Citrus Sinensis ID: 020784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLRTL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccEEEccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHEEEEcccccccEEHHHHHHcccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccccEEEEEccccccccEEEEccccccEEEEEccccccEEEEEEcccccccEEEccccHHHHEEEcccccEEEEEccccEEEEEEEcccccEEEEEEccccHHHHcccHcHHHHHHHccc
Coil and Loop (DISEMBL)
maalsaysspwpeptpdpnpnpnpnsntscgvssedqtDQLQSlesfssmpqdepdsfspsipesnpnyqmplpspaestsssppptllhisfnqdhgcfaagtdhgfriyncdpfrEIFRRDFERGGGIGVVEMLFRCNILalvgggpdpqyplnkvmiwddhqsrcigeLSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIanpkglcavsqgVGSLVLvcpglqkgqvRVEHYASKRTKFIMAHDSRIACFAltqdgqllatsstkGTLVRIFNTLdgtllqeeccpsisaqsglWLSSAWLRVLRTL
Flexible Loop (DISEMBL)
MAAlsaysspwpeptpdpnpnpnPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGElsfrsevrsvklrrdriivvlEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLlatsstkgtlVRIFNTLDGTLLQEECCPsisaqsglwlssAWLRVLRTL
Low Complexity Region (SEG)
MAALSAYsspwpeptpdpnpnpnpnsntsCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMplpspaestsssppptllHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLRTL
Disordered region (IsUnstruct)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL***
Disordered Region (DISOPRED)
****************************************************************************************LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLRTL
Disordered Region (DISEMBL)
******************NPNPNPNSN**************QSLE***************SIPESNPNYQMP************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLRTL
Disordered Region (DISPRO)
*AALSAYSSPWPEPTPDP******************************************************************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLRTL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLRTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q640T2	344	WD repeat domain phosphoi	yes	no	0.647	0.604	0.509	6e-54
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.647	0.604	0.504	2e-53
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.647	0.604	0.509	2e-53
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.647	0.604	0.509	2e-53
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.647	0.604	0.509	2e-53
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.647	0.604	0.504	5e-53
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.647	0.604	0.495	6e-52
Q9Y484	360	WD repeat domain phosphoi	no	no	0.616	0.55	0.402	1e-37
Q5QA93	360	SVP1-like protein 2 OS=Pi	N/A	no	0.691	0.616	0.379	3e-37
Q91VM3	360	WD repeat domain phosphoi	no	no	0.623	0.555	0.4	3e-37

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  211 bits (537), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   A+  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Gallus gallus (taxid: 9031)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Pongo abelii (taxid: 9601)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Mus musculus (taxid: 10090)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Homo sapiens (taxid: 9606)

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  208 bits (529), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 141/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +  VEMLFRCN LALVGG
Sbjct: 13  LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VSYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Xenopus laevis (taxid: 8355)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  204 bits (520), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 138/212 (65%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  + +F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  P    G V++   A+  K    I AH+  + C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVDIPAHEGVLCCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            L   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQE 223

Danio rerio (taxid: 7955)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 127/211 (60%), Gaps = 13/211 (6%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVGGG  
Sbjct: 12  LRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSS 71

Query: 151 PQYPLNKVMIWD------DHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204
           P++    V+IWD      D + + + E +F   V SV++R D+I++VL+ +I+VY+F D 
Sbjct: 72  PKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDN 131

Query: 205 -KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAH 257
            + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         I AH
Sbjct: 132 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAH 191

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNT 288
            S IAC +L Q G ++A++S KGTL+R+F+T
Sbjct: 192 QSDIACVSLNQPGTVVASASQKGTLIRLFDT 222

Homo sapiens (taxid: 9606)

>sp|Q5QA93|HSV2_PICAN SVP1-like protein 2 OS=Pichia angusta GN=HSV2 PE=3 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 71  MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI 130
           M    P ES  +  P  +L+ +FNQD  CFA   + GF++YN DP     +R F   GG+
Sbjct: 1   MNTHRPIESVRAHEP-AVLNAAFNQDQTCFAVCHESGFQVYNTDPMELRMKRTFSTNGGV 59

Query: 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV 190
           G++ ML R N +ALVGGG  P++P+NK+ IWDD + +    L F S + +V L R  I+V
Sbjct: 60  GLIAMLHRTNYVALVGGGRQPRFPVNKLCIWDDLKKKPSIMLEFMSPILNVLLSRILIVV 119

Query: 191 VLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-----E 244
           VL+ K+ ++ F    KLL Q ET  N  G+  +S    +  L  PG   GQ+++      
Sbjct: 120 VLKNKVLIHAFESKPKLLAQHETYDNEAGVAELSVNEQTSFLAFPGRAIGQIQLVDVSPA 179

Query: 245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           H        I AH SRI C A++  G L+A++S  GT++RI +T   +L
Sbjct: 180 HRDRNLISIIKAHKSRIQCLAISNSGLLIASASQTGTIIRIHDTAKCSL 228

Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways.

Pichia angusta (taxid: 870730)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 15/215 (6%)

Query: 87  TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG 146
           T LH  FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVG
Sbjct: 10  TSLH--FNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVG 67

Query: 147 GGPDPQYPLNKVMIWD------DHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
           GG  P++    V+IWD      D + + + E +F   V +V++R D+I++VL  +I+VY+
Sbjct: 68  GGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYS 127

Query: 201 FADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------F 253
           F D  + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         
Sbjct: 128 FPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFT 187

Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288
           I AH S +AC +L Q G ++A++S KGTL+R+F+T
Sbjct: 188 INAHQSDVACVSLNQPGTVVASASQKGTLIRLFDT 222

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
240255692	396	transducin/WD40 domain-containing protei	0.869	0.704	0.729	1e-120
7362757	432	putative protein [Arabidopsis thaliana]	0.869	0.645	0.729	1e-120
240255690	425	transducin/WD40 domain-containing protei	0.869	0.656	0.729	1e-120
225436703	439	PREDICTED: WD repeat domain phosphoinosi	0.894	0.653	0.726	1e-119
147775635	428	hypothetical protein VITISV_032850 [Viti	0.894	0.670	0.726	1e-119
297821186	432	AT3g62770/F26K9_200 [Arabidopsis lyrata	0.800	0.594	0.776	1e-118
255582144	447	WD-repeat protein, putative [Ricinus com	0.785	0.563	0.819	1e-112
297824875	413	predicted protein [Arabidopsis lyrata su	0.744	0.578	0.812	1e-111
225450815	425	PREDICTED: WD repeat domain phosphoinosi	0.725	0.548	0.820	1e-109
449436529	420	PREDICTED: WD repeat domain phosphoinosi	0.872	0.666	0.695	1e-109

>gi|240255692|ref|NP_001030918.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332646869|gb|AEE80390.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/303 (72%), Positives = 246/303 (81%), Gaps = 24/303 (7%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQE 296
            QE
Sbjct: 284 RQE 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7362757|emb|CAB83127.1| putative protein [Arabidopsis thaliana]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/303 (72%), Positives = 246/303 (81%), Gaps = 24/303 (7%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQE 296
            QE
Sbjct: 284 RQE 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255690|ref|NP_567132.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|14517420|gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|16323362|gb|AAL15394.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|332646868|gb|AEE80389.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/303 (72%), Positives = 246/303 (81%), Gaps = 24/303 (7%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQE 296
            QE
Sbjct: 284 RQE 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436703|ref|XP_002263976.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/307 (72%), Positives = 248/307 (80%), Gaps = 20/307 (6%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQE 296
           DGT LQE
Sbjct: 292 DGTRLQE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775635|emb|CAN67189.1| hypothetical protein VITISV_032850 [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/307 (72%), Positives = 248/307 (80%), Gaps = 20/307 (6%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQE 296
           DGT LQE
Sbjct: 292 DGTRLQE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821186|ref|XP_002878476.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata] gi|297324314|gb|EFH54735.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/264 (77%), Positives = 228/264 (86%), Gaps = 7/264 (2%)

Query: 33  SSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHIS 92
           S  D+ D+  SL+SFSSM      S +   P  N N Q P+  P  +   +PPP++LH+S
Sbjct: 30  SHRDRGDETDSLDSFSSM------SLNSDEPNQNSN-QSPISPPTPNLPVTPPPSVLHLS 82

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ
Sbjct: 83  FNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQ 142

Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           YP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIET
Sbjct: 143 YPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIET 202

Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL 272
           IANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG L
Sbjct: 203 IANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHL 262

Query: 273 LATSSTKGTLVRIFNTLDGTLLQE 296
           LAT+S+KGTLVR+FNT+DGTL QE
Sbjct: 263 LATASSKGTLVRVFNTVDGTLRQE 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582144|ref|XP_002531866.1| WD-repeat protein, putative [Ricinus communis] gi|223528474|gb|EEF30503.1| WD-repeat protein, putative [Ricinus communis]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/266 (81%), Positives = 230/266 (86%), Gaps = 14/266 (5%)

Query: 40  QLQSLESFSS-MPQDE--PDSFSPSIPESNPNYQMPLPSPAESTSSSPPP----TLLHIS 92
           Q QS ++ SS MPQD   PD   P     NPNY       A+S+++SPP     +LLH+S
Sbjct: 46  QSQSYDTLSSIMPQDHCIPDHSDP-----NPNYHHHARPAADSSTTSPPSSPPISLLHLS 100

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPD 150
           FNQD GCFAAGTDHGFRIYNCDPFREIFRRDF+RGGG G  VVEMLFRCNILALVGGG D
Sbjct: 101 FNQDFGCFAAGTDHGFRIYNCDPFREIFRRDFDRGGGGGIGVVEMLFRCNILALVGGGSD 160

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
           PQYP NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI
Sbjct: 161 PQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 220

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           ETIANPKGLCAVS G GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG
Sbjct: 221 ETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 280

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
           QLLAT+STKGTLVR+FNT DG+LLQE
Sbjct: 281 QLLATASTKGTLVRVFNTADGSLLQE 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824875|ref|XP_002880320.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326159|gb|EFH56579.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/240 (81%), Positives = 215/240 (89%), Gaps = 1/240 (0%)

Query: 57  SFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF 116
           SFS + P S+ +    L S   S+ ++P P+LLHISFNQD+GCFA GTD GFRI+NCDPF
Sbjct: 22  SFSSTAPHSDDDSDRQLDSN-PSSPATPLPSLLHISFNQDYGCFAVGTDCGFRIFNCDPF 80

Query: 117 REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
            EIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ+P  KVMIWDDHQ+RCIGELSFRS
Sbjct: 81  SEIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQHPPCKVMIWDDHQNRCIGELSFRS 140

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           +VRS++LRRDRIIVVLEQKIFVYNFADLKL+HQIETIANPKGLCAVSQG GSLVLVCPGL
Sbjct: 141 DVRSLRLRRDRIIVVLEQKIFVYNFADLKLMHQIETIANPKGLCAVSQGAGSLVLVCPGL 200

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           QKGQVRVEHYASKRTKFIMAHDSRIACFALTQD  LLAT+S KGTL+R+FNT DGTLLQE
Sbjct: 201 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDAHLLATASFKGTLLRVFNTADGTLLQE 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450815|ref|XP_002283982.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/240 (82%), Positives = 211/240 (87%), Gaps = 7/240 (2%)

Query: 62  IPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR 121
           +PES  N    +P P+   +  P PTLLH+SFNQDHGCF+AGTDHGFRIYNCDPFREIFR
Sbjct: 47  LPESEYN-DDSVP-PSADPTRFPAPTLLHLSFNQDHGCFSAGTDHGFRIYNCDPFREIFR 104

Query: 122 RDF-----ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
           RDF       G GIGVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ+RCIGELSFRS
Sbjct: 105 RDFCGDDGGSGTGIGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQTRCIGELSFRS 164

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           EV+SV+LRRDRI+ +L QKIFVYNFADLKLLHQIETIANPKGLC VSQ  GS+VLVCPGL
Sbjct: 165 EVKSVRLRRDRIVAILLQKIFVYNFADLKLLHQIETIANPKGLCEVSQLSGSMVLVCPGL 224

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            KGQVRVEHY SKRTKFIMAHDSRIACFALTQDG+LLATSS+KGTLVRIFNTLDGTLLQE
Sbjct: 225 LKGQVRVEHYNSKRTKFIMAHDSRIACFALTQDGRLLATSSSKGTLVRIFNTLDGTLLQE 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436529|ref|XP_004136045.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus] gi|449533312|ref|XP_004173620.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/296 (69%), Positives = 222/296 (75%), Gaps = 16/296 (5%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSP 60
           M  LSA+ SP        +      +            D   S E F           S 
Sbjct: 1   METLSAFPSPPWPNPNPNSNPSPNPNPNPNPNPPSAVADS-SSSERFD----------SD 49

Query: 61  SIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF 120
           S+   +P    P   P  S      P+LLH+SFNQDHGCFAAGTD GFRIYNCDPFREIF
Sbjct: 50  SVSSVDPTGLSPAVEPPAS-----QPSLLHLSFNQDHGCFAAGTDRGFRIYNCDPFREIF 104

Query: 121 RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS 180
           RRDF+RGGG+GVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQSRCIGELSFRS VR 
Sbjct: 105 RRDFDRGGGVGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSAVRG 164

Query: 181 VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
           V+L+RDRIIV+LEQK+FVYNFADLKLLHQIETIANPKGLCAVSQ   SLVLVCPGLQKGQ
Sbjct: 165 VRLQRDRIIVILEQKVFVYNFADLKLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQ 224

Query: 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           VRVEHYAS+RTKFIMAHDSRIACFALT +GQLLAT+STKGTLVRIFNT DG LLQE
Sbjct: 225 VRVEHYASRRTKFIMAHDSRIACFALTTNGQLLATASTKGTLVRIFNTFDGNLLQE 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.794	0.6	0.759	5.3e-104
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.644	0.452	0.787	6.7e-88
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.638	0.524	0.679	9e-77
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.638	0.491	0.684	3.9e-76
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.638	0.521	0.679	1.7e-75
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.629	0.577	0.585	4.7e-64
UNIPROTKB|Q22UW9	351	TTHERM_00577340 "WD repeat dom	0.638	0.584	0.526	7.5e-57
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.641	0.539	0.490	7.8e-55
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.635	0.545	0.516	1.9e-51
UNIPROTKB|Q640T2	344	wdr45b "WD repeat domain phosp	0.641	0.598	0.504	1.1e-50

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 202/266 (75%), Positives = 220/266 (82%)

Query:    33 SSEDQTDQLQSLESFSSMP--QDEPDSFSPSIPESNPNYQMXXXXXXXXXXXXXXXXXXH 90
             S  D+ D+  SL+SFSSM    DEP+  S   P S P   +                  H
Sbjct:    30 SHRDRVDEPDSLDSFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVL---------H 80

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +SFNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPD
Sbjct:    81 LSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPD 140

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
             PQYP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQI
Sbjct:   141 PQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQI 200

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ETIANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG
Sbjct:   201 ETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDG 260

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+S+KGTLVRIFNT+DGTL QE
Sbjct:   261 HLLATASSKGTLVRIFNTVDGTLRQE 286

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 170/216 (78%), Positives = 184/216 (85%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---------GGGIGVVEMLFRCN 140
             HISFNQD+GCFAAGT  GFRIYNCDPFREIFRRD            GGGIGVVEMLFRCN
Sbjct:   101 HISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCN 160

Query:   141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
             ILALVGGG  P YP NKVMIWDDHQSRCIGELSFRS VR V+LRRDRIIVVLE KIFVYN
Sbjct:   161 ILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYN 220

Query:   201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR 260
             FADLKL+HQIET  NPKGLCAVSQ  GS+VLVCPG QKGQVRVEHY +++TKFI AH SR
Sbjct:   221 FADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHTSR 280

Query:   261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
             +ACFAL+QDG+L+AT+STKGTLVRI+N  +G LLQE
Sbjct:   281 VACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQE 316

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 140/206 (67%), Positives = 170/206 (82%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    39 VSWNQDYSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 97

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP NKV+IWDDHQ RCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    98 SQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 157

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             E +ANP+GLC +S  + + VL CPG+++G+VRVEH+     + I AHDS IAC  LT DG
Sbjct:   158 ENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSNIACMTLTLDG 217

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+STKGTL+RIFNT+DGT LQE
Sbjct:   218 LLLATASTKGTLIRIFNTMDGTRLQE 243

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 141/206 (68%), Positives = 169/206 (82%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD GCFAAGT +GFRI+NCDPF+E FRRD  + GG G+VEMLFRCNILALVGGG +
Sbjct:    50 VSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDL-KSGGFGIVEMLFRCNILALVGGGSN 108

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               YP NKVMIWDDH+S CIGE +FRS+VR+VKL +D I++VLE+KI+VYNF DLKLLHQI
Sbjct:   109 AHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQI 168

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET +NPKGLC +S    + VL CPG+ +G VRVEH+  K T+ I AHDS I+C ALT DG
Sbjct:   169 ETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDG 228

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+S KGTL+RIFNT+DGT LQE
Sbjct:   229 LLLATASMKGTLIRIFNTMDGTRLQE 254

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 140/206 (67%), Positives = 167/206 (81%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             + +NQD  CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    35 VCWNQDSSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 93

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP +KV+IWDDHQSRCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    94 SQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 153

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET ANP+GLC +S    + VL CPGL +G++RVEH+     + I AHDS IAC  LT DG
Sbjct:   154 ETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDG 213

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+STKGTL+RIFNT+DGT LQE
Sbjct:   214 LLLATASTKGTLIRIFNTMDGTRLQE 239

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 120/205 (58%), Positives = 162/205 (79%)

Query:    92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151
             +FNQD+ CFA GT+ GF I++CDPF+E F R F+  GG+G+VEMLFRCNILA+VGGG  P
Sbjct:    17 NFNQDYSCFACGTEKGFLIFSCDPFKERFGRVFD--GGVGIVEMLFRCNILAIVGGGKKP 74

Query:   152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIE 211
             +Y  N+VMIWDD+Q++CI +L F+SEV++VKLRRDRI+VVLE K+++YNF+DL+L+HQ+E
Sbjct:    75 RYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVHQLE 134

Query:   212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271
             T  NPKG+CA+  G  + VL CPGL+ G V VE Y  K+T+ I AH+  ++  AL +DG 
Sbjct:   135 TTNNPKGICAICPGTVN-VLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNKDGT 193

Query:   272 LLATSSTKGTLVRIFNTLDGTLLQE 296
             LLAT+S KGTL+RIF+T  G  ++E
Sbjct:   194 LLATASEKGTLIRIFDTATGEKVKE 218

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q22UW9 TTHERM_00577340 "WD repeat domain phosphoinositide-interacting protein 3" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 109/207 (52%), Positives = 149/207 (71%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             ++SFNQD+GCF+ GT+ GF IYN +PF++I+ R    GGGIG+VEML+RCNI+ALVGGG 
Sbjct:     9 YLSFNQDYGCFSCGTEDGFNIYNTEPFKQIYSRSV--GGGIGIVEMLYRCNIIALVGGGK 66

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQ 209
              P++P  KV +WDD Q + I E++FRSEV++VKL+ DR+IVVLE +I+V+NFADLKL+  
Sbjct:    67 SPKFPPTKVQLWDDSQLKRIAEMNFRSEVKAVKLKADRVIVVLETRIYVHNFADLKLIDT 126

Query:   210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD 269
             I+T  NP GLC+V+     ++L  P  + G+V V  Y+  +T  I AH S + C      
Sbjct:   127 IDTCPNPLGLCSVNTEGDEIILATPHKEVGEVNVHLYSDNKTISIRAHQSALNCLQTNPR 186

Query:   270 GQLLATSSTKGTLVRIFNTLDGTLLQE 296
             G  LAT+S KGT++RI+NT  G LLQE
Sbjct:   187 GTKLATASQKGTIIRIYNTKKGELLQE 213

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 101/206 (49%), Positives = 140/206 (67%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CF A T +GFR+++C PF E  RR F   GGIG+ EMLFR +I  L G   +
Sbjct:    20 VSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTSIFGLAGAESN 79

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              ++P   + +WDD+  R I + +F SE+R+V+L +D  +VVLE+ I VY F DL+L +Q 
Sbjct:    80 TEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRFKDLRLFYQA 139

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
              T++NP GLC +S    + V  CPG  KGQV +EH+  K T+FI AHDS ++C  +  DG
Sbjct:   140 RTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSPLSCMTMALDG 199

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+S +GTL+RIFNT DGT +QE
Sbjct:   200 TLLATASVRGTLIRIFNTRDGTCVQE 225

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 108/209 (51%), Positives = 139/209 (66%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGG 148
             +++NQ    F  GT+HGF +Y+C P   + I R   E   G  V EMLF  N+ A VG G
Sbjct:    36 VAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHE--SGFKVAEMLFLSNLFAFVGNG 93

Query:   149 -PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLL 207
               + +YP NKV +WDD+++ C+ EL+F+SEV +VKL R+ ++VVL+Q I+VY F +LK+ 
Sbjct:    94 YNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNNLKVD 153

Query:   208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT 267
               IET+ NPKGLC V+      VL CPG   GQV+V        KFI AHDS IAC  LT
Sbjct:   154 RVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIACMTLT 213

Query:   268 QDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
              DG LLAT+STKGTL+RIFN +DGTLLQE
Sbjct:   214 LDGSLLATASTKGTLIRIFNAVDGTLLQE 242

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 106/210 (50%), Positives = 140/210 (66%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             +  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGGG 
Sbjct:    15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGGGK 73

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLH 208
              P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   LH
Sbjct:    74 KPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLH 133

Query:   209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFAL 266
               ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C AL
Sbjct:   134 VFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIAL 193

Query:   267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
                G  +AT+S KGTL+RIF+T  G L+QE
Sbjct:   194 NLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5MNZ6	WIPI3_HUMAN	No assigned EC number	0.5094	0.6479	0.6046	yes	no
Q640T2	WIPI3_XENTR	No assigned EC number	0.5094	0.6479	0.6046	yes	no
Q9CR39	WIPI3_MOUSE	No assigned EC number	0.5094	0.6479	0.6046	yes	no
Q5ZL16	WIPI3_CHICK	No assigned EC number	0.5047	0.6479	0.6046	yes	no
Q5R7W0	WIPI3_PONAB	No assigned EC number	0.5094	0.6479	0.6046	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-06

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 14/149 (9%)

Query: 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVY 199
           +     D       + +WD    +C+  L+    EV SV    D   ++    +  I ++
Sbjct: 150 VASSSQD-----GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD 258
           + +  K L  +    +  G+ +V+      +L   G + G +RV    +      +  H 
Sbjct: 205 DLSTGKCLGTLR--GHENGVNSVAFSPDGYLLAS-GSEDGTIRVWDLRTGECVQTLSGHT 261

Query: 259 SRIACFALTQDGQLLATSSTKGTLVRIFN 287
           + +   A + DG+ LA+ S  GT +RI++
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGT-IRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0286	343	consensus G-protein beta subunit [General function	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.93
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.93
PTZ00421	493	coronin; Provisional	99.92
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0266	456	consensus WD40 repeat-containing protein [General	99.92
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG0296	399	consensus Angio-associated migratory cell protein	99.91
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.91
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
PTZ00420	568	coronin; Provisional	99.9
KOG0645	312	consensus WD40 repeat protein [General function pr	99.9
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.9
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.89
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.89
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.89
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.89
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0645	312	consensus WD40 repeat protein [General function pr	99.88
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.88
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.88
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.88
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.88
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.87
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.86
PTZ00421	493	coronin; Provisional	99.85
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.85
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.84
KOG0646	476	consensus WD40 repeat protein [General function pr	99.84
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.83
PTZ00420	568	coronin; Provisional	99.83
KOG0296	399	consensus Angio-associated migratory cell protein	99.83
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.82
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.82
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.8
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.8
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.79
KOG0641	350	consensus WD40 repeat protein [General function pr	99.79
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.79
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.79
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.79
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.79
KOG0643	327	consensus Translation initiation factor 3, subunit	99.78
KOG0289	506	consensus mRNA splicing factor [General function p	99.78
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.77
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.77
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.76
KOG0639	705	consensus Transducin-like enhancer of split protei	99.76
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.76
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.76
KOG0639	705	consensus Transducin-like enhancer of split protei	99.75
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.75
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.74
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.73
KOG1274	933	consensus WD40 repeat protein [General function pr	99.72
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.72
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.72
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.71
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.71
KOG1539	910	consensus WD repeat protein [General function pred	99.7
KOG0267	825	consensus Microtubule severing protein katanin p80	99.69
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.68
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.68
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.68
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.67
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.67
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.66
KOG0646	476	consensus WD40 repeat protein [General function pr	99.66
KOG4328	498	consensus WD40 protein [Function unknown]	99.66
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.66
KOG1274	933	consensus WD40 repeat protein [General function pr	99.64
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.64
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.64
KOG2048	691	consensus WD40 repeat protein [General function pr	99.63
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.63
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.63
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.61
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.61
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.6
KOG2055	514	consensus WD40 repeat protein [General function pr	99.59
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.58
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.58
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.57
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.57
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.57
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.57
PRK11028	330	6-phosphogluconolactonase; Provisional	99.56
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.54
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.53
KOG2096	420	consensus WD40 repeat protein [General function pr	99.53
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.53
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.51
KOG2048	691	consensus WD40 repeat protein [General function pr	99.51
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.51
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.5
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.49
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.49
KOG1963	792	consensus WD40 repeat protein [General function pr	99.49
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.48
COG2319	466	FOG: WD40 repeat [General function prediction only	99.48
PRK01742	429	tolB translocation protein TolB; Provisional	99.46
KOG0649	325	consensus WD40 repeat protein [General function pr	99.45
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.45
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.44
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.44
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.43
PRK11028	330	6-phosphogluconolactonase; Provisional	99.42
KOG1188	376	consensus WD40 repeat protein [General function pr	99.41
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.4
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.4
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.4
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.39
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.38
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.38
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.38
KOG1273	405	consensus WD40 repeat protein [General function pr	99.37
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.37
KOG1188	376	consensus WD40 repeat protein [General function pr	99.37
KOG4227	609	consensus WD40 repeat protein [General function pr	99.37
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.35
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.34
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.32
KOG1310	758	consensus WD40 repeat protein [General function pr	99.32
PRK04922	433	tolB translocation protein TolB; Provisional	99.32
PRK01742	429	tolB translocation protein TolB; Provisional	99.31
PRK03629	429	tolB translocation protein TolB; Provisional	99.31
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.29
PRK03629	429	tolB translocation protein TolB; Provisional	99.29
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.28
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.27
KOG4328	498	consensus WD40 protein [Function unknown]	99.27
PRK05137	435	tolB translocation protein TolB; Provisional	99.26
PRK04922	433	tolB translocation protein TolB; Provisional	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.24
KOG1963	792	consensus WD40 repeat protein [General function pr	99.24
PRK02889	427	tolB translocation protein TolB; Provisional	99.24
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.21
PRK05137	435	tolB translocation protein TolB; Provisional	99.2
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.2
PRK02889	427	tolB translocation protein TolB; Provisional	99.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.14
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.12
KOG0649	325	consensus WD40 repeat protein [General function pr	99.12
KOG4547	541	consensus WD40 repeat-containing protein [General	99.12
KOG2139	445	consensus WD40 repeat protein [General function pr	99.11
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.08
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.07
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.06
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.04
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.04
PRK00178	430	tolB translocation protein TolB; Provisional	99.03
PRK04792	448	tolB translocation protein TolB; Provisional	99.03
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.01
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.01
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.0
KOG2139	445	consensus WD40 repeat protein [General function pr	99.0
KOG2315	566	consensus Predicted translation initiation factor	98.99
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.99
KOG1334	559	consensus WD40 repeat protein [General function pr	98.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.98
PRK00178	430	tolB translocation protein TolB; Provisional	98.97
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.96
PRK04792	448	tolB translocation protein TolB; Provisional	98.95
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.94
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
KOG4547	541	consensus WD40 repeat-containing protein [General	98.9
KOG2321	703	consensus WD40 repeat protein [General function pr	98.89
PRK01029	428	tolB translocation protein TolB; Provisional	98.85
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.83
KOG2314	698	consensus Translation initiation factor 3, subunit	98.82
PRK01029	428	tolB translocation protein TolB; Provisional	98.79
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.76
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.76
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.74
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.73
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.71
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.7
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.69
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.69
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.69
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.61
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.61
COG4946	668	Uncharacterized protein related to the periplasmic	98.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.58
PRK04043	419	tolB translocation protein TolB; Provisional	98.57
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.57
KOG2315	566	consensus Predicted translation initiation factor	98.57
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.55
KOG4227	609	consensus WD40 repeat protein [General function pr	98.54
PRK04043	419	tolB translocation protein TolB; Provisional	98.53
KOG1310	758	consensus WD40 repeat protein [General function pr	98.5
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.49
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.47
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.42
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.35
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.32
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.31
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.29
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.29
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.28
PRK02888	635	nitrous-oxide reductase; Validated	98.25
KOG2695	425	consensus WD40 repeat protein [General function pr	98.24
COG4946	668	Uncharacterized protein related to the periplasmic	98.23
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.11
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.09
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.07
KOG2695	425	consensus WD40 repeat protein [General function pr	98.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.05
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.02
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.01
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.01
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.0
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.96
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.87
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.85
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.83
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.8
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.76
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.66
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.64
KOG2314	698	consensus Translation initiation factor 3, subunit	97.6
KOG1334	559	consensus WD40 repeat protein [General function pr	97.55
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.42
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.41
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.37
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.31
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.27
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.26
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.22
KOG2395	644	consensus Protein involved in vacuole import and d	97.2
PRK02888	635	nitrous-oxide reductase; Validated	97.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.0
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.89
KOG3621	726	consensus WD40 repeat-containing protein [General	96.88
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.83
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.83
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.83
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.66
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.65
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.6
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.58
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.56
COG3391	381	Uncharacterized conserved protein [Function unknow	96.56
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.56
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.44
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.43
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.25
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.23
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.95
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.94
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.91
COG3391	381	Uncharacterized conserved protein [Function unknow	95.9
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.81
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.79
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.64
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.49
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.48
KOG3621	726	consensus WD40 repeat-containing protein [General	95.32
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.09
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.08
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.08
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.02
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	95.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.99
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.79
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.49
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.39
PHA02713	557	hypothetical protein; Provisional	94.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.22
KOG2395	644	consensus Protein involved in vacuole import and d	94.14
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.02
KOG2444	238	consensus WD40 repeat protein [General function pr	93.99
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.71
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.67
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.31
PRK13616	591	lipoprotein LpqB; Provisional	93.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.14
PHA03098	534	kelch-like protein; Provisional	92.72
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.43
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.06
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.63
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.32
PRK13616	591	lipoprotein LpqB; Provisional	91.11
COG5167	776	VID27 Protein involved in vacuole import and degra	90.82
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.72
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.67
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.33
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	89.83
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.74
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.62
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.59
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.54
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	88.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.0
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	87.53
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	87.18
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.01
PF12355	124	Dscam_C: Down syndrome cell adhesion molecule C te	86.98
PHA02790	480	Kelch-like protein; Provisional	86.69
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.46
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	85.35
KOG2444	238	consensus WD40 repeat protein [General function pr	85.24
PHA02713	557	hypothetical protein; Provisional	85.17
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.28
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	83.92
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.43
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.15
COG5276	370	Uncharacterized conserved protein [Function unknow	83.06
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	83.03
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	82.27
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	81.93
PRK10115	686	protease 2; Provisional	81.9
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.03
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	80.7
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.34
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.28

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=3.7e-35  Score=251.14  Aligned_cols=232  Identities=58%  Similarity=0.938  Sum_probs=215.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      ...+++|++|-..|++|.+.|+|||++++.++...+.+ +.+++..+++.+..|++++++|+....|..++|.|||....
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            56679999999999999999999999999988777776 45669999999999999999999888889999999999899


Q ss_pred             cEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcC-CcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEe
Q 020784          167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (321)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~-~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d  245 (321)
                      +++.++.+.++|.+|.+.+++++++..++|++|.+. +.++++.+++..+|.+.|++++..+..+||+.|..-|.|.|.|
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            999999999999999999999999999999999996 7899999999999999999999999999999999999999988


Q ss_pred             eCCcce---EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE---EEeecCceEEEee
Q 020784          246 YASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS---GLWLSSAWLRVLR  319 (321)
Q Consensus       246 ~~~~~~---~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~---~~s~d~~~la~~~  319 (321)
                      +.....   ..+.+|.+.|.|++++-+|.++||+|..||+|||||..+|++++++++|.+.+.+   +||++++||||++
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence            775544   7899999999999999999999999999999999999999999999999987655   8889999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=2.6e-31  Score=231.57  Aligned_cols=226  Identities=35%  Similarity=0.603  Sum_probs=204.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ..+..+.|++|+..|..|+.+|.++|++++....+...   .+.+.+|++.|+..++++++-.     ..+.+++.+.++
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~---~~~~~IvEmLFSSSLvaiV~~~-----qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD---TEGVSIVEMLFSSSLVAIVSIK-----QPRKLKVVHFKK   77 (391)
T ss_pred             cceeeeeeccceeEEEccCCCceeEEecCchHHhhccc---CCCeEEEEeecccceeEEEecC-----CCceEEEEEccc
Confidence            36788889999999999999999999999887755444   5789999999999999999964     458899999999


Q ss_pred             CcEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEecc-CCCCceEEEeeCCCceEEEeecCC-CCcEEE
Q 020784          166 SRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ-KGQVRV  243 (321)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~-~~~~~~~~~s~~~d~~~la~sGs~-dg~V~i  243 (321)
                      +..+.++.+..+|.+|.+++++++++....|.|||++++++++++... .++.++|+++++.++.++|+.|+. .|.|.+
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            999999999999999999999999999999999999999999999886 788899999999999999998765 578999


Q ss_pred             EeeCC-cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE---EEeecCceEEEee
Q 020784          244 EHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS---GLWLSSAWLRVLR  319 (321)
Q Consensus       244 ~d~~~-~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~---~~s~d~~~la~~~  319 (321)
                      ||..+ ++..++.+|++.+-+++|+++|.+|||+|+.||+||||.+.+|+.+++|++|...+.+   +|++|++||++.+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS  237 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS  237 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence            99765 5577899999999999999999999999999999999999999999999999886554   7788999998864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=234.50  Aligned_cols=232  Identities=16%  Similarity=0.155  Sum_probs=188.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCC----------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD----------  150 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~----------  150 (321)
                      .+|.+.|.|++|+|+|..||+|+.| ++|+||+++....+.... |.+.|.+++|+|++..+|..+-...          
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            5788999999999999999999875 599999998877666665 7889999999999988775442210          


Q ss_pred             -------------------------------CCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE-E-CCEE
Q 020784          151 -------------------------------PQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVV-L-EQKI  196 (321)
Q Consensus       151 -------------------------------~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~-~-~~~I  196 (321)
                                                     ..+-||+|+|||+..+.++..+..+. +|++++|..+.++.. + |++|
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI  270 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI  270 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence                                           02237899999999888888887665 899999997665544 3 4699


Q ss_pred             EEEEcCCcEEEEEEeccCCCCc----------------------------------------------------------
Q 020784          197 FVYNFADLKLLHQIETIANPKG----------------------------------------------------------  218 (321)
Q Consensus       197 ~iwd~~~~~~~~~l~~~~~~~~----------------------------------------------------------  218 (321)
                      ++|+...|++.+++++|.+.+.                                                          
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl  350 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL  350 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence            9999988888887777765543                                                          


