=95.8

Q ss_pred             EEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756           87 DVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  163 (321)
Q Consensus        87 ~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~  163 (321)
                      ...+++++.+|++  +..|+.|.+||+.. ..+..+  |...+.++.++  +++|++++   .++.|++||+...+....
T Consensus       180 ~~~~~~~~~~l~s--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s---~d~~i~iwd~~~~~~~~~  252 (342)
T d2ovrb2         180 VYSLQFDGIHVVS--GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN---ADSTVKIWDIKTGQCLQT  252 (342)
T ss_dssp             EEEEEECSSEEEE--EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE---TTSCEEEEETTTCCEEEE
T ss_pred             cccccCCCCEEEE--EeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEc---CCCEEEEEeccccccccc
Confidence            4455667888877  47789999999964 455555  56667766665  57999998   899999999998877776


Q ss_pred             eeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe-------ccCceEEEEEecCCCCCCC
Q 020756          164 TRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-------MFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       164 ~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~-------~~~~~~~~~w~P~~~~~~~  228 (321)
                      +..+   .....++++++.+|++++.      |+.|+|||+ +|+++...       +...|+.++|+|+...+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~s~s~------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         253 LQGPNKHQSAVTCLQFNKNFVITSSD------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             ECSTTSCSSCEEEEEECSSEEEEEET------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             ccccceeeeceeecccCCCeeEEEcC------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            6553   3344556667889999994      999999998 57766432       3457999999998755443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.53  E-value=7e-12  Score=108.57  Aligned_cols=202  Identities=10%  Similarity=0.090  Sum_probs=147.8

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|.||++.+   ++.+.+..+. .....+.|||||++|++...           +...|..++.... +....+...
T Consensus        10 ~~~~v~v~D~~t---~~~~~~i~~g-~~p~~va~spdG~~l~v~~~-----------~~~~i~v~d~~t~-~~~~~~~~~   73 (301)
T d1l0qa2          10 ESDNISVIDVTS---NKVTATIPVG-SNPMGAVISPDGTKVYVANA-----------HSNDVSIIDTATN-NVIATVPAG   73 (301)
T ss_dssp             TTTEEEEEETTT---TEEEEEEECS-SSEEEEEECTTSSEEEEEEG-----------GGTEEEEEETTTT-EEEEEEECS
T ss_pred             CCCEEEEEECCC---CeEEEEEECC-CCceEEEEeCCCCEEEEEEC-----------CCCEEEEEECCCC-ceeeeeecc
Confidence            457899999988   6777766654 34678999999999977531           2224677777554 233333344


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  160 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~  160 (321)
                      ..++.+.|+++|..+++. +..+..+.+|+.... ....+ +.....++.|+|+|+.+++++  +.++.+.+||..+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~--~~~~~~~~~~~~~~~~  150 (301)
T d1l0qa2          74 SSPQGVAVSPDGKQVYVT-NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTVTKAV  150 (301)
T ss_dssp             SSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEE
T ss_pred             cccccccccccccccccc-ccccceeeecccccceeeeeccccccceEEEeecCCCeeeeee--ccccceeeeeccccce
Confidence            567899999999988876 455679999999655 44444 566778999999999988776  2568899999999998


Q ss_pred             EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecCCCCCCC
Q 020756          161 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       161 i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~~~~~~~  228 (321)
                      +..+..+ ....+.|+||+++++++..     .+..+.+|+.....+..  ........+.|.+++..++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v  216 (301)
T d1l0qa2         151 INTVSVGRSPKGIAVTPDGTKVYVANF-----DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV  216 (301)
T ss_dssp             EEEEECCSSEEEEEECTTSSEEEEEET-----TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEE
T ss_pred             eeecccCCCceEEEeeccccceeeecc-----cccccccccccceeeeecccccCCcceeecccccccccc
Confidence            8887765 6788999999999999885     24567777776554422  23345678889988876653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.52  E-value=5.4e-12  Score=109.27  Aligned_cols=183  Identities=10%  Similarity=0.119  Sum_probs=129.4

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG   83 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~   83 (321)
                      ...+.+|+...   ++.+...... .....+.|+|+|..+++....           ...+..++.... .....+....
T Consensus        95 ~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~  158 (301)
T d1l0qa2          95 SSTLSVIDTTS---NTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTK-AVINTVSVGR  158 (301)
T ss_dssp             TTEEEEEETTT---TEEEEEEECS-SSEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTT-EEEEEEECCS
T ss_pred             cceeeeccccc---ceeeeecccc-ccceEEEeecCCCeeeeeecc-----------ccceeeeecccc-ceeeecccCC
Confidence            35677888777   5555544433 455678999999998775321           112444444443 2333344556


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  161 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i  161 (321)
                      .+..+.|+|++..+++.. .....+.+++.....+...  .......+.|+|+|+.+++++.+..++.|++||+.+++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVAN-FDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             SEEEEEECTTSSEEEEEE-TTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CceEEEeeccccceeeec-ccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            788999999999988863 3356788888765544433  3455678999999999988765555688999999999998


Q ss_pred             EeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE
Q 020756          162 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK  208 (321)
Q Consensus       162 ~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~  208 (321)
                      ..+..+ .+..++|||||++|+.+..     .++.|+|||+ +|+++..
T Consensus       238 ~~~~~~~~~~~va~spdg~~l~va~~-----~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         238 ARIPVGPDPAGIAVTPDGKKVYVALS-----FCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEET-----TTTEEEEEETTTTEEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCEEEEEEC-----CCCeEEEEECCCCeEEEE
Confidence            887765 7889999999999865554     4889999998 4555544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.8e-13  Score=115.39  Aligned_cols=170  Identities=8%  Similarity=0.070  Sum_probs=116.1

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE   82 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~   82 (321)
                      ..+.|++|++..   ...+......  ....+.++++|.+++... .|         |  .+.+++............|.
T Consensus       155 ~d~~i~~~d~~~---~~~~~~~~~~--~~~~~~~~~~~~~l~s~~-~d---------g--~i~~~d~~~~~~~~~~~~~~  217 (342)
T d2ovrb2         155 YDFMVKVWDPET---ETCLHTLQGH--TNRVYSLQFDGIHVVSGS-LD---------T--SIRVWDVETGNCIHTLTGHQ  217 (342)
T ss_dssp             TTSCEEEEEGGG---TEEEEEECCC--SSCEEEEEECSSEEEEEE-TT---------S--CEEEEETTTCCEEEEECCCC
T ss_pred             CCCeEEEeeccc---ceeeEEEcCc--ccccccccCCCCEEEEEe-CC---------C--eEEEeecccceeeeEecccc
Confidence            457788888877   4555443333  334455666777776542 11         2  25566665554444445678


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  156 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~  156 (321)
                      ..+.++.|++  ++|++  +..++.|++||+... ....+     +...+.++.|  ++++|++++   .||.|+|||++
T Consensus       218 ~~v~~~~~~~--~~l~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s---~Dg~i~iwd~~  288 (342)
T d2ovrb2         218 SLTSGMELKD--NILVS--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS---DDGTVKLWDLK  288 (342)
T ss_dssp             SCEEEEEEET--TEEEE--EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEE---TTSEEEEEETT
T ss_pred             cceeEEecCC--CEEEE--EcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEc---CCCEEEEEECC
Confidence            8888887765  57766  467899999998543 44444     2334444555  567999998   89999999999


Q ss_pred             CCeEEEeeeC-----C--CeeeEEEccCCCEEEEEEcCCceeecC----cEEEEeecCc
Q 020756          157 DGKQLGTTRA-----E--CSVTSEWSPDGRYFMTATTAPRLQIDN----GIKIFHHNGS  204 (321)
Q Consensus       157 ~~~~i~~~~~-----~--~~~~~~wSpdG~~l~t~~s~~rl~~d~----~v~iw~~~g~  204 (321)
                      +++++..+..     +  .++.++|+|+|.+|++++.      |+    .+++||++-+
T Consensus       289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~------dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR------NGTEETKLLVLDFDVD  341 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS------SSSSCCEEEEEECCCC
T ss_pred             CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC------CCCCeeEEEEEeCCCC
Confidence            9988877642     2  4788999999999999884      54    4999998643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=3.3e-12  Score=119.37  Aligned_cols=177  Identities=11%  Similarity=0.068  Sum_probs=125.0

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce---eeeec-
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPL-   79 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~---~~v~l-   79 (321)
                      .+.|.||+..+   ++.+....... ....+.|||||++|++. +.|         |  .+.+++......   ..+.. 
T Consensus        41 ~g~v~v~D~~t---~~v~~~~~~g~-~~~~v~fSpDG~~l~~~-s~d---------g--~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          41 AGQIALIDGST---YEIKTVLDTGY-AVHISRLSASGRYLFVI-GRD---------G--KVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             TTEEEEEETTT---CCEEEEEECSS-CEEEEEECTTSCEEEEE-ETT---------S--EEEEEETTSSSCCEEEEEECC
T ss_pred             CCEEEEEECCC---CcEEEEEeCCC-CeeEEEECCCCCEEEEE-cCC---------C--CEEEEEeeCCCceEEEEEecC
Confidence            67999999999   78898888764 57799999999999764 211         2  255666543321   12222 


Q ss_pred             -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-------------CCcCeeeEEEcCCCCeEEEEccC
Q 020756           80 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-------------GSGPYNTVRWNPKGKFLCLAGFG  144 (321)
Q Consensus        80 -~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-------------~~~~~~~~~~sPdG~~l~~~g~~  144 (321)
                       .+.+.+.+..|||||++|++. +..++.+.|||.... .+..+             .......+.++|+|..++++.. 
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs-~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~-  182 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAG-AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-  182 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEE-EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-
T ss_pred             CCCCCeEEecccCCCCCEEEEE-cCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc-
Confidence             234455566778899988765 455889999998543 33332             2344567899999998877652 


Q ss_pred             CCCCcEEEEECCCCeEE--EeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          145 NLPGDMAFWDYVDGKQL--GTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       145 n~~g~i~iwD~~~~~~i--~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                       .++.|.+||..+.+..  ..+.. .....+.|+|||+++++++.     .++.+.+++....
T Consensus       183 -~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~-----~~~~v~v~d~~~~  239 (432)
T d1qksa2         183 -ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEG  239 (432)
T ss_dssp             -TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTT
T ss_pred             -cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc-----ccceEEEeecccc
Confidence             5689999999887543  34433 36778999999999999986     4778888888544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=3.1e-12  Score=111.36  Aligned_cols=205  Identities=9%  Similarity=0.030  Sum_probs=122.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-C
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K   81 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~   81 (321)
                      .++.|+||++........+....-++..+..+.|++++..+++....|         |.  +.+++............ +
T Consensus        31 ~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d---------~~--v~~w~~~~~~~~~~~~~~~   99 (342)
T d1yfqa_          31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ---------GE--ILKVDLIGSPSFQALTNNE   99 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT---------SC--EEEECSSSSSSEEECBSCC
T ss_pred             CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc---------cc--eeeeecccccccccccccc
Confidence            578999999987311112222223577888999999887766654322         22  44444444322222222 3


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  152 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i  152 (321)
                      ........+.+++..++..  ..++.+.+||++..     .....    .......+.+.+++..++.++   .++.|.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~  174 (342)
T d1yfqa_         100 ANLGICRICKYGDDKLIAA--SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM---NNSQVQW  174 (342)
T ss_dssp             CCSCEEEEEEETTTEEEEE--ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE---STTEEEE
T ss_pred             ccccccccccccccccccc--ccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec---CCCcEEE
Confidence            3444556667777777774  56789999987321     11111    122334456666777777766   6677777


Q ss_pred             EECCCCeE-------------------------------------------------------EEe------eeCC--Ce
Q 020756          153 WDYVDGKQ-------------------------------------------------------LGT------TRAE--CS  169 (321)
Q Consensus       153 wD~~~~~~-------------------------------------------------------i~~------~~~~--~~  169 (321)
                      ||+...+.                                                       ...      ...+  .+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  254 (342)
T d1yfqa_         175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV  254 (342)
T ss_dssp             EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCE
T ss_pred             EecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccc
Confidence            77653210                                                       000      0011  35


Q ss_pred             eeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEe-ccCceEEEEEecCCCCCCCC
Q 020756          170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .+++|||+|++|++++.      |+.|+|||+. ++.+... .......++|+|++..++..
T Consensus       255 ~~l~~sp~~~~lasg~~------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         255 NSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA  310 (342)
T ss_dssp             EEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred             eeEEecCCccEEEEECC------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEE
Confidence            67899999999999995      9999999995 4455433 23455567788887766644

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=4.2e-11  Score=104.92  Aligned_cols=186  Identities=9%  Similarity=0.007  Sum_probs=123.3

Q ss_pred             CCceEEEEEcCCcCCCCceeeeeccc-----CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV   77 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~-----~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v   77 (321)
                      ..+.|.+|++.+   ++.+.......     .....+.|+|+|+++++..............+...+..++.... ....
T Consensus        54 ~~~~v~v~D~~t---~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~  129 (337)
T d1pbyb_          54 KSESLVKIDLVT---GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRK  129 (337)
T ss_dssp             TTTEEEEEETTT---CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEE
T ss_pred             CCCeEEEEECCC---CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC-eEEE
Confidence            467899999998   67776555432     23457899999999988643322222222223444556666554 2333


Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----------------------------------------
Q 020756           78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----------------------------------------  116 (321)
Q Consensus        78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----------------------------------------  116 (321)
                      .+.....++.+.|+|||+++++.  ..  .+.+||....                                         
T Consensus       130 ~~~~~~~~~~~~~s~dg~~l~~~--~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (337)
T d1pbyb_         130 AFEAPRQITMLAWARDGSKLYGL--GR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA  205 (337)
T ss_dssp             EEECCSSCCCEEECTTSSCEEEE--SS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred             eccccCCceEEEEcCCCCEEEEE--cC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeee
Confidence            33455678899999999998875  22  2344443210                                         


Q ss_pred             ------------------------ee--EEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-
Q 020756          117 ------------------------PI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-  167 (321)
Q Consensus       117 ------------------------~~--~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-  167 (321)
                                              .+  ..+  +......+.++|++.+++...     +.|.+||+.+++.+..+... 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~~~~  280 (337)
T d1pbyb_         206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPH  280 (337)
T ss_dssp             BTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSS
T ss_pred             eeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-----ccEEEEECCCCcEEEEEcCCC
Confidence                                    00  001  222344567778888776654     78999999999998887765 


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeE
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFF  207 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~  207 (321)
                      .+.+++|||||++|++++      .++.|.|||.. ++.+.
T Consensus       281 ~~~~~~~s~dG~~l~v~~------~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         281 SYYSVNVSTDGSTVWLGG------ALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             CCCEEEECTTSCEEEEES------BSSEEEEEETTTCCEEE
T ss_pred             CEEEEEECCCCCEEEEEe------CCCcEEEEECCCCcEEE
Confidence            678899999999999887      48999999984 55553

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.9e-11  Score=101.06  Aligned_cols=205  Identities=10%  Similarity=0.137  Sum_probs=131.2