Q ss_pred             -------------------eEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeC
Q 020784          219 -------------------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       219 -------------------~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~  278 (321)
                                         +..+++.||+.++| |++.|+.|++|+..+++ +.+|++|-..|+.|+|+.|.++|++||.
T Consensus       351 W~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA-SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~Sk  429 (480)
T KOG0271|consen  351 WNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA-SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSK  429 (480)
T ss_pred             ecccccccchhhhhchhhheeeEEECCCccEEE-EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCC
Confidence                               33445556779998 69999999999998877 5699999999999999999999999999


Q ss_pred             CCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEeecCceEEE
Q 020784          279 KGTLVRIFNTLDGTLLQEECCPSIS--AQSGLWLSSAWLRV  317 (321)
Q Consensus       279 Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s~d~~~la~  317 (321)
                      |.| +||||+++.++...+. ||..  ..+-.++||+.++-
T Consensus       430 DsT-LKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~s  468 (480)
T KOG0271|consen  430 DST-LKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVAS  468 (480)
T ss_pred             Cce-EEEEEeeeeeecccCC-CCCceEEEEEecCCCceeec
Confidence            999 9999999999998884 5554  44466788887653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-32  Score=241.41  Aligned_cols=238  Identities=13%  Similarity=0.038  Sum_probs=203.1

Q ss_pred             CCCCCCCCCCcccCCCCCCeEEEEEcCC--CCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEE
Q 020784           69 YQMPLPSPAESTSSSPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV  145 (321)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~d--g~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~  145 (321)
                      .++.+......+.++|...|.++.|+|.  +..||+|+.|| +++|++++...+...+. |...|..|++++++..++++
T Consensus       201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG~~L~Ta  279 (459)
T KOG0272|consen  201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSGKFLGTA  279 (459)
T ss_pred             EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCCceeeec
Confidence            4555555556667899999999999997  66899998866 88999988766656665 67889999999999999988


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCeEEEEEC---CEEEEEEcCCcEEEEEEeccCCCCceEE
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCA  221 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~---~~I~iwd~~~~~~~~~l~~~~~~~~~~~  221 (321)
                      +       .|.+-++||++++..+.....+ ..|.++.|++++-+++++   ..-||||+++++++-.|.+|..++..++
T Consensus       280 s-------fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~  352 (459)
T KOG0272|consen  280 S-------FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVA  352 (459)
T ss_pred             c-------cccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEe
Confidence            8       7899999999998866555554 489999999998777764   4889999999999999999988877777


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      |+|++  ..|| +|+.|++++|||+.... +.++.+|.+-|+.|+|+| .|.+|+|+|.|++ ++||...++.+++++ .
T Consensus       353 fsPNG--y~lA-Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksL-a  427 (459)
T KOG0272|consen  353 FSPNG--YHLA-TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSL-A  427 (459)
T ss_pred             ECCCc--eEEe-ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhh-c
Confidence            76654  7788 69999999999998755 779999999999999998 6899999999999 999999999999999 7


Q ss_pred             CCcceeE--EEeecCceEEEee
Q 020784          300 PSISAQS--GLWLSSAWLRVLR  319 (321)
Q Consensus       300 g~~~~~~--~~s~d~~~la~~~  319 (321)
                      ||+..++  .++.||++++.+.
T Consensus       428 GHe~kV~s~Dis~d~~~i~t~s  449 (459)
T KOG0272|consen  428 GHEGKVISLDISPDSQAIATSS  449 (459)
T ss_pred             CCccceEEEEeccCCceEEEec
Confidence            8887766  5689999998753

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.4e-30  Score=230.10  Aligned_cols=224  Identities=16%  Similarity=0.112  Sum_probs=188.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCC--CeEEEEeCCCCCCCCCCcEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~sg~~~~~~~d~~v~  159 (321)
                      +...+|..|.|+.|++.||||+-.| ++||+..+...+..... |...+..+.|+|..  ..+++++       .||+|+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s-------~Dgtvk  244 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATAS-------ADGTVK  244 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeec-------cCCcee
Confidence            4456999999999999999999876 67999988876655554 78899999999874  3556665       789999


Q ss_pred             EEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +|++.+...+.++.++. .|..|.|||++-.+++   |.+=|+||+++++.+.-..+|...+..++|.++  |.+++ +|
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D--GSL~~-tG  321 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD--GSLAA-TG  321 (459)
T ss_pred             eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCC--Cceee-cc
Confidence            99999988888888765 7999999998655543   579999999999888888999888777777665  47777 69


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEee-c
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWL-S  311 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~-d  311 (321)
                      +.|..-+|||+.++. ++.|.+|..+|.+|+|+|+|..|||||.|++ +||||++..++++++. +|...  .+.|++ .
T Consensus       322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIP-AHSNLVSQVKYSPQE  399 (459)
T ss_pred             CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceecc-cccchhhheEecccC
Confidence            999999999999865 8899999999999999999999999999999 9999999999999884 56544  457886 6


Q ss_pred             CceEEEee
Q 020784          312 SAWLRVLR  319 (321)
Q Consensus       312 ~~~la~~~  319 (321)
                      |+||+.|+
T Consensus       400 g~fL~Tas  407 (459)
T KOG0272|consen  400 GYFLVTAS  407 (459)
T ss_pred             CeEEEEcc
Confidence            78898875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=2.9e-28  Score=217.96  Aligned_cols=222  Identities=17%  Similarity=0.198  Sum_probs=184.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      ....|++++|+.+|.+||+|+.+| +|||+..-. ....+.+ |.++|..+.|...+++++.++       .|+++.+||
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~-HkgPI~slKWnk~G~yilS~~-------vD~ttilwd  304 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQ-HKGPIFSLKWNKKGTYILSGG-------VDGTTILWD  304 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhc-cCCceEEEEEcCCCCEEEecc-------CCccEEEEe
Confidence            335899999999999999999988 679997543 3333444 799999999999999998877       789999999


Q ss_pred             CCCCcEEEEEeeCCce-eEEEEeCCe-EEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          163 DHQSRCIGELSFRSEV-RSVKLRRDR-IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~v-~~v~~~~~~-~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      ..++.....+.+++.+ ..|.|-.+. ++.+ +++.|+++.+.....+.++.+|.+++..+.+.+  .+.+|+ +++.|+
T Consensus       305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~--tg~LLa-S~SdD~  381 (524)
T KOG0273|consen  305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP--TGSLLA-SCSDDG  381 (524)
T ss_pred             ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC--CCceEE-EecCCC
Confidence            9999999999999877 778987654 4444 467999999998899999999888766655544  457777 588888


Q ss_pred             cEEEEeeC---------------------------------------------------C-cceEEeeccccceeEEEEC
Q 020784          240 QVRVEHYA---------------------------------------------------S-KRTKFIMAHDSRIACFALT  267 (321)
Q Consensus       240 ~V~i~d~~---------------------------------------------------~-~~~~~l~~H~~~V~~vafs  267 (321)
                      +++||...                                                   . .++.+|..|..+|.+|+||
T Consensus       382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS  461 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS  461 (524)
T ss_pred             eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec
Confidence            88888732                                                   1 1456788999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       268 pdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      |+|+|+|+|+.||. |.||++++|++++++........++++.+|.+|+++
T Consensus       462 ~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~  511 (524)
T KOG0273|consen  462 PNGRYLASGSLDGC-VHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGAC  511 (524)
T ss_pred             CCCcEEEecCCCCe-eEeccccchheeEeecCCCeEEEEEEcCCCCEEEEE
Confidence            99999999999999 999999999999999655556778999999998875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.9e-28  Score=226.37  Aligned_cols=225  Identities=16%  Similarity=0.236  Sum_probs=190.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC--cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~--gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ...+|..++|+..|.+||.|+.+  .+.||++++...++.... |-..+.+++.++++..+++++       .||+||||
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq~iaTG~-------eDgKVKvW  377 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQLIATGA-------EDGKVKVW  377 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCcEEEecc-------CCCcEEEE
Confidence            34589999999999999999885  578999998877766664 677899999999999888877       78999999


Q ss_pred             eCCCCcEEEEEeeC-CceeEEEEeCCe---EEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          162 DDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~~---~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      |...+-|..+|..+ +.|+.++|+...   +..+.|++||.||+...+..++|... .++...+++.++.|.++++ |+.
T Consensus       378 n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~A-G~~  455 (893)
T KOG0291|consen  378 NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCA-GAQ  455 (893)
T ss_pred             eccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEe-ecc
Confidence            99999999998765 579999998654   23345899999999999999999875 4556667777877787774 887


Q ss_pred             CC-cEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEeCCCcceeEEEeecCce
Q 020784          238 KG-QVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEECCPSISAQSGLWLSSAW  314 (321)
Q Consensus       238 dg-~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg-~~i~~~~~g~~~~~~~~s~d~~~  314 (321)
                      |. .|.+|+++++++. .+.||.++|.+++|+|+|..|||+|+|+| |||||+-.. ..+.++...++...++|.|||+-
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~e  534 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKE  534 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEeeccceeEEEEcCCCCe
Confidence            76 5778999998865 89999999999999999999999999999 999998654 45678888888888899999999


Q ss_pred             EEEee
Q 020784          315 LRVLR  319 (321)
Q Consensus       315 la~~~  319 (321)
                      ||||+
T Consensus       535 laVaT  539 (893)
T KOG0291|consen  535 LAVAT  539 (893)
T ss_pred             EEEEE
Confidence            99986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=5.2e-28  Score=201.13  Aligned_cols=224  Identities=18%  Similarity=0.194  Sum_probs=179.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCce--eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ..+.|+.+.++||++.||+|+...||+||+.+.+.  +..++. |.+.|..|.+..+++.+.+.+       .||++|||
T Consensus        39 ~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~-h~kNVtaVgF~~dgrWMyTgs-------eDgt~kIW  110 (311)
T KOG0315|consen   39 PDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG-HTKNVTAVGFQCDGRWMYTGS-------EDGTVKIW  110 (311)
T ss_pred             CccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec-cCCceEEEEEeecCeEEEecC-------CCceEEEE
Confidence            33589999999999999999999999999987764  334443 567888888888898888777       78999999


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      |++...+.+.+++..+|.++..|++.  ++++. ++.|++||+....+.+.+... ....+.++...+|+..++. +...
T Consensus       111 dlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgsml~a-~nnk  188 (311)
T KOG0315|consen  111 DLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGSMLAA-ANNK  188 (311)
T ss_pred             eccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCcEEEE-ecCC
Confidence            99998888999999999999999864  55554 469999999877665555332 2244556666777788884 8889


Q ss_pred             CcEEEEeeCCc-------ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEeCCCcc--eeEEE
Q 020784          239 GQVRVEHYASK-------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEECCPSIS--AQSGL  308 (321)
Q Consensus       239 g~V~i~d~~~~-------~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg-~~i~~~~~g~~~--~~~~~  308 (321)
                      |..++|++...       ++..+++|.+.+..+.||||+++|||+|.|.+ ++||++++. ++-..+ .|+..  =.-.|
T Consensus       189 G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l-~gh~rWvWdc~F  266 (311)
T KOG0315|consen  189 GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVL-TGHQRWVWDCAF  266 (311)
T ss_pred             ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEe-ecCCceEEeeee
Confidence            99999997643       34478999999999999999999999999999 999999998 444445 45543  23488


Q ss_pred             eecCceEEEee
Q 020784          309 WLSSAWLRVLR  319 (321)
Q Consensus       309 s~d~~~la~~~  319 (321)
                      |.||+||..++
T Consensus       267 S~dg~YlvTas  277 (311)
T KOG0315|consen  267 SADGEYLVTAS  277 (311)
T ss_pred             ccCccEEEecC
Confidence            99999998764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-27  Score=201.06  Aligned_cols=229  Identities=13%  Similarity=0.111  Sum_probs=183.8

Q ss_pred             ccCCCCCCeEEEEEcCCC-CEEEEEcCC-cEEEEEecCCc-----eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQDH-GCFAAGTDH-GFRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg-~~lasg~~~-gv~vw~~~~~~-----~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      ....|++.|+.++..+.+ +.|.+++.| .+.+|++....     ....... |.+-|..+.++++++....++      
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~s------   82 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSAS------   82 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEecc------
Confidence            346788999999999875 567777764 57799885433     2333333 788899999999999887777      


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE--E-CCEEEEEEcCCcEEEEEEecc--CCCCceEEEeeCC
Q 020784          153 YPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGV  226 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~--~-~~~I~iwd~~~~~~~~~l~~~--~~~~~~~~~s~~~  226 (321)
                       .|+++|+||+.+++..+.|..|. .|.+++|+++.--++  + |++|++||+-.. +..++..+  ..++.++.|+|+.
T Consensus        83 -wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   83 -WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             -ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCC
Confidence             68999999999999888887665 799999998643333  2 579999999754 44455443  6778889999988


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ  305 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~  305 (321)
                      ++.+|+ +++.|++|++||+.+-++ .++.+|++.|+.+++||||.++|+|+.||. +.+||++.+++++++........
T Consensus       161 ~~p~Iv-s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~a~~~v~s  238 (315)
T KOG0279|consen  161 SNPIIV-SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLEAFDIVNS  238 (315)
T ss_pred             CCcEEE-EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEeccCCCeEee
Confidence            788888 799999999999988664 589999999999999999999999999999 99999999999998865555555


Q ss_pred             EEEeecCceEEEee
Q 020784          306 SGLWLSSAWLRVLR  319 (321)
Q Consensus       306 ~~~s~d~~~la~~~  319 (321)
                      ++|++.--||+.|.
T Consensus       239 l~fspnrywL~~at  252 (315)
T KOG0279|consen  239 LCFSPNRYWLCAAT  252 (315)
T ss_pred             EEecCCceeEeecc
Confidence            57777778887764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=2.8e-27  Score=200.73  Aligned_cols=228  Identities=14%  Similarity=0.119  Sum_probs=186.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .+.++|.++|+++.|++|+++|++++.|| +.|||.-+...+....+ ....|..++++|+++.+|..+       -|+.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGG-------LdN~  120 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGG-------LDNK  120 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecC-------cCce
Confidence            34578999999999999999999999988 66999988777766666 356788889999999888776       6799


Q ss_pred             EEEEeCCCC------cEEEEEeeCC-ceeEEEEeCCeEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCc
Q 020784          158 VMIWDDHQS------RCIGELSFRS-EVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       158 v~iWD~~~~------~~~~~~~~~~-~v~~v~~~~~~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                      ..||++.+.      ...+++..+. .+.++.|-.+..++.  +|.+..+||+++++.++.|.+|...+..+++++. ++
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~-~~  199 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS-DG  199 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-CC
Confidence            999998755      2334455444 566777876654444  3459999999999999999999888777777774 55


Q ss_pred             eEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce---
Q 020784          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA---  304 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~---  304 (321)
                      +.++ +|+.|+..++||++.+. ..+|.+|.+.|++|+|.|+|.-|||||+|++ .|+||++..+.+..|......+   
T Consensus       200 ntFv-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  200 NTFV-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGIT  277 (343)
T ss_pred             CeEE-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCce
Confidence            7777 69999999999998765 6699999999999999999999999999999 9999999999999886444333   


Q ss_pred             eEEEeecCceEEE
Q 020784          305 QSGLWLSSAWLRV  317 (321)
Q Consensus       305 ~~~~s~d~~~la~  317 (321)
                      .+.||-+|++|-.
T Consensus       278 Sv~FS~SGRlLfa  290 (343)
T KOG0286|consen  278 SVAFSKSGRLLFA  290 (343)
T ss_pred             eEEEcccccEEEe
Confidence            3488899998754

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1.3e-28  Score=232.03  Aligned_cols=198  Identities=15%  Similarity=0.225  Sum_probs=175.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|.++|+.++|+||.++|+++++| +||+|.+++......... |..+|..|.++|.+=++|+++       .|++.+
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~GyYFatas-------~D~tAr  518 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGYYFATAS-------HDQTAR  518 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCceEEEecC-------CCceee
Confidence            36899999999999999999999985 599999999988777765 788999999988887777776       679999


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +|.....+..+.+..+ ..|.++.|||+.-++++   |.+||+||+.+|..++.|.+|..++.++++++  +|.+|| +|
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp--~Gr~La-Sg  595 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP--CGRYLA-SG  595 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC--CCceEe-ec
Confidence            9999888877777655 58999999999877764   46999999999999999999999988888888  459999 69


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +.||.|.|||+.++. ++.+++|++.|.+|.||.||..||+||.|.+ |++||+..
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns-V~lWD~~~  650 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS-VRLWDLTK  650 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe-EEEEEchh
Confidence            999999999999865 6799999999999999999999999999999 99999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=3.6e-28  Score=229.13  Aligned_cols=231  Identities=13%  Similarity=0.150  Sum_probs=190.8

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc-----------e------------------eEEe-ee
Q 020784           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-----------E------------------IFRR-DF  124 (321)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~-----------~------------------~~~~-~~  124 (321)
                      ..|++... ...|+|+.|++|+++||+|-.+. |++|.+.+.+           .                  ...+ -.
T Consensus       370 c~YT~~nt-~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  370 CMYTFHNT-YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEEEEEc-CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            33444333 35799999999999999998755 8899876321           0                  0011 12


Q ss_pred             ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE---CCEEEEEE
Q 020784          125 ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYN  200 (321)
Q Consensus       125 ~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~---~~~I~iwd  200 (321)
                      .|.++|..+.++++.+.++.++       .|.+||+|.+.+..++...+.+. +|..+.|.|.+...++   |++-++|.
T Consensus       449 GH~GPVyg~sFsPd~rfLlScS-------ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCS-------EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             cCCCceeeeeecccccceeecc-------CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            2889999999999999998888       78999999999999888887664 8999999987654443   46999999


Q ss_pred             cCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCC
Q 020784          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTK  279 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~D  279 (321)
                      ....+.++.|.+|...+.++.|+|+.  .++| +|+.|.+|++||..++. +..|.||+++|.+|+|||+|++||||++|
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FHPNs--~Y~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFHPNS--NYVA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             cccCCchhhhcccccccceEEECCcc--cccc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence            99999999999999999888887754  8998 59999999999998876 66899999999999999999999999999


Q ss_pred             CcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          280 GTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       280 gt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      |. |+|||+.+|+++.++. +|...+  +.|+.||..||++.
T Consensus       599 ~~-I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  599 GL-IKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             Cc-EEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecC
Confidence            99 9999999999999984 565433  48899999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=6.8e-27  Score=194.46  Aligned_cols=214  Identities=15%  Similarity=0.243  Sum_probs=173.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+|...|+.|.|..||+++++|++|| ++|||+......  +.++|..+|..+..+++...++++.       .+|.|+|
T Consensus        80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q--R~~~~~spVn~vvlhpnQteLis~d-------qsg~irv  150 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ--RNYQHNSPVNTVVLHPNQTELISGD-------QSGNIRV  150 (311)
T ss_pred             eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc--hhccCCCCcceEEecCCcceEEeec-------CCCcEEE
Confidence            46777999999999999999999977 779999886553  4444578999999988888787766       6799999


Q ss_pred             EeCCCCcEEEEEee--CCceeEEEEeCCe--EEEEEC-CEEEEEEcCC------cEEEEEEeccCCCCceEEEeeCCCce
Q 020784          161 WDDHQSRCIGELSF--RSEVRSVKLRRDR--IIVVLE-QKIFVYNFAD------LKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       161 WD~~~~~~~~~~~~--~~~v~~v~~~~~~--~~~~~~-~~I~iwd~~~------~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      ||+.+..+..++.-  ...|.++.++++.  ++.+.. +...+|++.+      .+.+.+|+.|...+..|.++++  +.
T Consensus       151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k  228 (311)
T KOG0315|consen  151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VK  228 (311)
T ss_pred             EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--Cc
Confidence            99998877666533  2468888887764  444443 6999999853      4566778888777777888775  58


Q ss_pred             EEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEE
Q 020784          230 VLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSG  307 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~  307 (321)
                      +||. ++.|.+|+||+..+.  ...++.+|.+.|..++||.||+||+|||.|++ +|+|+++.|+.++.+ .||.+..++
T Consensus       229 ~lat-~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~-~rlW~~~~~k~v~qy-~gh~K~~vc  305 (311)
T KOG0315|consen  229 YLAT-CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT-ARLWDLSAGKEVRQY-QGHHKAAVC  305 (311)
T ss_pred             EEEe-ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc-eeecccccCceeeec-CCcccccEE
Confidence            9995 899999999998765  34589999999999999999999999999999 999999999999988 577777665


Q ss_pred             Ee
Q 020784          308 LW  309 (321)
Q Consensus       308 ~s  309 (321)
                      ..
T Consensus       306 ~~  307 (311)
T KOG0315|consen  306 VA  307 (311)
T ss_pred             EE
Confidence            54

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-27  Score=205.83  Aligned_cols=221  Identities=15%  Similarity=0.226  Sum_probs=185.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ++|.+.|..|+|+..|++||+++.|. +.+||.++.-.......+|++.|..+.+.+-++.++.++       .|++|+.
T Consensus       147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s-------rD~tik~  219 (406)
T KOG0295|consen  147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS-------RDNTIKA  219 (406)
T ss_pred             hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc-------cccceeE
Confidence            67888999999999999999999877 889999874222222223788999999999999998888       7899999


Q ss_pred             EeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC----------
Q 020784          161 WDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV----------  226 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~----------  226 (321)
                      ||+.++-++.++..+. -|..+..+.++.++++   +.++++|-+.++++...+..|..++.++++.+..          
T Consensus       220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence            9999999999998776 4888899998876664   3599999999998888888888888777765531          


Q ss_pred             ---CceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          227 ---GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       227 ---d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                         .+.+++ +|+-|++|++||+.++. +.+|.+|.+.|+.++|+|.|+||+|+.+|++ +||||+++++|.+++. .+.
T Consensus       300 ~~~~~~~l~-s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~-ah~  376 (406)
T KOG0295|consen  300 STNGGQVLG-SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLE-AHE  376 (406)
T ss_pred             CCCCccEEE-eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccC-CCc
Confidence               124666 69999999999999865 7899999999999999999999999999999 9999999999999986 666


Q ss_pred             ceeEEEeecC
Q 020784          303 SAQSGLWLSS  312 (321)
Q Consensus       303 ~~~~~~s~d~  312 (321)
                      -...++.+.-
T Consensus       377 hfvt~lDfh~  386 (406)
T KOG0295|consen  377 HFVTSLDFHK  386 (406)
T ss_pred             ceeEEEecCC
Confidence            6666655544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.95  E-value=4.9e-26  Score=192.07  Aligned_cols=205  Identities=10%  Similarity=0.102  Sum_probs=165.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|...|..+..++||++..+|+-|+ +|+||+.+++....... |...|..++++.+...+++.+       .|++|+
T Consensus        59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGS-------rDkTik  130 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGS-------RDKTIK  130 (315)
T ss_pred             eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCC-------Ccceee
Confidence            456777999999999999999998755 88999999866555544 778888888888777665544       789999


Q ss_pred             EEeCCCCcEEEEEee--CCceeEEEEeCC--eEEE--E-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          160 IWDDHQSRCIGELSF--RSEVRSVKLRRD--RIIV--V-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       160 iWD~~~~~~~~~~~~--~~~v~~v~~~~~--~~~~--~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      +||....+.......  ..-|.+++|+|+  ..++  + .|++||+||+++.++.+.+.+|...+..+.+++++  .+.+
T Consensus       131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG--slca  208 (315)
T KOG0279|consen  131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG--SLCA  208 (315)
T ss_pred             eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC--CEEe
Confidence            999876655443333  345999999987  2333  3 35799999999999999999998888888888865  7777


Q ss_pred             eecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                       +|+.||.+.+||++.+.-.....|...|++++|+|+...|+.+ .+-. |||||+.++.++.+++
T Consensus       209 -sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~s-IkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  209 -SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATS-IKIWDLESKAVVEELK  271 (315)
T ss_pred             -cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCc-eEEEeccchhhhhhcc
Confidence             6999999999999987766666899999999999998777655 4666 9999999999988775

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.3e-26  Score=211.95  Aligned_cols=210  Identities=14%  Similarity=0.171  Sum_probs=184.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      -..-+|+++.|-.--+++++|+||. ||||+..+++.+...+. |..-|++++.+|...++.+++       +|-+||+|
T Consensus        53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P~vLtsS-------DDm~iKlW  124 (794)
T KOG0276|consen   53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLPYVLTSS-------DDMTIKLW  124 (794)
T ss_pred             ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCCeEEecC-------CccEEEEe
Confidence            3445899999999999999999976 89999999999888776 788899999999988888877       78999999


Q ss_pred             eCCCC-cEEEEEeeCC-ceeEEEEeCC---eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          162 DDHQS-RCIGELSFRS-EVRSVKLRRD---RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       162 D~~~~-~~~~~~~~~~-~v~~v~~~~~---~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      |.+++ .+.++++.|. .|++++|+|+   .++.+ .|++|++|.+.......++++|...+.++++-+.+|..+|+ +|
T Consensus       125 ~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI-sg  203 (794)
T KOG0276|consen  125 DWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI-SG  203 (794)
T ss_pred             eccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE-ec
Confidence            99865 4677787776 6999999985   45554 58899999999999999999999999999999999999998 69


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      +.|.+|+|||++++. +.+|.||...|..++|+|.-.+++|||+||| ||||+..|.++..++..|..
T Consensus       204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~gle  270 (794)
T KOG0276|consen  204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNYGLE  270 (794)
T ss_pred             CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhcCCc
Confidence            999999999999976 7799999999999999999999999999999 99999999887776655443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6e-26  Score=215.98  Aligned_cols=225  Identities=14%  Similarity=0.182  Sum_probs=182.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|.++|+.|+|+|++.+|++|+||- |+||+.++.+++++... |-.-|+.+.+++.-..++.++       +|.|||
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSAS-------DDQTIr  118 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSAS-------DDQTIR  118 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCceEEEcc-------CCCeEE
Confidence            457889999999999999999999965 88999999999888775 677788888888888888777       789999


Q ss_pred             EEeCCCCcEEEEEeeCC-ceeEEEEeCC-eE-EEE-ECCEEEEEEcCCc---------------------------E--E
Q 020784          160 IWDDHQSRCIGELSFRS-EVRSVKLRRD-RI-IVV-LEQKIFVYNFADL---------------------------K--L  206 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~-~~-~~~-~~~~I~iwd~~~~---------------------------~--~  206 (321)
                      ||+.++++++..+..|. .|+|..||+. .+ +.+ .|.+||+||+...                           .  .
T Consensus       119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence            99999999999998776 6999999983 33 333 4689999998521                           1  1


Q ss_pred             EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc---eEEeeccccceeEEEECCCCCEEEEEeCCCcEE
Q 020784          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (321)
Q Consensus       207 ~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~---~~~l~~H~~~V~~vafspdg~~las~S~Dgt~I  283 (321)
                      .+.+++|...+.-++|++.  -.+++ ||+.|..|++|.++...   +-+.++|.+.|.|+-|+|...++.|.|+|++ |
T Consensus       199 K~VLEGHDRGVNwaAfhpT--lpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-i  274 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPT--LPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-I  274 (1202)
T ss_pred             eeeecccccccceEEecCC--cceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-E
Confidence            2344666666666666654  36776 79999999999987654   3378999999999999999999999999999 9


Q ss_pred             EEEEcCCCcEEEEEeCCCcce-eEEEeecCceEEE
Q 020784          284 RIFNTLDGTLLQEECCPSISA-QSGLWLSSAWLRV  317 (321)
Q Consensus       284 rIWd~~tg~~i~~~~~g~~~~-~~~~s~d~~~la~  317 (321)
                      ||||+...+.+++|++.++.. .++.-+....+|+
T Consensus       275 rVwDm~kRt~v~tfrrendRFW~laahP~lNLfAA  309 (1202)
T KOG0292|consen  275 RVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAA  309 (1202)
T ss_pred             EEEecccccceeeeeccCCeEEEEEecCCcceeee
Confidence            999999999999999888765 3355566666655

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.5e-26  Score=192.58  Aligned_cols=200  Identities=19%  Similarity=0.278  Sum_probs=161.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEE-eeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFR-RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|..-|..|+|++|..+|++|+. +-+||||++..+-.-. ... |.+.|..+.|+...+.+...+       .|++||
T Consensus        97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir~v~wc~eD~~iLSSa-------dd~tVR  168 (334)
T KOG0278|consen   97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIRTVLWCHEDKCILSSA-------DDKTVR  168 (334)
T ss_pred             hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcceeEEEeccCceEEeec-------cCCceE
Confidence            446669999999999999999998 5578999976542211 111 678899999988777666654       689999


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +||.+++..++.+.+..+|.++.++++.  +.++-.+.|++||..+..+++.++...   .+.+.+..|+..++++ |+.
T Consensus       169 LWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~---nV~SASL~P~k~~fVa-Gge  244 (334)
T KOG0278|consen  169 LWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC---NVESASLHPKKEFFVA-GGE  244 (334)
T ss_pred             EEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc---ccccccccCCCceEEe-cCc
Confidence            9999999999999999999999998765  444456799999999999888877643   3444455555567764 999


Q ss_pred             CCcEEEEeeCCcceE-Ee-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 020784          238 KGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       238 dg~V~i~d~~~~~~~-~l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i  294 (321)
                      |+.++.+|+.++... .+ ++|-++|.||.|+|+|..-|+||+||+ ||||.+..++..
T Consensus       245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~~  302 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCch
Confidence            999999999887644 44 899999999999999999999999999 999999877643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5e-25  Score=206.82  Aligned_cols=224  Identities=16%  Similarity=0.201  Sum_probs=180.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+|-..|+|++++|||+++|+|++|+ |+|||...+-+..+..- |...+..+.+...++.+.+++       -||+||.
T Consensus       347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssS-------LDGtVRA  418 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSS-------LDGTVRA  418 (893)
T ss_pred             cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEee-------cCCeEEe
Confidence            56778999999999999999999976 99999999877766654 788999999999999888887       7899999


Q ss_pred             EeCCCCcEEEEEeeCCce--eEEEEeCCeEEEE--ECC--EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          161 WDDHQSRCIGELSFRSEV--RSVKLRRDRIIVV--LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~--~~~--~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      ||+...++.++++.+.++  .+++..+...+++  ..+  .|++|++++|+++-.+.+|..|+..++|++.+  ..|| |
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~--~~La-S  495 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG--SLLA-S  495 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc--CeEE-e
Confidence            999999999999887754  4555665443333  223  89999999999999999999998887887765  6787 7


Q ss_pred             cCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe---------------
Q 020784          235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC---------------  298 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~---------------  298 (321)
                      |+-|++|++|+.-.. ....--.+...|..++|+|||+-||.+.-||. |.+||...+....+.+               
T Consensus       496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~  574 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETDRI  574 (893)
T ss_pred             ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhcccccccccee
Confidence            999999999997543 23333457788999999999999999999999 9999998776553221               


Q ss_pred             -CC-----CcceeEEEeecCceEEE
Q 020784          299 -CP-----SISAQSGLWLSSAWLRV  317 (321)
Q Consensus       299 -~g-----~~~~~~~~s~d~~~la~  317 (321)
                       ..     ..-..+++|+||.+|..
T Consensus       575 ta~~sa~~K~Ftti~ySaDG~~IlA  599 (893)
T KOG0291|consen  575 TAENSAKGKTFTTICYSADGKCILA  599 (893)
T ss_pred             ehhhcccCCceEEEEEcCCCCEEEe
Confidence             11     11134588999988754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=5.7e-25  Score=209.09  Aligned_cols=223  Identities=15%  Similarity=0.201  Sum_probs=178.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCc--eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..+...|.|+.|++||++|++++. +.+++|+....+  ...... .|...|..++|++++..++.++       .|++|
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s-------~D~ti  227 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGS-------DDKTL  227 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEec-------CCceE
Confidence            334678999999999999998876 558899996666  333332 2677899999999999777776       78999


Q ss_pred             EEEeC-CCCcEEEEEeeCC-ceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          159 MIWDD-HQSRCIGELSFRS-EVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       159 ~iWD~-~~~~~~~~~~~~~-~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      ||||+ ..+.++..+..+. .|++++|+++.  ++.+. |++|||||+++++++.++.+|...+..++|+.  ++.+++ 
T Consensus       228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~--d~~~l~-  304 (456)
T KOG0266|consen  228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP--DGNLLV-  304 (456)
T ss_pred             EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC--CCCEEE-
Confidence            99999 5567888887554 79999999875  33333 46999999999999999999988777777665  458888 


Q ss_pred             ecCCCCcEEEEeeCCcc---eEEeeccccc--eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc---ee
Q 020784          234 PGLQKGQVRVEHYASKR---TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS---AQ  305 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~---~~~l~~H~~~--V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~---~~  305 (321)
                      +++.||.|+|||..++.   ...+.++...  +++++|+|+|.+|++++.|++ +++||+.+++++.++. ++..   +.
T Consensus       305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~-~~~~~~~~~  382 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYT-GHSNLVRCI  382 (456)
T ss_pred             EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeec-ccCCcceeE
Confidence            47999999999998877   4577787766  999999999999999999999 9999999999999884 4443   22


Q ss_pred             E--EEeecCceEEE
Q 020784          306 S--GLWLSSAWLRV  317 (321)
Q Consensus       306 ~--~~s~d~~~la~  317 (321)
                      .  .++..++|+..
T Consensus       383 ~~~~~~~~~~~i~s  396 (456)
T KOG0266|consen  383 FSPTLSTGGKLIYS  396 (456)
T ss_pred             ecccccCCCCeEEE
Confidence            2  33466777755

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=3e-25  Score=185.78  Aligned_cols=227  Identities=15%  Similarity=0.164  Sum_probs=176.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEEEEEec-CCCeEEEEeCCCCCCCCCCc
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .++|..+|.+|+|+.||+.||+|+- +.++||+++..+.......+ |.+.+..++|.+ +++.+++++       .|++
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-------~dk~   88 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-------GDKT   88 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-------CCce
Confidence            4567789999999999999999997 55889999887655444432 455666666654 677888888       4589


Q ss_pred             EEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      |++||.+.++++..+.....-..+.|+++.  ++++. ++.|.+.|.++.+.+...+... .+.-++++ ..++.+++. 
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-e~ne~~w~-~~nd~Fflt-  165 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-EVNEISWN-NSNDLFFLT-  165 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-eeeeeeec-CCCCEEEEe-
Confidence            999999999999988887776677888754  33332 4699999999888776654322 12234444 333455553 


Q ss_pred             cCCCCcEEEEeeC-CcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee-EEEeecC
Q 020784          235 GLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ-SGLWLSS  312 (321)
Q Consensus       235 Gs~dg~V~i~d~~-~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~-~~~s~d~  312 (321)
                       +..|.|.|..+- .+++..+++|...+.||.|+|+|+|||+||.|.. +-+||+...-|++.+.+-.-..+ ++||.||
T Consensus       166 -~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRldwpVRTlSFS~dg  243 (313)
T KOG1407|consen  166 -NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRLDWPVRTLSFSHDG  243 (313)
T ss_pred             -cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccccCceEEEEeccCc
Confidence             556899995554 5678899999999999999999999999999998 99999999999999977666654 5999999


Q ss_pred             ceEEEee
Q 020784          313 AWLRVLR  319 (321)
Q Consensus       313 ~~la~~~  319 (321)
                      +|||.|+
T Consensus       244 ~~lASaS  250 (313)
T KOG1407|consen  244 RMLASAS  250 (313)
T ss_pred             ceeeccC
Confidence            9999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.94  E-value=7e-25  Score=186.20  Aligned_cols=195  Identities=15%  Similarity=0.190  Sum_probs=161.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|.+-+.||.|-.|+.+|.+.+|.+..+||+++++.+..... |.+.|..+.+.+ ++|.++.++       .|+..+
T Consensus       141 l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~-------cD~~ak  212 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGG-------CDKSAK  212 (343)
T ss_pred             ecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecc-------ccccee
Confidence            46788999999999988766555667788999999988766665 788999999988 777776665       689999


Q ss_pred             EEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE--EC-CEEEEEEcCCcEEEEEEeccCC--CCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVV--LE-QKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~--~~-~~I~iwd~~~~~~~~~l~~~~~--~~~~~~~s~~~d~~~la~  233 (321)
                      |||++.+.++++|..+. .|.+|+|+|+....+  ++ .+.|+||++..+.+..+.....  ++..++|+..+  .+|.+
T Consensus       213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG--RlLfa  290 (343)
T KOG0286|consen  213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG--RLLFA  290 (343)
T ss_pred             eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc--cEEEe
Confidence            99999999999998765 799999999876555  34 5999999999888888875433  44556666654  77764


Q ss_pred             ecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                       |..|.++.+||.-... ...|.+|.+.|+||..+|||.-|+|||+|-+ +|||.
T Consensus       291 -gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~-lriW~  343 (343)
T KOG0286|consen  291 -GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST-LRIWA  343 (343)
T ss_pred             -eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHh-eeecC
Confidence             8999999999976544 5689999999999999999999999999999 99994

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=1.8e-23  Score=183.12  Aligned_cols=224  Identities=17%  Similarity=0.218  Sum_probs=175.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|.++|++++|++++++|++|+.++ +++|++.+.+....... |...+..+.+.++++.+++++       .++.|++
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i   77 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGS-------SDKTIRL   77 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEc-------CCCeEEE
Confidence            36788999999999999999998654 88999988765444443 566777888888887787777       5799999


Q ss_pred             EeCCCCcEEEEEeeCC-ceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ||+.+++.+..+..+. .+.++.|+++  .++++. ++.|++||+.+++.+..+..+...+..+.+++  ++.++++ |+
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~-~~  154 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP--DGTFVAS-SS  154 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC--cCCEEEE-Ec
Confidence            9999887777766544 7999999885  344445 67999999998888888887665555555554  4577763 67


Q ss_pred             CCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc--ceeEEEeecCc
Q 020784          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI--SAQSGLWLSSA  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~--~~~~~~s~d~~  313 (321)
                      .+|.|++||..... ...+..|...|++++|+|+++.|++++.|+. |++||+++++.+.++. ++.  ...+.+++++.
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~  232 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGY  232 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchh-hcCCceEEEEEcCCCc
Confidence            79999999997544 6688899999999999999999999999999 9999999999988873 333  33346666667


Q ss_pred             eEEEe
Q 020784          314 WLRVL  318 (321)
Q Consensus       314 ~la~~  318 (321)
                      +++++
T Consensus       233 ~~~~~  237 (289)
T cd00200         233 LLASG  237 (289)
T ss_pred             EEEEE
Confidence            77665

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=1.3e-24  Score=185.12  Aligned_cols=205  Identities=16%  Similarity=0.202  Sum_probs=159.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCC-ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..+|++.|+.+.|+|+|.+||+|+.| .|.+|++... +-...... |.+.|.-+.+..+++.+..++       .|++|
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~g-------tDk~v  114 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCG-------TDKTV  114 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEec-------CCceE
Confidence            35788999999999999999998874 5889996432 22223333 678888888889999998888       78999


Q ss_pred             EEEeCCCCcEEEEEeeCCc-eeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          159 MIWDDHQSRCIGELSFRSE-VRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~-v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +.||+++|+++..++.+.. |.+++....   .+..++ |+++|+||+++.+.++++...   ..+.++.+..+..-+. 
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---yqltAv~f~d~s~qv~-  190 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---YQLTAVGFKDTSDQVI-  190 (338)
T ss_pred             EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---eeEEEEEeccccccee-
Confidence            9999999999998887764 444543322   222333 369999999998888877532   3355666655544454 


Q ss_pred             ecCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC----CcEEEEEe
Q 020784          234 PGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GTLLQEEC  298 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t----g~~i~~~~  298 (321)
                      +|.-|+.|++||+... .++++.||...|+.|..+++|.++.+-++|.+ +|+||++-    ..|+..+.
T Consensus       191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~  259 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQ  259 (338)
T ss_pred             eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEee
Confidence            5999999999998654 47899999999999999999999999999999 99999985    34566664

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=8.9e-25  Score=190.00  Aligned_cols=218  Identities=16%  Similarity=0.171  Sum_probs=180.3

Q ss_pred             CcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      +..-..|.+=|+||++.|-.++|++|+.|+ ++|||+.+++....... |...+..++++..-.++..++       .|+
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs~g-------edk  215 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAG-------EDK  215 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEEec-------CCC
Confidence            334467889999999999999999999855 77999999998777764 567788888888888888887       689


Q ss_pred             cEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          157 KVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      .||-||++..+.++....+ +.|+++..+|..  ++.++ |.++|+||+++...++.+.+|.+++..+.+.+. |.+++ 
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~-dpqvi-  293 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT-DPQVI-  293 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-CCceE-
Confidence            9999999999988877655 579999999753  44443 469999999999999999999998876665543 22444 


Q ss_pred             eecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEe
Q 020784          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLW  309 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s  309 (321)
                       +|+.|++|++||+..+. ..++..|+..|++++.+|....|||+|.|  .|+-|++..|+.++.+ .++...+..++
T Consensus       294 -t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~nl-sgh~~iintl~  367 (460)
T KOG0285|consen  294 -TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQNL-SGHNAIINTLS  367 (460)
T ss_pred             -EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccCCccchhhcc-ccccceeeeee
Confidence             59999999999998765 67999999999999999999999999988  3799999999999886 46666655554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.1e-25  Score=195.11  Aligned_cols=199  Identities=15%  Similarity=0.183  Sum_probs=147.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCce---eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|.++|.-+.||++|+|||+++.+. ..||.+.....   ..+... |..+|..+.|+|+.+++++++       .+..
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg-------~~e~  292 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACG-------FDEV  292 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecC-------chHh
Confidence            57889999999999999999999855 66998755443   223332 678899999999999998888       4455


Q ss_pred             EEEEeCCCCcEEEEEeeC--CceeEEEEeCC-------------------------------------------------
Q 020784          158 VMIWDDHQSRCIGELSFR--SEVRSVKLRRD-------------------------------------------------  186 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~-------------------------------------------------  186 (321)
                      +++||+.+|.+...+...  ..+.+++|.++                                                 
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEE
Confidence            777777776655444322  24444444433                                                 


Q ss_pred             -----------------------------------eEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCc-
Q 020784          187 -----------------------------------RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS-  228 (321)
Q Consensus       187 -----------------------------------~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~-  228 (321)
                                                         ++++.  .+..|++||+...++++++.+|.....++.-++.+.+ 
T Consensus       373 ~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  373 TVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             ecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence                                               11111  2356777887777777777777776666666666555 


Q ss_pred             eEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCC
Q 020784          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~t  290 (321)
                      .++| ||+.|+.|+||+...+. +.++.||...|+||+|+|. -.+|||||+||| ||||-...
T Consensus       453 ~fia-SGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~  514 (519)
T KOG0293|consen  453 KFIA-SGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD  514 (519)
T ss_pred             ceEE-ecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence            4555 89999999999987765 6799999999999999986 468999999999 99997653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.93  E-value=7.9e-26  Score=199.33  Aligned_cols=213  Identities=10%  Similarity=0.108  Sum_probs=171.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+|..|+|.|+|+.|++|+..| +-+|+...+..+..... |+..|..++|+.++..++.+.       .+|.||+|+..
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa-HDs~Vr~m~ws~~g~wmiSgD-------~gG~iKyWqpn  168 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA-HDSPVRTMKWSHNGTWMISGD-------KGGMIKYWQPN  168 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh-hcccceeEEEccCCCEEEEcC-------CCceEEecccc
Confidence            4899999999999999999977 66999865544333333 799999999999998776655       56999999987


Q ss_pred             CCcEEEEEeeC-CceeEEEEeCC--eEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          165 QSRCIGELSFR-SEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      .........++ ..|++++|+++  .++.|++ ++|+|||+...+.-+.+.+|...+.++++++.  ..++| +|+.|..
T Consensus       169 mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~--kgLia-sgskDnl  245 (464)
T KOG0284|consen  169 MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT--KGLIA-SGSKDNL  245 (464)
T ss_pred             hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc--cceeE-EccCCce
Confidence            65443333334 58999999874  4555654 69999999888877888888887777777664  36666 6999999


Q ss_pred             EEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeec
Q 020784          241 VRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLS  311 (321)
Q Consensus       241 V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d  311 (321)
                      |++||-+++. +.++.+|+..|..+.|++++.+|+|+|.|.. +|+||+++.+.+.++ ++|.+...++.+.
T Consensus       246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~-r~Hkkdv~~~~Wh  315 (464)
T KOG0284|consen  246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTY-RGHKKDVTSLTWH  315 (464)
T ss_pred             eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHh-hcchhhheeeccc
Confidence            9999988765 7799999999999999999999999999999 999999998888887 5777665555433

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.4e-24  Score=187.63  Aligned_cols=247  Identities=14%  Similarity=0.179  Sum_probs=190.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEe
Q 020784           58 FSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEML  136 (321)
Q Consensus        58 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~  136 (321)
                      +.|...+..+..+-+.+.....+ ..|+.+|+.+-|+|+--..+++++++ +++||..+++.+..... |...+..+.+.
T Consensus        82 g~pt~~~~~~~~wipRp~l~~~l-~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-Ht~sv~di~~~  159 (406)
T KOG0295|consen   82 GDPTGSKRTPALWIPRPNLVQKL-AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-HTDSVFDISFD  159 (406)
T ss_pred             CCCCcCccChhhcCCCCCchhhh-hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-cccceeEEEEe
Confidence            34443333344444443223333 34888999999999999999998855 88999999988555444 66778888888


Q ss_pred             cCCCeEEEEeCCCCCCCCCCcEEEEeCCC-CcEEEEEee-CCceeEEEEeC--CeEEEEE-CCEEEEEEcCCcEEEEEEe
Q 020784          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELSF-RSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIE  211 (321)
Q Consensus       137 ~~~~~~~~~sg~~~~~~~d~~v~iWD~~~-~~~~~~~~~-~~~v~~v~~~~--~~~~~~~-~~~I~iwd~~~~~~~~~l~  211 (321)
                      ..+..++.++       .|=.+++||.++ .+++..... ...|.+++|-+  +.++.++ |++|+.|++.++.++++|.
T Consensus       160 a~Gk~l~tcS-------sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~  232 (406)
T KOG0295|consen  160 ASGKYLATCS-------SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP  232 (406)
T ss_pred             cCccEEEecC-------CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence            8888888888       556699999987 445554444 44678888876  4555554 5799999999999999999


Q ss_pred             ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCC---------------CCEEEE
Q 020784          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD---------------GQLLAT  275 (321)
Q Consensus       212 ~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspd---------------g~~las  275 (321)
                      +|...+.++.+.  .|+.++| +++.|.+|++|-..++. ...++.|..+|-|++|-|.               |+++++
T Consensus       233 ~h~ewvr~v~v~--~DGti~A-s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s  309 (406)
T KOG0295|consen  233 GHSEWVRMVRVN--QDGTIIA-SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS  309 (406)
T ss_pred             CchHhEEEEEec--CCeeEEE-ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence            998877666654  5668998 69999999999998876 4589999999999999763               258999


Q ss_pred             EeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCceEEEe
Q 020784          276 SSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAWLRVL  318 (321)
Q Consensus       276 ~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~~  318 (321)
                      +|.|++ ||+||+.+|+|+-++ .||++-+  ++|++-|+||+-+
T Consensus       310 ~SrDkt-Ik~wdv~tg~cL~tL-~ghdnwVr~~af~p~Gkyi~Sc  352 (406)
T KOG0295|consen  310 GSRDKT-IKIWDVSTGMCLFTL-VGHDNWVRGVAFSPGGKYILSC  352 (406)
T ss_pred             ecccce-EEEEeccCCeEEEEE-ecccceeeeeEEcCCCeEEEEE
Confidence            999999 999999999999999 5777644  4667779998764

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=1.2e-22  Score=193.48  Aligned_cols=217  Identities=17%  Similarity=0.246  Sum_probs=158.6

Q ss_pred             cCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCce-------eEEeeeecCCceEEEEEecCC-CeEEEEeCCCC
Q 020784           81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFRE-------IFRRDFERGGGIGVVEMLFRC-NILALVGGGPD  150 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~-------~~~~~~~~~~~v~~v~~~~~~-~~~~~~sg~~~  150 (321)
                      ..+|.+.|++++|+| |+++|++|+.|+ |+|||+.+.+.       +..... |...|..++|++.. +.+++++    
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs----  145 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAG----  145 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEe----
Confidence            457888999999999 899999999866 88999976431       222332 67789999998875 5676666    


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCc-eEEEeeC
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKG-LCAVSQG  225 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~-~~~~s~~  225 (321)
                         .|++|+|||+++++.+..+..+ ..|.+++|+++.  +++++ +++|++||+++++.+.++..|..... .+.+.++
T Consensus       146 ---~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        146 ---ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             ---CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence               6799999999999888777644 579999999764  44443 57999999999999999888765433 3334433


Q ss_pred             CCceEEEeec---CCCCcEEEEeeCCc--ceEEeecc-ccceeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEe
Q 020784          226 VGSLVLVCPG---LQKGQVRVEHYASK--RTKFIMAH-DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       226 ~d~~~la~sG---s~dg~V~i~d~~~~--~~~~l~~H-~~~V~~vafspdg~~las~S~-Dgt~IrIWd~~tg~~i~~~~  298 (321)
                        +..++++|   +.|+.|++||+...  ++.....| ...+....|++++.+|++|+. |++ ||+||+.+++++..+.
T Consensus       223 --~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        223 --KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSS  299 (493)
T ss_pred             --CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEee
Confidence              33444334   45899999998753  33444433 345666789999999998874 998 9999999999887765


Q ss_pred             CCCcceeEEE
Q 020784          299 CPSISAQSGL  308 (321)
Q Consensus       299 ~g~~~~~~~~  308 (321)
                      ..+......+
T Consensus       300 ~~s~~~~~g~  309 (493)
T PTZ00421        300 YSSVEPHKGL  309 (493)
T ss_pred             ccCCCCCcce
Confidence            4444333333

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5e-24  Score=176.17  Aligned_cols=205  Identities=15%  Similarity=0.195  Sum_probs=165.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEE-EEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFA-AGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~la-sg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..+++.|+.+.|+-||+|.+ +|++++|++||...+..+..+.. |++.|..++.+++...++.++       .|+.|.+
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~G-------gDk~v~v   85 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCG-------GDKAVQV   85 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCC-------CCceEEE
Confidence            45778999999999999855 66678999999988887766665 778888888888888887766       3699999


Q ss_pred             EeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE---CCEEEEEEcC--CcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          161 WDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~---~~~I~iwd~~--~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      ||+.+|+.++.+..+. .|..+.|+.+.-++++   |.++|+||-+  ..+.++.|......+..+.++-+   .+++  
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIva--  160 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVA--  160 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEe--
Confidence            9999999999998764 8999999987655554   4699999985  57888888776655555555543   4554  


Q ss_pred             cCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      |+.||+++.+|+..+.+.. .....+|+|++|++||+-+..++.|++ +|+.|-.||++++.|+ ||.
T Consensus       161 GS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYk-Ghk  225 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYK-GHK  225 (307)
T ss_pred             eccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhc-ccc
Confidence            9999999999998776542 334568999999999999888999999 9999999999987773 444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=1.3e-22  Score=205.64  Aligned_cols=224  Identities=16%  Similarity=0.177  Sum_probs=167.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc----ee--EEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCC
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----EI--FRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYP  154 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~----~~--~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~  154 (321)
                      .|.+.|.+++|++||++||+|+.++ |+||++....    ..  ......+...+..++|.+ .+..+++++       .
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-------~  553 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-------F  553 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-------C
Confidence            4778999999999999999999755 8899975321    00  011111245667777765 356666666       6


Q ss_pred             CCcEEEEeCCCCcEEEEEeeC-CceeEEEEeC-C--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCce
Q 020784          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~-~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      |++|+|||+.+++.+..+..+ ..|++++|++ +  .+++++ +++|++||+++++.+.++..+. .+..+.+. .+++.
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~-~v~~v~~~-~~~g~  631 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA-NICCVQFP-SESGR  631 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC-CeEEEEEe-CCCCC
Confidence            799999999999888877654 5799999985 3  345554 5799999999998888887542 23333332 23567


Q ss_pred             EEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC------cEEEEEeCCC
Q 020784          230 VLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEECCPS  301 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg------~~i~~~~~g~  301 (321)
                      +++ +|+.||.|++||....  .+.++.+|...|++++|. ++.+|+|+|.|++ |+|||+..+      ++++++. +|
T Consensus       632 ~la-tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~-gh  707 (793)
T PLN00181        632 SLA-FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFM-GH  707 (793)
T ss_pred             EEE-EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEc-CC
Confidence            777 4999999999998764  356788999999999997 7889999999999 999999853      5677774 55


Q ss_pred             cce--eEEEeecCceEEEee
Q 020784          302 ISA--QSGLWLSSAWLRVLR  319 (321)
Q Consensus       302 ~~~--~~~~s~d~~~la~~~  319 (321)
                      ...  .+.+++++.|||++.
T Consensus       708 ~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        708 TNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             CCCeeEEEEcCCCCEEEEEe
Confidence            543  357788899998864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=5.6e-23  Score=195.50  Aligned_cols=223  Identities=17%  Similarity=0.229  Sum_probs=173.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEe-cCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|...|++++|+|||+++++|++| +++|||+ +.+..+..... |...+.++++.+.+++++.++       .|++||
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs-------~D~tvr  271 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDGNLLVSGS-------DDGTVR  271 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCCCEEEEec-------CCCcEE
Confidence            4678899999999999999999985 5889999 44455555543 788899999999997777766       689999


Q ss_pred             EEeCCCCcEEEEEeeCC-ceeEEEEeCCe--EEEEE-CCEEEEEEcCCcE--EEEEEeccCCC--CceEEEeeCCCceEE
Q 020784          160 IWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVL-EQKIFVYNFADLK--LLHQIETIANP--KGLCAVSQGVGSLVL  231 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~--~~~~l~~~~~~--~~~~~~s~~~d~~~l  231 (321)
                      |||+++++++..+..+. .|.+++|.++.  +++++ ++.|++||+.+++  +++.+..+...  +..+.++  +++.++
T Consensus       272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs--p~~~~l  349 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS--PNGKYL  349 (456)
T ss_pred             EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC--CCCcEE
Confidence            99999999999998776 78999998864  33333 5799999999998  56777766554  4445555  455777


Q ss_pred             EeecCCCCcEEEEeeCCcc-eEEeeccccce---eEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC-cceeE
Q 020784          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRI---ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS-ISAQS  306 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V---~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~-~~~~~  306 (321)
                      + ++..|+.+++|++.... ...+.+|...+   .+..+++.|.++.+|++|+. |++||+.++..+..+. +| ...+.
T Consensus       350 l-~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~-~h~~~~~~  426 (456)
T KOG0266|consen  350 L-SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLE-GHSKAAVS  426 (456)
T ss_pred             E-EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhc-CCCCCcee
Confidence            7 48999999999998654 67888988754   34455788999999999999 9999999998888774 55 44433


Q ss_pred             --EEeecCceEEE
Q 020784          307 --GLWLSSAWLRV  317 (321)
Q Consensus       307 --~~s~d~~~la~  317 (321)
                        .+.+...+++.
T Consensus       427 ~~~~~~~~~~~~s  439 (456)
T KOG0266|consen  427 DLSSHPTENLIAS  439 (456)
T ss_pred             ccccCCCcCeeee
Confidence              44455566554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.92  E-value=4.3e-25  Score=194.69  Aligned_cols=228  Identities=11%  Similarity=0.057  Sum_probs=181.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .+...|..+|+++.|+.+|+++++|+.+| |++|+..-........+ |...|+.+++++....+++++       +|++
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ah-h~eaIRdlafSpnDskF~t~S-------dDg~  203 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAH-HAEAIRDLAFSPNDSKFLTCS-------DDGT  203 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHh-hhhhhheeccCCCCceeEEec-------CCCe
Confidence            34467999999999999999999999988 67997543322222222 457899999999888888888       7899


Q ss_pred             EEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE--E-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          158 VMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~--~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      |+|||....+.-..+..++ .|.+++||+.+-.++  + |+.|++||.++++++.++..|.+.+..+.|+++  +++|+ 
T Consensus       204 ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n--~N~Ll-  280 (464)
T KOG0284|consen  204 IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN--GNWLL-  280 (464)
T ss_pred             EEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC--CCeeE-
Confidence            9999998877655566665 799999999653333  3 359999999999999999998876655555554  48888 


Q ss_pred             ecCCCCcEEEEeeCC-cceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEe--
Q 020784          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLW--  309 (321)
Q Consensus       234 sGs~dg~V~i~d~~~-~~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s--  309 (321)
                      +++.|..++++|+.+ +.+.++++|+..|++++|+|- ..+|++|+.||. |..|.+...+.+.....+|+..+-+++  
T Consensus       281 t~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  281 TGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPPAHDGEIWSLAYH  359 (464)
T ss_pred             EccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCcccccceeeeecc
Confidence            599999999999984 557899999999999999985 578999999999 999999977777778778887776655  


Q ss_pred             ecCceEEEe
Q 020784          310 LSSAWLRVL  318 (321)
Q Consensus       310 ~d~~~la~~  318 (321)
                      +=|..||.+
T Consensus       360 PlGhil~tg  368 (464)
T KOG0284|consen  360 PLGHILATG  368 (464)
T ss_pred             ccceeEeec
Confidence            444666554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.3e-23  Score=193.86  Aligned_cols=218  Identities=11%  Similarity=0.136  Sum_probs=179.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      +..+|.||.|+|...++.++--.| |.|||.++...+...+. .+-+|+...+..+-+.+++.+       +|..|||++
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~Gs-------DD~~IrVfn   83 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGS-------DDMQIRVFN   83 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEec-------CCceEEEEe
Confidence            556999999999999988887755 88999999877666655 366788888877888777766       789999999


Q ss_pred             CCCCcEEEEEeeCC-ceeEEEEeCCeEEE--EECC-EEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          163 DHQSRCIGELSFRS-EVRSVKLRRDRIIV--VLEQ-KIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       163 ~~~~~~~~~~~~~~-~v~~v~~~~~~~~~--~~~~-~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      .++++.+..|+-|. .|.++..||..-.+  ++|+ +|++||.++ ..+.++|++|.+.+..++|.|. |.+.+| |++-
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFa-S~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFA-SASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-Ccccee-eeec
Confidence            99999999998665 79999999976443  4455 999999964 6888999999988888888876 445677 6999


Q ss_pred             CCcEEEEeeCCc-ceEEeeccccceeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCc
Q 020784          238 KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSA  313 (321)
Q Consensus       238 dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg--~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~  313 (321)
                      |++|+||.+... +..+|.+|...|+||.|-+-|  .+|+||++|.+ |||||.+|.+|+++++ ||...+....|-+.
T Consensus       162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~  238 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLE-GHTNNVSFVFFHPE  238 (794)
T ss_pred             cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhh-cccccceEEEecCC
Confidence            999999998764 477999999999999998654  69999999999 9999999999999994 66655554444443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.91  E-value=1.2e-21  Score=171.46  Aligned_cols=225  Identities=16%  Similarity=0.213  Sum_probs=173.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...+.++.|++++++|++++.++ +++|++...+....... |...+..+.+.+++..+++++       .++.|++
T Consensus        48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~  119 (289)
T cd00200          48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSS-------RDKTIKV  119 (289)
T ss_pred             ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec-cCCcEEEEEEcCCCCEEEEec-------CCCeEEE
Confidence            45667889999999999999988654 88999988655544443 456788888887766555544       4699999


Q ss_pred             EeCCCCcEEEEEe-eCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ||+.+++....+. +...+.++.++++  .++++. ++.|++||+++++.+..+..+...+..+.+++  ++..+++ ++
T Consensus       120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~-~~  196 (289)
T cd00200         120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP--DGEKLLS-SS  196 (289)
T ss_pred             EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC--CcCEEEE-ec
Confidence            9999888777776 3457999999984  344444 67999999998888888887765555555554  4455654 56


Q ss_pred             CCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCc
Q 020784          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSA  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~  313 (321)
                      .+|.|++||..... +..+..|...|.+++|++++.++++++.||. |++||+.+++.+..+. ++...+  +.++.++.
T Consensus       197 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~  274 (289)
T cd00200         197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGK  274 (289)
T ss_pred             CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEcc-ccCCcEEEEEECCCCC
Confidence            69999999998654 5567789999999999999999999998999 9999999999988886 554333  45666778


Q ss_pred             eEEEee
Q 020784          314 WLRVLR  319 (321)
Q Consensus       314 ~la~~~  319 (321)
                      +|+++.
T Consensus       275 ~l~~~~  280 (289)
T cd00200         275 RLASGS  280 (289)
T ss_pred             EEEEec
Confidence            887753

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=9.7e-23  Score=174.36  Aligned_cols=225  Identities=16%  Similarity=0.228  Sum_probs=173.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ..|..++.+|+|.++.+.+..|.++.|+.+|+.++.......  |+..+.+++.....+.+++++       -|++|++|
T Consensus        51 ~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igt--h~~~i~ci~~~~~~~~vIsgs-------WD~~ik~w  121 (323)
T KOG1036|consen   51 FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGT--HDEGIRCIEYSYEVGCVISGS-------WDKTIKFW  121 (323)
T ss_pred             eecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeecc--CCCceEEEEeeccCCeEEEcc-------cCccEEEE
Confidence            456779999999997765555555669999999988765555  689999999887777776666       57999999


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccC--CCCceEEEeeCCCceEEEeecCCC
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~--~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      |.+....+..+.....|+++....+.+++++ +..|.+||+++.+.........  -.+.++++-++..  -.++ ++.|
T Consensus       122 D~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e--Gy~~-sSie  198 (323)
T KOG1036|consen  122 DPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE--GYVV-SSIE  198 (323)
T ss_pred             eccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC--ceEE-Eeec
Confidence            9998777777777779999999999999965 5699999999876544222211  1233455555443  3442 8999


Q ss_pred             CcEEEEeeCCc-----ceEEeecccc---------ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC-Ccc
Q 020784          239 GQVRVEHYASK-----RTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP-SIS  303 (321)
Q Consensus       239 g~V~i~d~~~~-----~~~~l~~H~~---------~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g-~~~  303 (321)
                      |.|.+..+...     .-..|+.|..         +|++|+|+|-...||||+.||. |.+||+.+.|.+.++..- ...
T Consensus       199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~~~~SI  277 (323)
T KOG1036|consen  199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAKYETSI  277 (323)
T ss_pred             ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccCCCCce
Confidence            99999544433     2347888853         6999999999999999999999 999999999999888554 445


Q ss_pred             eeEEEeecCceEEEee
Q 020784          304 AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       304 ~~~~~s~d~~~la~~~  319 (321)
                      ..++|+.||..||+|.
T Consensus       278 ~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  278 SSLSFSMDGSLLAIAS  293 (323)
T ss_pred             EEEEeccCCCeEEEEe
Confidence            6679999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=4.5e-22  Score=167.31  Aligned_cols=218  Identities=11%  Similarity=0.121  Sum_probs=178.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|+.+++-|.++.+|.+|.+++.|. .-||-...++.+-.+.. |.+.|-++++..++..+++.+       .|++++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGS-------AD~t~k   77 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGS-------ADQTAK   77 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeecc-------ccceeE
Confidence            357889999999999999999988865 55999888888877776 789999999999998888777       689999


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC------CEEEEEEcC-------CcEEEEEEeccCCCCceEEEee
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE------QKIFVYNFA-------DLKLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~------~~I~iwd~~-------~~~~~~~l~~~~~~~~~~~~s~  224 (321)
                      +||+.+|+++..++....|..+.|+..  .++++++      +.|.++|++       ..+++.++..+........+.+
T Consensus        78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            999999999999999999999999864  4445554      489999997       4556777777765554555554


Q ss_pred             CCCceEEEeecCCCCcEEEEeeCCcce--EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~~~~--~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      -  +..|+ +|..||.|.+||..++..  ..-+.|...|+.+.|++|..+|+|+|.|.+ -++||+.+.+++++|.....
T Consensus       158 l--~~~ii-~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~P  233 (327)
T KOG0643|consen  158 L--GETII-AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTERP  233 (327)
T ss_pred             c--CCEEE-EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeeccc
Confidence            3  46666 499999999999987643  355779999999999999999999999999 99999999999999976554


Q ss_pred             ceeEEEee
Q 020784          303 SAQSGLWL  310 (321)
Q Consensus       303 ~~~~~~s~  310 (321)
                      ....++++
T Consensus       234 vN~aaisP  241 (327)
T KOG0643|consen  234 VNTAAISP  241 (327)
T ss_pred             ccceeccc
Confidence            43445554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.91  E-value=2.2e-22  Score=175.47  Aligned_cols=227  Identities=16%  Similarity=0.158  Sum_probs=174.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .-..|+..|+|+.||-||.+||+|+-+| |+||...++........ ....+..+.|++....++..+       .||.|
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~illAG~-------~DGsv  172 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHILLAGS-------TDGSV  172 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEEEeec-------CCCcE
Confidence            3467899999999999999999999866 78999999887665532 256788889998777776655       68999


Q ss_pred             EEEeCCCCcEEEEEeeCC-ceeEEEEeCCe--EEEE-ECCEEEEEEcCCcEEEEEEeccCCC---------Cc-------
Q 020784          159 MIWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVV-LEQKIFVYNFADLKLLHQIETIANP---------KG-------  218 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~---------~~-------  218 (321)
                      -.|.+.++...+.+..+. ++.+-+|.++.  ++.+ .+++|++||..+++.++++....+.         ..       
T Consensus       173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            999999876666666654 67787887753  4444 3579999999999998887621100         00       


Q ss_pred             -------------eEEEeeC-----------------------CCceEEEeecCCCCcEEEEeeCCcceEEeecccccee
Q 020784          219 -------------LCAVSQG-----------------------VGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA  262 (321)
Q Consensus       219 -------------~~~~s~~-----------------------~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~  262 (321)
                                   .+..+.+                       ..-.+.| .|+.||+|.|||+....+...-.|...|.
T Consensus       253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A-~G~vdG~i~iyD~a~~~~R~~c~he~~V~  331 (399)
T KOG0296|consen  253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAA-CGSVDGTIAIYDLAASTLRHICEHEDGVT  331 (399)
T ss_pred             CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhh-cccccceEEEEecccchhheeccCCCceE
Confidence                         0011111                       1112334 48889999999999888888888999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EEeecCceEEEe
Q 020784          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GLWLSSAWLRVL  318 (321)
Q Consensus       263 ~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~s~d~~~la~~  318 (321)
                      .+.|-+ ..+|++++.||+ ||+||.++|+++.+| +||...++  +++++.+++..+
T Consensus       332 ~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~~~~~vvT~  386 (399)
T KOG0296|consen  332 KLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTY-TGHQMGILDFALSPQKRLVVTV  386 (399)
T ss_pred             EEEEcC-cchheeeccCce-EEeeeccccceEEEE-ecCchheeEEEEcCCCcEEEEe
Confidence            999998 778889999999 999999999999999 68998777  556777777654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.91  E-value=4.2e-24  Score=192.00  Aligned_cols=226  Identities=12%  Similarity=0.101  Sum_probs=176.5

Q ss_pred             cCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecC-CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .++|+..|+++.|.| .+.+|++|+.|+ |.||++-. .+++..... |..+|..+.++.++..+.+++       .|+.
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~s-------fD~~  281 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSAS-------FDRF  281 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeee-------ccee
Confidence            368889999999999 889999998876 78999866 455444443 788899999999998888888       7899


Q ss_pred             EEEEeCCCCcEEEEEeeCCceeEEEEeCCe---EEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~---~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      ||+||+++|+++..+.....++++.|+++.   ++++ .++.|+.||+++++.++.+..|.+.+..+.|-.  ++..++ 
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~--~g~rFi-  358 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD--EGRRFI-  358 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc--CCceEe-
Confidence            999999999999999999999999999863   4444 457999999999999999988877665555544  456666 


Q ss_pred             ecCCCCcEEEEeeCCc-----------------------------------------------ceEEeeccc--cceeEE
Q 020784          234 PGLQKGQVRVEHYASK-----------------------------------------------RTKFIMAHD--SRIACF  264 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~-----------------------------------------------~~~~l~~H~--~~V~~v  264 (321)
                      +.+.|+.++||++...                                               ..+.|.+|.  +.-..|
T Consensus       359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v  438 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV  438 (503)
T ss_pred             eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence            5789999999985321                                               112355664  345778


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecC---ceEEEee
Q 020784          265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSS---AWLRVLR  319 (321)
Q Consensus       265 afspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~---~~la~~~  319 (321)
                      .|||||.+|++|+.||. +.+||.++-+++.+++.. +...+...+-+   +.+|.|.
T Consensus       439 ~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~  494 (503)
T KOG0282|consen  439 DFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCG  494 (503)
T ss_pred             EEcCCCCeEEeecCCcc-EEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecc
Confidence            99999999999999999 999999999999999654 44444333322   5555553

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.4e-23  Score=182.51  Aligned_cols=193  Identities=14%  Similarity=0.163  Sum_probs=154.7

Q ss_pred             CCCCCCeEEEEEcC-----CCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQ-----DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        82 ~~~~~~V~~v~fs~-----dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      +.|.--|++++|.|     ..++||+++.|| ++|||+..+.+++.... |...|.|+.|-.. .++...+       .|
T Consensus       197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCvrwGG~-gliySgS-------~D  267 (480)
T KOG0271|consen  197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCVRWGGE-GLIYSGS-------QD  267 (480)
T ss_pred             cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEEEEcCC-ceEEecC-------CC
Confidence            57888999999976     678999999866 99999999888777765 6778888876432 3444444       68


Q ss_pred             CcEEEEeCCCCcEEEEEeeC------------------------------------------------------------
Q 020784          156 NKVMIWDDHQSRCIGELSFR------------------------------------------------------------  175 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~------------------------------------------------------------  175 (321)
                      ++||+|+...|.+..+++.+                                                            
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            99999987665443332211                                                            


Q ss_pred             --------------------CceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          176 --------------------SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       176 --------------------~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                                          ..|..+.|+|+..++++   |+.||+||.++|+.+.+|.+|...+..++++.+.  .+|+
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs--RLlV  425 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS--RLLV  425 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc--cEEE
Confidence                                12455666666655553   6799999999999999999999998888888754  7777


Q ss_pred             eecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          233 CPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                       ||+.|.++++|+.+++.+. -|.+|..+|.++.|+|||..+|+|+.|+- +|+|.
T Consensus       426 -S~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv-~~lw~  479 (480)
T KOG0271|consen  426 -SGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKV-LRLWR  479 (480)
T ss_pred             -EcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceE-EEeec
Confidence             7999999999999998865 79999999999999999999999999998 99994