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecc-----c-CCCce------------------
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-----D-KTNQS------------------   57 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~-----d-~t~~s------------------   57 (321)
                      +.++.|+||++.+   ++++.....++..+..+.|+  +++|+.. +.|.     + ..+..                  
T Consensus        32 s~Dg~i~vWd~~~---~~~~~~l~~H~~~V~~v~~~--~~~l~s~-s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (293)
T d1p22a2          32 LRDNTIKIWDKNT---LECKRILTGHTGSVLCLQYD--ERVIITG-SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN  105 (293)
T ss_dssp             ESSSCEEEEESSS---CCEEEEECCCSSCEEEEECC--SSEEEEE-ETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred             eCCCeEEEEECCC---CcEEEEEecCCCCEeeeecc--cceeecc-cccccccccccccccccccccccccccccccccc
Confidence            4678999999988   78888877777788788774  5665543 2220     0 00000                  


Q ss_pred             -----eecceeEEEEEcCCCce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCe
Q 020756           58 -----YYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPY  126 (321)
Q Consensus        58 -----~~g~~~l~~l~~~g~~~---~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~  126 (321)
                           ......+.+++......   ......+...|..+.+.++  .+++.  ..++.+.+||++. +.+..+  +...+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~--s~d~~i~~~d~~~~~~~~~~~~~~~~v  181 (293)
T d1p22a2         106 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSA--SGDRTIKVWNTSTCEFVRTLNGHKRGI  181 (293)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--EEEEE--ETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cceeecccccceeEeeccccccccccccccccccccccceeccc--ccccc--cCCCceeeecCCCCcEEEEEccccccc
Confidence                 00111111112111100   1111235666766666543  44443  4578999999954 455566  44555


Q ss_pred             eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---
Q 020756          127 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---  203 (321)
Q Consensus       127 ~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---  203 (321)
                      ..+.+  ++.+|++++   .|+.|++||+++.+.+..+..+......+++++.+|++++.      |+.++|||+..   
T Consensus       182 ~~~~~--~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~  250 (293)
T d1p22a2         182 ACLQY--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY------DGKIKVWDLVAALD  250 (293)
T ss_dssp             EEEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEET------TSCEEEEEHHHHTS
T ss_pred             ccccC--CCCeEEEec---CCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcC------CCEEEEEECCCCcc
Confidence            55555  467899988   89999999999999998888775555578899999999994      99999999732   


Q ss_pred             -------cee--EEeccCceEEEEEecCCCCCCCC
Q 020756          204 -------SLF--FKKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       204 -------~~l--~~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                             ..+  +..|...|+.++|++  ..+++.
T Consensus       251 ~~~~~~~~~~~~~~~H~~~V~~v~~d~--~~l~s~  283 (293)
T d1p22a2         251 PRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSS  283 (293)
T ss_dssp             TTSCTTTTEEEEECCCSSCCCCEEECS--SCEEEC
T ss_pred             ccccCCceeeEEecCCCCCEEEEEEcC--CEEEEE
Confidence                   122  345777888898854  445543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=3.3e-12  Score=119.63  Aligned_cols=142  Identities=18%  Similarity=0.225  Sum_probs=103.1

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-----CCCCeEEEEECcCCCEEEEEE
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVY  101 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-----~~~~v~~~~wsP~g~~l~~~~  101 (321)
                      |......+.|.++|+++..              ....+++++..++....+.-.     +...|.++.|||||++|++.+
T Consensus        15 ~~~~~~~~~W~~d~~~~~~--------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~   80 (470)
T d2bgra1          15 YRLKLYSLRWISDHEYLYK--------------QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEY   80 (470)
T ss_dssp             SCCCCCCCEECSSSEEEEE--------------SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEE
T ss_pred             eeccccCCEeCCCCEEEEE--------------cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEE
Confidence            5566778999999987642              112367788776644433211     346799999999999999875


Q ss_pred             cc-------CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-----
Q 020756          102 GF-------MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----  167 (321)
Q Consensus       102 g~-------~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-----  167 (321)
                      ..       ..+.+.|||+.+..+..+  +...+..+.|||||+.|++..    ++++++|+..+++.+......     
T Consensus        81 ~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~----~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          81 NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW----NNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE----TTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             CCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee----cccceEEECCCCceeeeeeccCCCcc
Confidence            42       235788999988877666  567788999999999999974    578999999888655433221     


Q ss_pred             ---------------CeeeEEEccCCCEEEEEEc
Q 020756          168 ---------------CSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       168 ---------------~~~~~~wSpdG~~l~t~~s  186 (321)
                                     ....+.|||||++|++...
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             cccccceeeeeeecCCccccEECCCCCccceeEe
Confidence                           1234779999999999863

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=4.1e-11  Score=105.25  Aligned_cols=207  Identities=10%  Similarity=0.095  Sum_probs=126.0

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecc--cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-ec
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f--~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-~l   79 (321)
                      ..+.|+||++..   ...+..+..+  ......+.|||||++|++....+         +...+|.++..+.....+ ..
T Consensus        12 ~~~~I~v~~~~~---~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d---------~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_          12 ESQQIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE---------FRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             GGTEEEEEEECT---TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT---------TEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCcEEEEEEcC---CCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCC---------CeEEEEEEeCCCCcEEEeeec
Confidence            357899999987   4444444433  35567999999999998753211         222345554443322222 22


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE---E--eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756           80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---E--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  154 (321)
Q Consensus        80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~---~--~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD  154 (321)
                      .....+..++|+|||+++++. +..+..+.+|+.......   .  .+...+..+.++|||++++.++..  +..|.+|+
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~--~~~i~~~~  156 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVG-SYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK--QDRICLFT  156 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEE-ETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--GTEEEEEE
T ss_pred             ccCCCceEEEEcCCCCEEeec-ccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc--cceeeEEE
Confidence            244556789999999999886 445678888887433221   1  145567788999999988887632  35677776


Q ss_pred             CCCCeEEE-----------------------------------------------------eee---C-----CCeeeEE
Q 020756          155 YVDGKQLG-----------------------------------------------------TTR---A-----ECSVTSE  173 (321)
Q Consensus       155 ~~~~~~i~-----------------------------------------------------~~~---~-----~~~~~~~  173 (321)
                      ........                                                     ...   .     .....+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            54321000                                                     000   0     0122356


Q ss_pred             EccCCCEEEEEEcCCceeecCcEEEEeec--Ccee-EE---eccCceEEEEEecCCCCCCCC
Q 020756          174 WSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF-FK---KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l-~~---~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      +++||++++.+..     .++.+.+|++.  +..+ ..   ........++|+|++..++..
T Consensus       237 ~s~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va  293 (333)
T d1ri6a_         237 ITPDGRHLYACDR-----TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA  293 (333)
T ss_dssp             ECTTSSEEEEEET-----TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred             EecccCceeeecc-----cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEE
Confidence            7788877776664     36778888874  2222 11   122356788999999987754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=1.9e-10  Score=100.65  Aligned_cols=201  Identities=11%  Similarity=0.091  Sum_probs=132.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeeccc--CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeee
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVP   78 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~--~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~   78 (321)
                      +.++.|.||++.+   .+.+.......  .....+.++|||+++++...           ....|+.++...... ..+.
T Consensus         8 ~~d~~v~v~D~~s---~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~-----------~~~~v~v~D~~t~~~~~~~~   73 (337)
T d1pbyb_           8 ARPDKLVVIDTEK---MAVDKVITIADAGPTPMVPMVAPGGRIAYATVN-----------KSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             ETTTEEEEEETTT---TEEEEEEECTTCTTCCCCEEECTTSSEEEEEET-----------TTTEEEEEETTTCCEEEEEE
T ss_pred             cCCCEEEEEECCC---CeEEEEEECCCCCCCccEEEECCCCCEEEEEEC-----------CCCeEEEEECCCCcEEEEEe
Confidence            4578999999999   67777766532  34568999999999887521           112366777654422 2232


Q ss_pred             cCC----CCCeEEEEECcCCCEEEEEEcc----------CCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEc
Q 020756           79 LRK----EGPVHDVQWSYSGSEFAVVYGF----------MPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        79 l~~----~~~v~~~~wsP~g~~l~~~~g~----------~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g  142 (321)
                      ...    ...+..++|+|+|+++++....          .+..+.+||.... .+..+ ....+..+.|+|||+++++++
T Consensus        74 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            221    2245579999999998876321          3567889998654 34444 456678899999999999876


Q ss_pred             cCCCCCcEEEEECCCCeEEEeeeC--------------------------------------------------------
Q 020756          143 FGNLPGDMAFWDYVDGKQLGTTRA--------------------------------------------------------  166 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~~~i~~~~~--------------------------------------------------------  166 (321)
                           +.+.+||..+++.+..+..                                                        
T Consensus       154 -----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (337)
T d1pbyb_         154 -----RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             -----SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             -----CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC
Confidence                 4566777766544333211                                                        


Q ss_pred             ------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEe-ccCceEEEEEecCCCCCCCC
Q 020756          167 ------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       167 ------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                                  .....+.++|++.+++.+        ++.+++||+. ++.+... ....+..+.|+|++..++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~  297 (337)
T d1pbyb_         229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             CcEEEEEecCCCcceEEEEecccceEEEEc--------cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEE
Confidence                        022234566666655422        6789999995 4555433 34568899999999988754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.34  E-value=2.2e-11  Score=113.65  Aligned_cols=157  Identities=10%  Similarity=-0.020  Sum_probs=110.4

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEe-----CCcCeeeEEEcCC
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL-----GSGPYNTVRWNPK  134 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~-----~~~~~~~~~~sPd  134 (321)
                      .+.+++..... ..-.+.....++.++|||||++|+++  ++++.+.+||+...   .+.++     +.+.+.++.||||
T Consensus        43 ~v~v~D~~t~~-v~~~~~~g~~~~~v~fSpDG~~l~~~--s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          43 QIALIDGSTYE-IKTVLDTGYAVHISRLSASGRYLFVI--GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             EEEEEETTTCC-EEEEEECSSCEEEEEECTTSCEEEEE--ETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             EEEEEECCCCc-EEEEEeCCCCeeEEEECCCCCEEEEE--cCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            36777776542 22223333469999999999999986  56889999998542   33333     2334455678899


Q ss_pred             CCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      |++|++++.  .++.|.+||..+++.+..+..+             ....+.+||||.+++.+..     .++.+.+|++
T Consensus       120 G~~l~vs~~--~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~-----~~~~i~~~d~  192 (432)
T d1qksa2         120 DKYAIAGAY--WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----ETGKILLVDY  192 (432)
T ss_dssp             TTEEEEEEE--ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----TTTEEEEEET
T ss_pred             CCEEEEEcC--CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc-----cCCeEEEEEc
Confidence            998865542  6799999999999888776543             2334788999998877775     3788999998


Q ss_pred             cC-cee--EE-eccCceEEEEEecCCCCCCCC
Q 020756          202 NG-SLF--FK-KMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       202 ~g-~~l--~~-~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .. +.+  .. ..-..+..+.++|++..++..
T Consensus       193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va  224 (432)
T d1qksa2         193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITA  224 (432)
T ss_dssp             TCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             cCCCcceEEEEcccCccccceECCCCCEEEEe
Confidence            43 332  22 233567899999999877755

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=9.9e-11  Score=101.56  Aligned_cols=158  Identities=11%  Similarity=0.020  Sum_probs=109.3

Q ss_pred             ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 020756           25 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGF  103 (321)
Q Consensus        25 ~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v~l~~~~~v~~~~wsP~g~~l~~~~g~  103 (321)
                      .-.+..+..+.|+|+|++|++.. .|         |...||.+....... ......|.++|.+++|+|++..+++. |.
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s-~D---------g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s-g~   76 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITS-WD---------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV-GT   76 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEE-TT---------SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE-EE
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEE-CC---------CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEE-cc
Confidence            34566788999999999987742 11         444566665544322 23334689999999999987654443 56


Q ss_pred             CCCeEEEEeCCCceeE-Ee---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC----eEEEeeeCC----Ceee
Q 020756          104 MPASATIFNKKCRPIL-EL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE----CSVT  171 (321)
Q Consensus       104 ~~~~i~i~d~~~~~~~-~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~----~~i~~~~~~----~~~~  171 (321)
                      .++.+.+|+....... ..   +........+.+++..+++++   .++.+.+||++++    ........+    ....
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS---WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI  153 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE---TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccc---cccccceeeccccccceeeecccccccccceeee
Confidence            7899999999654332 22   233345566778888999988   8899999998643    222222222    3445


Q ss_pred             EEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +.+++++..+++++.      |+.+++|++.
T Consensus       154 ~~~~~~~~~~~~~~~------d~~i~~~~~~  178 (342)
T d1yfqa_         154 FTMDTNSSRLIVGMN------NSQVQWFRLP  178 (342)
T ss_dssp             EEEEECSSEEEEEES------TTEEEEEESS
T ss_pred             eeeeccCCceeeecC------CCcEEEEecc
Confidence            788999999999994      9999999984

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.6e-09  Score=92.92  Aligned_cols=175  Identities=16%  Similarity=0.099  Sum_probs=107.0

Q ss_pred             CeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeCCCceeE
Q 020756           41 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPIL  119 (321)
Q Consensus        41 ~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~-~~i~i~d~~~~~~~  119 (321)
                      +.|++++.++    +..  +.-+||+++.+|.....+. .....+...+|||||+.||++..... ..+.+.+..+....
T Consensus         4 ~~iay~~~~~----~~~--~~~~l~i~d~dG~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~   76 (269)
T d2hqsa1           4 TRIAYVVQTN----GGQ--FPYELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR   76 (269)
T ss_dssp             CEEEEEEECS----SSS--CCEEEEEEETTSCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             CeEEEEEEeC----CCC--ceEEEEEEcCCCCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee
Confidence            5677765433    221  1225999999998766664 45678899999999999999754322 25666777655444


Q ss_pred             Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE-------------------------------------------
Q 020756          120 EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD-------------------------------------------  154 (321)
Q Consensus       120 ~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD-------------------------------------------  154 (321)
                      .+  +........|||+|+.|++.........+..+.                                           
T Consensus        77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~  156 (269)
T d2hqsa1          77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  156 (269)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeee
Confidence            33  667778899999999998865322111222221                                           


Q ss_pred             -CCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee--cCcee-EEeccCceEEEEEecCCCCCC
Q 020756          155 -YVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGSLF-FKKMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       155 -~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~--~g~~l-~~~~~~~~~~~~w~P~~~~~~  227 (321)
                       +..+........ .......|||||++++....     ..+...||.+  .+... ............|+|++..|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         157 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS-----NGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             ETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE-----CSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEE
T ss_pred             ecccccceeeecccccccccccccccceeEEEee-----cCCceeeeEeecccccceEeecCccccceEECCCCCEEE
Confidence             111110000001 12334689999999999885     2445555555  33333 223344567789999998775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.3e-10  Score=93.40  Aligned_cols=123  Identities=13%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeCCcCeeeEEEcCCCCeEEEE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELGSGPYNTVRWNPKGKFLCLA  141 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~~~~~~~~~~sPdG~~l~~~  141 (321)
                      .+..++............+...+..+.|+  +..|++  +..++.+.+||++.. .+..+.........+++++.+|+++
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  234 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSG  234 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEE
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEE--ecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEE
Confidence            35555554432222222356677777775  456666  467899999999654 4444422222234577889999999