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=8.7e-22  Score=199.69  Aligned_cols=221  Identities=14%  Similarity=0.124  Sum_probs=169.4

Q ss_pred             CCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           85 PPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        85 ~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ...|.+++|++ ++.+||+|+.++ |+|||+.+.+.+..... |.+.|..+++++ +++.+++++       .|++|++|
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iW  603 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGS-------DDGSVKLW  603 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEE
Confidence            45799999987 478899988765 78999998876655544 678899999986 567777776       67999999


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeC---CeEEEEE-CCEEEEEEcCCcE-EEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~-~~~I~iwd~~~~~-~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      |++++..+..+..+..|.++.|++   ..+++++ ++.|++||+++.+ .+..+.+|...+..+.+.   ++..++ +|+
T Consensus       604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~---~~~~lv-s~s  679 (793)
T PLN00181        604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV---DSSTLV-SSS  679 (793)
T ss_pred             ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe---CCCEEE-EEE
Confidence            999999888888777899999853   3455554 5799999998765 456777776666556654   235666 589


Q ss_pred             CCCcEEEEeeCC-------cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC----------
Q 020784          237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC----------  299 (321)
Q Consensus       237 ~dg~V~i~d~~~-------~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~----------  299 (321)
                      .||.|++||+..       ..+.++.+|...+++++|++++.+||+|+.|++ |+||+......+..+..          
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~  758 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLE  758 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCcccccc
Confidence            999999999863       346789999999999999999999999999999 99999887765543321          


Q ss_pred             --CCcceeE--EEeecCceEEEe
Q 020784          300 --PSISAQS--GLWLSSAWLRVL  318 (321)
Q Consensus       300 --g~~~~~~--~~s~d~~~la~~  318 (321)
                        .+...+.  +++.++.+|+++
T Consensus       759 ~~~~~~~V~~v~ws~~~~~lva~  781 (793)
T PLN00181        759 VDDASQFISSVCWRGQSSTLVAA  781 (793)
T ss_pred             cCCCCcEEEEEEEcCCCCeEEEe
Confidence              1122233  556677787765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7.4e-23  Score=175.81  Aligned_cols=228  Identities=19%  Similarity=0.204  Sum_probs=158.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee---cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ...+|...|++++|+.||++||+.++|+ ||||+++.+...-++.++   .-+.-..|.+.+++..+++....      .
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~------g  154 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR------G  154 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc------C
Confidence            3467888999999999999999988755 889999776432222221   12355677888888877766532      3


Q ss_pred             CcEEEEeCCCCc---EEEE------EeeC----CceeEEEEeC--CeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCce
Q 020784          156 NKVMIWDDHQSR---CIGE------LSFR----SEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       156 ~~v~iWD~~~~~---~~~~------~~~~----~~v~~v~~~~--~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                      +++++|.+.+.+   .-..      +.++    ..+.++-.-.  ..+..++ +.+|.+|++. |+.++++.+......-
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence            678888764322   1110      1111    1233333333  3344444 4699999999 8888998876555566


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCC---------cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~---------~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      ++++|++  .++|++|.. -.|++|..-.         .....|++|.+.|...|||++.+.++|.|.||+ +||||+.=
T Consensus       234 aavSP~G--RFia~~gFT-pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdV  309 (420)
T KOG2096|consen  234 AAVSPDG--RFIAVSGFT-PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDV  309 (420)
T ss_pred             eeeCCCC--cEEEEecCC-CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccc
Confidence            7787754  889875554 4788887531         134579999999999999999999999999999 99999762


Q ss_pred             ----C---cEEEEE-----eCCCcceeEEEeecCceEEEe
Q 020784          291 ----G---TLLQEE-----CCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       291 ----g---~~i~~~-----~~g~~~~~~~~s~d~~~la~~  318 (321)
                          +   +.+++.     ..|....++.++++|+-||++
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s  349 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS  349 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence                2   222222     235566788999999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.91  E-value=9.3e-22  Score=178.57  Aligned_cols=216  Identities=17%  Similarity=0.265  Sum_probs=176.2

Q ss_pred             CcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ..+...|..+|+-..|+|.|-|+|+|...| |||||+...+.+.+.+++ -.++|..+.|.+++..++.++.|++   .=
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre---rf  128 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE---RF  128 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc---ce
Confidence            344566777999999999999999999854 999998776666565553 2588999999999999999998865   22


Q ss_pred             CcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCC---eEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          156 NKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD---RIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~---~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      +.+.+||  +|..+.++..++ .|.++.|.+.   +++.+++ +.|-+|+-.-.+...++..|..-+.++.++|+  +..
T Consensus       129 g~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~  204 (603)
T KOG0318|consen  129 GHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSR  204 (603)
T ss_pred             eEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC--CCe
Confidence            6677777  556667777765 6888888764   4556655 59999999888888888888887777777765  577


Q ss_pred             EEeecCCCCcEEEEeeCCcc-eEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          231 LVCPGLQKGQVRVEHYASKR-TKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~-~~~l~---~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      +| +.+.||+|.++|-.++. +..|.   +|++.|.+|+|+||+..|+|+|.|.+ +||||+.+.++++++..+..
T Consensus       205 Fa-t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  205 FA-TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             EE-EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCc
Confidence            87 47889999999977765 55776   89999999999999999999999999 99999999999999987766

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.6e-22  Score=180.74  Aligned_cols=219  Identities=16%  Similarity=0.232  Sum_probs=166.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ..|.+++|-.||++||+|++-| |+|||+.+...+..... |..++..+.+++..+.+++.++      +|+.+++||+.
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~s------Dd~v~k~~d~s  141 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGS------DDKVVKYWDLS  141 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecC------CCceEEEEEcC
Confidence            4799999999999999999966 78999666333322222 6889999999988877765553      47999999999


Q ss_pred             CCcEEEEEeeCC-ceeEEEEeCC--eEEEEE--CCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          165 QSRCIGELSFRS-EVRSVKLRRD--RIIVVL--EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       165 ~~~~~~~~~~~~-~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      +.....++..+. .|.+.+|++-  .+++.+  |++||+||++.. ..+.++.. ..++..+.+-+.  +.++|..|+  
T Consensus       142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~pVe~vl~lps--gs~iasAgG--  216 (487)
T KOG0310|consen  142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCPVESVLALPS--GSLIASAGG--  216 (487)
T ss_pred             CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC-CCceeeEEEcCC--CCEEEEcCC--
Confidence            888755666554 7999999863  444443  689999999876 55666654 345544444443  367774333  


Q ss_pred             CcEEEEeeCCc-ceEE-eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          239 GQVRVEHYASK-RTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       239 g~V~i~d~~~~-~~~~-l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      ..|+|||+.++ ++.. +..|...|+|+++..++..|.|||-||. |||||+.+.+.++.++.....-.++++++++-++
T Consensus       217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeeecccceeeEEecCCCceEE
Confidence            48999999854 4443 4449999999999999999999999999 9999999999999998777666678889888776


Q ss_pred             E
Q 020784          317 V  317 (321)
Q Consensus       317 ~  317 (321)
                      +
T Consensus       296 i  296 (487)
T KOG0310|consen  296 I  296 (487)
T ss_pred             E
Confidence            5

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3e-22  Score=170.92  Aligned_cols=228  Identities=15%  Similarity=0.151  Sum_probs=176.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|.++|.+++|+.||..+++|+. +.+++||+.+++......  |+++|..+.|....++-.++.|+     -|++||
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~~~cl~TGS-----WDKTlK  140 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMNYQCLVTGS-----WDKTLK  140 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee--cccceeEEEEecCCCcceeEecc-----ccccee
Confidence            3567889999999999999888876 558999999986543333  79999999998877755556655     579999


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEEC-CEEEEEEcCCcEEE-EEEeccC-CCCceEEEeeCCCceEEEeecC
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLL-HQIETIA-NPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~-~~l~~~~-~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      .||++....+.++++...++++......+++++. ..|.+|+++++... +.++... ..+.++++..+.++.  |+ |+
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~--al-Gs  217 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF--AL-GS  217 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce--Ee-ee
Confidence            9999999999999999999999998888888875 59999999765332 2222221 124566666666554  43 89


Q ss_pred             CCCcEEEEeeCC---cceEEeecccc---------ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc-c
Q 020784          237 QKGQVRVEHYAS---KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI-S  303 (321)
Q Consensus       237 ~dg~V~i~d~~~---~~~~~l~~H~~---------~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~-~  303 (321)
                      .+|.|.|-.+..   +.-.+|+.|..         .|++|+|+|....|||++.||+ +..||-.....+++...-.. .
T Consensus       218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~~~qpI  296 (347)
T KOG0647|consen  218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSETHPQPI  296 (347)
T ss_pred             ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCcCCCcc
Confidence            999999955443   34558888874         4899999999999999999999 99999998888887754333 3


Q ss_pred             eeEEEeecCceEEEee
Q 020784          304 AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       304 ~~~~~s~d~~~la~~~  319 (321)
                      ..-.|..+|+++|.|-
T Consensus       297 tcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  297 TCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ceeEecCCCCEEEEEe
Confidence            3447889999999874

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=3.1e-21  Score=185.14  Aligned_cols=204  Identities=11%  Similarity=0.129  Sum_probs=149.1

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecCCce--------eEEeeeecCCceEEEEEecCCCeEE-EEeCCC
Q 020784           81 SSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE--------IFRRDFERGGGIGVVEMLFRCNILA-LVGGGP  149 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~~~~--------~~~~~~~~~~~v~~v~~~~~~~~~~-~~sg~~  149 (321)
                      ...|.+.|.+++|+|+ +.+||+|+.|+ |+|||+.+...        ...... |.+.|..++|++++..++ +++   
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS---  145 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSG---  145 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEe---
Confidence            3578889999999997 78999999865 88999875421        111222 678899999998876554 444   


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEe---
Q 020784          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS---  223 (321)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s---  223 (321)
                          .|++|+|||+++++.+..+.+...|.++.|+++.  +++++ ++.|+|||+++++.++++.+|........+.   
T Consensus       146 ----~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        146 ----FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             ----CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence                5799999999999887777777789999998764  33333 5799999999999999999887654433332   


Q ss_pred             eCCCceEEEeecCCC---CcEEEEeeCC--cceEEe--eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          224 QGVGSLVLVCPGLQK---GQVRVEHYAS--KRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       224 ~~~d~~~la~sGs~d---g~V~i~d~~~--~~~~~l--~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      ..+++.+++++|..+   +.|+|||+..  +++..+  ..+.+.+......++|.++++|+.|++ ||+|++..+.+
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~~  297 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGSI  297 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCcE
Confidence            234556666545443   4799999884  334433  233344444445567999999999999 99999988753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.7e-21  Score=162.94  Aligned_cols=200  Identities=14%  Similarity=0.173  Sum_probs=160.9

Q ss_pred             cccCCCCCCeEEEEEcCC-CCEEEEEcC-CcEEEEEecCCc---eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           79 STSSSPPPTLLHISFNQD-HGCFAAGTD-HGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~d-g~~lasg~~-~gv~vw~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      ....+|.++|..++|+|- |..||+|+. +.||||+.....   +.....-.|...|+.++++|.++++++++       
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-------   80 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-------   80 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-------
Confidence            344678889999999998 899998887 669999987422   22122112678899999999999999888       


Q ss_pred             CCCcEEEEeCCC--CcEEEEEeeCC-ceeEEEEeCCe--EEEEE-CCEEEEEEcC---CcEEEEEEeccCCCCceEEEee
Q 020784          154 PLNKVMIWDDHQ--SRCIGELSFRS-EVRSVKLRRDR--IIVVL-EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       154 ~d~~v~iWD~~~--~~~~~~~~~~~-~v~~v~~~~~~--~~~~~-~~~I~iwd~~---~~~~~~~l~~~~~~~~~~~~s~  224 (321)
                      .|.++.||.-..  .+++..++.+. +|.+++|+.+.  ++.|+ ++.|=||.+.   ..+++..++.|.+.+..+.++|
T Consensus        81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence            789999998654  45788887765 89999999765  44454 5699999985   4677888899999888888877


Q ss_pred             CCCceEEEeecCCCCcEEEEeeC-Cc---ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYA-SK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~-~~---~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      ..  .+|+ |+++|.+|++|+.. ..   ...+|.+|.+.|.+++|++.|..|+++++|++ |+||.+.
T Consensus       161 t~--dlL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~  225 (312)
T KOG0645|consen  161 TE--DLLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLY  225 (312)
T ss_pred             Cc--ceeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeec
Confidence            54  5666 79999999997655 22   35689999999999999999999999999999 9999854

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.90  E-value=5.5e-22  Score=169.20  Aligned_cols=232  Identities=11%  Similarity=0.115  Sum_probs=177.7

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      ..+-...+|.+.|..+.|+.|+..|++++. +.++.||+++++..+.... |..-+..+...-.+ ...++++.     .
T Consensus        81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg-~~lv~Sgs-----d  153 (338)
T KOG0265|consen   81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRG-PQLVCSGS-----D  153 (338)
T ss_pred             cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccC-CeEEEecC-----C
Confidence            334455689999999999999998887665 6799999999988665443 45555555533233 33444544     5


Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEE
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      |+++||||+++.++++++....+++++.|...  .+..+ -++.|++||+++.+..+++.+|..++.-+++++.  |.++
T Consensus       154 D~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~--gs~l  231 (338)
T KOG0265|consen  154 DGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY--GSFL  231 (338)
T ss_pred             CceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccC--CCcc
Confidence            79999999999999998888889999999753  44444 4789999999999999999999988777777665  4666


Q ss_pred             EeecCCCCcEEEEeeCC-----cceEEeecccc----ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          232 VCPGLQKGQVRVEHYAS-----KRTKFIMAHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~-----~~~~~l~~H~~----~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      . +-+-|.+|++||...     +++..+.+|..    ....++|+|+++++..||.|+. +.|||..+..+++.+ -||.
T Consensus       232 l-snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lykl-pGh~  308 (338)
T KOG0265|consen  232 L-SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKL-PGHY  308 (338)
T ss_pred             c-cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEc-CCcc
Confidence            6 588899999999863     34677777643    2456799999999999999999 999999999999888 5777


Q ss_pred             ceeEE--EeecCceEEEee
Q 020784          303 SAQSG--LWLSSAWLRVLR  319 (321)
Q Consensus       303 ~~~~~--~s~d~~~la~~~  319 (321)
                      ..+..  |.+.-..|..++
T Consensus       309 gsvn~~~Fhp~e~iils~~  327 (338)
T KOG0265|consen  309 GSVNEVDFHPTEPIILSCS  327 (338)
T ss_pred             eeEEEeeecCCCcEEEEec
Confidence            66654  444445555443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.90  E-value=1.7e-23  Score=181.50  Aligned_cols=192  Identities=10%  Similarity=0.257  Sum_probs=151.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|.+.|.|+.|.  .+.|++|+. .+|+|||+++++.+....+ |-..|  +...|..+++++++       .|++++
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih-HceaV--Lhlrf~ng~mvtcS-------kDrsia  300 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAV--LHLRFSNGYMVTCS-------KDRSIA  300 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh-hccee--EEEEEeCCEEEEec-------CCceeE
Confidence            36899999999986  458888886 5699999999987655543 33344  44556777888888       789999


Q ss_pred             EEeCCCCcEEE---EE-eeCCceeEEEEeCCeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          160 IWDDHQSRCIG---EL-SFRSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       160 iWD~~~~~~~~---~~-~~~~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +||+.....+.   -+ .+...|..|.|..+.++.+++ .+|++|++.+++.++++.+|...  +.+....+  .+++ |
T Consensus       301 VWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRG--IAClQYr~--rlvV-S  375 (499)
T KOG0281|consen  301 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG--IACLQYRD--RLVV-S  375 (499)
T ss_pred             EEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhccccc--ceehhccC--eEEE-e
Confidence            99987654221   12 233578889999887777754 59999999999999999988654  44555543  6666 7


Q ss_pred             cCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          235 GLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      |+.|.+|++||...+. +.++.||..-|+||.|.  .+.+++|++||+ |||||+.++.
T Consensus       376 GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aal  431 (499)
T KOG0281|consen  376 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAAL  431 (499)
T ss_pred             cCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEeccccc
Confidence            9999999999998765 67999999999999995  578999999999 9999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=1.8e-22  Score=189.49  Aligned_cols=224  Identities=11%  Similarity=0.124  Sum_probs=172.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCcee----EEeeeecCCceEEEEEecCCCe-EEEEeCCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQY  153 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~----~~~~~~~~~~v~~v~~~~~~~~-~~~~sg~~~~~~  153 (321)
                      +-.+|...|.++....+|.+||+|+. +.+++|.++.....    ..... |.+.|+.++++..+.. +++++       
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS-------  431 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVS-------  431 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEec-------
Confidence            45789999999998888999999997 56999987443221    11122 7888999988655443 44444       


Q ss_pred             CCCcEEEEeCCCCcE-----EE-----EEeeCCceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceE
Q 020784          154 PLNKVMIWDDHQSRC-----IG-----ELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLC  220 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~-----~~-----~~~~~~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~  220 (321)
                      .|.++|+|++...+.     +.     ...|+..|.+|++.++.-++++   |++.+||++.+.++..++.+|...+.++
T Consensus       432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V  511 (775)
T KOG0319|consen  432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV  511 (775)
T ss_pred             CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence            689999999876221     11     1224568999999987655553   4699999999999999999998766666


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      .|++.  .+++| ++|.|++|+||.+.+.. +++|.||...|..+.|-.+|..|+||+.||- ||||++++++|+.++. 
T Consensus       512 ~Fs~~--dq~la-T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tlD-  586 (775)
T KOG0319|consen  512 SFSKN--DQLLA-TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTLD-  586 (775)
T ss_pred             Eeccc--cceeE-eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhhh-
Confidence            66654  37888 59999999999998765 8899999999999999999999999999999 9999999999999995 


Q ss_pred             CCcceeEEE--eecCceEE
Q 020784          300 PSISAQSGL--WLSSAWLR  316 (321)
Q Consensus       300 g~~~~~~~~--s~d~~~la  316 (321)
                      +|....=++  ++.+..+.
T Consensus       587 ~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  587 AHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             hccceeEEEeecCccceeE
Confidence            555444333  44445443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=7.6e-23  Score=188.02  Aligned_cols=225  Identities=20%  Similarity=0.299  Sum_probs=171.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEE
Q 020784           55 PDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVV  133 (321)
Q Consensus        55 p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v  133 (321)
                      |++..|.+|.  +....+.+.......++|.+.|+||+..|.|.+||+|+++| ||||.+.+++++.+..+  ++.|.+|
T Consensus       372 pe~LiPkLPs--p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~v  447 (733)
T KOG0650|consen  372 PESLIPKLPS--PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSV  447 (733)
T ss_pred             HHHhcccCCC--hhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEE
Confidence            4556666664  44444445456666789999999999999999999999976 88999999999999888  8899999


Q ss_pred             EEecCCC--eEEEEeCCCC-------------------------CCCCCCcEEEEeCC---CC--cEEEEEeeCCceeEE
Q 020784          134 EMLFRCN--ILALVGGGPD-------------------------PQYPLNKVMIWDDH---QS--RCIGELSFRSEVRSV  181 (321)
Q Consensus       134 ~~~~~~~--~~~~~sg~~~-------------------------~~~~d~~v~iWD~~---~~--~~~~~~~~~~~v~~v  181 (321)
                      +|.+.++  .+|++.+...                         -..-++++..|.-.   .+  .....+.+...|.++
T Consensus       448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v  527 (733)
T KOG0650|consen  448 AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV  527 (733)
T ss_pred             EecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence            9988664  3444433320                         01224667788633   11  122334444455555


Q ss_pred             EEeCC-----------------------------------------------eEEEEECCEEEEEEcCCcEEEEEEeccC
Q 020784          182 KLRRD-----------------------------------------------RIIVVLEQKIFVYNFADLKLLHQIETIA  214 (321)
Q Consensus       182 ~~~~~-----------------------------------------------~~~~~~~~~I~iwd~~~~~~~~~l~~~~  214 (321)
                      .||++                                               .+++++...|||||+..+++++++....
T Consensus       528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~  607 (733)
T KOG0650|consen  528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS  607 (733)
T ss_pred             eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC
Confidence            55543                                               5788889999999998888888888888


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCCcEEEEeeC--CcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      .++..+++++.+|+. ++  |+.|+.++++|+.  ++++++++.|...|++|+|++.-.+||+||.||+ +.||-
T Consensus       608 kwiS~msihp~GDnl-i~--gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfh  678 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNL-IL--GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFH  678 (733)
T ss_pred             eeeeeeeecCCCCeE-EE--ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEe
Confidence            888889999988753 33  8999999997765  5678899999999999999999999999999999 88884

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.89  E-value=2.7e-21  Score=184.83  Aligned_cols=203  Identities=16%  Similarity=0.229  Sum_probs=166.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|.+.|.+++|..-+.+|++|+. .+++|||+.++++...... |...+.++..  ....+.  +|+     .|.+|+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~--~~~~~~--sgs-----~D~tVk  314 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTI--DPFLLV--SGS-----RDNTVK  314 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEc--cCceEe--ecc-----CCceEE
Confidence            3689999999999997888999985 7799999999999877764 5555655543  233333  333     579999


Q ss_pred             EEeCCCCcEEEEEe-eCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       160 iWD~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +||+.++.++..+. +...|.++..+.+.++.++ +++|++||+.++++++++.+|...+....+  ++. ..+. +|+.
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~--~~~-~~~~-Sgs~  390 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV--DSE-NRLL-SGSL  390 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe--cCc-ceEE-eeee
Confidence            99999999999998 6679999999988877775 569999999999999999998776555433  332 3444 7999


Q ss_pred             CCcEEEEeeCCc--ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          238 KGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       238 dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      |+.|++||+.++  .++++.+|.+.|.++.+  .+++|++++.|++ ||+||..++++++++...
T Consensus       391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC
Confidence            999999999987  57899999999977766  4789999999999 999999999999999653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.3e-21  Score=161.90  Aligned_cols=231  Identities=16%  Similarity=0.158  Sum_probs=177.7

Q ss_pred             CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeC
Q 020784           69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG  147 (321)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg  147 (321)
                      +|++..........+|..+|..++.+.|...|++|+. +.+.+||+.+++....+.. |.+.|..+.+.-+...+  ++|
T Consensus        43 LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg-H~aqVNtV~fNeesSVv--~Sg  119 (307)
T KOG0316|consen   43 LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG-HLAQVNTVRFNEESSVV--ASG  119 (307)
T ss_pred             eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc-ccceeeEEEecCcceEE--Eec
Confidence            6777776666677788899999999999988886655 6688999999998766554 67788887765555444  444


Q ss_pred             CCCCCCCCCcEEEEeCCCC--cEEEEEee-CCceeEEEEeCCeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEe
Q 020784          148 GPDPQYPLNKVMIWDDHQS--RCIGELSF-RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~--~~~~~~~~-~~~v~~v~~~~~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s  223 (321)
                      +     .|.++++||.+..  +.++.+.. ...|.++.+....++.+ .|+++|.||++.+++....-+  +++.+++|+
T Consensus       120 s-----fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s  192 (307)
T KOG0316|consen  120 S-----FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFS  192 (307)
T ss_pred             c-----ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEec
Confidence            4     6799999999865  45666543 34799999988777666 478999999999987655443  577788888


Q ss_pred             eCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccc--eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          224 QGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       224 ~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~--V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      .+++ ..||  |+-|+++++.|-.++. +..+++|.+.  =..++++....++++||+||. |.+||+..++.+..+...
T Consensus       193 ~d~n-c~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~-Vy~wdLvd~~~~sk~~~~  268 (307)
T KOG0316|consen  193 KDGN-CSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK-VYFWDLVDETQISKLSVV  268 (307)
T ss_pred             CCCC-EEEE--eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce-EEEEEeccceeeeeeccC
Confidence            7653 3444  7999999998887766 5689999875  345677888889999999999 999999999999999766


Q ss_pred             CcceeEEEeecCc
Q 020784          301 SISAQSGLWLSSA  313 (321)
Q Consensus       301 ~~~~~~~~s~d~~  313 (321)
                      .......++.-+.
T Consensus       269 ~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  269 STVIVTDLSCHPT  281 (307)
T ss_pred             CceeEEeeecccC
Confidence            6655556665553

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.89  E-value=1.3e-21  Score=187.08  Aligned_cols=216  Identities=16%  Similarity=0.226  Sum_probs=173.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEE-eeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFR-RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      +...|.|..|.  +.++.+|++ ..+++|+..++..+.. ... |.+.+..+++...++.+++++       .|+++|||
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS-------~D~t~rvW  276 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGS-------TDKTERVW  276 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEe-------cCCcEEeE
Confidence            45578888888  456777776 5577999999887766 443 788899988876677887777       78999999


Q ss_pred             eCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          162 DDHQSRCIGELSFRS-EVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       162 D~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      |+.+|+|...+..+. .|.++...+..+..+ .|.+|++|++.+++.++.+.+|..++..+.+.    +.+++ +|+.||
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----~~~lv-sgs~d~  351 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----EPLLV-SGSYDG  351 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec----CCEEE-EEecCc
Confidence            999999999998654 677777777666664 46799999999999999999877766655554    25565 699999


Q ss_pred             cEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEeCCCcceeEEEeecCceEEE
Q 020784          240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       240 ~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg-~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                      +|++|+..+.. ++++.+|...|.++.+... .++.+||.|++ ||+||++++ +|++++ .+|......+...+++|--
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl-~~h~~~v~~l~~~~~~Lvs  428 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTL-QGHTSLVSSLLLRDNFLVS  428 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhh-cCCcccccccccccceeEe
Confidence            99999998755 7899999999999988765 88999999999 999999999 999998 4666655566666666543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=3.7e-21  Score=171.14  Aligned_cols=223  Identities=10%  Similarity=0.121  Sum_probs=173.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ..++++...+....++||+.| .+.++|....+.+..... |...|..+.++++...++.++       .|..|+||..-
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aS-------ad~~i~vws~~  291 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITAS-------ADEIIRVWSVP  291 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecC-------CcceEEeeccc
Confidence            368888888877788999986 788999988877666653 444555556566555555555       67899999986


Q ss_pred             CCcEEEEE-eeCCceeEEEEeC--CeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          165 QSRCIGEL-SFRSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       165 ~~~~~~~~-~~~~~v~~v~~~~--~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      ........ .+...|+.+..|+  +.++.+. +++..+.|++++..+.........+...+..++|||.+++ .|..||.
T Consensus       292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg-tgt~d~~  370 (506)
T KOG0289|consen  292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG-TGTPDGV  370 (506)
T ss_pred             cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe-ccCCCce
Confidence            65543333 3456788888876  4565555 4699999999998887776544556677777788889998 5999999


Q ss_pred             EEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc--ceeEEEeecCceEEE
Q 020784          241 VRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI--SAQSGLWLSSAWLRV  317 (321)
Q Consensus       241 V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~--~~~~~~s~d~~~la~  317 (321)
                      |+|||+.... ...|.+|.++|..|+|+.||.+||++++|+. |++||++..+.++++.....  ...+.|-.+|+||+.
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence            9999998765 5589999999999999999999999999999 99999999999998864443  334477788899987


Q ss_pred             e
Q 020784          318 L  318 (321)
Q Consensus       318 ~  318 (321)
                      +
T Consensus       450 ~  450 (506)
T KOG0289|consen  450 A  450 (506)
T ss_pred             e
Confidence            5

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.89  E-value=8.3e-23  Score=183.72  Aligned_cols=196  Identities=15%  Similarity=0.203  Sum_probs=154.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+|..+|+.++|+++|+.|.+++-| .+++||++++++....+.  +....++.+.++...+.++|+      .|+.|+.
T Consensus       255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~------sd~ki~~  326 (503)
T KOG0282|consen  255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGG------SDKKIRQ  326 (503)
T ss_pred             hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEec------CCCcEEE
Confidence            5788899999999999999988865 588999999999877774  778899999998855656654      5799999


Q ss_pred             EeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEEC-CEEEEEEcCCcEEEE----------------------------
Q 020784          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLH----------------------------  208 (321)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~~-~~I~iwd~~~~~~~~----------------------------  208 (321)
                      ||+++++.++++..+ +.|..+.|-++  +++..++ +.++||+.+..-.++                            
T Consensus       327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d  406 (503)
T KOG0282|consen  327 WDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD  406 (503)
T ss_pred             EeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence            999999988877655 47778887543  4555544 699999886432221                            


Q ss_pred             ------------------EEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCC
Q 020784          209 ------------------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD  269 (321)
Q Consensus       209 ------------------~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspd  269 (321)
                                        .|++|......|.+.+.||+.+|+ +|+.||.+.+||+++.. +..+++|+..|..+.|+|-
T Consensus       407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~-SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC-SGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE-eecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence                              123333333456666667889998 69999999999998755 5689999999999999986


Q ss_pred             -CCEEEEEeCCCcEEEEEE
Q 020784          270 -GQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       270 -g~~las~S~Dgt~IrIWd  287 (321)
                       ...+|||++||. |+|||
T Consensus       486 e~Skvat~~w~G~-Ikiwd  503 (503)
T KOG0282|consen  486 EPSKVATCGWDGL-IKIWD  503 (503)
T ss_pred             CcceeEecccCce-eEecC
Confidence             468999999999 99996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=1.9e-21  Score=182.84  Aligned_cols=226  Identities=16%  Similarity=0.183  Sum_probs=179.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeee-------------------------------------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF-------------------------------------  124 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~-------------------------------------  124 (321)
                      .+|++.|++++|+.|...+++|+.+.++||+.++.+++...+.                                     
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et  449 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET  449 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence            5799999999999999999999999999999988776554432                                     


Q ss_pred             --ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC-----C---c-----EEEEEeeCCceeEEEEeCCe--
Q 020784          125 --ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-----S---R-----CIGELSFRSEVRSVKLRRDR--  187 (321)
Q Consensus       125 --~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~-----~---~-----~~~~~~~~~~v~~v~~~~~~--  187 (321)
                        .|++.+..++..+++..+++++       .|++|++||..-     +   +     ..+++++...|.++.++|+.  
T Consensus       450 i~AHdgaIWsi~~~pD~~g~vT~s-------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  450 IRAHDGAIWSISLSPDNKGFVTGS-------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhccccceeeeeecCCCCceEEec-------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence              0334444444444444444444       689999999531     1   1     11356677889999999875  


Q ss_pred             EEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEE
Q 020784          188 IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFA  265 (321)
Q Consensus       188 ~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~va  265 (321)
                      ++++ .+++|++|-+.+.+..-++-+|.-|+.++.++++.  .+++ +|+.|+.|+||-+..+.. +.+-+|+..|.+|.
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS--kliv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS--KLIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ  599 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc--CeEE-eccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence            3443 47899999999999999999999999999998865  7777 599999999999887764 58999999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce-eEEEeecCceEEEe
Q 020784          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA-QSGLWLSSAWLRVL  318 (321)
Q Consensus       266 fspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~-~~~~s~d~~~la~~  318 (321)
                      |-|+..+|.|||.|+. ||-||-...++++++...+... .++.+++|.|+..+
T Consensus       600 F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~  652 (888)
T KOG0306|consen  600 FLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS  652 (888)
T ss_pred             EcccceeEEEecCcce-EEeechhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence            9999999999999999 9999999999999996444333 45778999988654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.89  E-value=4.7e-21  Score=172.02  Aligned_cols=197  Identities=14%  Similarity=0.185  Sum_probs=160.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCce------------------------------eEEeee------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE------------------------------IFRRDF------  124 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~------------------------------~~~~~~------  124 (321)
                      ..|+++|.++.|+.+|+||++|+.|+ +.+||..++..                              ++....      
T Consensus       273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~  352 (524)
T KOG0273|consen  273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV  352 (524)
T ss_pred             hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcc
Confidence            56889999999999999999999865 67999733221                              111111      


Q ss_pred             ---e-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCC-----------eE
Q 020784          125 ---E-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD-----------RI  188 (321)
Q Consensus       125 ---~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~-----------~~  188 (321)
                         . |.+.|.+++|.+.+.+|++++       +|+|+|||.+....+...++.+ .+|+.+.|+|.           .+
T Consensus       353 ~t~~GH~g~V~alk~n~tg~LLaS~S-------dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l  425 (524)
T KOG0273|consen  353 KTFIGHHGEVNALKWNPTGSLLASCS-------DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML  425 (524)
T ss_pred             eeeecccCceEEEEECCCCceEEEec-------CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence               0 677889999988899999888       7899999999888887777655 48999998764           23


Q ss_pred             E-EEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEEC
Q 020784          189 I-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT  267 (321)
Q Consensus       189 ~-~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafs  267 (321)
                      + +..+++|++||+..+.++++|..|..++..++|+++  +.++| +|+.||.|.||+.++..+..-..-++.|..|+|+
T Consensus       426 ~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~--g~ylA-sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn  502 (524)
T KOG0273|consen  426 ASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN--GRYLA-SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWN  502 (524)
T ss_pred             EEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC--CcEEE-ecCCCCeeEeccccchheeEeecCCCeEEEEEEc
Confidence            3 345789999999999999999999888887777775  49999 6999999999999888766545566779999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcC
Q 020784          268 QDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       268 pdg~~las~S~Dgt~IrIWd~~  289 (321)
                      -+|.+|..+-.|+. +.+-|++
T Consensus       503 ~~G~kl~~~~sd~~-vcvldlr  523 (524)
T KOG0273|consen  503 AAGDKLGACASDGS-VCVLDLR  523 (524)
T ss_pred             CCCCEEEEEecCCC-ceEEEec
Confidence            99999998888999 9999876

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.89  E-value=5.5e-22  Score=175.40  Aligned_cols=223  Identities=16%  Similarity=0.231  Sum_probs=166.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      +..+.|+++.|.++++++++++. +.+++|+++..+....... |.+.|..+.+.-....  +++|+     .|.+||+|
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~~--vVsgs-----~DRtiK~W  288 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHSR--VVSGS-----ADRTIKLW  288 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhccccc--eeecc-----ccchhhhh
Confidence            44568999999999998776665 5589999999887766665 6777777766433322  44544     68999999


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeCCeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      |+++..|..++-..+.+..++.....++.. .+++||+||++...+.+.+..+. -+..+.++++  +.-+.. .+-|.+
T Consensus       289 Dl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~--g~~lLs-ssRDdt  364 (459)
T KOG0288|consen  289 DLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD--GLELLS-SSRDDT  364 (459)
T ss_pred             hhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccC--CeEEee-ecCCCc
Confidence            999999988877777777777764333443 46799999999999988888764 3445555554  454543 477889


Q ss_pred             EEEEeeCCcceE-Eeecc----ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc-eeEEEeec--C
Q 020784          241 VRVEHYASKRTK-FIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS-AQSGLWLS--S  312 (321)
Q Consensus       241 V~i~d~~~~~~~-~l~~H----~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~-~~~~~s~d--~  312 (321)
                      +.+.|..+..+. ++.+-    ...++.+.|||++.|+|+||.||. |+||++.+|++...++..+.. ++.+++|+  |
T Consensus       365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence            999998876644 44321    233899999999999999999999 999999999999998776665 55566554  5


Q ss_pred             ceEEEe
Q 020784          313 AWLRVL  318 (321)
Q Consensus       313 ~~la~~  318 (321)
                      .+|..|
T Consensus       444 ~~Llsa  449 (459)
T KOG0288|consen  444 SGLLSA  449 (459)
T ss_pred             chhhcc
Confidence            666543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.3e-20  Score=158.04  Aligned_cols=225  Identities=14%  Similarity=0.166  Sum_probs=182.4

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           81 SSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~d-g~~lasg~-~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .++|.+.|--++|+|. ..+|++++ ++.|++||....+.....+.  .++-..+.|+++++.++++.       .|..|
T Consensus        60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~--~~eni~i~wsp~g~~~~~~~-------kdD~i  130 (313)
T KOG1407|consen   60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET--KGENINITWSPDGEYIAVGN-------KDDRI  130 (313)
T ss_pred             ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec--cCcceEEEEcCCCCEEEEec-------CcccE
Confidence            3678888999999974 45676655 57899999999988777664  45555668899999998877       67889


Q ss_pred             EEEeCCCCcEEEEEeeCCceeEEEEeC--CeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          159 MIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      ...|.++.+.+.+.++...+..++|+.  +.+++..+ |.|.|-.....+.+++++.|.  ..++++..+|+|.++|+ |
T Consensus       131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~-G  207 (313)
T KOG1407|consen  131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFAT-G  207 (313)
T ss_pred             EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEee-c
Confidence            999999999998888888888888864  34444444 799999999999999999875  67889999999999995 9


Q ss_pred             CCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCce
Q 020784          236 LQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAW  314 (321)
Q Consensus       236 s~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~  314 (321)
                      +.|-.|-+||...- ++..+..|.=+|+.|.||.||++||+||+|.. |-|=+++||..+.+.........++.-+..-.
T Consensus       208 sADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~L  286 (313)
T KOG1407|consen  208 SADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIPCEGPTFTVAWHPKRPL  286 (313)
T ss_pred             cccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEeeccCCceeEEecCCCce
Confidence            99999999998753 46789999999999999999999999999998 99999999999998865444333343344444


Q ss_pred             EEEe
Q 020784          315 LRVL  318 (321)
Q Consensus       315 la~~  318 (321)
                      ||.|
T Consensus       287 LAyA  290 (313)
T KOG1407|consen  287 LAYA  290 (313)
T ss_pred             eeEE
Confidence            5554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-20  Score=159.03  Aligned_cols=198  Identities=16%  Similarity=0.207  Sum_probs=151.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecC--CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      +.-.|...|++|+|+|.|++||+|+-|. +.||.-..  ++++..++. |+..|.+++|+.++++||+++       .|+
T Consensus        56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCS-------RDK  127 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCS-------RDK  127 (312)
T ss_pred             ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEee-------CCC
Confidence            3446778999999999999999999866 66998754  345555555 788999999999999999999       789


Q ss_pred             cEEEEeCCCCc---EEEEEeeC-CceeEEEEeC--CeEEEEE-CCEEEEEEcC---CcEEEEEEeccCCCCceEEEeeCC
Q 020784          157 KVMIWDDHQSR---CIGELSFR-SEVRSVKLRR--DRIIVVL-EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       157 ~v~iWD~~~~~---~~~~~~~~-~~v~~v~~~~--~~~~~~~-~~~I~iwd~~---~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      .|-||....+.   +..-++.+ ..|..+.|||  +.++.++ |++||+|.-.   ..+++++|.+|.+.  +.++.+++
T Consensus       128 SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T--VW~~~F~~  205 (312)
T KOG0645|consen  128 SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT--VWSLAFDN  205 (312)
T ss_pred             eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce--EEEEEecC
Confidence            99999987543   55555544 4799999999  5566664 7899999875   56889999998764  45555555


Q ss_pred             CceEEEeecCCCCcEEEEeeCC-------c-------------------ceE------------------Eeecccccee
Q 020784          227 GSLVLVCPGLQKGQVRVEHYAS-------K-------------------RTK------------------FIMAHDSRIA  262 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~-------~-------------------~~~------------------~l~~H~~~V~  262 (321)
                      .|..|+ +++.|++|+||....       +                   .+.                  .-.+|...|+
T Consensus       206 ~G~rl~-s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN  284 (312)
T KOG0645|consen  206 IGSRLV-SCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN  284 (312)
T ss_pred             CCceEE-EecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence            556777 589999999987210       0                   000                  1135778899


Q ss_pred             EEEECCC-CCEEEEEeCCCcEEEEEEcC
Q 020784          263 CFALTQD-GQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       263 ~vafspd-g~~las~S~Dgt~IrIWd~~  289 (321)
                      +|.|+|. ..+|++||.||. |++|.+.
T Consensus       285 sV~w~p~~~~~L~s~~DDG~-v~~W~l~  311 (312)
T KOG0645|consen  285 SVQWNPKVSNRLASGGDDGI-VNFWELE  311 (312)
T ss_pred             eEEEcCCCCCceeecCCCce-EEEEEec
Confidence            9999995 678999999998 9999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.88  E-value=2.5e-23  Score=180.53  Aligned_cols=207  Identities=13%  Similarity=0.229  Sum_probs=158.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ..|+|+.+.  ...+++|.. ++|+|||..+..+...... |.|.|-++.+  +...+  ++|+     +|.+|+|||++
T Consensus       198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqy--d~rvi--isGS-----SDsTvrvWDv~  265 (499)
T KOG0281|consen  198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQY--DERVI--VSGS-----SDSTVRVWDVN  265 (499)
T ss_pred             CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeec--cceEE--EecC-----CCceEEEEecc
Confidence            379999875  456788886 6799999998877666554 6666666554  44433  3433     68999999999


Q ss_pred             CCcEEEEEeeC-CceeEEEEeCCeEEEEEC-CEEEEEEcCCc---EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          165 QSRCIGELSFR-SEVRSVKLRRDRIIVVLE-QKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~---~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      +|+++.++-++ ..|..+.|+...++.++. .+|++||+...   .+.+.+.+|...+.++.|..    .+++ +++.|.
T Consensus       266 tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----kyIV-sASgDR  340 (499)
T KOG0281|consen  266 TGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIV-SASGDR  340 (499)
T ss_pred             CCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----ceEE-EecCCc
Confidence            99999887655 579999999998888874 59999999643   33445667777666666543    5776 689999


Q ss_pred             cEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCc
Q 020784          240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSA  313 (321)
Q Consensus       240 ~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~  313 (321)
                      +|++|+..+.. +.++.+|+..|-|+-+  .|+++++||.|.+ ||+||+..|+|++-+ .||...+.++-||.+
T Consensus       341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvL-eGHEeLvRciRFd~k  411 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVL-EGHEELVRCIRFDNK  411 (499)
T ss_pred             eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHH-hchHHhhhheeecCc
Confidence            99999998765 6699999999999877  5899999999999 999999999998877 577655444444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.88  E-value=8.8e-22  Score=171.44  Aligned_cols=175  Identities=15%  Similarity=0.164  Sum_probs=145.6

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEc
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNF  201 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~  201 (321)
                      |.+.|.++++.+....+++.+       .|++++|||+.+|++..++..+ ..|..|.+++..  ++.+. +++|+.||+
T Consensus       150 HlgWVr~vavdP~n~wf~tgs-------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             ccceEEEEeeCCCceeEEecC-------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            788999999988866666655       6899999999999999888854 578899998653  44454 579999999


Q ss_pred             CCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCC
Q 020784          202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (321)
Q Consensus       202 ~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dg  280 (321)
                      ...+.++.+.+|...+.++++.|.-  ..|+ +|+.|.+++|||+.++. +.++.+|+.+|.+|.+.|-...++|||.|+
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTl--dvl~-t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTL--DVLV-TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccc--eeEE-ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            9999999999998877777777654  5566 59999999999999876 779999999999999999888899999999


Q ss_pred             cEEEEEEcCCCcEEEEEeCCCcceeEEEeecC
Q 020784          281 TLVRIFNTLDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       281 t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                      + ||+||++.|+-..++ ..|.....++...+
T Consensus       300 t-vrlWDl~agkt~~tl-t~hkksvral~lhP  329 (460)
T KOG0285|consen  300 T-VRLWDLRAGKTMITL-THHKKSVRALCLHP  329 (460)
T ss_pred             e-EEEeeeccCceeEee-ecccceeeEEecCC
Confidence            9 999999999988887 35665555555444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.8e-22  Score=188.19  Aligned_cols=215  Identities=15%  Similarity=0.183  Sum_probs=171.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      .++|..++|+|..-++.++-..| |++||..=+..+....- |+|+|+.+++++...+++.++       +|.+||||+.
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qplFVSGG-------DDykIkVWnY   80 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGG-------DDYKIKVWNY   80 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCCeEEecC-------CccEEEEEec
Confidence            35899999999999999999866 66999765554444433 799999999999888765544       6799999999


Q ss_pred             CCCcEEEEEeeC-CceeEEEEeCCe--EEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          164 HQSRCIGELSFR-SEVRSVKLRRDR--IIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       164 ~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      ++.+|+.++..| ..|..+.||+..  ++.++| .+|||||..+.+++..+.+|.+.+.+..|++.  ..+++ |+|-|.
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt--EDlIV-SaSLDQ  157 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT--EDLIV-SASLDQ  157 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc--cceEE-Eecccc
Confidence            999999888766 479999999875  555665 59999999999999999999876555555553  35666 799999


Q ss_pred             cEEEEeeCC----------------------------cc-e-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          240 QVRVEHYAS----------------------------KR-T-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       240 ~V~i~d~~~----------------------------~~-~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      +|||||...                            .. + .++.||++.|+-++|+|.-.+++||++|+- ||+|.+.
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrmn  236 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMN  236 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEec
Confidence            999999641                            01 1 267899999999999999999999999988 9999998


Q ss_pred             CCcEE--EEEeCCCcceeEEEeecC
Q 020784          290 DGTLL--QEECCPSISAQSGLWLSS  312 (321)
Q Consensus       290 tg~~i--~~~~~g~~~~~~~~s~d~  312 (321)
                      .-+..  .++ +||.+...++-|.+
T Consensus       237 etKaWEvDtc-rgH~nnVssvlfhp  260 (1202)
T KOG0292|consen  237 ETKAWEVDTC-RGHYNNVSSVLFHP  260 (1202)
T ss_pred             cccceeehhh-hcccCCcceEEecC
Confidence            76643  344 67777666666655

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.88  E-value=2.2e-20  Score=169.70  Aligned_cols=224  Identities=17%  Similarity=0.165  Sum_probs=177.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee--cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      +.|..-|+|++|+|||.+||+.+. +.+.|||=.+++.+...+-.  |.+.|..+.|+|++..+++++       .|+++
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-------aDkt~  259 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-------ADKTI  259 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-------CCceE
Confidence            567779999999999999997766 55889999998887766621  789999999999999999999       67999


Q ss_pred             EEEeCCCCcEEEEEeeCCce----eEEEEeCCeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          159 MIWDDHQSRCIGELSFRSEV----RSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v----~~v~~~~~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      ||||+.+.+++.++.....|    ..+-|..+.++.. .++.|.+++......++.+.+|...+.++.++++  +.+|. 
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d--~~~i~-  336 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD--GKTIY-  336 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--CCEEE-
Confidence            99999999999998876543    3344566666555 5789999999999999999999887766666664  46776 


Q ss_pred             ecCCCCcEEEEeeCCcceEEe--eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEE--EeCCCcceeEEEe
Q 020784          234 PGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE--ECCPSISAQSGLW  309 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l--~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~--~~~g~~~~~~~~s  309 (321)
                      +|+.||.|.-|+...+..-.+  +.|...|.+++-+..+. +.|+|+|.+ +|+.++..+..-..  ++.+++...++..
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~-l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDT-LRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEecCCe-EEEEecccCcccccceeecCCCceeEEEc
Confidence            799999999999887665544  78999999999987776 568889999 99999865433222  3567777777766


Q ss_pred             ecCceEEE
Q 020784          310 LSSAWLRV  317 (321)
Q Consensus       310 ~d~~~la~  317 (321)
                      .++.++.+
T Consensus       415 ~d~~~avv  422 (603)
T KOG0318|consen  415 SDGGTAVV  422 (603)
T ss_pred             CCCCEEEE
Confidence            66655444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=1.7e-21  Score=182.99  Aligned_cols=199  Identities=12%  Similarity=0.184  Sum_probs=164.2

Q ss_pred             cCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCcee---EEee-----eecCCceEEEEEecCCCeEEEEeCCCC
Q 020784           81 SSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREI---FRRD-----FERGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~~---~~~~-----~~~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      ..+|.+.|.+|+++-.| .+|++++.|. +++|++...+..   ....     ..|+..|++|++.++..++|+++    
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S----  482 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS----  482 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc----
Confidence            36788999999998766 5888888755 889998652210   1110     01899999999999999999988    


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                         .|++.|||++........+..|. .|.+|.|.+.  .++.++ |.+|+||.+.++.++++|.+|...+.-+.|-.++
T Consensus       483 ---qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~  559 (775)
T KOG0319|consen  483 ---QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG  559 (775)
T ss_pred             ---cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence               88999999999888888888775 7999999986  444444 4699999999999999999998887777776654


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                        ..|+ |++.||.+++|+.+++. +.++.+|+..|++++-++++.+++||+.||. |.+|.=-|
T Consensus       560 --~qli-S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-i~~wkD~T  620 (775)
T KOG0319|consen  560 --KQLI-SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-IIFWKDVT  620 (775)
T ss_pred             --cEEE-eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-EEEeecCc
Confidence              5565 68999999999998765 7899999999999999999999999999999 88995443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=3.7e-21  Score=183.27  Aligned_cols=224  Identities=16%  Similarity=0.179  Sum_probs=156.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecC----------------------------Cce--eEE---------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP----------------------------FRE--IFR---------  121 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~----------------------------~~~--~~~---------  121 (321)
                      ..|.+.|.++.||+||+|||+|+.|+ ||||.+..                            ...  +..         
T Consensus       264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            47889999999999999999999988 56997643                            000  000         


Q ss_pred             -------------------eeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEE
Q 020784          122 -------------------RDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSV  181 (321)
Q Consensus       122 -------------------~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v  181 (321)
                                         .++. |.+.|-.+.|+.+ +.|+.++       .|+|||+|++...+|+..|.|..-|+||
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSS-------MDKTVRLWh~~~~~CL~~F~HndfVTcV  415 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSS-------MDKTVRLWHPGRKECLKVFSHNDFVTCV  415 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccC-CeeEecc-------ccccEEeecCCCcceeeEEecCCeeEEE
Confidence                               0000 3344444444332 2344444       7999999999999999999999999999


Q ss_pred             EEeCC---eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE---Ee
Q 020784          182 KLRRD---RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FI  254 (321)
Q Consensus       182 ~~~~~---~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~---~l  254 (321)
                      +|+|.   .++.+ .|++||||++...+.+.-.+.+ ..+..+++.  |||+..++ |+.+|.+++|+...-++.   .+
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~--PdGk~avI-Gt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS--PDGKGAVI-GTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEec--cCCceEEE-EEeccEEEEEEccCCeEEEeeeE
Confidence            99983   34443 5789999999887766554444 333444454  45677665 999999999987654433   11


Q ss_pred             e-------ccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCcEEEEEeCC---CcceeEEEeecCceEEEee
Q 020784          255 M-------AHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEECCP---SISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       255 ~-------~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg~~i~~~~~g---~~~~~~~~s~d~~~la~~~  319 (321)
                      .       .|. .|+.+-|.|... .++..|.|.. |||+|.++-+++..|+.-   +.....+|+.||+||..++
T Consensus       492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS  565 (712)
T ss_pred             eeccCccccCc-eeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence            1       233 799999986533 3555667988 999999988888877522   2223348888999987654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-19  Score=149.84  Aligned_cols=206  Identities=14%  Similarity=0.171  Sum_probs=157.2

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEE--EecCC---ceeEEeeeecCCceEEEEEecC----CCeEEEE
Q 020784           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIY--NCDPF---REIFRRDFERGGGIGVVEMLFR----CNILALV  145 (321)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw--~~~~~---~~~~~~~~~~~~~v~~v~~~~~----~~~~~~~  145 (321)
                      +.......|++.|+|++|+|+|++||+|++ +.|++.  |.++.   +......+ |++.|..+++.-+    +.+++.+
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~  158 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASA  158 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEec
Confidence            334445678899999999999999999998 457655  33332   22223344 7899999888643    2344444


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEE-EeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCC-----C
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVK-LRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP-----K  217 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~-~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~-----~  217 (321)
                      +.|      |-+|.+-|..+|+....+..+ +.|.++. |+.-.++.++ +++||+||++-..++.++......     .
T Consensus       159 gag------dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless  232 (350)
T KOG0641|consen  159 GAG------DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS  232 (350)
T ss_pred             CCC------cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence            443      456888899999877777655 5788865 5655555554 469999999988888888653322     3


Q ss_pred             ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      .+.+++.+|.+.+|+ +|..|....++|+..+. +..+..|...|+||.|||...||.|||.|.. ||+=|++-
T Consensus       233 avaav~vdpsgrll~-sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqg  304 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLA-SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQG  304 (350)
T ss_pred             eeEEEEECCCcceee-eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeeccc
Confidence            456778888889999 69999999999998765 6689999999999999999999999999999 99999873

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=5e-21  Score=164.08  Aligned_cols=209  Identities=16%  Similarity=0.244  Sum_probs=158.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCC------------c----eeEEeee-ecCCceEEEEEecCCCeEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------------R----EIFRRDF-ERGGGIGVVEMLFRCNILA  143 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~------------~----~~~~~~~-~~~~~v~~v~~~~~~~~~~  143 (321)
                      ..|.+++++.+|++||.++|+|+.|. |+|.|++.+            +    .-..+.+ +|...|..+++++...+++
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence            56888999999999999999999866 889998621            0    0111222 2677888989888777776


Q ss_pred             EEeCCCCCCCCCCcEEEEeCCCCcE---EEEEeeCCceeEEEEeCC--eEEEEECC-EEEEEEcCCcEEEEEEec-cCCC
Q 020784          144 LVGGGPDPQYPLNKVMIWDDHQSRC---IGELSFRSEVRSVKLRRD--RIIVVLEQ-KIFVYNFADLKLLHQIET-IANP  216 (321)
Q Consensus       144 ~~sg~~~~~~~d~~v~iWD~~~~~~---~~~~~~~~~v~~v~~~~~--~~~~~~~~-~I~iwd~~~~~~~~~l~~-~~~~  216 (321)
                      ..+       .|++||++|..+...   ...|+....|.++.|||.  +++++++. .+|+||+.+.++...-.. ....
T Consensus       189 S~s-------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  189 SGS-------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             ecc-------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            655       789999999876433   233444568999999974  57777774 999999999887654321 1223


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeCC-cceEEe-ecccc-ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI-MAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~-~~~~~l-~~H~~-~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      ..++.+..++.+.+.+ +|+.||.|+|||--. +++.++ ++|.+ .|.+..|..||+|+.|.+.|.+ |++|.+.+|.+
T Consensus       262 ~ai~~V~Ys~t~~lYv-TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~  339 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYV-TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRM  339 (430)
T ss_pred             cceeEEEecCCccEEE-EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCce
Confidence            3466666666778777 599999999999544 455555 46754 6999999999999999999999 99999999999


Q ss_pred             EEEEeC
Q 020784          294 LQEECC  299 (321)
Q Consensus       294 i~~~~~  299 (321)
                      +.+|..
T Consensus       340 l~~YtG  345 (430)
T KOG0640|consen  340 LKEYTG  345 (430)
T ss_pred             EEEEec
Confidence            999853

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.8e-21  Score=162.65  Aligned_cols=227  Identities=15%  Similarity=0.146  Sum_probs=162.9

Q ss_pred             cccCCCCCCeEEEEEcCCC--CEEEEEcCCcEEEEEecCC-ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           79 STSSSPPPTLLHISFNQDH--GCFAAGTDHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg--~~lasg~~~gv~vw~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ..+..-...+..|+|+++-  ..+++.+|+.++|||+... +.+...+- |...|..+.+....+...+.+ +     -|
T Consensus        54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~lts-S-----WD  126 (311)
T KOG0277|consen   54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTS-S-----WD  126 (311)
T ss_pred             EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEee-c-----cC
Confidence            3344555689999999864  4455556667999995332 22222221 677888888876544444444 2     57


Q ss_pred             CcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCC---eEEEE-ECCEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCce
Q 020784          156 NKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD---RIIVV-LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~---~~~~~-~~~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      ++||+||...++-+.++..+. -|+...|++.   .++.+ +++++++||++. ++.+ .|..|...+.+|.++.- +..
T Consensus       127 ~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky-~~~  204 (311)
T KOG0277|consen  127 GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKY-NHN  204 (311)
T ss_pred             CceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeeccccc-CCc
Confidence            999999999999999988765 6899999874   45555 457999999965 4444 48888877888888764 446


Q ss_pred             EEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCc-EEEEEeCCCccee
Q 020784          230 VLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT-LLQEECCPSISAQ  305 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~-~i~~~~~g~~~~~  305 (321)
                      +++ +|+.|+.|++||+..-  ++.++.+|.-+|+.|+|||. ..+|||+|.|-| +||||...+. ++.+++ -|....
T Consensus       205 vl~-Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~-~HtEFv  281 (311)
T KOG0277|consen  205 VLA-TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVD-HHTEFV  281 (311)
T ss_pred             EEE-ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhh-ccceEE
Confidence            666 6999999999998753  46789999999999999987 568999999999 9999998654 444443 344443


Q ss_pred             EEE--e-ecCceEEE
Q 020784          306 SGL--W-LSSAWLRV  317 (321)
Q Consensus       306 ~~~--s-~d~~~la~  317 (321)
                      ..+  + +++.|+|-
T Consensus       282 ~g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  282 CGLDWSLFDPGQVAS  296 (311)
T ss_pred             eccccccccCceeee
Confidence            322  2 45666654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.4e-20  Score=160.44  Aligned_cols=207  Identities=14%  Similarity=0.147  Sum_probs=158.2

Q ss_pred             CCcccCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCc------------eeEEeeee--cCCceEEEEEecCCC
Q 020784           77 AESTSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFR------------EIFRRDFE--RGGGIGVVEMLFRCN  140 (321)
Q Consensus        77 ~~~~~~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~------------~~~~~~~~--~~~~v~~v~~~~~~~  140 (321)
                      ...+.+.|++.|+++.+.+ .|+|+++|+.+| +.|||++...            ++..+.+.  |.-.|..+.|-|...
T Consensus        35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            3445578889999999998 689999999887 5599986532            11111111  455677777877666


Q ss_pred             eEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC-----eEEEEECC-EEEEEEcCCcEEEEEEeccC
Q 020784          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-----RIIVVLEQ-KIFVYNFADLKLLHQIETIA  214 (321)
Q Consensus       141 ~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~~~~-~I~iwd~~~~~~~~~l~~~~  214 (321)
                      .+.+.+      +-|+++||||.++-+....|++++.|++-++++-     .+++++.+ +|++-|+..|..-+++.+|.
T Consensus       115 GmFtss------SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr  188 (397)
T KOG4283|consen  115 GMFTSS------SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR  188 (397)
T ss_pred             ceeecc------cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence            565544      1589999999999999999999999988777652     23444554 99999999999999999998


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEE--------------eeccccceeEEEECCCCCEEEEEeC
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKF--------------IMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~--------------l~~H~~~V~~vafspdg~~las~S~  278 (321)
                      +.+..+.+++.  ..++.++|+.||.|++||+..  ++..+              -.+|.+.|+.+||+.+|.++++++.
T Consensus       189 ~~vlaV~Wsp~--~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  189 DGVLAVEWSPS--SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             CceEEEEeccC--ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            77666666554  456666899999999999752  22222              3467788999999999999999999


Q ss_pred             CCcEEEEEEcCCCc
Q 020784          279 KGTLVRIFNTLDGT  292 (321)
Q Consensus       279 Dgt~IrIWd~~tg~  292 (321)
                      |.. +|+|+..+|+
T Consensus       267 d~r-~r~wn~~~G~  279 (397)
T KOG4283|consen  267 DDR-IRVWNMESGR  279 (397)
T ss_pred             ccc-eEEeecccCc
Confidence            999 9999999875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.9e-19  Score=152.89  Aligned_cols=222  Identities=10%  Similarity=0.153  Sum_probs=148.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+|+++.|+.+|.+|+++++ |.++|||+..++....... ++.++..+++....+.+..++-.     .|.+||.-++
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLsl   87 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLSL   87 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCC-----CCCceEEEEe
Confidence            458999999999999998776 6899999999887766654 34577788887777766665532     3678888888


Q ss_pred             CCCcEEEEEeeCC-ceeEEEEeCC--eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          164 HQSRCIGELSFRS-EVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       164 ~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      .+.+.++-|.+|. .|.+++.+|.  .++.+ .|++||+||++..++..-+....  ..++++  +|+|.++|+ |...+
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~Af--Dp~GLifA~-~~~~~  162 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAF--DPEGLIFAL-ANGSE  162 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeE--CCCCcEEEE-ecCCC
Confidence            8888888777665 6777777763  33333 45688888887555544433322  123333  334455553 44444


Q ss_pred             cEEEEeeC-----------------------------------------------Ccc-eEEeeccccc---eeEEEECC
Q 020784          240 QVRVEHYA-----------------------------------------------SKR-TKFIMAHDSR---IACFALTQ  268 (321)
Q Consensus       240 ~V~i~d~~-----------------------------------------------~~~-~~~l~~H~~~---V~~vafsp  268 (321)
                      .|+++|++                                               .+. ..++.+|...   --+.+|+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            56665532                                               112 2234444332   25788999


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      ||+++.+|+.||+ |.||++++|+.+..++.-+.....++-++++|...+
T Consensus       243 ds~Fvl~gs~dg~-i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~  291 (311)
T KOG1446|consen  243 DSKFVLSGSDDGT-IHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV  291 (311)
T ss_pred             CCcEEEEecCCCc-EEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence            9999999999999 999999999999988543333334444777665444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.87  E-value=1.7e-21  Score=167.88  Aligned_cols=225  Identities=14%  Similarity=0.209  Sum_probs=176.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEE-EEEecCCceeEEeeee-------cCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREIFRRDFE-------RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~-vw~~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      .+..+-+.|..|+|||+||++|+.||+. |||..+++......++       ++..|.++.++-++..+++.+       
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs-------  282 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS-------  282 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC-------
Confidence            3455678999999999999999999965 9999888754333221       567888888888888777666       


Q ss_pred             CCCcEEEEeCCCCcEEEEEe--eCCceeEEEEeCCe--EEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCc
Q 020784          154 PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDR--IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                      .||+||||.+++|+|++.|+  +...|+++.|+++.  ++.+ .|.++|+--+..|++++.|.+|...+.-..|..++  
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG--  360 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG--  360 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC--
Confidence            78999999999999999886  44579999999864  3333 46799999999999999999998877766766644  


Q ss_pred             eEEEeecCCCCcEEEEeeCCcc-eEEeec--cccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc-
Q 020784          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMA--HDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS-  303 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~-~~~l~~--H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~-  303 (321)
                      ..++ +++.||+|++|+..+.. +.+|+.  -+-+|++|-.-|. ...++.|-..++ |.|-++. |+.+++|..|... 
T Consensus       361 ~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~q-GQvVrsfsSGkREg  437 (508)
T KOG0275|consen  361 HHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNMQ-GQVVRSFSSGKREG  437 (508)
T ss_pred             CeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEecc-ceEEeeeccCCccC
Confidence            5665 58999999999987654 667764  4567999988875 467888988888 9898875 8889998765442 


Q ss_pred             --e-eEEEeecCceEEEe
Q 020784          304 --A-QSGLWLSSAWLRVL  318 (321)
Q Consensus       304 --~-~~~~s~d~~~la~~  318 (321)
                        . ...+|+-|.|+.++
T Consensus       438 GdFi~~~lSpkGewiYci  455 (508)
T KOG0275|consen  438 GDFINAILSPKGEWIYCI  455 (508)
T ss_pred             CceEEEEecCCCcEEEEE
Confidence              2 23778999998653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=2.2e-20  Score=169.35  Aligned_cols=225  Identities=12%  Similarity=0.184  Sum_probs=158.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEE--eeee--cCCceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFR--RDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~--~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      ..|...|.++++.|.|-.|++|+-| .|++||+.-+.-...  +.+.  ..+.|..+.++..++.+++++|.       .
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~-------a  236 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS-------A  236 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-------c
Confidence            3455689999999999999999974 589999864321111  1111  46789999999999999888865       6


Q ss_pred             cEEEEeCCCCcEEEEEeeC-------------CceeEEEEeCC---eEE-EEECCEEEEEEcCC-cEEEEEEecc-----
Q 020784          157 KVMIWDDHQSRCIGELSFR-------------SEVRSVKLRRD---RII-VVLEQKIFVYNFAD-LKLLHQIETI-----  213 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~-------------~~v~~v~~~~~---~~~-~~~~~~I~iwd~~~-~~~~~~l~~~-----  213 (321)
                      ..+|+|-...+.+..++..             ..+++.+||++   .++ ++.|+++||||+.+ .+.++.|+..     
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            7999997655554443321             25778889975   233 44568999999964 3334444432     


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc----eEEeecccc--ceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~----~~~l~~H~~--~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      .-+...|++++  |+.++|. |..||.|.+|+.....    .+.-++|..  .|+||+||+||++|+|-|.|++ +|+||
T Consensus       317 Rv~~tsC~~nr--dg~~iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWD  392 (641)
T KOG0772|consen  317 RVPVTSCAWNR--DGKLIAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWD  392 (641)
T ss_pred             ccCceeeecCC--Ccchhhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeee
Confidence            12334566555  5688884 9999999999975432    346678988  8999999999999999999999 99999


Q ss_pred             cCCCc-EEEEEeCCCc----ceeEEEeecCceEEEe
Q 020784          288 TLDGT-LLQEECCPSI----SAQSGLWLSSAWLRVL  318 (321)
Q Consensus       288 ~~tg~-~i~~~~~g~~----~~~~~~s~d~~~la~~  318 (321)
                      ++..+ ++... .|-.    ....+||+|-+.|..-
T Consensus       393 Lrq~kkpL~~~-tgL~t~~~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  393 LRQFKKPLNVR-TGLPTPFPGTDCCFSPDDKLILTG  427 (641)
T ss_pred             ccccccchhhh-cCCCccCCCCccccCCCceEEEec
Confidence            99754 44433 2211    2234788888877653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=6.1e-20  Score=164.48  Aligned_cols=222  Identities=17%  Similarity=0.209  Sum_probs=167.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .|...|.+++.++||+|||+|+.+. |.||++++.+.+..... |.+.|..+++-..++.+..++       .|++|++|
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s-------~Drsvkvw  271 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSAS-------ADRSVKVW  271 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCccceeeee-------cCCceEEE
Confidence            6778999999999999999999865 66999999987766554 678888888887788888777       78999999


Q ss_pred             eCCCCcEEEEEe-eCCceeEEEEeC-CeEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          162 DDHQSRCIGELS-FRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       162 D~~~~~~~~~~~-~~~~v~~v~~~~-~~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +++....+.++- ++..|.++.... .+.+.+.  |.++++|++.... .-.+.++....-+++|-.+   .-++ +|+.
T Consensus       272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~---~Hfv-sGSd  346 (479)
T KOG0299|consen  272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND---EHFV-SGSD  346 (479)
T ss_pred             ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc---ccee-eccC
Confidence            998887776654 445788887544 4444443  5799999995332 2345555555556666543   2344 5999


Q ss_pred             CCcEEEEeeCCcc-eEEe-ecc-----------ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----cEEEEEeCC
Q 020784          238 KGQVRVEHYASKR-TKFI-MAH-----------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEECCP  300 (321)
Q Consensus       238 dg~V~i~d~~~~~-~~~l-~~H-----------~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg----~~i~~~~~g  300 (321)
                      ||.|.+|++..+. +.+. .+|           ...|++|+..|...+|||||.+|. ||+|-+.+|    .++..+...
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls~~  425 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLSLV  425 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecccc
Confidence            9999999987654 4432 233           237999999999999999999999 999999988    466666654


Q ss_pred             CcceeEEEeecCceEEEe
Q 020784          301 SISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       301 ~~~~~~~~s~d~~~la~~  318 (321)
                      .-...++|+.||++|-++
T Consensus       426 GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  426 GFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             cEEEEEEEccCCCEEEEe
Confidence            555566889999977553

>PTZ00421 coronin; Provisional

Probab=99.85  E-value=6.6e-19  Score=167.95  Aligned_cols=220  Identities=12%  Similarity=-0.020  Sum_probs=152.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcE-EEEEecCCceeE-------------EeeeecCCceEEEEEec-CCCeEEEEeCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGF-RIYNCDPFREIF-------------RRDFERGGGIGVVEMLF-RCNILALVGGGPDP  151 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv-~vw~~~~~~~~~-------------~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~  151 (321)
                      .|+...+++|+..+++++.+.+ ..|+..-+..+.             .... |.+.|..++|++ +++.+++++     
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~~LaSgS-----   95 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQKLFTAS-----   95 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCCEEEEEe-----
Confidence            4666667777655555555443 366543221111             1111 678899999987 777787777     


Q ss_pred             CCCCCcEEEEeCCCCc-------EEEEEeeC-CceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCce
Q 020784          152 QYPLNKVMIWDDHQSR-------CIGELSFR-SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~-------~~~~~~~~-~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                        .|++|+|||+.++.       .+..+..+ ..|.+++|++.   .++.++ |++|+|||+.+++.+..+..|...+..
T Consensus        96 --~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s  173 (493)
T PTZ00421         96 --EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS  173 (493)
T ss_pred             --CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence              68999999997653       34445544 57999999974   345444 579999999999999999888776666


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccc-eeEEEECCCCCEEEEEe----CCCcEEEEEEcCCCc-
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR-IACFALTQDGQLLATSS----TKGTLVRIFNTLDGT-  292 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~-V~~vafspdg~~las~S----~Dgt~IrIWd~~tg~-  292 (321)
                      +++++  ++.+|+ +|+.||+|+|||..++. +.++.+|.+. +..+.|.+++.+|++++    .|++ |+|||+++.. 
T Consensus       174 la~sp--dG~lLa-tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~~  249 (493)
T PTZ00421        174 LEWNL--DGSLLC-TTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMAS  249 (493)
T ss_pred             EEEEC--CCCEEE-EecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCCC
Confidence            66665  557787 59999999999998765 5678889865 45778999887777754    4788 9999999764 


Q ss_pred             EEEEEeCCCccee--EEEeecCceEEEe
Q 020784          293 LLQEECCPSISAQ--SGLWLSSAWLRVL  318 (321)
Q Consensus       293 ~i~~~~~g~~~~~--~~~s~d~~~la~~  318 (321)
                      .+...........  ..+++|+.+|+++
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~~L~lg  277 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTNLLYIG  277 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCCEEEEE
Confidence            4443332222222  2566788887765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.6e-19  Score=155.11  Aligned_cols=211  Identities=18%  Similarity=0.236  Sum_probs=165.3

Q ss_pred             CCCCCCeEEEEEcCCCC--EEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~--~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..|.+.|+++.|.++-.  +|.+|++|| |.+|+...-..+..... |.+.|..++++|.+.+-..++       .|+.+
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~lsiHPS~KLALsVg-------~D~~l  151 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLSIHPSGKLALSVG-------GDQVL  151 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-cccccceeEecCCCceEEEEc-------CCcee
Confidence            35678999999999875  889999877 77999988876655554 788899999999887666666       47999