Q ss_pred             ccCCCCCcEEEEECCC---------CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          142 GFGNLPGDMAFWDYVD---------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       142 g~~n~~g~i~iwD~~~---------~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      +   .+|.|++||+.+         ..++..+..|  .++.++|  |+.+|++++      .|+.|+|||
T Consensus       235 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s------~Dg~i~iWD  293 (293)
T d1p22a2         235 A---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS------HDDTILIWD  293 (293)
T ss_dssp             E---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC------SSSEEEEEC
T ss_pred             c---CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEe------cCCEEEEeC
Confidence            8   899999999653         2466777666  6777887  678899988      499999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.8e-10  Score=98.86  Aligned_cols=157  Identities=14%  Similarity=0.130  Sum_probs=105.2

Q ss_pred             EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-ee----EEe-CCcCeeeEEEcCCCCe
Q 020756           64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI----LEL-GSGPYNTVRWNPKGKF  137 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~----~~~-~~~~~~~~~~sPdG~~  137 (321)
                      +|.++..+.......+++.+.+.+++|||||++|++. +..++.|.+|++... ..    ... .......++|+|||++
T Consensus        18 v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~-~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~   96 (333)
T d1ri6a_          18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVG-VRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQF   96 (333)
T ss_dssp             EEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSE
T ss_pred             EEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEE-ECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCE
Confidence            4444444443333345678899999999999999775 455789999998432 11    111 3344567999999999


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEee---eC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--eeE-E--
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGTT---RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LFF-K--  208 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~~---~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l~-~--  208 (321)
                      |+++++  .++.|.+|+..........   .. ..+..+.++|||++++++..     .+..+.+|+....  ... .  
T Consensus        97 l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~  169 (333)
T d1ri6a_          97 VFVGSY--NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL-----KQDRICLFTVSDDGHLVAQDPA  169 (333)
T ss_dssp             EEEEET--TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG-----GGTEEEEEEECTTSCEEEEEEE
T ss_pred             Eeeccc--CCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc-----ccceeeEEEeccCCcceeeece
Confidence            999873  3578999988766433222   22 26778999999999998885     3677999987432  111 0  


Q ss_pred             ----eccCceEEEEEecCCCCCCC
Q 020756          209 ----KMFDKLFQAEWKPVSPDKFG  228 (321)
Q Consensus       209 ----~~~~~~~~~~w~P~~~~~~~  228 (321)
                          ........+.|+++...++.
T Consensus       170 ~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         170 EVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEE
T ss_pred             eeeeecCCCccEEEEeccceeEEe
Confidence                11234567888887765553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.17  E-value=1.2e-09  Score=95.70  Aligned_cols=91  Identities=14%  Similarity=0.065  Sum_probs=69.4

Q ss_pred             eEEEEeCCCceeE--Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEE
Q 020756          107 SATIFNKKCRPIL--EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYF  181 (321)
Q Consensus       107 ~i~i~d~~~~~~~--~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l  181 (321)
                      .+.+||.......  .+  +...+..+.++|++.++++..    .+.|.+||..+++.+..+.. +.+..++|||||++|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l  306 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKL  306 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCE
T ss_pred             eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec----CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEE
Confidence            3455666433221  12  566778899999999988875    35799999999998887765 478899999999999


Q ss_pred             EEEEcCCceeecCcEEEEeec-CceeE
Q 020756          182 MTATTAPRLQIDNGIKIFHHN-GSLFF  207 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~~-g~~l~  207 (321)
                      ++++.      |+.|+|||.. ++.+.
T Consensus       307 ~v~~~------d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         307 YLGGT------FNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             EEESB------SSEEEEEETTTTEEEE
T ss_pred             EEEeC------CCcEEEEECccCCEEE
Confidence            99984      9999999995 55553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.17  E-value=2.4e-09  Score=93.68  Aligned_cols=207  Identities=10%  Similarity=0.054  Sum_probs=125.0

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecc-cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeec
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPL   79 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f-~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l   79 (321)
                      +.++.|.||++.+   ++.+....+. ......+.|+|||+++++...           ....|+.++....... .+..
T Consensus        15 ~~~~~v~v~D~~t---~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~-----------~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_          15 NYPNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN-----------HYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             ETTTEEEEEETTT---TEEEEEEECSSCCSSCEEEECTTSSEEEEEET-----------TTTEEEEEETTTTEEEEEEES
T ss_pred             cCCCEEEEEECCC---CCEEEEEEcCCCCCcceEEECCCCCEEEEEEC-----------CCCcEEEEeCccCeeeeeecc
Confidence            3578999999998   7777776654 345668999999999987531           1123666666554222 2222


Q ss_pred             CC-----CCCeEEEEECcCCCEEEEEEc----------cCCCeEEEEeCCCc----eeEEe-CCcCeeeEEEcCCCCeEE
Q 020756           80 RK-----EGPVHDVQWSYSGSEFAVVYG----------FMPASATIFNKKCR----PILEL-GSGPYNTVRWNPKGKFLC  139 (321)
Q Consensus        80 ~~-----~~~v~~~~wsP~g~~l~~~~g----------~~~~~i~i~d~~~~----~~~~~-~~~~~~~~~~sPdG~~l~  139 (321)
                      ..     ...+..++|+|||+++++...          ..+..+.+||....    .+... ....+..+.+++++++++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            21     124568999999999887532          13457788876321    11111 122334445555554433


Q ss_pred             EEc--------------------------------------cC-----------------------CCCCcEEEEECCCC
Q 020756          140 LAG--------------------------------------FG-----------------------NLPGDMAFWDYVDG  158 (321)
Q Consensus       140 ~~g--------------------------------------~~-----------------------n~~g~i~iwD~~~~  158 (321)
                      ..+                                      .+                       +....+.+||+.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence            321                                      00                       01123445555555


Q ss_pred             eEEEeee-C--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe-ccCceEEEEEecCCCCCCCC
Q 020756          159 KQLGTTR-A--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       159 ~~i~~~~-~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~-~~~~~~~~~w~P~~~~~~~~  229 (321)
                      ....... .  ..+..+.+++++.+++...       ++.+.+||. +++++... ....++.++|+|++..++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~  309 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-------LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG  309 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-------ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEec-------CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEE
Confidence            3332221 1  2556678888888888776       678999998 45555333 33478899999999998865

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=1.9e-09  Score=99.45  Aligned_cols=176  Identities=10%  Similarity=0.102  Sum_probs=117.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-ee--eeec
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EG--LVPL   79 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~--~v~l   79 (321)
                      ..+.|+||++.+   ++.+....... ....+.+||||++|++.. .|         |  .+.++++.... ..  .+..
T Consensus        40 ~dg~v~vwD~~t---~~~~~~l~~g~-~~~~vafSPDGk~l~~~~-~d---------~--~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          40 DAGQIALVDGDS---KKIVKVIDTGY-AVHISRMSASGRYLLVIG-RD---------A--RIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             TTTEEEEEETTT---CSEEEEEECCS-SEEEEEECTTSCEEEEEE-TT---------S--EEEEEETTSSSCEEEEEEEC
T ss_pred             CCCEEEEEECCC---CcEEEEEeCCC-CeeEEEECCCCCEEEEEe-CC---------C--CEEEEEccCCceeEEEEEeC
Confidence            368999999999   78888887654 467899999999987642 11         2  35666665442 11  1221


Q ss_pred             --CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-Ee-------------CCcCeeeEEEcCCCCeEEEEcc
Q 020756           80 --RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL-------------GSGPYNTVRWNPKGKFLCLAGF  143 (321)
Q Consensus        80 --~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~~-------------~~~~~~~~~~sPdG~~l~~~g~  143 (321)
                        .+.+.+.++.|+|||+++++. +..++.+.+||....... .+             +......+..++++..++....
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~-~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAG-AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEE-EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCcceEEeeeecCCCCEEEEe-ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence              234556677888999998775 345789999998654332 22             1233455777788877777652


Q ss_pred             CCCCCcEEEEECCCCe--EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          144 GNLPGDMAFWDYVDGK--QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       144 ~n~~g~i~iwD~~~~~--~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                        ..+.+.+++..+..  .+..... ..+..+.|+|+|++++++..     .++.+.+++..
T Consensus       183 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~-----~~~~~~~~~~~  237 (426)
T d1hzua2         183 --ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN-----NSNKVAVIDSK  237 (426)
T ss_dssp             --TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEET-----TCSEEEEEETT
T ss_pred             --CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeee-----cccceeeeecc
Confidence              23677777766553  2333333 37788999999999999886     36778888874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.11  E-value=2.2e-09  Score=98.97  Aligned_cols=210  Identities=12%  Similarity=0.101  Sum_probs=123.8

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccc-----------eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTV-----------QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG   71 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~-----------~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g   71 (321)
                      .++.|+||+...   +.++...........           .+..++++..+++...           +...+..+....
T Consensus       129 ~~~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~-----------~~~~i~~~~~~~  194 (426)
T d1hzua2         129 WPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------ETGKVLLVNYKD  194 (426)
T ss_dssp             ESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------TTTEEEEEECSS
T ss_pred             CCCeEEEEcCCc---cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC-----------CCCeEEEEEecc
Confidence            367788998887   555544433322222           3344455544443210           122233333322


Q ss_pred             -CceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe--C--CcCeeeEEEcCCCCeEEEEccCC
Q 020756           72 -THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--G--SGPYNTVRWNPKGKFLCLAGFGN  145 (321)
Q Consensus        72 -~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~--~--~~~~~~~~~sPdG~~l~~~g~~n  145 (321)
                       .......+.+...++++.|+|+|+++++.. .....+.+++.....+ ..+  +  ........+.+++...+......
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (426)
T d1hzua2         195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAA-NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL  273 (426)
T ss_dssp             SSSCEEEEEECCSSEEEEEECTTSCEEEEEE-TTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred             ccceeeEEeccCCccEeeeECCCCcEEEeee-ecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence             212222345677899999999999988863 4466888999865433 333  2  22233444444444333322222


Q ss_pred             CCCcEEEEECCC-------CeEEEeeeCC--CeeeEEEccCCCEEEEEEcC-CceeecCcEEEEee-cCceeEE------
Q 020756          146 LPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHH-NGSLFFK------  208 (321)
Q Consensus       146 ~~g~i~iwD~~~-------~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~-~rl~~d~~v~iw~~-~g~~l~~------  208 (321)
                      .++.+.+|+...       ++.+..+..|  .+..++|||||++|++.... +.-..++.++|||+ +++.+.+      
T Consensus       274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~  353 (426)
T d1hzua2         274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE  353 (426)
T ss_dssp             TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred             CCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccch
Confidence            467888887654       3677777776  67889999999999964321 11124789999998 4544322      


Q ss_pred             -----eccCceEEEEEecCCCCCC
Q 020756          209 -----KMFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       209 -----~~~~~~~~~~w~P~~~~~~  227 (321)
                           .+...+..++|+|++..++
T Consensus       354 ~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         354 WADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             HHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             hcccCCCCccEEEEEECCCCCEEE
Confidence                 2334689999999998774

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.11  E-value=6.9e-09  Score=91.72  Aligned_cols=103  Identities=2%  Similarity=-0.210  Sum_probs=60.7

Q ss_pred             CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecC--
Q 020756            4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR--   80 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~--   80 (321)
                      ...|.||+..+   ++.+.+.....  .-.+.|||||++|++........  ........|..++..... ...+.+.  
T Consensus        27 ~~~v~v~D~~t---g~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~--~~g~~d~~v~v~D~~t~~~~~~~~~~~~   99 (355)
T d2bbkh_          27 VTQQFVIDGEA---GRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRI--ARGERTDYVEVFDPVTLLPTADIELPDA   99 (355)
T ss_dssp             SEEEEEEETTT---TEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEET--TEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             cCeEEEEECCC---CcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccc--cccCCCCEEEEEECCCCCEEEEEecCCc
Confidence            34688898888   77777766543  34789999999998864321100  001122346666654432 2222221  


Q ss_pred             C----CCCeEEEEECcCCCEEEEEEccCCCeEEEEeC
Q 020756           81 K----EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  113 (321)
Q Consensus        81 ~----~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~  113 (321)
                      +    ......++|+|+|++++++....+..+.+||.
T Consensus       100 ~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  136 (355)
T d2bbkh_         100 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  136 (355)
T ss_dssp             CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeec
Confidence            1    12235689999999988875544556666655

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=1.7e-10  Score=107.74  Aligned_cols=133  Identities=14%  Similarity=0.172  Sum_probs=94.4

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--------CCcCeeeEEEcCCCCeEEEEcc------CCCCCcEE
Q 020756           86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--------GSGPYNTVRWNPKGKFLCLAGF------GNLPGDMA  151 (321)
Q Consensus        86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--------~~~~~~~~~~sPdG~~l~~~g~------~n~~g~i~  151 (321)
                      ..+.|.++++++..    .++.+.+||+.+.....+        +...+.++.|||||++|+++..      .+..+.++
T Consensus        20 ~~~~W~~d~~~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK----QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE----SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE----cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            46899999975543    356899999976544332        2346889999999999998752      12357899


Q ss_pred             EEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe---------------------
Q 020756          152 FWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---------------------  209 (321)
Q Consensus       152 iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~---------------------  209 (321)
                      +||+.+++........ .+..+.|||||++||+..       ++.+.+|+..+......                     
T Consensus        96 l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-------~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEECCCCcccccccCCccccccccccCcceeeEee-------cccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            9999988754433333 678899999999999977       88999999865432111                     


Q ss_pred             ccCceEEEEEecCCCCCCCC
Q 020756          210 MFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       210 ~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .......+.|+|++..+...
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEE
T ss_pred             ecCCccccEECCCCCcccee
Confidence            11123457799999877654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.04  E-value=3.2e-08  Score=88.16  Aligned_cols=78  Identities=12%  Similarity=-0.004  Sum_probs=56.4

Q ss_pred             eEEEcCCCCeEEEEccCC-------CCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756          128 TVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  199 (321)
Q Consensus       128 ~~~~sPdG~~l~~~g~~n-------~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw  199 (321)
                      .+.++|+|..++.....+       ..+.|.+||..+++.+..+... .+..++|||||++++.++..    .|+.|+||
T Consensus       271 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~----~d~~v~v~  346 (373)
T d2madh_         271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA----GTEVLHIY  346 (373)
T ss_pred             eeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeC----CCCeEEEE
Confidence            457778887776654321       3568999999999988887654 78889999999965432211    48999999


Q ss_pred             ee-cCceeEEe
Q 020756          200 HH-NGSLFFKK  209 (321)
Q Consensus       200 ~~-~g~~l~~~  209 (321)
                      |. +|+.+...
T Consensus       347 D~~tg~~~~~~  357 (373)
T d2madh_         347 DAGAGDQDQST  357 (373)
T ss_pred             ECCCCCEEEEE
Confidence            99 57776443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-09  Score=101.51  Aligned_cols=192  Identities=9%  Similarity=0.112  Sum_probs=110.9

Q ss_pred             CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC--
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--   80 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~--   80 (321)
                      ..+.|.+|++.+......+....+-......+.|||||++|++...+. .....++.|  .+++.++..+....+...  
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~-~~~r~s~~~--~~~i~d~~~~~~~~l~~~~~  111 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE-PIYQHSYTG--YYVLSKIPHGDPQSLDPPEV  111 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC-CCSSSCCCS--EEEEEESSSCCCEECCCTTC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEccc-ceeEeeccc--cEEEEEccCCceeeccCccC
Confidence            456788999987321112333344445667889999999998863211 111123334  345556655433333222  