Q ss_pred             EEEeCCCCcEEEEEeeCCceeEEEEeC--CeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          159 MIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      +.||+-+|+.-..+........|.|.+  +++++...+.|-+|.+.+..+...+..   +....++-+. ++..+++ |.
T Consensus       152 r~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~v-G~  226 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLV-GG  226 (362)
T ss_pred             eeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEE-ec
Confidence            999999998776677666666688876  468888889999999988776655543   2334444443 3345553 89


Q ss_pred             CCCcEEEEeeCC-cceEEeeccccceeEEEE--CCCCCEEEEEeCCCcEEEEEEcCCC-----cEEEEEeCCCcceeE
Q 020784          237 QKGQVRVEHYAS-KRTKFIMAHDSRIACFAL--TQDGQLLATSSTKGTLVRIFNTLDG-----TLLQEECCPSISAQS  306 (321)
Q Consensus       237 ~dg~V~i~d~~~-~~~~~l~~H~~~V~~vaf--spdg~~las~S~Dgt~IrIWd~~tg-----~~i~~~~~g~~~~~~  306 (321)
                      .|+.|.+||... .++..+.+|...|-.+.+  .|++.+|+|+|.||. |+|||++..     +++..++.+.....+
T Consensus       227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~-I~vWd~~~~~k~~~~~l~e~n~~~RltCl  303 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF-IKVWDIDMETKKRPTLLAELNTNVRLTCL  303 (362)
T ss_pred             CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce-EEEEEccccccCCcceeEEeecCCcccee
Confidence            999999999874 457899999999999995  478999999999999 999999876     567777766554444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=1.6e-19  Score=176.14  Aligned_cols=230  Identities=14%  Similarity=0.115  Sum_probs=171.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEEecC------C----c--------eeEEeeeecCCceEEEEEecCCCe
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHGF-RIYNCDP------F----R--------EIFRRDFERGGGIGVVEMLFRCNI  141 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~gv-~vw~~~~------~----~--------~~~~~~~~~~~~v~~v~~~~~~~~  141 (321)
                      -..|.+.|+|+.|++||++||+|+||.+ .||+...      +    +        ....... |...|..++|++++.+
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccE
Confidence            4567889999999999999999999885 4998762      1    0        1112222 7889999999999999


Q ss_pred             EEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCeEEEE--EC-CEEEEEEcCCcEEEEEEeccCC--
Q 020784          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV--LE-QKIFVYNFADLKLLHQIETIAN--  215 (321)
Q Consensus       142 ~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~--~~-~~I~iwd~~~~~~~~~l~~~~~--  215 (321)
                      ++.++       .|++|.|||.++++.+..+..| +.|..+.|.|-+-+.+  ++ ++|+||++.+..+.+.+..+..  
T Consensus       144 lvS~s-------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  144 LVSVS-------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             EEEec-------ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            98888       7899999999999888888765 5799999998544443  43 5999999998888888876543  


Q ss_pred             --CCceEEEeeCCCceEEEeecCCCC---cEEEEeeCCcc-eEEeeccccceeEEEECCC-----CC------------E
Q 020784          216 --PKGLCAVSQGVGSLVLVCPGLQKG---QVRVEHYASKR-TKFIMAHDSRIACFALTQD-----GQ------------L  272 (321)
Q Consensus       216 --~~~~~~~s~~~d~~~la~sGs~dg---~V~i~d~~~~~-~~~l~~H~~~V~~vafspd-----g~------------~  272 (321)
                        ......+++.|||.+|++.-..+|   .+.|.+..+-. -+.|-||..+|.+++|+|.     ..            .
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i  296 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI  296 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence              223566788888899986433333   56665555433 5689999999999999983     12            6


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEeC--CCcceeEEEeecCceEEEee
Q 020784          273 LATSSTKGTLVRIFNTLDGTLLQEECC--PSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       273 las~S~Dgt~IrIWd~~tg~~i~~~~~--g~~~~~~~~s~d~~~la~~~  319 (321)
                      +|+||.|++ |-||.....+.+--...  ......++.++||.-|-+|+
T Consensus       297 ~AvgSqDrS-lSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS  344 (942)
T KOG0973|consen  297 AAVGSQDRS-LSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS  344 (942)
T ss_pred             EEEecCCcc-EEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence            899999999 99999987765433222  33333446777787776664

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=9.7e-21  Score=165.20  Aligned_cols=222  Identities=12%  Similarity=0.075  Sum_probs=165.5

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .+|...|.|++=+|.. ..+|+|+.|| |+|||+....+...... |.|-|..+++..  ..+++++       +|++||
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~--~~~~tvg-------dDKtvK  132 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ--TSFFTVG-------DDKTVK  132 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc--cceEEec-------CCccee
Confidence            6899999999999987 6789999877 78999998877666665 788899888876  5566677       689999


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      .|..+- ..+.++...+.+..+..+...-..++ +..|.|||.+....++++..+...+.++.+++.. -.+|+ ++..|
T Consensus       133 ~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE-TsILa-s~~sD  209 (433)
T KOG0268|consen  133 QWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE-TSILA-SCASD  209 (433)
T ss_pred             eeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc-chhee-eeccC
Confidence            998765 46667777778888887765444444 4599999998878888887665555555555543 23444 45566


Q ss_pred             CcEEEEeeCC-------------------------------------------cceEEeeccccceeEEEECCCCCEEEE
Q 020784          239 GQVRVEHYAS-------------------------------------------KRTKFIMAHDSRIACFALTQDGQLLAT  275 (321)
Q Consensus       239 g~V~i~d~~~-------------------------------------------~~~~~l~~H~~~V~~vafspdg~~las  275 (321)
                      +.|.++|+..                                           .++.+.++|.++|.+|.|||.|+-|+|
T Consensus       210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS  289 (433)
T ss_pred             CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence            6676666432                                           234567889999999999999999999


Q ss_pred             EeCCCcEEEEEEcCCCcEEEEEe--CCCcceeEEEeecCceEEE
Q 020784          276 SSTKGTLVRIFNTLDGTLLQEEC--CPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       276 ~S~Dgt~IrIWd~~tg~~i~~~~--~g~~~~~~~~s~d~~~la~  317 (321)
                      ||.|++ ||||.+..|.--..|.  +=.....+.+|.|++|+-.
T Consensus       290 gsyDks-IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S  332 (433)
T KOG0268|consen  290 GSYDKS-IRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS  332 (433)
T ss_pred             ccccce-EEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence            999999 9999999876543332  2233445577888888743

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.1e-20  Score=173.55  Aligned_cols=199  Identities=13%  Similarity=0.248  Sum_probs=148.9

Q ss_pred             CCCCEEEEEcCCc-EEEEEecCCcee------EEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC-
Q 020784           95 QDHGCFAAGTDHG-FRIYNCDPFREI------FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-  166 (321)
Q Consensus        95 ~dg~~lasg~~~g-v~vw~~~~~~~~------~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~-  166 (321)
                      |.+++|.+|+.|| +++|+.......      ...+. |...+..+....+++.++.++       .|-+|++|+...+ 
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~tlIS~S-------sDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGKTLISAS-------SDTTVKVWNAHKDN  106 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCCceEEec-------CCceEEEeecccCc
Confidence            4678899999887 679987544321      22222 667777777777888888888       7899999999877 


Q ss_pred             -cEEEEEeeC-CceeEEEE-eCCeEEEEE---CCEEEEEEcCCc--EEEEEEec------c-CCCCceEEEeeCCCceEE
Q 020784          167 -RCIGELSFR-SEVRSVKL-RRDRIIVVL---EQKIFVYNFADL--KLLHQIET------I-ANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       167 -~~~~~~~~~-~~v~~v~~-~~~~~~~~~---~~~I~iwd~~~~--~~~~~l~~------~-~~~~~~~~~s~~~d~~~l  231 (321)
                       -|..++..| ..|.+++. -++...+++   |+.|++||+..+  +++.++..      . .....+.++..++.+.++
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence             355566544 47999988 444444443   579999999876  44444421      1 112345566666666677


Q ss_pred             EeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce
Q 020784          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA  304 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~  304 (321)
                      + +|+..+.+++||-.+.. ++.++||+..|++|..+.||+.++|+|.||+ ||+||+...+|+.+|. .|...
T Consensus       187 v-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~-vH~e~  257 (735)
T KOG0308|consen  187 V-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYI-VHKEG  257 (735)
T ss_pred             E-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEE-eccCc
Confidence            6 69999999999988754 7789999999999999999999999999999 9999999999999985 44443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=5.8e-21  Score=179.01  Aligned_cols=221  Identities=10%  Similarity=0.125  Sum_probs=179.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEE-EEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~-vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .|...|.|+..-..++.+++|+.+-.. +|.+.....+..+.. |..+|.++.+.+...+++.++       .+|+||+|
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~Llaags-------asgtiK~w   97 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSERLLAAGS-------ASGTIKVW   97 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchhhhcccc-------cCCceeee
Confidence            455678888887778999999997755 999876665555555 789999999888877776666       67999999


Q ss_pred             eCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE---ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          162 DDHQSRCIGELSFRS-EVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       162 D~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~---~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      |++..+.++++.++. .+.+|.|++..-+.+   ++..+++||++...+.+.+.+|...+.+..|+|+  |.+++ +|+.
T Consensus        98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~--Gr~v~-~g~e  174 (825)
T KOG0267|consen   98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD--GRWVA-SGGE  174 (825)
T ss_pred             ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC--Cceee-ccCC
Confidence            999999888887664 788999999765553   3569999999999999999998777777777765  58998 5999


Q ss_pred             CCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc-ceeEEEeecCceE
Q 020784          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI-SAQSGLWLSSAWL  315 (321)
Q Consensus       238 dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~-~~~~~~s~d~~~l  315 (321)
                      |.+|+|||...+. ++.|+.|...|.++.|+|..-++++||.|++ |++||+++.+++........ .....|.++++-+
T Consensus       175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~  253 (825)
T KOG0267|consen  175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV  253 (825)
T ss_pred             cceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence            9999999997766 5699999999999999999999999999999 99999999888876644322 2233666666543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.6e-19  Score=165.41  Aligned_cols=227  Identities=12%  Similarity=0.081  Sum_probs=174.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .+++.|+++.|+++|++||+|..+| |.|||....+........|...|.+++|.  ...+.+.+       .|+.|.++
T Consensus       215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs-------r~~~I~~~  285 (484)
T KOG0305|consen  215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS-------RDGKILNH  285 (484)
T ss_pred             cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec-------CCCcEEEE
Confidence            3378999999999999999999977 66999988776555543246677777775  43333333       46999999


Q ss_pred             eCCCCcEEEE-Ee-eCCceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          162 DDHQSRCIGE-LS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       162 D~~~~~~~~~-~~-~~~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      |++..+.+.. +. +..+|..+.|+++....++   |+.+.|||....+.+.++..|...+..++++|...+.+....|+
T Consensus       286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence            9998775544 54 3458999999987655543   46999999988889999999999999999999876543333456


Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEE-EeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EEeecCc
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GLWLSSA  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las-~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~s~d~~  313 (321)
                      .|+.|++||..++.......-.+.|.+|.|++..+-|++ -+.-...|.||+..+.+.+..+ .||...++  ++++||+
T Consensus       366 ~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTSRVLYLALSPDGE  444 (484)
T ss_pred             cccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcceeEEEEECCCCC
Confidence            799999999988775554556678999999998865555 3443334999999999999888 57776655  6689999


Q ss_pred             eEEEee
Q 020784          314 WLRVLR  319 (321)
Q Consensus       314 ~la~~~  319 (321)
                      +++++.
T Consensus       445 ~i~t~a  450 (484)
T KOG0305|consen  445 TIVTGA  450 (484)
T ss_pred             EEEEec
Confidence            998864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3.7e-19  Score=159.72  Aligned_cols=202  Identities=14%  Similarity=0.195  Sum_probs=155.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      -+++|.|++-+|+|.+|+.|+..+ +.+|.+.++..+..+.. |-..|.++.++-++..+++++       .|+.|.+|+
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs~iiTgs-------kDg~V~vW~  151 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGSHIITGS-------KDGAVLVWL  151 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCcEEEecC-------CCccEEEEE
Confidence            456899999999999999997755 88999999987766643 778999999998888887777       789999997


Q ss_pred             CC-------C--CcEEEEEeeCC-ceeEEEEeCC----eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCC
Q 020784          163 DH-------Q--SRCIGELSFRS-EVRSVKLRRD----RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (321)
Q Consensus       163 ~~-------~--~~~~~~~~~~~-~v~~v~~~~~----~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d  227 (321)
                      +-       +  -+....+..|. +|+.+.....    +++.+ .|.++|+||+..+.++.++...   ..+.++..++.
T Consensus       152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDpa  228 (476)
T KOG0646|consen  152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDPA  228 (476)
T ss_pred             EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEccc
Confidence            42       1  12333344343 6887776543    44444 4679999999999999888754   33444444444


Q ss_pred             ceEEEeecCCCCcEEEEeeCC-----------------cceEEeecccc--ceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          228 SLVLVCPGLQKGQVRVEHYAS-----------------KRTKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~-----------------~~~~~l~~H~~--~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      ...+. .|+.+|.|.+.++..                 .+...+.+|.+  +|+|++++-||.+|++|+.||+ |.|||+
T Consensus       229 e~~~y-iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi  306 (476)
T KOG0646|consen  229 ERVVY-IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDI  306 (476)
T ss_pred             ccEEE-ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEec
Confidence            45544 399999999854321                 13447889998  9999999999999999999999 999999


Q ss_pred             CCCcEEEEEe
Q 020784          289 LDGTLLQEEC  298 (321)
Q Consensus       289 ~tg~~i~~~~  298 (321)
                      .+.+|++++.
T Consensus       307 ~S~Q~iRtl~  316 (476)
T KOG0646|consen  307 YSKQCIRTLQ  316 (476)
T ss_pred             chHHHHHHHh
Confidence            9999998875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.83  E-value=5e-19  Score=155.36  Aligned_cols=195  Identities=11%  Similarity=0.144  Sum_probs=151.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecC-----Cce--------------------eEEeeeecCCceEEEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP-----FRE--------------------IFRRDFERGGGIGVVEM  135 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~-----~~~--------------------~~~~~~~~~~~v~~v~~  135 (321)
                      ++|+..|.||+..++|..+++|+-|. +.||+...     .+.                    +..... |...|..|.|
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w  268 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVW  268 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEE
Confidence            48999999999999999999999765 78999321     100                    111111 6677888887


Q ss_pred             ecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe-EEEE--ECCEEEEEEcCCc---EEEEE
Q 020784          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVV--LEQKIFVYNFADL---KLLHQ  209 (321)
Q Consensus       136 ~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~--~~~~I~iwd~~~~---~~~~~  209 (321)
                      +. ...+..++       .|++||.||+.+++++.++.......++..++.. ++++  ++..||+||.+++   -..++
T Consensus       269 ~d-~~v~yS~S-------wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s  340 (423)
T KOG0313|consen  269 SD-ATVIYSVS-------WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS  340 (423)
T ss_pred             cC-CCceEeec-------ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence            65 33444445       6899999999999999999999999999998753 3333  3569999999753   23457


Q ss_pred             EeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       210 l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      |.+|.+.+..+..++..  .++.+||+.||++++||.+.  .++..+.+|...|.++.|+ +|.+++||+.|++ |||+.
T Consensus       341 ~~gH~nwVssvkwsp~~--~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~-l~i~~  416 (423)
T KOG0313|consen  341 LIGHKNWVSSVKWSPTN--EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK-LRIFK  416 (423)
T ss_pred             eecchhhhhheecCCCC--ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcce-EEEec
Confidence            88898888777777654  44445899999999999875  3688999999999999998 4778999999999 99986


Q ss_pred             cC
Q 020784          288 TL  289 (321)
Q Consensus       288 ~~  289 (321)
                      -.
T Consensus       417 ~~  418 (423)
T KOG0313|consen  417 GS  418 (423)
T ss_pred             cc
Confidence            44

>PTZ00420 coronin; Provisional

Probab=99.83  E-value=7e-18  Score=162.14  Aligned_cols=198  Identities=11%  Similarity=0.063  Sum_probs=138.6

Q ss_pred             EEEEEecCCceeEEeeeecCCceEEEEEecC-CCeEEEEeCCCCCCCCCCcEEEEeCCCCc--------EEEEEe-eCCc
Q 020784          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-FRSE  177 (321)
Q Consensus       108 v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~sg~~~~~~~d~~v~iWD~~~~~--------~~~~~~-~~~~  177 (321)
                      +++|+......+..... |.+.|..++|++. ++.+++++       .|++|+|||+.++.        .+..+. +...
T Consensus        56 I~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS-------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         56 IRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGS-------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             EEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEe-------CCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            67998776554444443 6788999999886 67777776       68999999997642        122333 3357


Q ss_pred             eeEEEEeCCe--E-EEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eE
Q 020784          178 VRSVKLRRDR--I-IVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TK  252 (321)
Q Consensus       178 v~~v~~~~~~--~-~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~  252 (321)
                      |.+++|++..  + +.+ .+++|++||+++++.+..+..+ .  .+.++++++++.+|++ ++.|+.|+|||...+. +.
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~--~V~SlswspdG~lLat-~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K--KLSSLKWNIKGNLLSG-TCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C--cEEEEEECCCCCEEEE-EecCCEEEEEECCCCcEEE
Confidence            9999999853  3 333 3679999999998887777532 3  3555566667788884 7889999999998765 56


Q ss_pred             EeeccccceeE-----EEECCCCCEEEEEeCCC----cEEEEEEcCC-CcEEEEEeCCCcceeE--EE-eecCceEEEe
Q 020784          253 FIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQEECCPSISAQS--GL-WLSSAWLRVL  318 (321)
Q Consensus       253 ~l~~H~~~V~~-----vafspdg~~las~S~Dg----t~IrIWd~~t-g~~i~~~~~g~~~~~~--~~-s~d~~~la~~  318 (321)
                      ++.+|.+.+.+     ..|++++.+|+|++.|+    + |+|||+++ ++.+..+........+  .+ ..+|.+++++
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            88999876543     34568999999988775    6 99999995 6667665433322232  22 2346666654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.83  E-value=1.7e-18  Score=151.38  Aligned_cols=225  Identities=11%  Similarity=0.098  Sum_probs=169.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|...|.+|+.+|+.+++|+|+.|. ..||+..++........ |+..|.++.|++++.++|+..       -+|.|+
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGd-------msG~v~  131 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGD-------MSGKVL  131 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecC-------CCccEE
Confidence            457889999999999999999999855 55999999987766665 788999999999998888776       679999


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      ||+..++.....+... ..+-=+.||+..  ++++ .++.+-+|.+.++...+.+.+|..+..+-.|.++  |+.++ .|
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd--GKr~~-tg  208 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD--GKRIL-TG  208 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC--CceEE-EE
Confidence            9999999887776533 356678889864  2333 3579999999988888899998888777777776  46676 48


Q ss_pred             CCCCcEEEEeeCCcc-eEEe-------------------------------------------e--------ccccceeE
Q 020784          236 LQKGQVRVEHYASKR-TKFI-------------------------------------------M--------AHDSRIAC  263 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l-------------------------------------------~--------~H~~~V~~  263 (321)
                      ..||+|++|+..+.. +..+                                           .        .|...+.|
T Consensus       209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es  288 (399)
T KOG0296|consen  209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES  288 (399)
T ss_pred             ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence            999999999965431 1111                                           1        22333344


Q ss_pred             EEE---CCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecC-ceEEEee
Q 020784          264 FAL---TQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSS-AWLRVLR  319 (321)
Q Consensus       264 vaf---spdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~-~~la~~~  319 (321)
                      |.|   +..-.++|+|+.||+ |-|||+.+.++.+.+  .|...++.+-|.+ .||+.|.
T Consensus       289 ve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c--~he~~V~~l~w~~t~~l~t~c  345 (399)
T KOG0296|consen  289 VESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHIC--EHEDGVTKLKWLNTDYLLTAC  345 (399)
T ss_pred             hhhcccccccchhhcccccce-EEEEecccchhheec--cCCCceEEEEEcCcchheeec
Confidence            444   445578899999999 999999998877666  3455566666666 7766653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.1e-18  Score=146.15  Aligned_cols=220  Identities=16%  Similarity=0.117  Sum_probs=154.9

Q ss_pred             EEEEEcC--CCCE-EEEEcC------CcEEEEEec-CCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           89 LHISFNQ--DHGC-FAAGTD------HGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        89 ~~v~fs~--dg~~-lasg~~------~gv~vw~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      +++.|||  ++++ +|++..      +.+.|-+.. ..+......+.....+..|+|+.....++++..|      ||.+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G------DGSL   85 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG------DGSL   85 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec------CceE
Confidence            5688888  3443 233332      224566764 4443333444346778888998765444443332      6999


Q ss_pred             EEEeCCCC-cEEEEEeeC-CceeEEEEeCC---e-EEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          159 MIWDDHQS-RCIGELSFR-SEVRSVKLRRD---R-IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       159 ~iWD~~~~-~~~~~~~~~-~~v~~v~~~~~---~-~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      +|||+... ..+..++.+ .+|.++.|+..   . +....|++|++|+....+.+++|.+|..-+....++|... .+++
T Consensus        86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-nlfa  164 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP-NLFA  164 (311)
T ss_pred             EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC-CeEE
Confidence            99996543 345555544 48999999853   2 3333578999999999999999999988888888888754 4556


Q ss_pred             eecCCCCcEEEEeeCC-cceEEeeccccceeEEEEC-CCCCEEEEEeCCCcEEEEEEcCCCc-EEEEEeCCCcceeEEEe
Q 020784          233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGT-LLQEECCPSISAQSGLW  309 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~-~~~~~l~~H~~~V~~vafs-pdg~~las~S~Dgt~IrIWd~~tg~-~i~~~~~g~~~~~~~~s  309 (321)
                       +.+.||.+++||+.. +....+.+|...+.|+.|+ -+...||||+.|+. ||+||++..+ .+.++ .||.-++..+.
T Consensus       165 -s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL-~gh~~AVRkvk  241 (311)
T KOG0277|consen  165 -SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFEL-NGHGLAVRKVK  241 (311)
T ss_pred             -EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceee-cCCceEEEEEe
Confidence             589999999999875 4455699999999999999 57789999999999 9999999854 46666 57776655444


Q ss_pred             ecC---ceEEEe
Q 020784          310 LSS---AWLRVL  318 (321)
Q Consensus       310 ~d~---~~la~~  318 (321)
                      +++   ..||.|
T Consensus       242 ~Sph~~~lLaSa  253 (311)
T KOG0277|consen  242 FSPHHASLLASA  253 (311)
T ss_pred             cCcchhhHhhhc
Confidence            444   444443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.82  E-value=2.4e-18  Score=151.10  Aligned_cols=224  Identities=13%  Similarity=0.103  Sum_probs=161.5

Q ss_pred             cCCCCCCeEEEEEcC-CC--CEEEEEcC-CcEEEEEecCCceeEEeee---ecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQ-DH--GCFAAGTD-HGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg--~~lasg~~-~gv~vw~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      ..+|.++|.+++|-- |.  ..|++++. .++++|..+.+........   .|...|.+|....++..++.++       
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS-------  212 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS-------  212 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-------
Confidence            357888999888753 32  24777776 6688998876543221111   2788899999888888777766       


Q ss_pred             CCCcEEEEeCCCC-------------------------cEEEEEeeC-CceeEEEEeCCe-EEEE-ECCEEEEEEcCCcE
Q 020784          154 PLNKVMIWDDHQS-------------------------RCIGELSFR-SEVRSVKLRRDR-IIVV-LEQKIFVYNFADLK  205 (321)
Q Consensus       154 ~d~~v~iWD~~~~-------------------------~~~~~~~~~-~~v~~v~~~~~~-~~~~-~~~~I~iwd~~~~~  205 (321)
                      .|.+|+||+..+.                         ..+.++..| ..|.+|.|.... ++.+ .|.+|+.||+.+++
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc
Confidence            6899999992211                         112223333 478889987643 3334 46799999999999


Q ss_pred             EEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc----eEEeeccccceeEEEECCC-CCEEEEEeCCC
Q 020784          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD-GQLLATSSTKG  280 (321)
Q Consensus       206 ~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~----~~~l~~H~~~V~~vafspd-g~~las~S~Dg  280 (321)
                      ++.++.+.   ....+++..+...+|| +|+.|..+++||-+.+.    ..+|.+|++-|.+|.|+|. ..+|++||.|+
T Consensus       293 ~~~~~~~~---ksl~~i~~~~~~~Ll~-~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  293 LKSTLTTN---KSLNCISYSPLSKLLA-SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             ceeeeecC---cceeEeecccccceee-ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            88887764   2355566666778888 59999999999977542    3478999999999999986 46799999999


Q ss_pred             cEEEEEEcCCCc-EEEEEeCCCcceeEEEee-cCceEEE
Q 020784          281 TLVRIFNTLDGT-LLQEECCPSISAQSGLWL-SSAWLRV  317 (321)
Q Consensus       281 t~IrIWd~~tg~-~i~~~~~g~~~~~~~~s~-d~~~la~  317 (321)
                      + +|+||+++-+ .++.+ .+|....++.-| .+.+|+.
T Consensus       369 t-~klWDvRS~k~plydI-~~h~DKvl~vdW~~~~~IvS  405 (423)
T KOG0313|consen  369 T-VKLWDVRSTKAPLYDI-AGHNDKVLSVDWNEGGLIVS  405 (423)
T ss_pred             e-EEEEEeccCCCcceee-ccCCceEEEEeccCCceEEe
Confidence            9 9999999988 78888 466666666654 4445544

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.3e-18  Score=161.75  Aligned_cols=211  Identities=15%  Similarity=0.081  Sum_probs=172.4

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcE
Q 020784           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~  168 (321)
                      +-+.|+ ....||+|....|.+|+..++.....-.+ +...+..+.|++++..+++..       .+|.|.|||..+.+.
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~~LavG~-------~~g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGSHLAVGT-------SDGTVQIWDVKEQKK  251 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec-CCCceEEEEECCCCCEEEEee-------cCCeEEEEehhhccc
Confidence            346677 45579999999999999988875544444 367899999999999999988       679999999998888


Q ss_pred             EEEEee--CCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEE-EeccCCCCceEEEeeCCCceEEEeecCCCCcEEEE
Q 020784          169 IGELSF--RSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (321)
Q Consensus       169 ~~~~~~--~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~-l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~  244 (321)
                      +.++..  ...|.+++|+...+..+. ++.|..+|++..+.... +.+|.+  .+|.+....|+..+| ||+.|+.+.||
T Consensus       252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q--eVCgLkws~d~~~lA-SGgnDN~~~Iw  328 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ--EVCGLKWSPDGNQLA-SGGNDNVVFIW  328 (484)
T ss_pred             cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccc--eeeeeEECCCCCeec-cCCCccceEec
Confidence            888776  458999999977776665 46999999987665544 555554  477777788889999 79999999999


Q ss_pred             eeCC-cceEEeeccccceeEEEECCC-CCEEEEE--eCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecC
Q 020784          245 HYAS-KRTKFIMAHDSRIACFALTQD-GQLLATS--STKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       245 d~~~-~~~~~l~~H~~~V~~vafspd-g~~las~--S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                      |... .+...+..|..+|..++|+|- ..+||+|  +.|++ ||+||+.+|++++....+...+.+..+...
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDTGSQVCSLIWSKKY  399 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecccccCCceeeEEEcCCC
Confidence            9854 457799999999999999985 6789996  56998 999999999999999888887777666555

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=7.3e-18  Score=145.06  Aligned_cols=203  Identities=16%  Similarity=0.145  Sum_probs=157.1

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      -.||.|++.|.+||.|..+| |.|||+.+.+.-..... |-.+|.+++|+.++..+.+++       .|..|++||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS-------~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSS-------RDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeec-------CCceeEEEeccCC
Confidence            78999999999999999877 77999999875444443 678999999999999999988       7899999999999


Q ss_pred             cEEEEEeeCCceeEEEEeCC-------------------------------------------------eEEEEEC-CEE
Q 020784          167 RCIGELSFRSEVRSVKLRRD-------------------------------------------------RIIVVLE-QKI  196 (321)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~-------------------------------------------------~~~~~~~-~~I  196 (321)
                      .++..+.+.++|..+.||+.                                                 .+++++. |.+
T Consensus        98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl  177 (405)
T KOG1273|consen   98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL  177 (405)
T ss_pred             CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence            99999999988888877753                                                 2334433 589


Q ss_pred             EEEEcCCcEEEEEEeccC-CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc----c--eEE-eecc-----ccceeE
Q 020784          197 FVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----R--TKF-IMAH-----DSRIAC  263 (321)
Q Consensus       197 ~iwd~~~~~~~~~l~~~~-~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~----~--~~~-l~~H-----~~~V~~  263 (321)
                      .+||..+.+++..++-.. ..+..+-++..+  ..+++ .+.|..||.++.+.-    .  ..+ ....     +-.=.+
T Consensus       178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g--~~lii-NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  178 LVYDAETLECVASFRITSVQAIKQIIVSRKG--RFLII-NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             EEEecchheeeeeeeechheeeeEEEEeccC--cEEEE-ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            999999999888886544 445566666665  55554 788999999886521    0  011 0111     123368


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       264 vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      ++||.+|.|++.++.-...+.||....|.+++-+. |..
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~k  292 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTK  292 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeeec-CCc
Confidence            99999999999888777779999999999999884 444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.80  E-value=1.3e-16  Score=142.64  Aligned_cols=220  Identities=14%  Similarity=0.107  Sum_probs=154.3

Q ss_pred             CeEEEEEcCCCCEE-EEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCF-AAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~l-asg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+.+++|++||+.+ ++++. +.+++||..+++.......  ......+.++++++.++++++      .++.|++||++
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~------~~~~l~~~d~~  103 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIANE------DDNLVTVIDIE  103 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEcC------CCCeEEEEECC
Confidence            46789999999876 56555 5588999988776543332  334556778888887766542      36899999999


Q ss_pred             CCcEEEEEeeCCceeEEEEeCCe--EEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          165 QSRCIGELSFRSEVRSVKLRRDR--IIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      +++.+..+.....+.++.++++.  ++++..  ..+.+||..+++.+..+.....+ ..++++  +++..+++++..+|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~s--~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRP-RFAEFT--ADGKELWVSSEIGGT  180 (300)
T ss_pred             CCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCc-cEEEEC--CCCCEEEEEcCCCCE
Confidence            98888777766667888998764  444433  36788899888776665433222 334444  455666555677899


Q ss_pred             EEEEeeCCcce-EEeeccc-----c--ceeEEEECCCCCEEEE-EeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeec
Q 020784          241 VRVEHYASKRT-KFIMAHD-----S--RIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLS  311 (321)
Q Consensus       241 V~i~d~~~~~~-~~l~~H~-----~--~V~~vafspdg~~las-~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d  311 (321)
                      |++||..+... ..+..+.     .  ....++|+|+|+++.. .+.+++ |.|||+++++++..+..++....+.++++
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  259 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLVGQRVWQLAFTPD  259 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEeCCCcceEEECCC
Confidence            99999987653 3443221     1  2457899999997544 455667 99999999999877766666666788899


Q ss_pred             CceEEEe
Q 020784          312 SAWLRVL  318 (321)
Q Consensus       312 ~~~la~~  318 (321)
                      |++|+++
T Consensus       260 g~~l~~~  266 (300)
T TIGR03866       260 EKYLLTT  266 (300)
T ss_pred             CCEEEEE
Confidence            9998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.80  E-value=1.5e-18  Score=162.83  Aligned_cols=198  Identities=15%  Similarity=0.196  Sum_probs=156.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecC---CCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR---CNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..+..|+|++++|||++||+|...| +|||++...+.....+. |+..|.++++++.   ..++|.++       .|+-|
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASas-------rdRlI  528 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASAS-------RDRLI  528 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhcc-------CCceE
Confidence            4556899999999999999999854 99999998887766666 7889999999774   23445444       57899


Q ss_pred             EEEeCCC-CcEEEEEeeC-CceeEEEEeCC--------------------------------------------------
Q 020784          159 MIWDDHQ-SRCIGELSFR-SEVRSVKLRRD--------------------------------------------------  186 (321)
Q Consensus       159 ~iWD~~~-~~~~~~~~~~-~~v~~v~~~~~--------------------------------------------------  186 (321)
                      .|+|+.. ...+.++..+ ..|++|.|-..                                                  
T Consensus       529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~  608 (1080)
T KOG1408|consen  529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS  608 (1080)
T ss_pred             EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence            9999764 3344454433 34555554211                                                  


Q ss_pred             --eEEEEECCEEEEEEcCCcEEEEEEeccCC-CCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeecccccee
Q 020784          187 --RIIVVLEQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA  262 (321)
Q Consensus       187 --~~~~~~~~~I~iwd~~~~~~~~~l~~~~~-~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~  262 (321)
                        .+.+|.|..|||||+.+++.++.|++... ....+-+..+|.+.++|+ ...|+++.++|+..+. +.+..||...|+
T Consensus       609 k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~at-Scsdktl~~~Df~sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  609 KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLAT-SCSDKTLCFVDFVSGECVAQMTGHSEAVT  687 (1080)
T ss_pred             ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEE-eecCCceEEEEeccchhhhhhcCcchhee
Confidence              23445678999999999999999988443 456778888999999996 5668899999987765 568999999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          263 CFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       263 ~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      .+.|.+|.++|++.|.||. |-||.+..
T Consensus       688 G~kF~nDCkHlISvsgDgC-IFvW~lp~  714 (1080)
T KOG1408|consen  688 GVKFLNDCKHLISVSGDGC-IFVWKLPL  714 (1080)
T ss_pred             eeeecccchhheeecCCce-EEEEECch
Confidence            9999999999999999999 99999875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.80  E-value=5.5e-19  Score=156.53  Aligned_cols=223  Identities=13%  Similarity=0.166  Sum_probs=171.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|.+.|..+.|-++...|++|+.+ -|++|++...+......+. ..+.+..+++..++..++.++       +|++++
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas-------~d~~~r  244 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS-------NDKNLR  244 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec-------CCCcee
Confidence            5688899999999998889988875 5779999777643333331 245688888877777777666       789999


Q ss_pred             EEeCCCCcEEEEEeeCC-ceeEEEEeCCeE-EEE-E-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSFRS-EVRSVKLRRDRI-IVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~-~~~-~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +||+...+...++..|. .|+++.|..... ++. . |.+|++||+.+..+.+++-....   +.++...+  ..++ ||
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~---cnDI~~~~--~~~~-Sg  318 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ---CNDIVCSI--SDVI-SG  318 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc---ccceEecc--eeee-ec
Confidence            99999999988888765 799998876554 332 2 45999999999888777654332   22333321  3344 79


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe-----CCCcceeEEEe
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC-----CPSISAQSGLW  309 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~-----~g~~~~~~~~s  309 (321)
                      ..|++|+.||..... ......|. .|++|..+++|..|.+++.|++ +++.|+++.+..++|.     .+++-....||
T Consensus       319 H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvfS  396 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS  396 (459)
T ss_pred             ccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEEC
Confidence            999999999977655 44555555 8999999999999999999999 9999999998888764     45666677999