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CC------------------cCeeeEEEcCCCCeEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GS------------------GPYNTVRWNPKGKFLC  139 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~------------------~~~~~~~~sPdG~~l~  139 (321)
                      ..+.+..+.|||||+.+|++.+   ..+.+.+..+.....+   +.                  +....+.|||||++||
T Consensus       112 ~~~~l~~~~wSPDG~~iafv~~---~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         112 SNAKLQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             CccccceeeeccCCceEEEEec---ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            2445677999999999999754   4687777644322211   11                  1124678999999999


Q ss_pred             EEccCC-------------------------------CCCcEEEEECCCCeEEE-eee-------CCCeeeEEEccCCCE
Q 020756          140 LAGFGN-------------------------------LPGDMAFWDYVDGKQLG-TTR-------AECSVTSEWSPDGRY  180 (321)
Q Consensus       140 ~~g~~n-------------------------------~~g~i~iwD~~~~~~i~-~~~-------~~~~~~~~wSpdG~~  180 (321)
                      +..+..                               -...+.++|++++.... ...       .+.+..+.|+||+++
T Consensus       189 f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~  268 (465)
T d1xfda1         189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (465)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE
Confidence            974211                               01246777876553211 111       113566899999997


Q ss_pred             EEEEEcCCceeecCcEEEEeec
Q 020756          181 FMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++....  |.+....+.++|..
T Consensus       269 ~~~~~n--R~q~~~~i~~~d~~  288 (465)
T d1xfda1         269 AVTWLN--RAQNVSILTLCDAT  288 (465)
T ss_dssp             EEEEEE--TTSCEEEEEEEETT
T ss_pred             EEEEEc--cccccceEEEEcCC
Confidence            777664  22222345666663

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.00  E-value=2.3e-08  Score=85.42  Aligned_cols=183  Identities=9%  Similarity=-0.025  Sum_probs=106.7

Q ss_pred             EEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC------C
Q 020756            9 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------E   82 (321)
Q Consensus         9 v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~------~   82 (321)
                      ||.+...  +....+++..........|||||++|+++...+    +..  ....||.++..++...+++...      .
T Consensus        23 l~~~d~~--~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~----~~~--~~~~i~~~~~~~g~~~~lt~~~~~~~~~~   94 (281)
T d1k32a2          23 LWEHDLK--SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRG----SSL--NTADLYFYNGENGEIKRITYFSGKSTGRR   94 (281)
T ss_dssp             EEEEETT--TCCEEEEECSSSEEEEEEECTTSSEEEEEEEES----TTC--CEEEEEEEETTTTEEEECCCCCEEEETTE
T ss_pred             EEEEECC--CCCEEEEecCCCcccCEEECCCCCEEEEEEeeC----CCC--CceEEEEEEecCCceEEeeecCCCccCcc
Confidence            5544432  345667777777888999999999999875322    111  1235889999888666665332      2


Q ss_pred             CCeEEEEECcCCCEEEEEEccCC----CeEEEEeCCCceeEEe-------------------------------------
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMP----ASATIFNKKCRPILEL-------------------------------------  121 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~----~~i~i~d~~~~~~~~~-------------------------------------  121 (321)
                      .....+.|+|+|+.|++.....+    ..+.+.+..+......                                     
T Consensus        95 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (281)
T d1k32a2          95 MFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGK  174 (281)
T ss_dssp             ECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCE
T ss_pred             ccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcce
Confidence            34567899999999887532111    1222222221111100                                     


Q ss_pred             ---------------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEc
Q 020756          122 ---------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       122 ---------------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s  186 (321)
                                     .........++++  .++.....+....|+++|+++++..............|||||+.|+... 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~-  251 (281)
T d1k32a2         175 IWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-  251 (281)
T ss_dssp             EEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-
T ss_pred             eeeeccccceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEe-
Confidence                           1112223344443  3444332334467899999766433322222333457999999999866 


Q ss_pred             CCceeecCcEEEEeecCceeEE
Q 020756          187 APRLQIDNGIKIFHHNGSLFFK  208 (321)
Q Consensus       187 ~~rl~~d~~v~iw~~~g~~l~~  208 (321)
                            ++.++++|+.+.....
T Consensus       252 ------~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         252 ------GGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             ------TTEEEEECTTTCCEEE
T ss_pred             ------CCEEEEEECCCCCEEE
Confidence                  6778889987665543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.95  E-value=1.5e-07  Score=83.58  Aligned_cols=183  Identities=7%  Similarity=-0.104  Sum_probs=112.4

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeecCC--
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRK--   81 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l~~--   81 (321)
                      +.|.||+..+   ++.+.+....  ....+.|||||++|++..............+  .+..++....... .+....  
T Consensus        47 ~~v~v~D~~t---g~~~~~~~~~--~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~--~v~v~D~~t~~~~~~~~~~~~~  119 (373)
T d2madh_          47 IQQWVLDAGS---GSILGHVNGG--FLPNPVAAHSGSEFALASTSFSRIAKGKRTD--YVEVFDPVTFLPIADIELPDAP  119 (373)
T ss_pred             ceEEEEECCC---CCEEEEEeCC--CCccEEEcCCCCEEEEEeecCCcccccccce--EEEEEECCCCcEEEEEecCCcc
Confidence            3467777666   6777765533  3447999999999988643211111111112  3455555443221 222111  


Q ss_pred             ----CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756           82 ----EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  157 (321)
Q Consensus        82 ----~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~  157 (321)
                          ......+.|+|+|+.+++.....+..+.+|+.....+... .....++.++|+|+.++++..  .++.+.+||...
T Consensus       120 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~~~v~~~--~dg~~~~~~~~~  196 (373)
T d2madh_         120 RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-LSSPTCYHIHPGAPSTFYLLC--AQGGLAKTDHAG  196 (373)
T ss_pred             eeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-eccceeEEEecCCCcEEEEEc--CCCeEEEEEcCC
Confidence                1122568999999988776545556888888865443332 223467889999998765542  579999999988


Q ss_pred             CeEEEeeeCC--------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          158 GKQLGTTRAE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       158 ~~~i~~~~~~--------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      ++........        ....+.+++++.+++.+.       ++.+.+|+..+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~  244 (373)
T d2madh_         197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-------SGKILQADISAA  244 (373)
T ss_pred             ceeeEEEeeeccccCccceeeeEEECCCceEEEecC-------CceEEEEEcCCC
Confidence            8766544321        233467788887765554       788888887554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.92  E-value=6.1e-08  Score=86.92  Aligned_cols=57  Identities=14%  Similarity=-0.034  Sum_probs=41.7

Q ss_pred             cEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe
Q 020756          149 DMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  209 (321)
Q Consensus       149 ~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~  209 (321)
                      .|++||..+++.+..+... .+..++|||||+.++.++..    .++.|+|||. +|+.+...
T Consensus       295 ~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~----~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         295 NTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA----GTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             EEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET----TTTEEEEEESSSCEEEEEC
T ss_pred             eEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeC----CCCeEEEEECCCCCEEEEE
Confidence            5888999999888776654 56779999999864433321    4889999998 56666443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.90  E-value=2.2e-08  Score=92.90  Aligned_cols=182  Identities=11%  Similarity=0.124  Sum_probs=117.8

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccc------------------------------eEEeCCCCCeeEEEEEecc
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTV------------------------------QLNWNRGSTGLLAVAQSDV   51 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~------------------------------~~~Wsp~G~~l~~~~~~d~   51 (321)
                      |+.|.|+||++|+   .+.+...-.|..+..                              ....+|||++|++.-    
T Consensus        18 g~sG~V~V~dlpS---~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d----   90 (441)
T d1qnia2          18 GHQGEVRVLGVPS---MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND----   90 (441)
T ss_dssp             BTTCCEEEEEETT---TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE----
T ss_pred             CCCCcEEEEeCCC---CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc----
Confidence            6789999999999   677777666542211                              111257788876641    


Q ss_pred             cCCCceeecceeEEEEEcCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-----------------eEEEEeC
Q 020756           52 DKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-----------------SATIFNK  113 (321)
Q Consensus        52 d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~-----------------~i~i~d~  113 (321)
                       +      +...|..++..... ..++.+.....++.++++|+|+...++.+....                 .+..+|.
T Consensus        91 -~------~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          91 -K------ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             -T------TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             -C------CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence             1      34457788876653 345566777889999999999965554332221                 2234565


Q ss_pred             CCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCC--------------------------------------CCcEEEE
Q 020756          114 KCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNL--------------------------------------PGDMAFW  153 (321)
Q Consensus       114 ~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~--------------------------------------~g~i~iw  153 (321)
                      ... ....+ -.+....+.|+|||++++++.....                                      ++.+.++
T Consensus       164 ~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd  243 (441)
T d1qnia2         164 ETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD  243 (441)
T ss_dssp             TTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             ccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence            433 22233 2345678999999999988764321                                      2344444


Q ss_pred             ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      +....+.+..+..+ ....+..||||+|++++..     .++++.+||+.
T Consensus       244 ~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~-----~~~tvsv~d~~  288 (441)
T d1qnia2         244 GRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK-----LSPTVSVIAID  288 (441)
T ss_dssp             CSSSCSSEEEECCBSSCCCEEECTTSCEEEEECT-----TSSBEEEEEGG
T ss_pred             cccCCceEEEEeCCCCccCceECCCCCEEEEeCC-----cCCcEEEEEee
Confidence            44444444444443 5667999999999998886     59999999973

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.5e-08  Score=95.19  Aligned_cols=142  Identities=12%  Similarity=0.197  Sum_probs=93.6

Q ss_pred             ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecC--CCCCeEEEEECcCCCEEEEEEcc
Q 020756           27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLR--KEGPVHDVQWSYSGSEFAVVYGF  103 (321)
Q Consensus        27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~--~~~~v~~~~wsP~g~~l~~~~g~  103 (321)
                      |.....+..|.+++.++..      +..|       .|+++++....+.. +...  ....+.+..|||||+++++.+..
T Consensus        15 ~~~~~~~~~W~~~~~~~~~------~~~g-------~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~   81 (465)
T d1xfda1          15 FKIHDPEAKWISDTEFIYR------EQKG-------TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNV   81 (465)
T ss_dssp             TCCCCCCCCBSSSSCBCCC------CSSS-------CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred             cccCCCCCEEeCCCcEEEE------eCCC-------cEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcc
Confidence            4455567789999887532      1222       25566665443332 2222  23467889999999998886532


Q ss_pred             -------CCCeEEEEeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---C
Q 020756          104 -------MPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---C  168 (321)
Q Consensus       104 -------~~~~i~i~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~  168 (321)
                             ..+.+.+||+.......+     ....+....|||||+.|++..    +++|++.+...+..+......   .
T Consensus        82 ~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~----~~nl~~~~~~~~~~~~lt~~g~~~~  157 (465)
T d1xfda1          82 EPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYCAHVGKQAIRVVSTGKEGV  157 (465)
T ss_dssp             CCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEESSSSSCCEEEECCCBTTT
T ss_pred             cceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe----cceEEEEecCCCceEEEecccCcce
Confidence                   235788999977666555     233455689999999999974    568999988776443332211   1


Q ss_pred             e-----------------eeEEEccCCCEEEEEE
Q 020756          169 S-----------------VTSEWSPDGRYFMTAT  185 (321)
Q Consensus       169 ~-----------------~~~~wSpdG~~l~t~~  185 (321)
                      +                 ..+-|||||++||+..
T Consensus       158 i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             eeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            1                 3467999999999876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.75  E-value=7.4e-08  Score=84.83  Aligned_cols=117  Identities=13%  Similarity=0.092  Sum_probs=84.0

Q ss_pred             CeEEEEECcCCCEEEEEEc---cCCCeEEEEeCCC-ceeEEeCCcCeeeEEEcCCCCeEEEEcc-------CCCCCcEEE
Q 020756           84 PVHDVQWSYSGSEFAVVYG---FMPASATIFNKKC-RPILELGSGPYNTVRWNPKGKFLCLAGF-------GNLPGDMAF  152 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g---~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~sPdG~~l~~~g~-------~n~~g~i~i  152 (321)
                      |+.-.+.+|||+.+++...   .....+.+||... +.+.++..+....++|||||++|++++.       +..++.|.+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            4444567999999977532   2345799999954 5566665455557999999999987642       123678999


Q ss_pred             EECCCCeEEEeeeCC---------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          153 WDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       153 wD~~~~~~i~~~~~~---------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      ||+.+++.+..+..+         ....+.|+|||++++++...    .+..+.+|+....
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----~~~~~~~~~~~~~  139 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----PAPAVGVVDLEGK  139 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----SSCEEEEEETTTT
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----CCceeeeeecCCC
Confidence            999999887765432         23458999999999887632    3567899998543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.70  E-value=1.1e-06  Score=79.13  Aligned_cols=158  Identities=13%  Similarity=0.066  Sum_probs=99.9

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEE--cCCCceee---eecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT--TDGTHEGL---VPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  106 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~--~~g~~~~~---v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~  106 (321)
                      ..+.|+|+|+++++...           |...++.+.  ..+.....   ...........+.|+|+|+++.++ ...+.
T Consensus       148 h~v~~sPdG~~l~v~d~-----------g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~-~e~~~  215 (365)
T d1jofa_         148 HGMVFDPTETYLYSADL-----------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-MEAGN  215 (365)
T ss_dssp             EEEEECTTSSEEEEEET-----------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-ETTTT
T ss_pred             eEEEECCCCCEEEEeeC-----------CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEe-ccCCC
Confidence            47899999999988521           333344443  33332211   111233466789999999988776 45678


Q ss_pred             eEEEEeCCCc---eeEEeC-------------------CcCeeeEEEcCCCCeEEEEccCC---CCCcEEEEECCCC-eE
Q 020756          107 SATIFNKKCR---PILELG-------------------SGPYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYVDG-KQ  160 (321)
Q Consensus       107 ~i~i~d~~~~---~~~~~~-------------------~~~~~~~~~sPdG~~l~~~g~~n---~~g~i~iwD~~~~-~~  160 (321)
                      +|.+|++...   .+...+                   ......+.++|||++|+++..++   ....|..|++... ..
T Consensus       216 ~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~  295 (365)
T d1jofa_         216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred             EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce
Confidence            9999998432   222110                   01234689999999998875332   2345777776543 11


Q ss_pred             ---EEeee----CCCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          161 ---LGTTR----AECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       161 ---i~~~~----~~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                         .....    +.....++++| +|++|+++..     .++.|.||+++++.+
T Consensus       296 ~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~-----~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-----QEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS-----SSCEEEEEEEETTEE
T ss_pred             eeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC-----CCCeEEEEEEeCCcC
Confidence               11111    12456689998 8999998875     488999999977654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.57  E-value=6.8e-07  Score=75.93  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=78.2

Q ss_pred             EECcC--CCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCC---CCCcEEEEECCCCeEE
Q 020756           89 QWSYS--GSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYVDGKQL  161 (321)
Q Consensus        89 ~wsP~--g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n---~~g~i~iwD~~~~~~i  161 (321)
                      .+|||  |++++++.   .+.|.++|+.+.....+  +.+......|||||+.|++....+   ....|++++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~---~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC---CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE---TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe---CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            46899  99999863   34799999987766655  556778899999999999875322   1246889999888655


Q ss_pred             EeeeCC--------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE
Q 020756          162 GTTRAE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK  208 (321)
Q Consensus       162 ~~~~~~--------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~  208 (321)
                      ......        ....+.|+|||+.|+.............+.+.+..+.....
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP  136 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE
Confidence            432221        33457899999999987643211112234555555555433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.53  E-value=4.6e-06  Score=75.01  Aligned_cols=139  Identities=10%  Similarity=0.002  Sum_probs=85.9

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--cee--EEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPI--LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  153 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~--~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw  153 (321)
                      ...+|.+.|+|||++++++. .....|.+|+...  ...  ..+    .......+.|+|+|+++.+..  ..+++|.+|
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d-~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~--e~~~~V~v~  220 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSAD-LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM--EAGNRICEY  220 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEE-TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE--TTTTEEEEE
T ss_pred             CCcceEEEECCCCCEEEEee-CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEec--cCCCEEEEE
Confidence            34579999999999999874 3344788887632  211  111    223456799999999997776  356899999


Q ss_pred             ECCCCe--EEE---eeeC---------------C-CeeeEEEccCCCEEEEEEcCCceeecCc-----EEEEeec--Cce
Q 020756          154 DYVDGK--QLG---TTRA---------------E-CSVTSEWSPDGRYFMTATTAPRLQIDNG-----IKIFHHN--GSL  205 (321)
Q Consensus       154 D~~~~~--~i~---~~~~---------------~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~-----v~iw~~~--g~~  205 (321)
                      |++..+  .+.   ....               . ....+.++|||++|+++..     .++.     +.+|++.  |.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr-----~~~~~~~~~i~~~~~~~~g~~  295 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR-----ANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE-----ESSTTSCCEEEEEEECTTSCE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc-----cCCCccceEEEEEEecCCCce
Confidence            987553  221   1110               0 1345899999999988762     2333     6666653  222


Q ss_pred             e---EEec----cCceEEEEEec-CCCCCCC
Q 020756          206 F---FKKM----FDKLFQAEWKP-VSPDKFG  228 (321)
Q Consensus       206 l---~~~~----~~~~~~~~w~P-~~~~~~~  228 (321)
                      .   ....    -.....+...| ++..++-
T Consensus       296 ~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~v  326 (365)
T d1jofa_         296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             EEEEEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred             eeEeEeeEEEcCCCCccEEEecCCCCCEEEE
Confidence            1   1111    12445677887 5555553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=8.9e-07  Score=79.05  Aligned_cols=142  Identities=11%  Similarity=-0.059  Sum_probs=90.8

Q ss_pred             ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecCCCCCeEEEEECcCCCEEEEEE--------c
Q 020756           32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVY--------G  102 (321)
Q Consensus        32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~~~~~v~~~~wsP~g~~l~~~~--------g  102 (321)
                      ....-.++|+...+....       ...|...+|.++........ +.. +.  ...++|+|||+.|++..        |
T Consensus        23 ~~~a~~~~~~~~~v~~~~-------~~~g~~~~~~~d~~~~~~~~~~~~-~~--~~~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPA-------YFAGTTENWVSCAGCGVTLGHSLG-AF--LSLAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             BCCCCCCCTTEEEEEECT-------TTCSSEEEEEEETTTTEEEEEEEE-CT--TCEEEECTTSSCEEEEEEEETTTTSS
T ss_pred             cccccCCCCcceeEEeec-------cCCCcceEEEEeCCCCcEEEEEeC-CC--CCcceECCCCCEEEEEcccCcccccc
Confidence            344456777776554321       11245568899877653322 222 22  23589999999999864        2


Q ss_pred             cCCCeEEEEeCCC-ceeEEe--CCc-------CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCe---
Q 020756          103 FMPASATIFNKKC-RPILEL--GSG-------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS---  169 (321)
Q Consensus       103 ~~~~~i~i~d~~~-~~~~~~--~~~-------~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~---  169 (321)
                      ..+..|.+||... +.+..+  +..       ....+.|||||++|+++.+  .++.|.+||+.+++.+..+..+..   
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF--GSSAAAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC--SSSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcEeEEeeccCcceE
Confidence            3456799999854 444444  221       1246899999999998863  358999999999988887765422   


Q ss_pred             ------eeEEEccCCCEEEEEE
Q 020756          170 ------VTSEWSPDGRYFMTAT  185 (321)
Q Consensus       170 ------~~~~wSpdG~~l~t~~  185 (321)
                            ..+.+++||+.++...
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~  192 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEEC
T ss_pred             ccCCCceEEEEcCCCCEEEEEe
Confidence                  2245566666555544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.31  E-value=4.4e-05  Score=67.04  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=97.4

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC--CCeEEE
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM--PASATI  110 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~--~~~i~i  110 (321)
                      .+.|.++|+ |+++     |.      ....|+.++..+.....+........+.+++++||+.+++..+..  ...+..
T Consensus        44 G~~~D~~G~-Ly~~-----D~------~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          44 GLNFDRQGQ-LFLL-----DV------FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             EEEECTTSC-EEEE-----ET------TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eCEECCCCC-EEEE-----EC------CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence            568888887 5543     11      123478888777644444455666789999999998776643332  234566


Q ss_pred             EeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCC---CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEE
Q 020756          111 FNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYF  181 (321)
Q Consensus       111 ~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n---~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l  181 (321)
                      .+..+..+..+     .....+.+.+.|+|++.+....+.   ..+.++.++.+.......... .....++|+|||+.|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~l  191 (319)
T d2dg1a1         112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVL  191 (319)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred             EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceE
Confidence            66665544443     133578899999999766643211   235677777754432222222 255679999999988


Q ss_pred             EEEEcCCceeecCcEEEEeec
Q 020756          182 MTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       182 ~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ..+.+     ..+.|..|+++
T Consensus       192 yvad~-----~~~~I~~~d~~  207 (319)
T d2dg1a1         192 WVTET-----TANRLHRIALE  207 (319)
T ss_dssp             EEEEG-----GGTEEEEEEEC
T ss_pred             EEecc-----cCCceEEEEEc
Confidence            77775     47788888874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.26  E-value=0.00046  Score=58.83  Aligned_cols=153  Identities=13%  Similarity=0.131  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcCeeeEEEcCCCCeE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFL  138 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~sPdG~~l  138 (321)
                      .+..++.++.....+..........++..++|+.++.-  .....+.+++..+..+..+    +......+.+.++|+.+
T Consensus        94 ~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~--~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~  171 (279)
T d1q7fa_          94 QIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVE--CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIF  171 (279)
T ss_dssp             EEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEE--TTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             ccccccccccceeecCCCcccccceeccccCCcEEEEe--eccceeeEeccCCceeecccccccccccceeeeccceeEE
Confidence            34455555554444433445567789999999866653  4456888999988888777    34456778999999887


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe----c
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK----M  210 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~----~  210 (321)
                      ++..   ..+.|++||. +++.+.++...    ....++++++|+.+++-..     .+..|.+|+-+|+++...    .
T Consensus       172 v~d~---~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~-----~~~~v~~f~~~G~~~~~~~~~~~  242 (279)
T d1q7fa_         172 ISDN---RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH-----NNFNLTIFTQDGQLISALESKVK  242 (279)
T ss_dssp             EEEG---GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS-----SSCEEEEECTTSCEEEEEEESSC
T ss_pred             eeec---cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECC-----CCcEEEEECCCCCEEEEEeCCCC
Confidence            7766   5689999998 56666666432    4677999999996665442     133589999999876332    2


Q ss_pred             cCceEEEEEecCCCCC
Q 020756          211 FDKLFQAEWKPVSPDK  226 (321)
Q Consensus       211 ~~~~~~~~w~P~~~~~  226 (321)
                      ....+.++..|++..+
T Consensus       243 ~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         243 HAQCFDVALMDDGSVV  258 (279)
T ss_dssp             CSCEEEEEEETTTEEE
T ss_pred             CCCEeEEEEeCCCcEE
Confidence            3467888888887533

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.21  E-value=3.2e-05  Score=71.16  Aligned_cols=212  Identities=8%  Similarity=0.024  Sum_probs=120.4

Q ss_pred             CceEEEEEcCCcCCCCceeeeecc-cCccceEEeCCCCCeeEEEEEecc----cCCCcee---ecceeEEEEEcCCCc-e
Q 020756            4 PASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDV----DKTNQSY---YGESKLNYLTTDGTH-E   74 (321)
Q Consensus         4 p~~v~v~~~~~~~~~~~i~~~~~f-~~~~~~~~Wsp~G~~l~~~~~~d~----d~t~~s~---~g~~~l~~l~~~g~~-~   74 (321)
                      -.+|.++++..   .+.......- -.....+.++|+|+.+++++..+.    ...++..   .....+..++..... .
T Consensus        93 ~~rVavIDl~t---~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          93 NTRVARIRLDI---MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             TTEEEEEETTT---TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             CCEEEEEECCC---CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            35788888887   4444433332 245667899999998777653321    1111110   000123334544331 1


Q ss_pred             eeeecCCCCCeEEEEECcCCCEEEEEEccC---------------------------------------CCeEEEEeCCC
Q 020756           75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFM---------------------------------------PASATIFNKKC  115 (321)
Q Consensus        75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~---------------------------------------~~~i~i~d~~~  115 (321)
                      .++.+  .+....+.|+|+|+++++..-..                                       .+.+.|++...
T Consensus       170 ~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         170 WQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             EEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            23333  35678899999999888753221                                       11222333322


Q ss_pred             -ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE------------EEeeeC-CCeeeEEEccCCC
Q 020756          116 -RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ------------LGTTRA-ECSVTSEWSPDGR  179 (321)
Q Consensus       116 -~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~------------i~~~~~-~~~~~~~wSpdG~  179 (321)
                       ..+..+  +.. -..+.++|||++|++++  ..+++|.+||+++...            ....+. ......+|+++|.
T Consensus       248 ~~v~~~IPvgks-PhGv~vSPDGkyl~~~~--~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~  324 (441)
T d1qnia2         248 SEFTRYIPVPKN-PHGLNTSPDGKYFIANG--KLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN  324 (441)
T ss_dssp             CSSEEEECCBSS-CCCEEECTTSCEEEEEC--TTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred             CceEEEEeCCCC-ccCceECCCCCEEEEeC--CcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce
Confidence             233444  333 35689999999998876  3679999999865321            111111 1445579999997


Q ss_pred             EEEEEEcCCceeecCcEEEEeec-------Cc----eeE-------EeccCceEEEEEecCCCCCCCC
Q 020756          180 YFMTATTAPRLQIDNGIKIFHHN-------GS----LFF-------KKMFDKLFQAEWKPVSPDKFGD  229 (321)
Q Consensus       180 ~l~t~~s~~rl~~d~~v~iw~~~-------g~----~l~-------~~~~~~~~~~~w~P~~~~~~~~  229 (321)
                      .+.+..      .|+.|..|++.       |.    .+.       .+|...+....++|++.++++-
T Consensus       325 ~yts~~------~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         325 AYTTLF------IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             EEEEET------TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             EEEccc------ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            665544      59999999973       22    111       2344444455677777777654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.15  E-value=0.00043  Score=60.41  Aligned_cols=181  Identities=8%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec--CCCCCeEEEEECcCCCEEEEEEcc----C
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYGF----M  104 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l--~~~~~v~~~~wsP~g~~l~~~~g~----~  104 (321)
                      ...+.++++|+.+++. ..+..       ....++.++..+.....+..  ......+++.+.|+|+.++.-...    .
T Consensus        84 p~gla~~~dG~l~va~-~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~  155 (319)
T d2dg1a1          84 PAAIKIHKDGRLFVCY-LGDFK-------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  155 (319)
T ss_dssp             EEEEEECTTSCEEEEE-CTTSS-------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             eeEEEECCCCCEEEEe-cCCCc-------cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccC
Confidence            4466777777544331 11100       12235555555443222221  123457899999999865542111    1


Q ss_pred             CCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-e---EEE-----eeeCC-CeeeE
Q 020756          105 PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-K---QLG-----TTRAE-CSVTS  172 (321)
Q Consensus       105 ~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~---~i~-----~~~~~-~~~~~  172 (321)
                      .+.+..++.++..+..+  +-..-|.++|+|||+.|.++..  ..+.|+.||++.. .   ...     ..... ..-.+
T Consensus       156 ~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl  233 (319)
T d2dg1a1         156 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  233 (319)
T ss_dssp             CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             cceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc--cCCceEEEEEcCCCceeccccceeeeccCCccceeee
Confidence            12466666666655544  3345678999999998877653  4579999997632 1   111     11111 23458


Q ss_pred             EEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccC--------ceEEEEEecCCCCCC
Q 020756          173 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--------KLFQAEWKPVSPDKF  227 (321)
Q Consensus       173 ~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~--------~~~~~~w~P~~~~~~  227 (321)
                      ++..+|++.++...      .+.|.+|+-+|+++......        ...++.+.|....++
T Consensus       234 ~vD~~G~l~Va~~~------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         234 CIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             EEBTTCCEEEEEET------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             eEcCCCCEEEEEcC------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            99999997777663      78899999999988554332        356777777655444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.14  E-value=0.00026  Score=60.42  Aligned_cols=127  Identities=13%  Similarity=0.133  Sum_probs=86.3

Q ss_pred             EEEEEcCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC----CcCeeeEEEcCCCCeE
Q 020756           64 LNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGPYNTVRWNPKGKFL  138 (321)
Q Consensus        64 l~~l~~~g~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~----~~~~~~~~~sPdG~~l  138 (321)
                      ++.++.++.....+.. .+......++.+++|..+++  ....+.|.+||..++.+.+++    ......+++.|+|+.+
T Consensus       137 ~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~--d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~  214 (279)
T d1q7fa_         137 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEIL  214 (279)
T ss_dssp             EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred             eeEeccCCceeecccccccccccceeeeccceeEEee--eccccceeeeecCCceeeeecccccccCCcccccccCCeEE
Confidence            4445555543222211 23456778899999865544  344568999999999888883    2235678999999976


Q ss_pred             EEEccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      ++-..  .+..|.+||. +++.+.++...    ....++..|||.++++..       ++.|++|.+.
T Consensus       215 Vad~~--~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~-------n~~v~~fr~~  272 (279)
T d1q7fa_         215 IADNH--NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASK-------DYRLYIYRYV  272 (279)
T ss_dssp             EEECS--SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEET-------TTEEEEEECS
T ss_pred             EEECC--CCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeC-------CCeEEEEEee
Confidence            66442  2357999986 67776665432    577899999998665433       8899999874

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.05  E-value=0.00067  Score=59.08  Aligned_cols=177  Identities=18%  Similarity=0.175  Sum_probs=108.1

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC----CeEEEEECcCCCEEEEEEcc---
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG----PVHDVQWSYSGSEFAVVYGF---  103 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~----~v~~~~wsP~g~~l~~~~g~---  103 (321)
                      ...+.+.++|+.|++..            ....+..++.++.....+....++    ..+++.+.|+|...++-.+.   
T Consensus        73 P~Gl~~~~dg~~l~vad------------~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~  140 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVAD------------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA  140 (314)
T ss_dssp             EEEEEECSSSSEEEEEE------------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred             ceeEEEeCCCCEEEEEE------------CCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcc
Confidence            34688888888766531            112367777777643333222222    35889999999866652111   