Q ss_pred             ecCceEEEee
Q 020784          310 LSSAWLRVLR  319 (321)
Q Consensus       310 ~d~~~la~~~  319 (321)
                      +++.|+|+-+
T Consensus       397 pd~~YvaAGS  406 (459)
T KOG0288|consen  397 PDGSYVAAGS  406 (459)
T ss_pred             CCCceeeecc
Confidence            9999998754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.79  E-value=6.2e-18  Score=151.45  Aligned_cols=221  Identities=12%  Similarity=0.047  Sum_probs=156.5

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEecCCceeE----------EeeeecCCceEEEEEecCCCeEEEEeCCC
Q 020784           82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIF----------RRDFERGGGIGVVEMLFRCNILALVGGGP  149 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasg~~~g-v~vw~~~~~~~~~----------~~~~~~~~~v~~v~~~~~~~~~~~~sg~~  149 (321)
                      -.|.+.|+.++..|... ++|+++..+ +.|||.....-..          .... |.+.-..+.|........+.+ + 
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~Lls~-~-  197 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGTLLSG-S-  197 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-ecccccccccccccceeEeec-c-
Confidence            46888999999999775 555666655 7899985432111          2222 455444566655444333333 2 


Q ss_pred             CCCCCCCcEEEEeCCCCcE-------EEEEeeC-CceeEEEEeCC---eEEEEEC-CEEEEEEcC--CcEEEEEEeccCC
Q 020784          150 DPQYPLNKVMIWDDHQSRC-------IGELSFR-SEVRSVKLRRD---RIIVVLE-QKIFVYNFA--DLKLLHQIETIAN  215 (321)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~-------~~~~~~~-~~v~~v~~~~~---~~~~~~~-~~I~iwd~~--~~~~~~~l~~~~~  215 (321)
                          +|++|++||+.....       ...+..+ ..|..++|++.   .+..+++ +.+.|||+|  +.+..+..+.|..
T Consensus       198 ----~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  198 ----DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             ----CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence                679999999865332       1223333 36778888753   4555554 699999999  6666777788889


Q ss_pred             CCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCc
Q 020784          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      ++.+++|++.. ..+|| +|+.||+|.+||++.  .+++++.+|...|.+|.|||+ ...|||++.|+. +.|||+..-.
T Consensus       274 ~vn~~~fnp~~-~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig  350 (422)
T KOG0264|consen  274 EVNCVAFNPFN-EFILA-TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIG  350 (422)
T ss_pred             ceeEEEeCCCC-CceEE-eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccc
Confidence            99999998875 46677 699999999999875  457899999999999999997 568999999999 9999998522


Q ss_pred             EEE-------------EEeCCCcceeEEEeecC
Q 020784          293 LLQ-------------EECCPSISAQSGLWLSS  312 (321)
Q Consensus       293 ~i~-------------~~~~g~~~~~~~~s~d~  312 (321)
                      ..+             =...||...+.-|++++
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp  383 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP  383 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCC
Confidence            111             12357777777777776

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.5e-16  Score=131.34  Aligned_cols=221  Identities=16%  Similarity=0.236  Sum_probs=162.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEec--------------CCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCD--------------PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~--------------~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      ..|++|+|+|.|.+.|+|++ +++||--..              +....+.+.-.|.+.|.+++|++.+.++++.+    
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs----  108 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS----  108 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC----
Confidence            47999999999999999998 777776321              11233333333789999999999999998877    


Q ss_pred             CCCCCCcEEEEeCCCCcEE-----EEEe-eCCceeEEEEeCC-----e-EEEEE--CCEEEEEEcCCcEEEEEEeccCCC
Q 020784          151 PQYPLNKVMIWDDHQSRCI-----GELS-FRSEVRSVKLRRD-----R-IIVVL--EQKIFVYNFADLKLLHQIETIANP  216 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~-----~~~~-~~~~v~~v~~~~~-----~-~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~  216 (321)
                         +|++||+.-++...+.     .++. +.+.|..++|..+     . ++.+.  +.+|.+=|...++-++.+.+|..-
T Consensus       109 ---ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  109 ---NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ---CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence               8899999876543321     1333 3468999998643     2 33333  347778788899999988887543


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEee--cc-----ccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM--AH-----DSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~--~H-----~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      + ..-+++++  ..++ +|+.|.+|+.||+.-.. +.++.  .|     .+.|.+|+..|.|++||+|-.|.. ..++|+
T Consensus       186 i-lalyswn~--~m~~-sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydi  260 (350)
T KOG0641|consen  186 I-LALYSWNG--AMFA-SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDI  260 (350)
T ss_pred             E-EEEEEecC--cEEE-ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEe
Confidence            2 23346654  6666 79999999999987543 34432  12     367999999999999999999999 889999


Q ss_pred             CCCcEEEEEeCCCcc--eeEEEeecCceEEEee
Q 020784          289 LDGTLLQEECCPSIS--AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       289 ~tg~~i~~~~~g~~~--~~~~~s~d~~~la~~~  319 (321)
                      +-|..++.|. .|..  ..+.|++.-.||..++
T Consensus       261 rg~r~iq~f~-phsadir~vrfsp~a~yllt~s  292 (350)
T KOG0641|consen  261 RGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCS  292 (350)
T ss_pred             eCCceeeeeC-CCccceeEEEeCCCceEEEEec
Confidence            9999999985 3333  3457888888887654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.79  E-value=3.8e-18  Score=153.07  Aligned_cols=210  Identities=13%  Similarity=0.149  Sum_probs=166.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCcee---EEe------ee--------ecCCceEEEEEecCCCeE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI---FRR------DF--------ERGGGIGVVEMLFRCNIL  142 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~---~~~------~~--------~~~~~v~~v~~~~~~~~~  142 (321)
                      ...|.-+|.||++++|+++..+++.++ |.=|++.+++..   ..+      ++        .|...+.+++++.++.++
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence            356788999999999999999998865 668988766532   111      00        156678888999999999


Q ss_pred             EEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeC--CeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCc
Q 020784          143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKG  218 (321)
Q Consensus       143 ~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~--~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~  218 (321)
                      ++.+       .|+.|.|||.++.+.+..+..+ ..|.+++|-.  +.++++ .|..|++|++.....+.++-+|...+.
T Consensus       218 atgg-------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  218 ATGG-------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL  290 (479)
T ss_pred             EecC-------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence            8877       5789999999999988887655 5899999853  455555 577999999999988888888876554


Q ss_pred             eEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      .++....  ...+. .|.-|.++++|.+......++.+|.+.+-|++|-.+ ..|+|||+||. |-+|++.+.+.+.+.+
T Consensus       291 ~IdaL~r--eR~vt-VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  291 GIDALSR--ERCVT-VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTSR  365 (479)
T ss_pred             eechhcc--cceEE-eccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEee
Confidence            4443322  24444 589999999999977778899999999999999865 56899999999 9999999999998887


Q ss_pred             CCCc
Q 020784          299 CPSI  302 (321)
Q Consensus       299 ~g~~  302 (321)
                      ..|.
T Consensus       366 ~AHg  369 (479)
T KOG0299|consen  366 LAHG  369 (479)
T ss_pred             cccc
Confidence            6655

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=3.3e-18  Score=142.54  Aligned_cols=229  Identities=17%  Similarity=0.155  Sum_probs=159.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCce-eEEeeee-cCCceEEEEEec--CCCeEEEEeCCCCCCC
Q 020784           79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFRE-IFRRDFE-RGGGIGVVEMLF--RCNILALVGGGPDPQY  153 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~-~~~~~~~-~~~~v~~v~~~~--~~~~~~~~sg~~~~~~  153 (321)
                      .+...|+.-|..+...--|++||+++. +.|+|+.+..... ....++. |.+++-.+.|..  -++++|.++       
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------   77 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------   77 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------
Confidence            444567778888888888999998776 5599999976553 2222332 789999999966  578888888       


Q ss_pred             CCCcEEEEeCCCCcEEEEEe---eCCceeEEEEeCCe----EEEE-ECCEEEEEEcCCc--EE-EEEEeccCCCCceEEE
Q 020784          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDR----IIVV-LEQKIFVYNFADL--KL-LHQIETIANPKGLCAV  222 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~---~~~~v~~v~~~~~~----~~~~-~~~~I~iwd~~~~--~~-~~~l~~~~~~~~~~~~  222 (321)
                      .|++|.||.-.+++..+...   +...|.+++|-+..    ++++ +|+.|.|.+.+..  -. -+....|.-.+..++.
T Consensus        78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence            78999999988886433322   34589999987652    3333 4689999888542  11 1223344433444444


Q ss_pred             eeCC-Cc-----------eEEEeecCCCCcEEEEeeCCcc---eEEeeccccceeEEEECCCC----CEEEEEeCCCcEE
Q 020784          223 SQGV-GS-----------LVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDG----QLLATSSTKGTLV  283 (321)
Q Consensus       223 s~~~-d~-----------~~la~sGs~dg~V~i~d~~~~~---~~~l~~H~~~V~~vafspdg----~~las~S~Dgt~I  283 (321)
                      ++.. ++           ..|+ +|+.|..|+||++....   ..+|.+|.+-|+.+||.|.-    .+|||||+||+ |
T Consensus       158 apa~~~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-v  235 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-V  235 (299)
T ss_pred             cCcCCCccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-E
Confidence            4330 01           3366 69999999999988743   44799999999999999974    57999999999 8


Q ss_pred             EEEEcCC------CcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          284 RIFNTLD------GTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       284 rIWd~~t------g~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      -||-.+.      ++++++|.  .-.-.++.|++|..|||+
T Consensus       236 iIwt~~~e~e~wk~tll~~f~--~~~w~vSWS~sGn~LaVs  274 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLEEFP--DVVWRVSWSLSGNILAVS  274 (299)
T ss_pred             EEEEecCccCcccccccccCC--cceEEEEEeccccEEEEe
Confidence            8997762      23334331  112356888999999985

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=2.4e-17  Score=148.85  Aligned_cols=197  Identities=14%  Similarity=0.117  Sum_probs=150.3

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCcEE-EEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDH-GCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasg~~~gv~-vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|..+|..+.|+|++ +.|++|+||.++ +||+.+......... |..-|.+.++++-...+++.| +     .||+||
T Consensus       107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtG-s-----YDg~vr  179 (487)
T KOG0310|consen  107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTG-S-----YDGKVR  179 (487)
T ss_pred             hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEec-C-----CCceEE
Confidence            5688899999999854 677889987754 999988775333333 678899999988776665544 3     589999


Q ss_pred             EEeCCCC-cEEEEEeeCCceeEEEEeCC--eEEEEECCEEEEEEcC-CcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQS-RCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~-~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~I~iwd~~-~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +||.+.. ..+.++.+..+|-.+.+-+.  .++.++++.|++||+. .++++..+..|...+.++++..++  .-|. ||
T Consensus       180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~--~rLl-S~  256 (487)
T KOG0310|consen  180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS--TRLL-SG  256 (487)
T ss_pred             EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCC--ceEe-ec
Confidence            9999876 78889999999999998765  4555667799999997 456555555576667777776643  4555 59


Q ss_pred             CCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       236 s~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      +-||.|+++|+.+-++..--...++|.+++.+|+++.++.|..||. +-+=+..
T Consensus       257 sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGl-v~~rr~~  309 (487)
T KOG0310|consen  257 SLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGL-VSIRRRE  309 (487)
T ss_pred             ccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccce-eeeehhh
Confidence            9999999999655443333346789999999999999999999998 7555433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=1.1e-17  Score=157.82  Aligned_cols=202  Identities=14%  Similarity=0.182  Sum_probs=160.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecC-----Cc--ee------EEeeeecCCceEEEEEecCCCeEEEEeC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDP-----FR--EI------FRRDFERGGGIGVVEMLFRCNILALVGG  147 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~-----~~--~~------~~~~~~~~~~v~~v~~~~~~~~~~~~sg  147 (321)
                      ..|.+.|.+++.+||++.+++|+. ++|++|+..-     +.  ..      ...++  ...+.++++++++.+++++= 
T Consensus       451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdgk~LaVsL-  527 (888)
T KOG0306|consen  451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDGKLLAVSL-  527 (888)
T ss_pred             hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCCcEEEEEe-
Confidence            478899999999999999999987 5688998631     11  11      12233  56789999999999998876 


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE--E-CCEEEEEEcCCcEEEEEEeccCCCCceEEEe
Q 020784          148 GPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~--~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s  223 (321)
                            -|++|+||=+++.+....+-+|. +|.++.++++.-.++  + |+.|+||-+.=|.+-+.|-.|...+..+-|.
T Consensus       528 ------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  528 ------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             ------ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence                  68999999999988766666665 999999998754333  2 4699999999999999998887776666666


Q ss_pred             eCCCceEEEeecCCCCcEEEEeeCC-cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 020784          224 QGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (321)
Q Consensus       224 ~~~d~~~la~sGs~dg~V~i~d~~~-~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~  296 (321)
                      |.  ..++. +++.||.|+-||-.. ..+..+.+|...|+|++.+|+|.+++|+|.|.+ ||+|......++.+
T Consensus       602 P~--~~~FF-t~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s-IRlwE~tde~~~lE  671 (888)
T KOG0306|consen  602 PK--THLFF-TCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS-IRLWERTDEILILE  671 (888)
T ss_pred             cc--ceeEE-EecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce-eEeeeccCcceeee
Confidence            63  23333 579999999998654 457799999999999999999999999999999 99999777555443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.79  E-value=4.8e-16  Score=138.91  Aligned_cols=213  Identities=10%  Similarity=0.034  Sum_probs=147.7

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg-~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+..++|+|+|+.|+++ +. +.+++||+.+.+.+.....  ......+.+++++..++++...      ...+.+||.+
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~  145 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTK  145 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecC------CCeEEEEeCC
Confidence            35678999999977654 43 4588999988766544442  3445677888888888776632      2457788998


Q ss_pred             CCcEEEEEeeCCceeEEEEeCCe--EEEEE--CCEEEEEEcCCcEEEEEEeccC-----CCCceEEEeeCCCceEEEeec
Q 020784          165 QSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~~~~~l~~~~-----~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +++....+.....+..+.|+++.  +++..  ++.|++||+.+++.++.+..+.     .......+..++++..+.++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            88776665555566778887653  44443  5799999999998877765321     111222333444555543334


Q ss_pred             CCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEE-eCCCcEEEEEEcCCCcEEEEEeCCCcceeEEE
Q 020784          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEECCPSISAQSGL  308 (321)
Q Consensus       236 s~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~-S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~  308 (321)
                      ..++.|.+||..+..+.....+...+.+++|+|+|++|+++ +.+|+ |+|||+++++++.++..+...-.+.+
T Consensus       226 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~~~  298 (300)
T TIGR03866       226 GPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSND-VSVIDVAALKVIKSIKVGRLPWGVVV  298 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEcccccceeEe
Confidence            55668999998776654333455689999999999999876 45888 99999999999999987655444443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.78  E-value=2.5e-17  Score=138.85  Aligned_cols=216  Identities=13%  Similarity=0.127  Sum_probs=157.7

Q ss_pred             CCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEE
Q 020784           67 PNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV  145 (321)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~  145 (321)
                      ++.|......+.-...+|.+.|.||..+.+.++|++|+. .+++|||+++++.+..+.+  ...+..+++.+++++.+.+
T Consensus        34 ~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~--~~~Vk~~~F~~~gn~~l~~  111 (327)
T KOG0643|consen   34 PTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT--NSPVKRVDFSFGGNLILAS  111 (327)
T ss_pred             ceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec--CCeeEEEeeccCCcEEEEE
Confidence            344444344444556789999999999999999999997 5589999999999999986  7899999999999988877


Q ss_pred             eCCCCCCCCCCcEEEEeCCC-------CcEEEEEe-eCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCc-EEEEEEecc
Q 020784          146 GGGPDPQYPLNKVMIWDDHQ-------SRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADL-KLLHQIETI  213 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~-------~~~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~-~~~~~l~~~  213 (321)
                      ....-.  ....|.++|++.       .+.+..+. ..+.++.+-|.+.  .++.+. ++.|.+||.+++ +.+...+.|
T Consensus       112 tD~~mg--~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h  189 (327)
T KOG0643|consen  112 TDKQMG--YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH  189 (327)
T ss_pred             ehhhcC--cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh
Confidence            643211  236799999873       33333333 3456777788763  344443 479999999987 445555556


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc--------------------------------------------
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--------------------------------------------  249 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~--------------------------------------------  249 (321)
                      ...+.  .+.+.+|..+++ +|+.|.+-++||..+-                                            
T Consensus       190 ~~~In--d~q~s~d~T~Fi-T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GK  266 (327)
T KOG0643|consen  190 SSKIN--DLQFSRDRTYFI-TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGK  266 (327)
T ss_pred             ccccc--cccccCCcceEE-ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccc
Confidence            55444  444445557777 5899998888874310                                            


Q ss_pred             ------------ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          250 ------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       250 ------------~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                                  .+-.+++|=++|++|||+|+|+..+||++||. |||--+..
T Consensus       267 FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~-VR~h~Fd~  318 (327)
T KOG0643|consen  267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY-VRLHHFDS  318 (327)
T ss_pred             hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce-EEEEEecc
Confidence                        12245789999999999999999999999999 99875543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.78  E-value=5.3e-17  Score=144.83  Aligned_cols=201  Identities=13%  Similarity=0.155  Sum_probs=152.6

Q ss_pred             CcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ....+.|.++|+.+..+|.|.||+++++++ ..+.|..++..+...... .+-.+...++++++.++.+..       .|
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt-------~d  368 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT-------PD  368 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC-------CC
Confidence            344578999999999999999999999977 457888888766554420 012355666677776665544       68


Q ss_pred             CcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEECC-EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEE
Q 020784          156 NKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVLEQ-KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~~~-~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      +.|+|||+..+..+..|..+ ++|.++.|..++  ++++.++ .|++||+++.+.++++...... .+.+++++..|.+|
T Consensus       369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L  447 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYL  447 (506)
T ss_pred             ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeE
Confidence            99999999999888888765 489999998775  4444554 6999999999988888765443 56777778888999


Q ss_pred             EeecCCCCcEEEEeeCCc---ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          232 VCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~---~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      ++ ++.|=.|++.+-.++   .+..+..|.+..+++.|..+.++++++|.|.. .||+.+
T Consensus       448 ~~-~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~-l~~~a~  505 (506)
T KOG0289|consen  448 GI-AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI-LRLYAL  505 (506)
T ss_pred             Ee-ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh-eEEeec
Confidence            86 555544555543333   35577889999999999999999999999998 888754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.78  E-value=9.4e-18  Score=144.11  Aligned_cols=194  Identities=13%  Similarity=0.231  Sum_probs=150.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeee--ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ..+|+|++|+|.|.+|+.|.+ ..+++||+++.++.....-  +|.+.|..|..+..+++.++++       .||.||||
T Consensus       216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-------kDG~Iklw  288 (430)
T KOG0640|consen  216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-------KDGAIKLW  288 (430)
T ss_pred             cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-------cCCcEEee
Confidence            358999999999999999999 5688999999877554332  1678899999999999998888       78999999


Q ss_pred             eCCCCcEEEEEee---CCceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccC----CCCce-EEEeeCCCceE
Q 020784          162 DDHQSRCIGELSF---RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA----NPKGL-CAVSQGVGSLV  230 (321)
Q Consensus       162 D~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~----~~~~~-~~~s~~~d~~~  230 (321)
                      |-..++|+.++.-   ..+|.+..|..+..++.+   |..+++|.+.+++.++.+.+..    +.... ..|+..  ..+
T Consensus       289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht--Edy  366 (430)
T KOG0640|consen  289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT--EDY  366 (430)
T ss_pred             ccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc--cce
Confidence            9999999887753   347999999887655543   3599999999999999887642    11122 223333  344


Q ss_pred             EEeecCCCCcEEEEeeCCcceE--EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          231 LVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~~--~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      +.+.....+.++-||..+....  .-.+|++.|+++.-||.+.-|+|||.|.. +|.|--
T Consensus       367 Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r-aRFWyr  425 (430)
T KOG0640|consen  367 VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR-ARFWYR  425 (430)
T ss_pred             EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce-eeeeee
Confidence            5444556667777998876543  34589999999999999999999999999 999953

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.77  E-value=4.4e-17  Score=155.28  Aligned_cols=221  Identities=14%  Similarity=0.174  Sum_probs=161.9

Q ss_pred             CeEEEEEcCC-----CCEEEEEcC-CcEEEEEecCCce-eEEeeee----cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           87 TLLHISFNQD-----HGCFAAGTD-HGFRIYNCDPFRE-IFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        87 ~V~~v~fs~d-----g~~lasg~~-~gv~vw~~~~~~~-~~~~~~~----~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      +|...+|..+     .+.+++--+ ...+.|++..... .+.....    .+..+.++++++.+|...+..       +.
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-------S~  469 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY-------SK  469 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec-------cC
Confidence            6777776642     233333333 4467999865432 2222210    135678888899998776665       55


Q ss_pred             CcEEEEeCCCCcEEEEE----eeCCceeEEEEeCC-e-EEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCc
Q 020784          156 NKVMIWDDHQSRCIGEL----SFRSEVRSVKLRRD-R-IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~----~~~~~v~~v~~~~~-~-~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                      |+|-++|++.|-....+    .+..+|++++...- + ++.+ .+|.+++||+.+..++.++....... .+..+-  ..
T Consensus       470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~-~iv~hr--~s  546 (910)
T KOG1539|consen  470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT-GIVYHR--VS  546 (910)
T ss_pred             CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc-eeeeee--hh
Confidence            99999999999888877    45668999998753 2 3333 46899999999988888887653322 222222  22


Q ss_pred             eEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEE
Q 020784          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSG  307 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~  307 (321)
                      .++|+ +..|-.|+++|..+.. ...|.+|.+.|+.++|||||++|++++.|++ ||+||+.+|.++..+........++
T Consensus       547 ~l~a~-~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~vd~~~~sls  624 (910)
T KOG1539|consen  547 DLLAI-ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLLVDSPCTSLS  624 (910)
T ss_pred             hhhhh-hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEecCCcceeeE
Confidence            45553 6778889999888766 4589999999999999999999999999999 9999999999999886655555679


Q ss_pred             EeecCceEEEee
Q 020784          308 LWLSSAWLRVLR  319 (321)
Q Consensus       308 ~s~d~~~la~~~  319 (321)
                      |+++|.|||++-
T Consensus       625 ~SPngD~LAT~H  636 (910)
T KOG1539|consen  625 FSPNGDFLATVH  636 (910)
T ss_pred             ECCCCCEEEEEE
Confidence            999999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=3.2e-17  Score=156.58  Aligned_cols=199  Identities=14%  Similarity=0.145  Sum_probs=153.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCC-CeEEEEeCCCCCCCCCCcE
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~sg~~~~~~~d~~v  158 (321)
                      ...+|.+.|..++||.++-+|.++.|++||||+.....++....  |..=|++|++.|.. ++++.++       -|++|
T Consensus       364 ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGS-------LD~Kv  434 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGS-------LDGKV  434 (712)
T ss_pred             hhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecc-------cccce
Confidence            34789999999999999988888888999999999887776655  68889999999854 5554444       68999


Q ss_pred             EEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEE-ECCEEEEEEcCCcEEEEEEeccCC------CCceEEEeeCCCc-
Q 020784          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVV-LEQKIFVYNFADLKLLHQIETIAN------PKGLCAVSQGVGS-  228 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~I~iwd~~~~~~~~~l~~~~~------~~~~~~~s~~~d~-  228 (321)
                      |||++...+.+.-.+.+.-|+++++.|++  .+++ ..|.+++|++...++...+.-+..      ...+..|.+.+.. 
T Consensus       435 RiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~  514 (712)
T KOG0283|consen  435 RLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP  514 (712)
T ss_pred             EEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence            99999999888877888899999999875  3343 368999999998888776643221      1134555443222 


Q ss_pred             -eEEEeecCCCCcEEEEeeCCcc-eEEeeccccc--eeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          229 -LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       229 -~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~--V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                       .+|+  .+.|..|+|+|..... +..|+|+.+.  -....|+.||++++++|+|.. |.||++..
T Consensus       515 ~~vLV--TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~-VYiW~~~~  577 (712)
T KOG0283|consen  515 DEVLV--TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW-VYIWKNDS  577 (712)
T ss_pred             CeEEE--ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce-EEEEeCCC
Confidence             4666  4889999999987655 5578876543  456789999999999998888 99999854

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.76  E-value=1.8e-17  Score=161.98  Aligned_cols=202  Identities=17%  Similarity=0.140  Sum_probs=148.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEc--C-CcEEEEEecCCc------------eeEEeeeecCCceEEEEEecCCCeEEEEeCCC
Q 020784           85 PPTLLHISFNQDHGCFAAGT--D-HGFRIYNCDPFR------------EIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~--~-~gv~vw~~~~~~------------~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~  149 (321)
                      ...|.+|..+|||..+|+|+  - .+++||+.+...            .+.... +|.+.+.|+.|++++.++|+++   
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGS---   88 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGS---   88 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeecc---
Confidence            34699999999999999999  3 457899875432            111111 1789999999999999998887   


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCce
Q 020784          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                          +|+-|.||+.....       ...+   +.+       ++   ..-+.++.+.+..+.+|...+.-+++  .|++.
T Consensus        89 ----DD~~v~iW~~~~~~-------~~~~---fgs-------~g---~~~~vE~wk~~~~l~~H~~DV~Dv~W--sp~~~  142 (942)
T KOG0973|consen   89 ----DDRLVMIWERAEIG-------SGTV---FGS-------TG---GAKNVESWKVVSILRGHDSDVLDVNW--SPDDS  142 (942)
T ss_pred             ----CcceEEEeeecccC-------Cccc---ccc-------cc---cccccceeeEEEEEecCCCccceecc--CCCcc
Confidence                67999999865410       0010   000       00   01133456677888888776554444  55668


Q ss_pred             EEEeecCCCCcEEEEeeCC-cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc------
Q 020784          230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI------  302 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~-~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~------  302 (321)
                      ++| +++.|++|.||+..+ +.++++++|.+.|-.+.|.|-|+||||-|+|++ |+||++.+-.+.++...-..      
T Consensus       143 ~lv-S~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-ikvwrt~dw~i~k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  143 LLV-SVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-LKVWRTSDWGIEKSITKPFEESPLTT  220 (942)
T ss_pred             EEE-EecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce-EEEEEcccceeeEeeccchhhCCCcc
Confidence            888 699999999999876 447799999999999999999999999999999 99999888766666542222      


Q ss_pred             -ceeEEEeecCceEEEe
Q 020784          303 -SAQSGLWLSSAWLRVL  318 (321)
Q Consensus       303 -~~~~~~s~d~~~la~~  318 (321)
                       -.+++.||||+|||+.
T Consensus       221 ~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASP  237 (942)
T ss_pred             eeeecccCCCcCeecch
Confidence             2344778999999874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=8.2e-18  Score=159.11  Aligned_cols=222  Identities=13%  Similarity=0.184  Sum_probs=156.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEE--eeee--cC--CceEEEEE-ecCCCeEEEEeCCCCCCCCCCcE
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFE--RG--GGIGVVEM-LFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~--~~~~--~~--~~v~~v~~-~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .....|+.++|-..+++++.....||.+.+......  ..+.  ..  -....|.| ....+++|+++       ..|.|
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s-------~nG~i  112 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS-------TNGVI  112 (839)
T ss_pred             cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec-------CCCcE
Confidence            367788899999999999988888887754322111  1110  01  12233444 34578888888       66999


Q ss_pred             EEEeCCC---CcEEEEEee-CCceeEEEEeC---CeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          159 MIWDDHQ---SRCIGELSF-RSEVRSVKLRR---DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       159 ~iWD~~~---~~~~~~~~~-~~~v~~v~~~~---~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      .+||+..   .+.+..|.. ...+.+++||.   ..++.++ |+.|++||++..+...++.+....+.-+.|++..++ .
T Consensus       113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~-~  191 (839)
T KOG0269|consen  113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN-K  191 (839)
T ss_pred             EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-e
Confidence            9999987   333334443 44799999985   4455554 579999999988888888775556667788887654 4


Q ss_pred             EEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE--EEEEeCCCcceeE
Q 020784          231 LVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEECCPSISAQS  306 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~--i~~~~~g~~~~~~  306 (321)
                      ++ ++...|.+..||++.-  ....|.+|.++|.|+.|+|++.+|||||.|++ |||||+.+++.  +.+........++
T Consensus       192 F~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tInTiapv~rV  269 (839)
T KOG0269|consen  192 FA-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTINTIAPVGRV  269 (839)
T ss_pred             EE-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEeecceeeee
Confidence            44 4899999999999863  35688999999999999999999999999999 99999987653  4444443333333


Q ss_pred             EEeecCce-EEE
Q 020784          307 GLWLSSAW-LRV  317 (321)
Q Consensus       307 ~~s~d~~~-la~  317 (321)
                      .+=+.-+| ||.
T Consensus       270 kWRP~~~~hLAt  281 (839)
T KOG0269|consen  270 KWRPARSYHLAT  281 (839)
T ss_pred             eeccCccchhhh
Confidence            33333333 443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=5e-17  Score=140.07  Aligned_cols=215  Identities=10%  Similarity=0.152  Sum_probs=155.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+|+..|..++.......+.+++. .+.+||.+++++++..+.. |.|.+.++.+++.+.++++++|       |++..|
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lTaSG-------D~taHI  216 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGLLLLTASG-------DETAHI  216 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceeeEEeccccceEEEccC-------CcchHH
Confidence            578889999998877777888876 5578999999999888876 8899999999998888887774       467777


Q ss_pred             Ee------CCC-----C-------------------------c----EEEEEeeCC-ceeEEEEe--CCeEEE-EECCEE
Q 020784          161 WD------DHQ-----S-------------------------R----CIGELSFRS-EVRSVKLR--RDRIIV-VLEQKI  196 (321)
Q Consensus       161 WD------~~~-----~-------------------------~----~~~~~~~~~-~v~~v~~~--~~~~~~-~~~~~I  196 (321)
                      |.      +-.     +                         .    .+..+..+. .|.+..|-  .+.++. ..|.+-
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            75      100     0                         0    011122221 23333342  223333 346799


Q ss_pred             EEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECCCCCEEE
Q 020784          197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLA  274 (321)
Q Consensus       197 ~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspdg~~la  274 (321)
                      .+||+++++.++.+.+|.....-|+-++  ...+++ +.+.|-+.++||+...  .+.+|++|...|+++.|..+. .++
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVv-TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV  372 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVV-TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV  372 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCC--cceEEE-EeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence            9999999999999999988766666555  446655 6899999999999853  356899999999999999765 478


Q ss_pred             EEeCCCcEEEEEEcCCCc-EEEEEeCCCcceeEEEe
Q 020784          275 TSSTKGTLVRIFNTLDGT-LLQEECCPSISAQSGLW  309 (321)
Q Consensus       275 s~S~Dgt~IrIWd~~tg~-~i~~~~~g~~~~~~~~s  309 (321)
                      +||+|.+ |||||+++.. .+.+++.......+.++
T Consensus       373 SgSDDrT-vKvWdLrNMRsplATIRtdS~~NRvavs  407 (481)
T KOG0300|consen  373 SGSDDRT-VKVWDLRNMRSPLATIRTDSPANRVAVS  407 (481)
T ss_pred             ecCCCce-EEEeeeccccCcceeeecCCccceeEee
Confidence            9999999 9999999754 45666544333333433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.76  E-value=1.1e-17  Score=151.52  Aligned_cols=223  Identities=9%  Similarity=0.158  Sum_probs=170.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ..+-|++|-..|||+.|++|+. .++.|||+.........++. ..-....++++++.+..+.+.       .||.|+||
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFscc-------sdGnI~vw  536 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCC-------SDGNIAVW  536 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeec-------cCCcEEEE
Confidence            3468999999999999999999 66889999765433333331 012344567788887666555       68999999


Q ss_pred             eCCCCcEEEEEeeCC-ceeEEEEeCC--eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          162 DDHQSRCIGELSFRS-EVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       162 D~~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      |+++...++.|+.+. .+.++.++++  ++..+ .|++||.||++.+..++..+..   ..++++...+.+.++|+ |=.
T Consensus       537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---SQIfSLg~cP~~dWlav-GMe  612 (705)
T KOG0639|consen  537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---SQIFSLGYCPTGDWLAV-GME  612 (705)
T ss_pred             EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---hhheecccCCCccceee-ecc
Confidence            999999999998765 6888998865  45554 4689999999987765544332   23445555556678885 999


Q ss_pred             CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEE
Q 020784          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                      ++.|.|..........+..|.+-|.++.|.+-|++|++.+.|+- +..|.+.-|.-+.+.+.......--+|+|.+|+..
T Consensus       613 ns~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT  691 (705)
T KOG0639|consen  613 NSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT  691 (705)
T ss_pred             cCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence            99999977666667789999999999999999999999999998 99999999998887765444333366899999875


Q ss_pred             e
Q 020784          318 L  318 (321)
Q Consensus       318 ~  318 (321)
                      -
T Consensus       692 G  692 (705)
T KOG0639|consen  692 G  692 (705)
T ss_pred             c
Confidence            3

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.76  E-value=4e-17  Score=136.54  Aligned_cols=221  Identities=12%  Similarity=0.080  Sum_probs=161.4

Q ss_pred             CCCCCCeEEEEEcC---CCCEEEEEcCCcEE-EEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQ---DHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~---dg~~lasg~~~gv~-vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ++|..+|..++|+|   +|-+|++++.|+-- +-+=+++..+-..+. |.+.|-......+.-.-+.++       .|-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaa-------adft   82 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAA-------ADFT   82 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhc-------ccch
Confidence            57788999999985   89999999988743 666678877766665 566665544433322223333       5788


Q ss_pred             EEEEeCCCCcEEEEEeeCCceeEEEEeCC---------------------------------------------eEEE-E
Q 020784          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD---------------------------------------------RIIV-V  191 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------------------------------------------~~~~-~  191 (321)
                      .||||.-+|..+..|++...|.+++|+.+                                             .++. +
T Consensus        83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence            99999988888888777777777777654                                             1222 2


Q ss_pred             ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCC
Q 020784          192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDG  270 (321)
Q Consensus       192 ~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg  270 (321)
                      .+++||+||.+++..++++.... ++..+-++.++  .+|.+  ...+.|..||...- .++.++ -.-.|.+..++|+-
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG--~ilTi--a~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDG--RILTI--AYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKK  236 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecCC-CCcceeeccCC--CEEEE--ecCceeEEeccccccceeecc-CccccccccccCCC
Confidence            34699999999999999998753 45566666654  66654  45568999997643 333332 23458999999999


Q ss_pred             CEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EEeecCceEEE
Q 020784          271 QLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GLWLSSAWLRV  317 (321)
Q Consensus       271 ~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~s~d~~~la~  317 (321)
                      ..|+.|++|.. ++.||+.||+.+..+..||...+.  .|++||..-|.
T Consensus       237 ~~fVaGged~~-~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  237 EFFVAGGEDFK-VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             ceEEecCcceE-EEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence            99999999999 999999999999988778876654  77888876553

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.76  E-value=1.3e-17  Score=143.91  Aligned_cols=207  Identities=15%  Similarity=0.194  Sum_probs=164.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ++...|.|++|+.|...||+|+.|| |+||.+.++.++...+-.|..+|.++.++.++..+..++       .|.++||-
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s-------fD~tvRiH  333 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS-------FDQTVRIH  333 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc-------ccceEEEe
Confidence            5678999999999999999999877 889999999887555433788899999888877776665       78999999