Q ss_pred             ----------CCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCC----eEEEEccCCCCCcEEEEECCCC-eE-----EE
Q 020756          104 ----------MPASATIFNKKCRPILEL-GSGPYNTVRWNPKGK----FLCLAGFGNLPGDMAFWDYVDG-KQ-----LG  162 (321)
Q Consensus       104 ----------~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~----~l~~~g~~n~~g~i~iwD~~~~-~~-----i~  162 (321)
                                ..+.+..++..+...... +-..-|.+.|+|++.    .|.++..  ..+.|+.||+... ..     ..
T Consensus       141 ~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~  218 (314)
T d1pjxa_         141 PADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             TSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEE
Confidence                      123455566655533322 234457899999875    5666543  4588999987633 22     12


Q ss_pred             eeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce-eEEe--ccCceEEEEEecCCCCCC
Q 020756          163 TTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKK--MFDKLFQAEWKPVSPDKF  227 (321)
Q Consensus       163 ~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~-l~~~--~~~~~~~~~w~P~~~~~~  227 (321)
                      .+...   ..-.+++..+|+.+++...      .+.|.+|+.+|.. +...  ......+++|.|+...+|
T Consensus       219 ~~~~~~~~~pdGiavD~~GnlyVa~~~------~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~ly  283 (314)
T d1pjxa_         219 HIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             EccccccccceeeEEecCCcEEEEEcC------CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEE
Confidence            22221   2345899999998777663      7789999987554 3333  345778899999876555

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.02  E-value=0.0011  Score=56.92  Aligned_cols=176  Identities=9%  Similarity=-0.023  Sum_probs=103.9

Q ss_pred             cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc---CCCceeeeecCCCCCeEEEEECcCCCEEEEEEccC
Q 020756           28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT---DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM  104 (321)
Q Consensus        28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~---~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~  104 (321)
                      ......+.|+++|+.+++..            +...++.+..   .+.......+......+++.+.++|+.++..  ..
T Consensus        67 ~~~~~gla~~~dG~l~v~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~--~~  132 (302)
T d2p4oa1          67 EGKVSGLAFTSNGDLVATGW------------NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD--SY  132 (302)
T ss_dssp             SSEEEEEEECTTSCEEEEEE------------CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEE--TT
T ss_pred             CCCcceEEEcCCCCeEEEec------------CCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeec--cc
Confidence            44556777888887443321            1122333332   2332333344455678999999999766653  44


Q ss_pred             CCeEEEEeCCCceeEEe-------------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE---e-eeCC
Q 020756          105 PASATIFNKKCRPILEL-------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG---T-TRAE  167 (321)
Q Consensus       105 ~~~i~i~d~~~~~~~~~-------------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~---~-~~~~  167 (321)
                      .+.+..+|........+             .....+.+.+.  +..+..+..  ..+.|+.+|........   . ....
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~  208 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVEQT  208 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEESC
T ss_pred             cccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC--CCCeEEeccccccccccccccccCCC
Confidence            56788888765432221             11234556554  566666653  45889988876542211   1 1223


Q ss_pred             CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe----ccCceEEEEE---ecCCCCCC
Q 020756          168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK----MFDKLFQAEW---KPVSPDKF  227 (321)
Q Consensus       168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~----~~~~~~~~~w---~P~~~~~~  227 (321)
                      ....+++++||+++++..      .++.|..++.+|+.....    .......++|   .|+...+|
T Consensus       209 ~pdgia~d~dG~l~va~~------~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         209 NIDDFAFDVEGNLYGATH------IYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             CCSSEEEBTTCCEEEECB------TTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CCcceEECCCCCEEEEEc------CCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            556699999999776665      388899999998864322    2245778889   45555555

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=0.0031  Score=52.74  Aligned_cols=132  Identities=7%  Similarity=-0.013  Sum_probs=87.8

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  158 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~  158 (321)
                      ....++++++++|+.++.  ......+..++..+.....+   +......+.++|+|+++++..   ..+.|..+|.+..
T Consensus        97 ~~~p~~iavd~~g~i~v~--d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~---~~~~i~~~d~~~~  171 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVA--DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT---DNNRVVKLEAESN  171 (260)
T ss_dssp             CCSEEEEEECTTCCEEEE--EGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEG---GGTEEEEECTTTC
T ss_pred             eeecccccccccceeEee--ccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecc---ccccccccccccc
Confidence            356789999999986554  33445788888766544443   234456899999999776665   5578999998755


Q ss_pred             eEEEee-eC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE---eccCceEEEEEecCCC
Q 020756          159 KQLGTT-RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMFDKLFQAEWKPVSP  224 (321)
Q Consensus       159 ~~i~~~-~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~---~~~~~~~~~~w~P~~~  224 (321)
                      ...... .. .....++++++|+++++-..      .+.+..++.++.....   ........+++.+++.
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~  236 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT  236 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETT------TTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecC------CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC
Confidence            433322 22 25677999999987666652      5667777776654422   2234567788888764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.80  E-value=0.0067  Score=51.90  Aligned_cols=157  Identities=11%  Similarity=0.071  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCceeee-ecCC---CCCeEEEEECcCCCEEEEEEcc--CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCC
Q 020756           63 KLNYLTTDGTHEGLV-PLRK---EGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKCRPILEL--GSGPYNTVRWNPK  134 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v-~l~~---~~~v~~~~wsP~g~~l~~~~g~--~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPd  134 (321)
                      .|+.++..+.....+ .+..   ...++++...|+|+..+.....  ....-.+|.+....+..+  .-...|.+.|+|+
T Consensus        79 gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d  158 (295)
T d2ghsa1          79 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPD  158 (295)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTT
T ss_pred             ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCC
Confidence            477777665433322 2222   2357899999999866653221  122455665533333333  3345688999999


Q ss_pred             CCeEEEEccCCCCCcEEEEECCCC------e--EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756          135 GKFLCLAGFGNLPGDMAFWDYVDG------K--QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  204 (321)
Q Consensus       135 G~~l~~~g~~n~~g~i~iwD~~~~------~--~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~  204 (321)
                      ++.|.++..  ..+.|+.|+++..      +  ....+...  ..-.++...+|.+.++.-.      .+.|..||-+|+
T Consensus       159 ~~~l~~~dt--~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~------~g~V~~~dp~G~  230 (295)
T d2ghsa1         159 GTTGYFVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDTDGN  230 (295)
T ss_dssp             SCEEEEEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET------TTEEEEECTTCC
T ss_pred             CceEEEeec--ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC------CCceEEecCCCc
Confidence            998887763  4588999987521      1  11122111  3456889999997766653      677999999999


Q ss_pred             eeEEecc--CceEEEEEe-cCCCCCC
Q 020756          205 LFFKKMF--DKLFQAEWK-PVSPDKF  227 (321)
Q Consensus       205 ~l~~~~~--~~~~~~~w~-P~~~~~~  227 (321)
                      ++.....  ..+.+++|- |+...||
T Consensus       231 ~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         231 HIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             EEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             EeeEecCCCCceEEEEEeCCCCCEEE
Confidence            9866544  467888886 4555555

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.79  E-value=0.00097  Score=60.30  Aligned_cols=136  Identities=10%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             eeEEEEEcCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCC------------------CeEEEEeCCCcee-EEe
Q 020756           62 SKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP------------------ASATIFNKKCRPI-LEL  121 (321)
Q Consensus        62 ~~l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~------------------~~i~i~d~~~~~~-~~~  121 (321)
                      ..|..|+++... .+.+.+.....+|.++.+++++...++.+...                  +.+.++|.....+ ..+
T Consensus       110 ~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV  189 (459)
T d1fwxa2         110 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV  189 (459)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEe
Confidence            346777776542 24566666778898888776654333322211                  2356677754433 222


Q ss_pred             -CCcCeeeEEEcCCCCeEEEEccCCCC-----------------------------------CcEEEEECCCC---eEEE
Q 020756          122 -GSGPYNTVRWNPKGKFLCLAGFGNLP-----------------------------------GDMAFWDYVDG---KQLG  162 (321)
Q Consensus       122 -~~~~~~~~~~sPdG~~l~~~g~~n~~-----------------------------------g~i~iwD~~~~---~~i~  162 (321)
                       -.+....+.++|||+++++.++....                                   +.+.+.|..+.   ..+.
T Consensus       190 ~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~  269 (459)
T d1fwxa2         190 LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR  269 (459)
T ss_dssp             EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEE
T ss_pred             eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeE
Confidence             23456689999999999998753211                                   22334443321   1111


Q ss_pred             eee-CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          163 TTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       163 ~~~-~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                      .+. ......+..||||+|+++++.     .++.+.++|+.
T Consensus       270 yIPVpKsPHGV~vSPDGKyi~VaGK-----Ls~tVSViD~~  305 (459)
T d1fwxa2         270 YIPIANNPHGCNMAPDKKHLCVAGK-----LSPTVTVLDVT  305 (459)
T ss_dssp             EEEEESSCCCEEECTTSSEEEEECT-----TSSBEEEEEGG
T ss_pred             EEecCCCCCceEECCCCCEEEEeCC-----cCCcEEEEEeh
Confidence            121 124556899999999999996     69999999984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=0.0017  Score=54.53  Aligned_cols=127  Identities=6%  Similarity=0.011  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC  139 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~  139 (321)
                      .++.+...+...............+++++|+|+.+++.  .....+..||.++.....+   .......+++.++|++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~--~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~v  197 (260)
T d1rwia_         120 RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTD--TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV  197 (260)
T ss_dssp             EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEE--GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE
T ss_pred             cccccccccceeeeeeecccCCcceeeecCCCCEeeec--cccccccccccccceeeeeeccccCCCccceeeeeeeeee
Confidence            35566555543333333333455789999999855543  4456899999987766555   234457799999998766


Q ss_pred             EEccCCCCCcEEEEECCCCeEEEe-eeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756          140 LAGFGNLPGDMAFWDYVDGKQLGT-TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  200 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~~~~i~~-~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~  200 (321)
                      +..   ..+.|..++......... ... .....++++++|..+++-.      .++.|+..+
T Consensus       198 sd~---~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~------~~~rI~~i~  251 (260)
T d1rwia_         198 TEH---NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR------GNDRVVKLT  251 (260)
T ss_dssp             EET---TTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEG------GGTEEEEEC
T ss_pred             eec---CCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEEC------CCCEEEEEe
Confidence            654   457888888765432221 122 2567899999998666544      255555444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.71  E-value=0.0021  Score=55.21  Aligned_cols=148  Identities=12%  Similarity=0.011  Sum_probs=99.2

Q ss_pred             eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 020756           33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  112 (321)
Q Consensus        33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d  112 (321)
                      ...|.+....|+.+   |.        ....|+.++..++....+.+  ...+..+.+.++|..++..    ...+.++|
T Consensus        22 gp~wd~~~~~l~wv---Di--------~~~~I~r~d~~~g~~~~~~~--~~~~~~i~~~~dg~l~va~----~~gl~~~d   84 (295)
T d2ghsa1          22 GPTFDPASGTAWWF---NI--------LERELHELHLASGRKTVHAL--PFMGSALAKISDSKQLIAS----DDGLFLRD   84 (295)
T ss_dssp             EEEEETTTTEEEEE---EG--------GGTEEEEEETTTTEEEEEEC--SSCEEEEEEEETTEEEEEE----TTEEEEEE
T ss_pred             CCeEECCCCEEEEE---EC--------CCCEEEEEECCCCeEEEEEC--CCCcEEEEEecCCCEEEEE----eCccEEee
Confidence            35799888888764   21        22348888887765555543  4578899999998766542    23688999


Q ss_pred             CCCceeEEe-------CCcCeeeEEEcCCCCeEEEEccCC-CCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEE
Q 020756          113 KKCRPILEL-------GSGPYNTVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMT  183 (321)
Q Consensus       113 ~~~~~~~~~-------~~~~~~~~~~sPdG~~l~~~g~~n-~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t  183 (321)
                      ..+..+..+       .....|.+...|+|++.+.....+ ..+.-.+|.+.+++........ ....+.|++|++.+..
T Consensus        85 ~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          85 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEE
Confidence            876655444       123578899999999877654222 2345566766677554444332 5567999999998888


Q ss_pred             EEcCCceeecCcEEEEeec
Q 020756          184 ATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       184 ~~s~~rl~~d~~v~iw~~~  202 (321)
                      +.+     ..+.|..|+++
T Consensus       165 ~dt-----~~~~I~~~~~d  178 (295)
T d2ghsa1         165 VDT-----KVNRLMRVPLD  178 (295)
T ss_dssp             EET-----TTCEEEEEEBC
T ss_pred             eec-----ccceeeEeeec
Confidence            876     35667777764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.66  E-value=0.00057  Score=58.85  Aligned_cols=108  Identities=9%  Similarity=0.057  Sum_probs=72.7

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--eE
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQ  160 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--~~  160 (321)
                      .+.+++++|||+.+++  ....++|..+|..+...... .....+.++|+|||+++++..   ..+.+..|+....  ..
T Consensus        29 ~~e~iAv~pdG~l~vt--~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~---~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVT--NHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW---NADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEE--ETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEE---CTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEE--eCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEec---CCceEEEEEecccccce
Confidence            4778999999997665  35567898888776533322 466789999999999777765   4567777775532  22


Q ss_pred             --EEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756          161 --LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  202 (321)
Q Consensus       161 --i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~  202 (321)
                        +..... .....+.+.++|+++++...      +..+..++..
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~------~~~i~~~~~~  142 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSY------RGAIWLIDVV  142 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETT------TTEEEEEETT
T ss_pred             eeccccCCccccceeEEccCCCEEeeccc------cccceeeecc
Confidence              222222 25677999999998877653      4444444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.57  E-value=0.0024  Score=55.39  Aligned_cols=128  Identities=11%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCC----EEEEEEccCCCeEEEEeCCCc-e------eEEeC---CcCeee
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS----EFAVVYGFMPASATIFNKKCR-P------ILELG---SGPYNT  128 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~----~l~~~~g~~~~~i~i~d~~~~-~------~~~~~---~~~~~~  128 (321)
                      .+|.++.+|......  ..-..-+.++|+|+++    .|.++ ....+.|..||+... .      ...+.   ...-..
T Consensus       154 ~v~~~~~dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~-d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         154 SIYCFTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVA-ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEE-ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             eEEEEeecCceeEee--CCcceeeeeEECCCCCcceeEEEEE-eecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            477777776533222  1222346889999775    45554 455678988887422 1      12221   122345


Q ss_pred             EEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      +++..+|++.+...   ..+.|.+||.+.++.+..+..  ...++++|.||++.|....+     ..+.|...+.
T Consensus       231 iavD~~GnlyVa~~---~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~-----~~g~i~~~~~  297 (314)
T d1pjxa_         231 MDFDEDNNLLVANW---GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH-----ENNAVWKFEW  297 (314)
T ss_dssp             EEEBTTCCEEEEEE---TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET-----TTTEEEEEEC
T ss_pred             eEEecCCcEEEEEc---CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC-----CCCcEEEEEC
Confidence            88999999766654   458999999987766555544  37888999999986655553     2455555554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.94  E-value=0.075  Score=47.45  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=67.2

Q ss_pred             CeEEEEECcCCCEEEEEE---ccCCCeEEEEeCCCceeEE--eCCcCeeeEEEcCCCCeEEEEccC-------------C
Q 020756           84 PVHDVQWSYSGSEFAVVY---GFMPASATIFNKKCRPILE--LGSGPYNTVRWNPKGKFLCLAGFG-------------N  145 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~---g~~~~~i~i~d~~~~~~~~--~~~~~~~~~~~sPdG~~l~~~g~~-------------n  145 (321)
                      .+..+++||||+++++..   |..-..++++|+.++....  +.......+.|++|++.|+.....             +
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            345678899999999754   2223389999997765443  333334679999999998876431             1


Q ss_pred             CCCcEEEEECCCC----eEEEeeeCC--CeeeEEEccCCCEEEEEE
Q 020756          146 LPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       146 ~~g~i~iwD~~~~----~~i~~~~~~--~~~~~~wSpdG~~l~t~~  185 (321)
                      ....|+++.+.+.    ..+......  ....+..|.||++++...
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence            2346888887664    233332222  355677899999988654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.59  Score=38.52  Aligned_cols=158  Identities=11%  Similarity=0.040  Sum_probs=99.0

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc----eeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  105 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~----~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~  105 (321)
                      +.+.+.|++..+.|+..     |.      +...|+....++..    ...+.......+.+++..+.++.|.++. ...
T Consensus        31 ~~~~id~d~~~~~lYw~-----D~------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d-~~~   98 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWS-----DL------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVL   98 (266)
T ss_dssp             SEEEEEEETTTTEEEEE-----ET------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-TTT
T ss_pred             ceEEEEEEeCCCEEEEE-----EC------CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEe-cCC
Confidence            34556677776766553     11      12235555555421    1112222234567888888888888763 345


Q ss_pred             CeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCE
Q 020756          106 ASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRY  180 (321)
Q Consensus       106 ~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~  180 (321)
                      ++|.++++.+.....+   .......+...|...+|..+..+ ..+.|+-.+++..........  .....+++++.++.
T Consensus        99 ~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~  177 (266)
T d1ijqa1          99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  177 (266)
T ss_dssp             TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred             CEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCceecccccccceeeEEEeeccccE
Confidence            6899999987755443   34556789999988888877543 346788888864433332222  36778999999888


Q ss_pred             EEEEEcCCceeecCcEEEEeecCce
Q 020756          181 FMTATTAPRLQIDNGIKIFHHNGSL  205 (321)
Q Consensus       181 l~t~~s~~rl~~d~~v~iw~~~g~~  205 (321)
                      |..+..     ..+.|...+++|..
T Consensus       178 lYw~d~-----~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         178 LYWVDS-----KLHSISSIDVNGGN  197 (266)
T ss_dssp             EEEEET-----TTTEEEEEETTSCS
T ss_pred             EEEecC-----CcCEEEEEECCCCC
Confidence            888765     36778888887753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.72  Score=37.93  Aligned_cols=159  Identities=6%  Similarity=-0.066  Sum_probs=102.5

Q ss_pred             cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 020756           31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  110 (321)
Q Consensus        31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i  110 (321)
                      ...+.+....+.|...     |.      ....|+.+..+|.....+....-+.+.+++...-++.|.++. ...+.|.+
T Consensus        38 ~~~ld~D~~~~~iyws-----d~------~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d-~~~~~I~~  105 (263)
T d1npea_          38 IIGLAFDCVDKVVYWT-----DI------SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD-SQLDRIEV  105 (263)
T ss_dssp             EEEEEEETTTTEEEEE-----ET------TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE-TTTTEEEE
T ss_pred             EEEEEEEeCCCEEEEE-----EC------CCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEec-cCCCEEEE
Confidence            3345566555665542     11      223477778777644444322335678899988788787763 44669999


Q ss_pred             EeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEE
Q 020756          111 FNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTAT  185 (321)
Q Consensus       111 ~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~  185 (321)
                      .++.+.....+   +......++..|...+|.....+...+.|.-.+++..........  .....+++++.++.|..+.
T Consensus       106 ~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d  185 (263)
T d1npea_         106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD  185 (263)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEe
Confidence            99977654444   335677899999999888876443344577777764432222222  3567899999888887776


Q ss_pred             cCCceeecCcEEEEeecCcee
Q 020756          186 TAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       186 s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      .     ..+.|...+++|...
T Consensus       186 ~-----~~~~I~~~~~~g~~~  201 (263)
T d1npea_         186 A-----GTHRAECLNPAQPGR  201 (263)
T ss_dssp             T-----TTTEEEEEETTEEEE
T ss_pred             C-----CCCEEEEEECCCCCe
Confidence            4     367788888887654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.38  E-value=0.24  Score=42.48  Aligned_cols=117  Identities=9%  Similarity=0.108  Sum_probs=70.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCC-------C---eEEEEeCCCceeEE---e---CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756           84 PVHDVQWSYSGSEFAVVYGFMP-------A---SATIFNKKCRPILE---L---GSGPYNTVRWNPKGKFLCLAGFGNLP  147 (321)
Q Consensus        84 ~v~~~~wsP~g~~l~~~~g~~~-------~---~i~i~d~~~~~~~~---~---~~~~~~~~~~sPdG~~l~~~g~~n~~  147 (321)
                      +++...-..+|+.+++- |..+       .   .+.+||...+....   .   +........+.++|++++.++.+  .
T Consensus        21 ~~~~a~~~~~gkv~v~G-G~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~--~   97 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWS-SYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--A   97 (387)
T ss_dssp             CSEEEEETTTTEEEEEE-ECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--T
T ss_pred             ccEEEEEeeCCEEEEEE-eecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC--C
Confidence            44445555566655542 3211       1   36789987653322   2   23334567899999999988733  3


Q ss_pred             CcEEEEECCCCeEEEe--eeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756          148 GDMAFWDYVDGKQLGT--TRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       148 g~i~iwD~~~~~~i~~--~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      ..+++||..+..-...  .... .-...+..+||+.++.++.......-+.+.+||...
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            6899999987754322  2111 334567788999999987533333345688888743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.23  E-value=1.3  Score=37.33  Aligned_cols=182  Identities=9%  Similarity=0.129  Sum_probs=108.5

Q ss_pred             eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--eecC---
Q 020756            6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPLR---   80 (321)
Q Consensus         6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--v~l~---   80 (321)
                      .++||++..   .+.+....+ ..+.+-.+|=.+...-++              .++.+|.|+.+|.....  +...   
T Consensus        84 ~LQiFnlet---K~klks~~~-~e~VvfWkWis~~~L~lV--------------T~taVYHW~~~g~s~P~k~fdR~~~L  145 (327)
T d1utca2          84 TLQIFNIEM---KSKMKAHTM-TDDVTFWKWISLNTVALV--------------TDNAVYHWSMEGESQPVKMFDRHSSL  145 (327)
T ss_dssp             EEEEEETTT---TEEEEEEEC-SSCCCEEEESSSSEEEEE--------------CSSEEEEEESSSSCCCEEEEECCGGG
T ss_pred             eEEEEehhH---hhhhceEEc-CCCcEEEEecCCCEEEEE--------------cCCceEEEcccCCCCchhhhhhcccc
Confidence            578888888   566665554 457777788766443333              23347888887753322  2211   


Q ss_pred             CCCCeEEEEECcCCCEEEEEE-----ccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCC-----eEEEEccCCCCCcE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVY-----GFMPASATIFNKKCRPILELGSGPYNTVRWNPKGK-----FLCLAGFGNLPGDM  150 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~-----g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~-----~l~~~g~~n~~g~i  150 (321)
                      ....|....-+++.+.++++.     +...|.+.||+.+.+.-+.+.........+--+|+     .++++.-+...+.+
T Consensus       146 ~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL  225 (327)
T d1utca2         146 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  225 (327)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred             cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence            245788899999999988752     11235788999976655555322223333433332     44444322234688


Q ss_pred             EEEECCCC--------eEEEeeeC------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEecc
Q 020756          151 AFWDYVDG--------KQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  211 (321)
Q Consensus       151 ~iwD~~~~--------~~i~~~~~------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~  211 (321)
                      .|.++...        ++...+.-      .-...+..|+.-..+..-+.      -+-+++||+ +|.+++....
T Consensus       226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK------~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec------CcEEEEEEcccccEEEEeec
Confidence            88887642        11111111      13455788887777777773      778999998 6777766544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.04  E-value=2.3  Score=36.21  Aligned_cols=159  Identities=13%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             eEEEEEcCCCceeeeecC--CC------CCeEEEEE--CcCCC-EEEEEE-ccCCCeEEEEeCC--Ccee---EEe---C
Q 020756           63 KLNYLTTDGTHEGLVPLR--KE------GPVHDVQW--SYSGS-EFAVVY-GFMPASATIFNKK--CRPI---LEL---G  122 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~--~~------~~v~~~~w--sP~g~-~l~~~~-g~~~~~i~i~d~~--~~~~---~~~---~  122 (321)
                      .+++++..........+.  ..      -.-|.+..  .++|+ +|+++- .....+|.+|++.  ...+   .++   .
T Consensus        69 ~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~  148 (340)
T d1v04a_          69 KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL  148 (340)
T ss_dssp             EEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT
T ss_pred             eEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCcc
Confidence            477777655432222221  11      12355544  56777 344442 1234588888873  2222   233   1


Q ss_pred             CcCeeeEEEcCCCCeEEEEcc--C------------CCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCC
Q 020756          123 SGPYNTVRWNPKGKFLCLAGF--G------------NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP  188 (321)
Q Consensus       123 ~~~~~~~~~sPdG~~l~~~g~--~------------n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~  188 (321)
                      ....|.+....+|+++++-..  .            ...+.+..||....+.+. ........+++|||+++|+.+.+  
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t--  225 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAEL--  225 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEG--
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeC--
Confidence            345789999999999888421  1            113455555554333222 12246778999999999999987  


Q ss_pred             ceeecCcEEEEeecCce--e--EEeccC-ceEEEEEecCCCCCC
Q 020756          189 RLQIDNGIKIFHHNGSL--F--FKKMFD-KLFQAEWKPVSPDKF  227 (321)
Q Consensus       189 rl~~d~~v~iw~~~g~~--l--~~~~~~-~~~~~~w~P~~~~~~  227 (321)
                         ....|++|++++..  .  ...... ..-++.+.+....++
T Consensus       226 ---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         226 ---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             ---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             ---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence               47889999986432  1  222222 234566665544444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.78  E-value=2.5  Score=35.95  Aligned_cols=173  Identities=10%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             CCceEEEEEcCCcCCCCceeeeeccc---------CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc
Q 020756            3 SPASVQIYACGKDLQSQPLARRSFFR---------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH   73 (321)
Q Consensus         3 ~p~~v~v~~~~~~~~~~~i~~~~~f~---------~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~   73 (321)
                      .+|.+-++++.+..  .......+..         ---.++.=..+|+..|+++.-.  ..+    ....++.+...+..
T Consensus        66 ~~G~i~~~dl~~~~--~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~--~~~----~~ieif~~~~~~~~  137 (340)
T d1v04a_          66 KSGKILLMDLNEKE--PAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP--GSS----STVEVFKFQEEEKS  137 (340)
T ss_dssp             CCCEEEEEETTSSS--CCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS--TTC----CEEEEEEEETTTTE
T ss_pred             CCCeEEEEecCCCC--CcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc--CCC----ceeEEEEEeCCCCe
Confidence            36888889987632  2222222221         1112222245666555553211  011    12345555544431


Q ss_pred             ee---eeecCCCCCeEEEEECcCCCEEEEEE-ccC--------------CCeEEEEeCCCceeEEeCCcCeeeEEEcCCC
Q 020756           74 EG---LVPLRKEGPVHDVQWSYSGSEFAVVY-GFM--------------PASATIFNKKCRPILELGSGPYNTVRWNPKG  135 (321)
Q Consensus        74 ~~---~v~l~~~~~v~~~~wsP~g~~l~~~~-g~~--------------~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG  135 (321)
                      ..   .+.-......+|+....+|..+++-. ...              .+.+..||.+...+..-+-...|-|+++||+
T Consensus       138 l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~  217 (340)
T d1v04a_         138 LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDG  217 (340)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTS
T ss_pred             EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCC
Confidence            11   11112345678999999997666621 110              1133344443322211144678999999999


Q ss_pred             CeEEEEccCCCCCcEEEEECCCCe---EEEeeeCC-CeeeEEEcc-CCCEEEEEE
Q 020756          136 KFLCLAGFGNLPGDMAFWDYVDGK---QLGTTRAE-CSVTSEWSP-DGRYFMTAT  185 (321)
Q Consensus       136 ~~l~~~g~~n~~g~i~iwD~~~~~---~i~~~~~~-~~~~~~wSp-dG~~l~t~~  185 (321)
                      ++|+++..  ..+.|.+|+++...   ......-+ ..-.+.+.+ +|.+.+.+.
T Consensus       218 ~~lyVa~t--~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         218 KYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             SEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CEEEEEeC--CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            99988873  45889999987432   22222222 344588887 455554443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.56  E-value=2.7  Score=35.34  Aligned_cols=77  Identities=6%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccC-CCeEEEEeCCCceeEEeCC----cCeeeEEEcCCCCeEEEEccCC---CCCcEEE
Q 020756           81 KEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGS----GPYNTVRWNPKGKFLCLAGFGN---LPGDMAF  152 (321)
Q Consensus        81 ~~~~v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~~~~~~~~----~~~~~~~~sPdG~~l~~~g~~n---~~g~i~i  152 (321)
                      +........+.++|+.+++  |.. ...+.+||...+....+..    ....+....+||++++++|..+   ...++++
T Consensus        74 ~~~~~~~~~~~~~g~i~v~--Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~  151 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVT--GGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV  151 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEE--CSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred             cccceeEEEEecCCcEEEe--ecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeee
Confidence            3334567789999987666  433 3589999998877776632    2234677888999999987432   2357999


Q ss_pred             EECCCCe
Q 020756          153 WDYVDGK  159 (321)
Q Consensus       153 wD~~~~~  159 (321)
                      ||..+.+
T Consensus       152 yd~~~~~  158 (387)
T d1k3ia3         152 YSPSSKT  158 (387)
T ss_dssp             EETTTTE
T ss_pred             ecCCCCc
Confidence            9998764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.41  E-value=4.2  Score=35.88  Aligned_cols=102  Identities=16%  Similarity=0.310  Sum_probs=57.5

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE---Ee--------CCcCeeeEEEcCC---CCeEEEEc-cCC--
Q 020756           83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---EL--------GSGPYNTVRWNPK---GKFLCLAG-FGN--  145 (321)
Q Consensus        83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~---~~--------~~~~~~~~~~sPd---G~~l~~~g-~~n--  145 (321)
                      ..-.+++|.|||+.|++.  ...++|.+++..+....   .+        +.+..-.++++|+   ..+|.++. ..+  
T Consensus        27 ~~P~~la~~pdg~llVte--r~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTE--RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             SSEEEEEECTTSCEEEEE--TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEE--ecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            345699999999987773  33578999987554333   22        2344567999995   33444421 100  


Q ss_pred             -----CCCc--EEEEECCCC--e------EEEe---eeCCCeeeEEEccCCCEEEEEEc
Q 020756          146 -----LPGD--MAFWDYVDG--K------QLGT---TRAECSVTSEWSPDGRYFMTATT  186 (321)
Q Consensus       146 -----~~g~--i~iwD~~~~--~------~i~~---~~~~~~~~~~wSpdG~~l~t~~s  186 (321)
                           ....  |..+.....  .      .+..   ...|..-.+.|.|||.++++.++
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                 0111  223332221  1      1111   11256778999999998887664

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.47  E-value=6.5  Score=34.64  Aligned_cols=68  Identities=15%  Similarity=0.261  Sum_probs=46.8

Q ss_pred             eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe------------EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeec
Q 020756          127 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK------------QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQID  193 (321)
Q Consensus       127 ~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~------------~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d  193 (321)
                      ..+..+|||++|++++  .++.++.++|+++..            .+...+. ......+|+.+|.  |..+.    -.|
T Consensus       278 HGV~vSPDGKyi~VaG--KLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~--aytsl----fid  349 (459)
T d1fwxa2         278 HGCNMAPDKKHLCVAG--KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN--AYTSL----FLD  349 (459)
T ss_dssp             CCEEECTTSSEEEEEC--TTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE--EEEEE----TTT
T ss_pred             CceEECCCCCEEEEeC--CcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCce--EEEEe----ecc
Confidence            4579999999999988  467999999997421            1122221 2556678988884  33332    269


Q ss_pred             CcEEEEeec
Q 020756          194 NGIKIFHHN  202 (321)
Q Consensus       194 ~~v~iw~~~  202 (321)
                      ..+.-|++.
T Consensus       350 s~v~kw~~~  358 (459)
T d1fwxa2         350 SQVVKWNIE  358 (459)
T ss_dssp             TEEEEEEHH
T ss_pred             ceEEEEecc
Confidence            999999983

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=4.9  Score=32.50  Aligned_cols=130  Identities=9%  Similarity=-0.079  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEE
Q 020756           63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC  139 (321)
Q Consensus        63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~  139 (321)
                      .++.++.+|.....+.........+++.+|....+.+......+.|.-.++++.....+   +-...+.+++.+.++.|.
T Consensus       100 ~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY  179 (266)
T ss_dssp             EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             EEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEE
Confidence            46666666664433333334567889999977777765433445788888887766655   234568899999999888


Q ss_pred             EEccCCCCCcEEEEECCCCeE--EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756          140 LAGFGNLPGDMAFWDYVDGKQ--LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  201 (321)
Q Consensus       140 ~~g~~n~~g~i~iwD~~~~~~--i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~  201 (321)
                      .+..  ..+.|+..|++....  +......  ....++..  +.+|..+..     .++.|...+.
T Consensus       180 w~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~-----~~~~I~~~~~  236 (266)
T d1ijqa1         180 WVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI-----INEAIFSANR  236 (266)
T ss_dssp             EEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET-----TTTEEEEEET
T ss_pred             EecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEEC-----CCCeEEEEEC
Confidence            8863  357899999865432  2222221  33444444  455655543     2555555543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.52  E-value=5.9  Score=34.81  Aligned_cols=101  Identities=11%  Similarity=0.124  Sum_probs=53.9

Q ss_pred             ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eec-------CCCCCeEEEEECcC---CCEEE
Q 020756           30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPL-------RKEGPVHDVQWSYS---GSEFA   98 (321)
Q Consensus        30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l-------~~~~~v~~~~wsP~---g~~l~   98 (321)
                      .-..|.|.|+|+.++.-     ..+|       .|+.++..+..... ..+       .-++...+++++|+   ..+|.
T Consensus        28 ~P~~la~~pdg~llVte-----r~~G-------~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iY   95 (450)
T d1crua_          28 KPHALLWGPDNQIWLTE-----RATG-------KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (450)
T ss_dssp             SEEEEEECTTSCEEEEE-----TTTC-------EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             CceEEEEeCCCeEEEEE-----ecCC-------EEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEE
Confidence            55689999999865442     0122       25666544432222 111       12567889999995   44555


Q ss_pred             EEEccC---------CCe--EEEEeCC--Cc------ee-EEe---CCcCeeeEEEcCCCCeEEEEc
Q 020756           99 VVYGFM---------PAS--ATIFNKK--CR------PI-LEL---GSGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        99 ~~~g~~---------~~~--i~i~d~~--~~------~~-~~~---~~~~~~~~~~sPdG~~l~~~g  142 (321)
                      +.+...         ...  +..+...  ..      .+ ..+   .......+.|.|||.+.++.|
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence            543211         011  2223221  11      11 111   234567899999999777766

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.49  E-value=6.6  Score=33.48  Aligned_cols=180  Identities=11%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             EEEEEcCCcCCCCceeeeecccCccceEEe--CCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC----
Q 020756            7 VQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----   80 (321)
Q Consensus         7 v~v~~~~~~~~~~~i~~~~~f~~~~~~~~W--sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~----   80 (321)
                      |.+|++ +   ++.+......+...+++.-  .-.|...-+++.++.+.....    ..+|.++........+...    
T Consensus        52 l~vYdL-~---G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~----l~~~~id~~~~~l~~~~~~~~p~  123 (353)
T d1h6la_          52 LAVYSL-E---GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT----IEIYAIDGKNGTLQSITDPNRPI  123 (353)
T ss_dssp             CEEEET-T---CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCE----EEEEEEETTTTEEEECSCSSSCE
T ss_pred             EEEEcC-C---CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCccee----EEEEEecCccccccccccccccc
Confidence            677776 3   5677666655555555553  233333322222222211111    1244444333212222111    


Q ss_pred             --CCCCeEEEEE--CcC-CCEEEEEEccCCCeEEEEeC---C-C----ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756           81 --KEGPVHDVQW--SYS-GSEFAVVYGFMPASATIFNK---K-C----RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNL  146 (321)
Q Consensus        81 --~~~~v~~~~w--sP~-g~~l~~~~g~~~~~i~i~d~---~-~----~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~  146 (321)
                        ....++.++.  +|. |...+++ ....+.+..|.+   . +    ..+.+| -...+..+.+.+..+.|.++-   .
T Consensus       124 ~~~~~~vYGlc~y~~~~~g~~~afv-~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisE---E  199 (353)
T d1h6la_         124 ASAIDEVYGFSLYHSQKTGKYYAMV-TGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAE---E  199 (353)
T ss_dssp             ECSSSSCCCEEEEECTTTCCEEEEE-ECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEE---T
T ss_pred             ccccCcceEEEEEecCCCCeEEEEE-EcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEec---C
Confidence              1224667776  775 5555555 345677777755   1 1    244455 345677899999999999886   5


Q ss_pred             CCcEEEEECC-----CCeEEEeeeC-C---Cee--eEEEccCCC-EEEEEEcCCceeecCcEEEEeecC
Q 020756          147 PGDMAFWDYV-----DGKQLGTTRA-E---CSV--TSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNG  203 (321)
Q Consensus       147 ~g~i~iwD~~-----~~~~i~~~~~-~---~~~--~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~g  203 (321)
                      +..|+.++.+     .+..+..... +   .+-  .+--..+|. ||++++.     .++.+.||+..+
T Consensus       200 ~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ-----G~n~f~vydr~~  263 (353)
T d1h6la_         200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ-----GNSSYAIYERQG  263 (353)
T ss_dssp             TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG-----GGTEEEEEESST
T ss_pred             ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC-----CCCeEEEEecCC
Confidence            5567777654     1233333222 1   222  233455666 6665553     589999999865

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.98  E-value=8.9  Score=30.60  Aligned_cols=132  Identities=22%  Similarity=0.231  Sum_probs=73.0

Q ss_pred             ceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE--ccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCC
Q 020756           61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY--GFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGK  136 (321)
Q Consensus        61 ~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~--g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~  136 (321)
                      ++.||.++-.+ -.+...+...+-|+|+    .|++++-..  +..+....+-|+....+.-|  ..+.++...++|..+
T Consensus       125 ~~~LYviegGk-lrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnK  199 (313)
T d2hu7a1         125 RVALYALDGGG-LRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMK  199 (313)
T ss_dssp             CEEEEEEETTE-EEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSC
T ss_pred             ceEEEEEeCCc-eeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccceeEccCce
Confidence            44577765333 2344444444555555    356655331  22223344446744444444  677888999998766


Q ss_pred             eEEEEccCCCC-CcEEEEECCCCeEEE-eeeCC-----Ceee---EEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756          137 FLCLAGFGNLP-GDMAFWDYVDGKQLG-TTRAE-----CSVT---SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  206 (321)
Q Consensus       137 ~l~~~g~~n~~-g~i~iwD~~~~~~i~-~~~~~-----~~~~---~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l  206 (321)
                      .  ++++.|.. ..+.-+|.++++--. .+...     ..+.   +-+.||+++++.+.      .|+.-.++. +|+++
T Consensus       200 V--~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak------rdG~s~lF~-nGk~i  270 (313)
T d2hu7a1         200 V--TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR------REGRSAVFI-DGERV  270 (313)
T ss_dssp             E--EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE------ETTEEEEEE-TTEEE
T ss_pred             e--eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe------cCCchheee-cceEe
Confidence            5  44443322 233345887664222 12211     2233   44799999977777      488888874 77766

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.98  E-value=9.1  Score=30.74  Aligned_cols=136  Identities=7%  Similarity=-0.047  Sum_probs=82.7

Q ss_pred             eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCe
Q 020756           62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKF  137 (321)
Q Consensus        62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~-~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~  137 (321)
                      ..+..++.+|.....+.-.......+++.+|.+.++...... ....|.-.++++.....+   +-...+.+++.+.++.
T Consensus       101 ~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~  180 (263)
T d1npea_         101 DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ  180 (263)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred             CEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcE
Confidence            356677777764333322223567899999988877765432 233566667776554444   2345578999999998


Q ss_pred             EEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756          138 LCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  206 (321)
Q Consensus       138 l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l  206 (321)
                      |..+..  ..+.|...|++.......+.. .....+++.  +.+|..+..     ..+.|...|.. |+.+
T Consensus       181 lYw~d~--~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~-----~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         181 LCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDW-----KTNSVIAMDLAISKEM  242 (263)
T ss_dssp             EEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEET-----TTTEEEEEETTTTEEE
T ss_pred             EEEEeC--CCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEEC-----CCCEEEEEECCCCccc
Confidence            888763  347899999965543333333 234455553  556665553     25667777764 4444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.42  E-value=14  Score=31.70  Aligned_cols=197  Identities=10%  Similarity=0.063  Sum_probs=95.4

Q ss_pred             ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCce----eecceeEEEEEcCCCceeeeec-
Q 020756            5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS----YYGESKLNYLTTDGTHEGLVPL-   79 (321)
Q Consensus         5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s----~~g~~~l~~l~~~g~~~~~v~l-   79 (321)
                      ..|+++++.+   ++.+. ..+-.+....+.|.+|++.|++......+.....    ..--..+++-.+.......+.+ 
T Consensus       151 ~~l~v~Dl~t---g~~~~-~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~  226 (430)
T d1qfma1         151 VTIKFMKVDG---AKELP-DVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA  226 (430)
T ss_dssp             EEEEEEETTT---TEEEE-EEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred             heeEEeccCc---ceecc-cccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccc
Confidence            3578888888   55442 2222233357899999999988642211111110    0001234444444432322222 


Q ss_pred             -CCC--CCeEEEEECcCCCEEEEEEcc-CCC--eEEEEeCCCc---------eeEEeC--CcCeeeEEEcCCCCeEEEEc
Q 020756           80 -RKE--GPVHDVQWSYSGSEFAVVYGF-MPA--SATIFNKKCR---------PILELG--SGPYNTVRWNPKGKFLCLAG  142 (321)
Q Consensus        80 -~~~--~~v~~~~wsP~g~~l~~~~g~-~~~--~i~i~d~~~~---------~~~~~~--~~~~~~~~~sPdG~~l~~~g  142 (321)
                       ...  .-+..+..+.+|+++++.... ...  .+.+.|+...         ....+.  ......+ -+.++.+++.+.
T Consensus       227 ~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn  305 (430)
T d1qfma1         227 EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTN  305 (430)
T ss_dssp             CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred             ccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccC
Confidence             222  346678889999988764322 222  3444554211         111121  2222222 223344555554


Q ss_pred             cCCCCCcEEEEECCCCeE---EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe
Q 020756          143 FGNLPGDMAFWDYVDGKQ---LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK  209 (321)
Q Consensus       143 ~~n~~g~i~iwD~~~~~~---i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~  209 (321)
                      ...-++.|...++.+...   ...+..+  .+..-.++..+.+|+....   ..+-..|+|+++.+......
T Consensus       306 ~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~---~~~~~~l~v~~~~~~~~~~~  374 (430)
T d1qfma1         306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL---HDVKNTLQLHDLATGALLKI  374 (430)
T ss_dssp             TTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE---ETTEEEEEEEETTTCCEEEE
T ss_pred             cccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEE---cCCEeEEEEEECCCCcEEEe
Confidence            332457787788765421   1122222  3333345566667776652   01223578888876655433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.15  E-value=13  Score=31.08  Aligned_cols=152  Identities=15%  Similarity=0.183  Sum_probs=93.3

Q ss_pred             CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756            2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK   81 (321)
Q Consensus         2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~   81 (321)
                      |.-.+|.|-++.+   ...+..+. .++|.+-|.++.  ..|++-+             ...|..+++... ++.-....
T Consensus        42 ~~~~~VvIidl~n---~~~~~Rrp-i~AdsAIMhP~~--~IiALra-------------g~~LQiFnletK-~klks~~~  101 (327)
T d1utca2          42 GEQAQVVIIDMND---PSNPIRRP-ISADSAIMNPAS--KVIALKA-------------GKTLQIFNIEMK-SKMKAHTM  101 (327)
T ss_dssp             TTEEEEEEEETTS---TTSCEEEE-CCCSEEEECSSS--SEEEEEE-------------TTEEEEEETTTT-EEEEEEEC
T ss_pred             CCCceEEEEECCC---CCcceecc-cchhhhhcCCCC--cEEEEec-------------CCeEEEEehhHh-hhhceEEc
Confidence            3446788888887   34443443 478888776444  4444421             223666666554 34333334


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe--C----CcCeeeEEEcCCCCeEEEEccCC----CCCc
Q 020756           82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--G----SGPYNTVRWNPKGKFLCLAGFGN----LPGD  149 (321)
Q Consensus        82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~----~~~~~~~~~sPdG~~l~~~g~~n----~~g~  149 (321)
                      .++|.-=.|-.+ +.|+++.   +..++-|++++  .+..-|  +    ...+-...-+++++++++.|...    ..|.
T Consensus       102 ~e~VvfWkWis~-~~L~lVT---~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~  177 (327)
T d1utca2         102 TDDVTFWKWISL-NTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  177 (327)
T ss_dssp             SSCCCEEEESSS-SEEEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEecCC-CEEEEEc---CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEE
Confidence            567777788543 4567663   34799999954  466555  2    23455567889999999987522    2578


Q ss_pred             EEEEECCCCeEEEeeeCCCeeeEEEccCC
Q 020756          150 MAFWDYVDGKQLGTTRAECSVTSEWSPDG  178 (321)
Q Consensus       150 i~iwD~~~~~~i~~~~~~~~~~~~wSpdG  178 (321)
                      |.+|..+.. .-..+++|...-..+--+|
T Consensus       178 mQLYS~er~-~sQ~ieGhaa~F~~~~~~g  205 (327)
T d1utca2         178 MQLYSVDRK-VSQPIEGHAASFAQFKMEG  205 (327)
T ss_dssp             EEEEETTTT-EEEEECCSEEEEEEECCTT
T ss_pred             EEEEEeccC-cCccccceeeeeEEEEcCC
Confidence            999998654 4455667755555554443