Q ss_pred             eCCCCcEEEEEeeCC-ceeEEEEeCC--eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEe--eCCCceEEEeec
Q 020784          162 DDHQSRCIGELSFRS-EVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVS--QGVGSLVLVCPG  235 (321)
Q Consensus       162 D~~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s--~~~d~~~la~sG  235 (321)
                      -++.|+++.++..++ .|....|..+  .++.+ +|++|++|+..+.+++.+|+.......+..+.  |.....+++  +
T Consensus       334 GlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV--C  411 (508)
T KOG0275|consen  334 GLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV--C  411 (508)
T ss_pred             ccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE--E
Confidence            999999999998776 5777888765  34444 56899999999999999998755444333332  322234555  4


Q ss_pred             CCCCcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          236 LQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       236 s~dg~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      ...++|.|.+++...+..|..   ..+.--+.+.||.|.++-..++|+. +.-|.+.+|++-+++..
T Consensus       412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V  477 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV  477 (508)
T ss_pred             cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec
Confidence            677799999988776776653   3455677889999999999999999 99999999999988853

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.75  E-value=1.2e-16  Score=144.98  Aligned_cols=222  Identities=14%  Similarity=0.140  Sum_probs=161.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCce---eEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE---IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~---~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|..-|..++++...+++.+|+.+.|+|||+...+-   +....+. .+.-++.+...++++.+++.+       .-.+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG-------east  488 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG-------EAST  488 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc-------ccce
Confidence            4577788889999999999999999999999853321   1111110 244577888889999888776       3478


Q ss_pred             EEEEeCCCCcEEEEEeeCC---ceeEEEEeCCe---EEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEE
Q 020784          158 VMIWDDHQSRCIGELSFRS---EVRSVKLRRDR---IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~---~v~~v~~~~~~---~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      |-|||+.........+...   .-++++.+++.   +.+++++.|+|||+.+..+++.|++|.....++.++.++  .-|
T Consensus       489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG--tkl  566 (705)
T KOG0639|consen  489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG--TKL  566 (705)
T ss_pred             eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC--cee
Confidence            9999998665433333322   34556777763   445578999999999999999999998888888888765  445


Q ss_pred             EeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EEe
Q 020784          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GLW  309 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~s  309 (321)
                      = +|+-|.+||-||+..+....-....+.|.++..+|++.+||.|-+.+. |-|-.+.. ..-+.+ .-|+.+++  .|+
T Consensus       567 W-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~sk-p~kyql-hlheScVLSlKFa  642 (705)
T KOG0639|consen  567 W-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSK-PEKYQL-HLHESCVLSLKFA  642 (705)
T ss_pred             e-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCC-ccceee-cccccEEEEEEec
Confidence            4 599999999999876543333334678999999999999999988887 65555443 333444 34666665  667


Q ss_pred             ecCceEE
Q 020784          310 LSSAWLR  316 (321)
Q Consensus       310 ~d~~~la  316 (321)
                      .-|+|++
T Consensus       643 ~cGkwfv  649 (705)
T KOG0639|consen  643 YCGKWFV  649 (705)
T ss_pred             ccCceee
Confidence            8888875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.1e-17  Score=145.95  Aligned_cols=225  Identities=14%  Similarity=0.174  Sum_probs=174.7

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEecCCceeEEeeee--cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           84 PPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~-~lasg~~~g-v~vw~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..-+|.+++|.|+|. .+++++.+. ...||+.+.+........  ....+...+++++++.+++.+       ..|.|.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-------~~G~I~  328 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-------NNGHIH  328 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-------cCceEE
Confidence            445899999999998 777888766 459999887653222211  123456678889999999988       668999


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      +.-..+++.+..++..+.|..++|+.+  .++++ ..+.|.+||+++..+++++..... +.-..++...++.++|+ |+
T Consensus       329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~-GS  406 (514)
T KOG2055|consen  329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLAT-GS  406 (514)
T ss_pred             eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEe-cc
Confidence            999999999999999999999999754  34443 468999999999999999876433 33344444445589995 99


Q ss_pred             CCCcEEEEeeCC-------cceEEeeccccceeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCcEEEEEeCCCc----c
Q 020784          237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEECCPSI----S  303 (321)
Q Consensus       237 ~dg~V~i~d~~~-------~~~~~l~~H~~~V~~vafspdg~~las~S~--Dgt~IrIWd~~tg~~i~~~~~g~~----~  303 (321)
                      ..|.|.|||.+.       ++++++..-...|+++.|++|+++||.||.  +.. +|+=.+.+...+..+...+.    .
T Consensus       407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccce
Confidence            999999998542       456677778889999999999999998876  567 99999999888887754433    2


Q ss_pred             eeEEEeecCceEEEe
Q 020784          304 AQSGLWLSSAWLRVL  318 (321)
Q Consensus       304 ~~~~~s~d~~~la~~  318 (321)
                      ..+.||+.|-|||+.
T Consensus       486 tc~aFSP~sG~lAvG  500 (514)
T KOG2055|consen  486 TCMAFSPNSGYLAVG  500 (514)
T ss_pred             EEEEecCCCceEEee
Confidence            345888999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=8.6e-18  Score=158.95  Aligned_cols=214  Identities=13%  Similarity=0.123  Sum_probs=149.9

Q ss_pred             CeEEEEEcC-CCCEEEEEcCCc-EEEEEecCC---ceeEEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCcEEE
Q 020784           87 TLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPF---REIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        87 ~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~---~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+..|.|++ +.++||+++..| |.+||+...   +.+....- |...+..++|+. .+++++.++       .|++||+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGS-------QDg~vK~  160 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGS-------QDGTVKC  160 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecC-------CCceEEE
Confidence            445567775 567999999977 559999762   22222221 567788888865 455554444       7899999


Q ss_pred             EeCCCCcEEEEEeeCC-ceeEEEEeC---CeEEEEEC-CEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          161 WDDHQSRCIGELSFRS-EVRSVKLRR---DRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~---~~~~~~~~-~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      ||++..+.+.++.... .|..|.|++   +.++.+.+ |.+.+||++. .+...++..|.+++.++.++|  ++.+|| +
T Consensus       161 ~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP--nr~~lA-T  237 (839)
T KOG0269|consen  161 WDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP--NREWLA-T  237 (839)
T ss_pred             EeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC--CCceee-e
Confidence            9999888777766554 799999986   35666655 6999999976 455667788888877777666  668999 5


Q ss_pred             cCCCCcEEEEeeCCcceE-Eeec-cccceeEEEECCCC-CEEEEEeC-CCcEEEEEEcCCC-cEEEEEeCCCcceeEEEe
Q 020784          235 GLQKGQVRVEHYASKRTK-FIMA-HDSRIACFALTQDG-QLLATSST-KGTLVRIFNTLDG-TLLQEECCPSISAQSGLW  309 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~-~l~~-H~~~V~~vafspdg-~~las~S~-Dgt~IrIWd~~tg-~~i~~~~~g~~~~~~~~s  309 (321)
                      |+-|++|+||++.+...+ ...- -..+|.+|+|-|+. .+|||+|. +.+.|+|||++.- -..++|. .|......+.
T Consensus       238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~  316 (839)
T KOG0269|consen  238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-EHTDSVTGIA  316 (839)
T ss_pred             cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-ccCcccccee
Confidence            999999999999854432 2222 24679999999986 46888865 3344999999864 3455664 4444444444


Q ss_pred             ecC
Q 020784          310 LSS  312 (321)
Q Consensus       310 ~d~  312 (321)
                      |++
T Consensus       317 W~~  319 (839)
T KOG0269|consen  317 WDS  319 (839)
T ss_pred             ccC
Confidence            443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.74  E-value=3.2e-16  Score=134.27  Aligned_cols=195  Identities=14%  Similarity=0.124  Sum_probs=144.3

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcC-CcEEEEEecCCceeEEe-eeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasg~~-~gv~vw~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ...+..|.+++||| ...+|++|+- ++||+|+++..+...-+ ...|.+++..++|+-++..+++++       .|+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-------~Dk~~   96 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-------CDKQA   96 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------cCCce
Confidence            34456899999999 4455656665 55999999774322111 112689999999999998887777       68999


Q ss_pred             EEEeCCCCcEEEEEeeCCceeEEEEeCCeE--EEE---ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~---~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      ++||+.+++....-.+...|..+.|-+...  .++   .|++||+||++....+.+++....   +.+...  ...++++
T Consensus        97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---vYa~Dv--~~pm~vV  171 (347)
T KOG0647|consen   97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---VYAADV--LYPMAVV  171 (347)
T ss_pred             EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---eeehhc--cCceeEE
Confidence            999999998776667778999999876543  333   368999999999999988876532   333222  2244553


Q ss_pred             ecCCCCcEEEEeeCCcceEEeecc----ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~H----~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                       +..+..|.++++++.+ ..++.|    +-.++||+...|....|-||-.|. +-|..+..+
T Consensus       172 -ata~r~i~vynL~n~~-te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~  230 (347)
T KOG0647|consen  172 -ATAERHIAVYNLENPP-TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP  230 (347)
T ss_pred             -EecCCcEEEEEcCCCc-chhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC
Confidence             7888899999986543 333333    345899999999888899999999 999999886

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=1e-15  Score=131.91  Aligned_cols=221  Identities=14%  Similarity=0.136  Sum_probs=153.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCC--eEEEEeCCCCCCCCCCc
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNK  157 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~~~sg~~~~~~~d~~  157 (321)
                      ...|.+.|++++.+  |.++|+|+. ++|+|||+.........-. |.+.+.++.+.+...  .++.++       .||.
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~s-------dDG~  108 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGS-------DDGH  108 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeec-------CCCc
Confidence            46788999999987  899999986 6799999987765544443 678888888765442  455554       6899


Q ss_pred             EEEEeCCCCcEEEEEeeC-CceeEEEEeCCe-EE--EEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          158 VMIWDDHQSRCIGELSFR-SEVRSVKLRRDR-II--VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~-~~--~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      |.+|+...-.++..++.+ +.|+.+++||.. ++  +..|+.+|+||+-.|+.-..+..... ...+.+++.+  ..+++
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~G--d~F~v  185 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQG--DHFVV  185 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCC--CEEEE
Confidence            999999998888888765 479999999864 33  34567999999977765544443322 2345666555  44443


Q ss_pred             ecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEe----
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLW----  309 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s----  309 (321)
                      .+.  ..|.||.+.+..+...-.-...+.|+.|- ++.+|++|.+|+. |++||..++.+...+ .+|.+.+-.+.    
T Consensus       186 ~~~--~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  186 SGR--NKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEF-LAHENRVKDIASYTN  260 (362)
T ss_pred             Eec--cEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceee-ecchhheeeeEEEec
Confidence            233  46778876554332111112446777775 4667888999998 999999998888777 46665444332    


Q ss_pred             ecCceEEEee
Q 020784          310 LSSAWLRVLR  319 (321)
Q Consensus       310 ~d~~~la~~~  319 (321)
                      +++.||+.|+
T Consensus       261 ~~~~~lvTaS  270 (362)
T KOG0294|consen  261 PEHEYLVTAS  270 (362)
T ss_pred             CCceEEEEec
Confidence            4557887764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.5e-15  Score=146.32  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=163.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc-eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ....|...-+.|+|.++|.+|.+++.++ |++|+..... .--.... ++..+..+  ...++.+++++       .+++
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~i--a~~s~~f~~~s-------~~~t   77 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSI--ACYSNHFLTGS-------EQNT   77 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEE--eecccceEEee-------ccce
Confidence            3456778899999999999988776655 8899875542 1111111 13334443  34566777777       6899


Q ss_pred             EEEEeCCCCcEEEE-EeeCCceeEEEEeCC--eEEEEECC-EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          158 VMIWDDHQSRCIGE-LSFRSEVRSVKLRRD--RIIVVLEQ-KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       158 v~iWD~~~~~~~~~-~~~~~~v~~v~~~~~--~~~~~~~~-~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      |.++....++.-.. ..+.-++..++++.+  .++.++++ .|++-++.+.....++.+|..++..+.+.  +.+.+||+
T Consensus        78 v~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~--p~~~fLAv  155 (933)
T KOG1274|consen   78 VLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD--PKGNFLAV  155 (933)
T ss_pred             EEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc--CCCCEEEE
Confidence            99999877654322 123345666777665  56666665 89999999988888999998876665554  55689984


Q ss_pred             ecCCCCcEEEEeeCCcce-EEeec-------c-ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc-
Q 020784          234 PGLQKGQVRVEHYASKRT-KFIMA-------H-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS-  303 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~-~~l~~-------H-~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~-  303 (321)
                       .+.||+|+||+++.+.+ +++.+       - .+.+..++|+|+|..||..+.|++ |++++..++.....++..+.. 
T Consensus       156 -ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss  233 (933)
T KOG1274|consen  156 -SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSS  233 (933)
T ss_pred             -EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeeccccccc
Confidence             88899999999987653 33322       1 456788999999888888888999 999999999998888654433 


Q ss_pred             --eeEEEeecCceEEEee
Q 020784          304 --AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       304 --~~~~~s~d~~~la~~~  319 (321)
                        ..+++++.|+|||...
T Consensus       234 ~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  234 KFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             ceEEEEEcCCCcEEeeec
Confidence              3458899999998753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.72  E-value=2.2e-16  Score=141.57  Aligned_cols=198  Identities=15%  Similarity=0.184  Sum_probs=144.1

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcC-CcEEEEEecCCce-------eEEeeeecCCceEEEEEec-CCCeEEEEeCCCCC
Q 020784           82 SSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFRE-------IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDP  151 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasg~~-~gv~vw~~~~~~~-------~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~  151 (321)
                      .+|...=+.++|++... +|++|++ .++.+||+.....       ...... |...|..|+|++ +.+++++++     
T Consensus       174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~-----  247 (422)
T KOG0264|consen  174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVG-----  247 (422)
T ss_pred             EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeec-----
Confidence            45655677899998532 4555555 6689999865432       111222 677888888865 566777777     


Q ss_pred             CCCCCcEEEEeCCC--CcEEEEEe-eCCceeEEEEeCC---eEEEEE-CCEEEEEEcCCc-EEEEEEeccCCCCceEEEe
Q 020784          152 QYPLNKVMIWDDHQ--SRCIGELS-FRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVS  223 (321)
Q Consensus       152 ~~~d~~v~iWD~~~--~~~~~~~~-~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s  223 (321)
                        +|+.+.|||.++  .+...... +...|.++.|++.   .++.++ |++|++||+|+. +.++++.+|...+..+-++
T Consensus       248 --dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS  325 (422)
T KOG0264|consen  248 --DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS  325 (422)
T ss_pred             --CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence              679999999995  34433333 4568999999874   233343 679999999874 5678889998888888888


Q ss_pred             eCCCceEEEeecCCCCcEEEEeeCCc---------------ceEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEEE
Q 020784          224 QGVGSLVLVCPGLQKGQVRVEHYASK---------------RTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFN  287 (321)
Q Consensus       224 ~~~d~~~la~sGs~dg~V~i~d~~~~---------------~~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd  287 (321)
                      |+.+ .+|| |++.|+.+.|||+..-               .+.+-.||+..|..+.|+|+.. .++|+++|+. ++||+
T Consensus       326 Ph~e-tvLA-SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~  402 (422)
T KOG0264|consen  326 PHNE-TVLA-SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQ  402 (422)
T ss_pred             CCCC-ceeE-ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce-EEEee
Confidence            8754 5677 4668999999997521               1245678999999999999865 6888999998 99999


Q ss_pred             cCC
Q 020784          288 TLD  290 (321)
Q Consensus       288 ~~t  290 (321)
                      ...
T Consensus       403 ~s~  405 (422)
T KOG0264|consen  403 MAE  405 (422)
T ss_pred             ccc
Confidence            763

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.72  E-value=5e-16  Score=136.56  Aligned_cols=196  Identities=10%  Similarity=0.148  Sum_probs=132.9

Q ss_pred             CCCCCeEEEEEcCCC--CEEEEEcCCc-EEEEEecC----------------CceeEEeeeecCCceEEEEEecCCCeEE
Q 020784           83 SPPPTLLHISFNQDH--GCFAAGTDHG-FRIYNCDP----------------FREIFRRDFERGGGIGVVEMLFRCNILA  143 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg--~~lasg~~~g-v~vw~~~~----------------~~~~~~~~~~~~~~v~~v~~~~~~~~~~  143 (321)
                      .|.+.|+.+.-++-|  .+.|+=++.| |.||++..                .+.++.... |++.-..++|++..... 
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~-  226 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGR-  226 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccc-
Confidence            444556666666544  3455555655 78998742                123333333 66667777887733222 


Q ss_pred             EEeCCCCCCCCCCcEEEEeCCCCcEEEE----EeeCCceeEEEEeCC---eEEEEE-CCEEEEEEcCCc---EEEEEEec
Q 020784          144 LVGGGPDPQYPLNKVMIWDDHQSRCIGE----LSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADL---KLLHQIET  212 (321)
Q Consensus       144 ~~sg~~~~~~~d~~v~iWD~~~~~~~~~----~~~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~---~~~~~l~~  212 (321)
                      +++|.     .-+.|++|...+|.....    ..+...|-.++|++.   .++.|+ |++|+|||++.+   .++.+ +.
T Consensus       227 LlsGD-----c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA  300 (440)
T KOG0302|consen  227 LLSGD-----CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA  300 (440)
T ss_pred             cccCc-----cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence            22222     348899999988875432    224457888999763   455564 679999999887   33333 56


Q ss_pred             cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC----cceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEE
Q 020784          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       213 ~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~----~~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd  287 (321)
                      |...+.+++++-  .-.+|| +|+.||+++|||++.    .++.+|+.|+.+|+||.|+|. ...||.+|.|.. |.|||
T Consensus       301 h~sDVNVISWnr--~~~lLa-sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiWD  376 (440)
T KOG0302|consen  301 HNSDVNVISWNR--REPLLA-SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIWD  376 (440)
T ss_pred             cCCceeeEEccC--Ccceee-ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEEE
Confidence            666665555554  446777 699999999999875    345699999999999999986 456777778888 99999


Q ss_pred             cCC
Q 020784          288 TLD  290 (321)
Q Consensus       288 ~~t  290 (321)
                      +.-
T Consensus       377 lsv  379 (440)
T KOG0302|consen  377 LSV  379 (440)
T ss_pred             eec
Confidence            874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=2.3e-16  Score=146.91  Aligned_cols=210  Identities=9%  Similarity=0.131  Sum_probs=155.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeee-cCCceEEEEE-ecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFE-RGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~-~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .|..=|+.+....+|+.|++++.| +|++|+............+ |..-|.+++. ..+..+++  +||     -|+.|.
T Consensus        71 ~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lva--SgG-----LD~~If  143 (735)
T KOG0308|consen   71 HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVA--SGG-----LDRKIF  143 (735)
T ss_pred             hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEE--ecC-----CCccEE
Confidence            466678888888899888877765 5889998766411111111 6777888887 44444444  444     579999


Q ss_pred             EEeCCCC--cEEEEEe----------eCCceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEee
Q 020784          160 IWDDHQS--RCIGELS----------FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       160 iWD~~~~--~~~~~~~----------~~~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~  224 (321)
                      |||++++  +.+..+.          ....|++++.++....++.   .+-+++||.++.+.+.++.+|...+.++.++.
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d  223 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND  223 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence            9999987  3333322          1236899999987654443   36899999999999999999987777777766


Q ss_pred             CCCceEEEeecCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC-CcEEEEEeCCCc
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEECCPSI  302 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t-g~~i~~~~~g~~  302 (321)
                      +  |..++ |++.||+|++||+... ++.++..|+..|+++.-+|+-.++.+|+.||. |..=|+++ .++..-++..+.
T Consensus       224 D--Gt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~-i~~Tdl~n~~~~tlick~daP  299 (735)
T KOG0308|consen  224 D--GTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN-IYRTDLRNPAKSTLICKEDAP  299 (735)
T ss_pred             C--CCeEe-ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc-EEecccCCchhheEeecCCCc
Confidence            4  45565 6999999999999764 58899999999999999999999999999999 88889998 444444544444


Q ss_pred             c
Q 020784          303 S  303 (321)
Q Consensus       303 ~  303 (321)
                      .
T Consensus       300 v  300 (735)
T KOG0308|consen  300 V  300 (735)
T ss_pred             h
Confidence            3

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=2.4e-17  Score=148.15  Aligned_cols=210  Identities=16%  Similarity=0.191  Sum_probs=169.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      =+.+.++.+|++|+.|+.+| +..+|+.+.+..+....  ...|..+.|..+...+|++-        .+-+.|||- .|
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--~Etv~Dv~~LHneq~~AVAQ--------K~y~yvYD~-~G  200 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--METVRDVTFLHNEQFFAVAQ--------KKYVYVYDN-NG  200 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh--hhhhhhhhhhcchHHHHhhh--------hceEEEecC-CC
Confidence            45789999999999999977 67999999988777765  56778888888887777765        467999985 45


Q ss_pred             cEEEEEeeCCceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE
Q 020784          167 RCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (321)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i  243 (321)
                      ..+..+.....|..+.|-+.++++++   .+.++.-|+..|+++..|.+......+++.+|  -+.++- .|..+|+|.+
T Consensus       201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP--~NaVih-~GhsnGtVSl  277 (545)
T KOG1272|consen  201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP--YNAVIH-LGHSNGTVSL  277 (545)
T ss_pred             cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC--ccceEE-EcCCCceEEe
Confidence            56667777888999999987655553   26999999999999999988777666666554  446666 5999999999


Q ss_pred             EeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecC
Q 020784          244 EHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       244 ~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                      |.-+.+. +..+..|.++|++||+.++|+|+||.+.|.. ++|||++....+++++.-+....+++|--|
T Consensus       278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRTPHPASNLSLSQKG  346 (545)
T ss_pred             cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeecCCCcccccccccc
Confidence            9877654 6678899999999999999999999999999 999999999988888765555555555443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=3.8e-15  Score=128.42  Aligned_cols=194  Identities=11%  Similarity=0.158  Sum_probs=148.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+|...|++++.+|-+..|++|+. ++||+||+...++.....   ..+-.++++.+.+-.+|++.++       +.|++
T Consensus        97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLifA~~~~~-------~~IkL  166 (311)
T KOG1446|consen   97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLIFALANGS-------ELIKL  166 (311)
T ss_pred             CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcEEEEecCC-------CeEEE
Confidence            578899999999999999998887 579999998776655444   3455667788888888877744       58999


Q ss_pred             EeCCCCc--EEEEEeeC----CceeEEEEeCCe--EEEEEC-CEEEEEEcCCcEEEEEEeccCCCCc-eEEEeeCCCceE
Q 020784          161 WDDHQSR--CIGELSFR----SEVRSVKLRRDR--IIVVLE-QKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVGSLV  230 (321)
Q Consensus       161 WD~~~~~--~~~~~~~~----~~v~~v~~~~~~--~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~-~~~~s~~~d~~~  230 (321)
                      +|++..+  .-.++...    .+...+.|++++  +++++. +.+++.|.-+|..++++..+.+... ....++.||+++
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence            9998643  33344332    368889998864  555554 5899999999999999988766542 233445556688


Q ss_pred             EEeecCCCCcEEEEeeCCcc-eEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          231 LVCPGLQKGQVRVEHYASKR-TKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~-~~~l~~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      +. +|+.||+|.+|+..++. ...+++ |.+++.|+.|+|....+||++..   +.+|=..
T Consensus       247 vl-~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~---l~fw~p~  303 (311)
T KOG1446|consen  247 VL-SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN---LVFWLPD  303 (311)
T ss_pred             EE-EecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce---EEEEecc
Confidence            87 59999999999998765 567777 89999999999999999988643   6678543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.1e-15  Score=127.82  Aligned_cols=209  Identities=16%  Similarity=0.220  Sum_probs=137.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCce----eEEeeeecCCceEEEEEecC--CCeEEEEeCCCCC
Q 020784           79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFR--CNILALVGGGPDP  151 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~----~~~~~~~~~~~v~~v~~~~~--~~~~~~~sg~~~~  151 (321)
                      ++...|..-|.|+.|++-|+++|+++. ..++|||.+....    ...+.. |++.|-.|.|.+.  +..+|+++     
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS-----   80 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCS-----   80 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEe-----
Confidence            344567789999999999999998887 4589999644332    222333 7888888888653  66778887     


Q ss_pred             CCCCCcEEEEeCCC-------CcEEEE--E-eeCCceeEEEEeCCe----EEEE-ECCEEEEEEcCC------cEE----
Q 020784          152 QYPLNKVMIWDDHQ-------SRCIGE--L-SFRSEVRSVKLRRDR----IIVV-LEQKIFVYNFAD------LKL----  206 (321)
Q Consensus       152 ~~~d~~v~iWD~~~-------~~~~~~--~-~~~~~v~~v~~~~~~----~~~~-~~~~I~iwd~~~------~~~----  206 (321)
                        .|++++||.-+.       .+.+..  + .-.+.|+.|+|.+.+    ++.+ .++.+|||+..+      ..+    
T Consensus        81 --~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   81 --YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             --cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence              789999997521       122222  1 224578888887753    2333 346777776421      111    


Q ss_pred             ---------------------------------------------------------EEEEeccCCCCceEEEeeCCC--
Q 020784          207 ---------------------------------------------------------LHQIETIANPKGLCAVSQGVG--  227 (321)
Q Consensus       207 ---------------------------------------------------------~~~l~~~~~~~~~~~~s~~~d--  227 (321)
                                                                               +.++.++..++.-++++|+-.  
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS  238 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence                                                                     111223333444455555432  


Q ss_pred             ceEEEeecCCCCcEEEEeeCCc---------------------ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 020784          228 SLVLVCPGLQKGQVRVEHYASK---------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~~---------------------~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIW  286 (321)
                      -.+|| .++.|| |+||.+...                     .+..+..|++.|..+.|+=.|..|+|.|.||. ||+|
T Consensus       239 y~~lA-vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLW  315 (361)
T KOG2445|consen  239 YHLLA-VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLW  315 (361)
T ss_pred             eeeEE-EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeeh
Confidence            24666 489999 999886521                     12357889999999999999999999999999 9999


Q ss_pred             EcCC---CcEEEEEe
Q 020784          287 NTLD---GTLLQEEC  298 (321)
Q Consensus       287 d~~t---g~~i~~~~  298 (321)
                      ...=   .+|...++
T Consensus       316 kany~n~~kC~sv~~  330 (361)
T KOG2445|consen  316 KANYNNLWKCTSVLK  330 (361)
T ss_pred             hhhhhhhheeeeEEe
Confidence            7542   34544444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.70  E-value=8.3e-16  Score=146.69  Aligned_cols=195  Identities=13%  Similarity=0.103  Sum_probs=158.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEee--eecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRD--FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      ..+++|+.++-|++...|..+| |-+||++.+-......  ..|++.|..+++..-...++.++       .+|-++.||
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-------~~Gilkfw~  521 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-------ADGILKFWD  521 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-------CcceEEEEe
Confidence            6899999999999999998866 6699999885433331  12788999999887777777766       679999999


Q ss_pred             CCCCcEEEEEeeCCceeEEEEeCC--eEEEEECC-EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          163 DHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQ-KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~-~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      ..++..+..+.....+..+..++.  .++++.++ .|+++|+.+.+.++.|.+|.+.+..++||+  |+.+|+ +.+.|+
T Consensus       522 f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~--DgrWli-sasmD~  598 (910)
T KOG1539|consen  522 FKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP--DGRWLI-SASMDS  598 (910)
T ss_pred             cCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC--CCcEEE-EeecCC
Confidence            999998888888888888777754  34555555 999999999999999999988766666665  558888 589999


Q ss_pred             cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +|++||+-++.+.---.-..+++++.|||+|.+|||...|..-|.+|-=.+
T Consensus       599 tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  599 TIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            999999988876644456788999999999999999999954499996444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=6.8e-17  Score=151.93  Aligned_cols=188  Identities=14%  Similarity=0.199  Sum_probs=149.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|..+|.|+.|+.+..+|++|+.+ +|++||++..+.+..... |...+..+.|++-+.+.  ++|.     .|..++
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~f~P~~~~~--a~gS-----tdtd~~  137 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVDFHPYGEFF--ASGS-----TDTDLK  137 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcceeeeccceEEe--cccc-----ccccce
Confidence            47899999999999999999999986 588999998887665554 55567777777777666  4444     678999


Q ss_pred             EEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE--EC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVV--LE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~--~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +||.+...|...+..+. -|..+.|.+++-+++  ++ +.++|||+..++++..|.+|...+....+++.  ..+++ +|
T Consensus       138 iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~--e~Lla-~G  214 (825)
T KOG0267|consen  138 IWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL--EVLLA-PG  214 (825)
T ss_pred             ehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch--hhhhc-cC
Confidence            99999888887777644 466788999875554  33 69999999999999999988877777776554  35555 79


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCC
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTK  279 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~D  279 (321)
                      +.|++|++||+.+-. +-..+.....|.+++|+|+|..+++|-.+
T Consensus       215 s~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  215 SSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            999999999998544 34566668889999999999999988655

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.5e-16  Score=156.27  Aligned_cols=224  Identities=13%  Similarity=0.164  Sum_probs=156.7

Q ss_pred             CCeEEEEEcCCCCE----EEEEcCCc-EEEEEecCC----ce--eEEeeeecCCceEEEEEecCC-CeEEEEeCCCCCCC
Q 020784           86 PTLLHISFNQDHGC----FAAGTDHG-FRIYNCDPF----RE--IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQY  153 (321)
Q Consensus        86 ~~V~~v~fs~dg~~----lasg~~~g-v~vw~~~~~----~~--~~~~~~~~~~~v~~v~~~~~~-~~~~~~sg~~~~~~  153 (321)
                      .+-+.++|.+.|..    ||.|.+|| |.+||....    +.  +..+.- |.|.|..+++.... |.+|.++       
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa-------  136 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGA-------  136 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccC-------
Confidence            36678999998876    78888877 889997653    11  111121 78899999986654 4665544       


Q ss_pred             CCCcEEEEeCCCCcEEEEE---eeCCceeEEEEeCCe---EEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC
Q 020784          154 PLNKVMIWDDHQSRCIGEL---SFRSEVRSVKLRRDR---IIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~---~~~~~v~~v~~~~~~---~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      ++|+|.|||+++-+.-...   ...+.|.++.|+++.   ++.++. +++-|||++..+.+-.+..+.....+..+.+++
T Consensus       137 ~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  137 DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP  216 (1049)
T ss_pred             CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence            6799999999875432222   234579999999753   444444 599999999888887777665544444555555


Q ss_pred             Cc--eEEEeecCCCC-cEEEEeeCC--cceEEeeccccceeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          227 GS--LVLVCPGLQKG-QVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       227 d~--~~la~sGs~dg-~V~i~d~~~--~~~~~l~~H~~~V~~vafspdg-~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      ++  ++++++++..- .|.+||++.  .+++++.+|...|.++.|++.+ .+|+|++.|+. |-+||.+||+.+.++-.+
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCCC
Confidence            54  55654444333 566699775  4578999999999999999766 89999999999 999999999999998653


Q ss_pred             Cc-ceeEEEee-cCceEEEe
Q 020784          301 SI-SAQSGLWL-SSAWLRVL  318 (321)
Q Consensus       301 ~~-~~~~~~s~-d~~~la~~  318 (321)
                      .+ ...+.+.+ ++..+|+|
T Consensus       296 ~nW~fdv~w~pr~P~~~A~a  315 (1049)
T KOG0307|consen  296 GNWCFDVQWCPRNPSVMAAA  315 (1049)
T ss_pred             CcceeeeeecCCCcchhhhh
Confidence            33 44455543 22344443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.68  E-value=1.7e-15  Score=142.14  Aligned_cols=217  Identities=15%  Similarity=0.191  Sum_probs=152.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEE-EEEecCCCe-EEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGV-VEMLFRCNI-LALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~-v~~~~~~~~-~~~~sg~~~~~~~d~~  157 (321)
                      .+|...|+.|++.+.. ++++|++ ++++||+-...+.+-+..+. |.+-+.. ++.....+. +.+.+       .|.+
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~-------~D~~   82 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG-------MDTT   82 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec-------ccce
Confidence            5788889999988866 5666665 56999986544333222221 2333333 333332222 33333       6899


Q ss_pred             EEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          158 VMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      |.+|.......+.++..|. .|.++....+..++.  .|.++++|-..  ++...+++|...+-  ++..-+++ .++ +
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVW--Av~~l~e~-~~v-T  156 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVW--AVASLPEN-TYV-T  156 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchhee--eeeecCCC-cEE-e
Confidence            9999999999888887665 798888766655333  46899999865  45556888866554  44334454 444 6


Q ss_pred             cCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEe--ecC
Q 020784          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLW--LSS  312 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s--~d~  312 (321)
                      |+.|++|++|.- .+.+++|.+|...|+.+++-+++. |+|||.||. ||.|++ +|+++.++ .||....-+++  .++
T Consensus       157 gsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~  231 (745)
T KOG0301|consen  157 GSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEM-HGHTNFVYSISMALSD  231 (745)
T ss_pred             ccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeee-eccceEEEEEEecCCC
Confidence            999999999975 556889999999999999998765 789999999 999999 88999888 58887665444  555


Q ss_pred             ceEEE
Q 020784          313 AWLRV  317 (321)
Q Consensus       313 ~~la~  317 (321)
                      +.+..
T Consensus       232 ~~Ivs  236 (745)
T KOG0301|consen  232 GLIVS  236 (745)
T ss_pred             CeEEE
Confidence            55543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=3e-15  Score=129.16  Aligned_cols=198  Identities=13%  Similarity=0.124  Sum_probs=152.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|.+.|.++.|-..|+.+++++- .+..+||+++++.+..... |++....++.++..+++++.+       .|-+.|
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQrLVvTsS-------rDtTFR  339 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQRLVVTSS-------RDTTFR  339 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcceEEEEec-------cCceeE
Confidence            3568899999999999999999996 5677999999998777776 788888888888887777776       679999


Q ss_pred             EEeCCCC-cEEEEEeeCC-ceeEEEEeCCeEE-EEECC-EEEEEEcCCcE-EEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          160 IWDDHQS-RCIGELSFRS-EVRSVKLRRDRII-VVLEQ-KIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       160 iWD~~~~-~~~~~~~~~~-~v~~v~~~~~~~~-~~~~~-~I~iwd~~~~~-~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +||++.. ..+.-|+.+. .|+++.|..+..+ .++|+ +|++||++++. .+.++... .++.-++++...  .++|+ 
T Consensus       340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~--~iIAi-  415 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGH--PIIAI-  415 (481)
T ss_pred             eccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC-CccceeEeecCC--ceEEe-
Confidence            9999843 3455566654 7999999876544 44554 99999998864 35555543 445566776643  78886 


Q ss_pred             cCCCCcEEEEeeCCcceE-----EeeccccceeEEEECCCC--CEEEEEeCCCcEEEEEEcCCC
Q 020784          235 GLQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~-----~l~~H~~~V~~vafspdg--~~las~S~Dgt~IrIWd~~tg  291 (321)
                      -..+..|+++|++...+.     .-++|..-|.|++|..+.  .-|.||+.|+. +-=|++.+-
T Consensus       416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~-v~gW~in~p  478 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRM-VAGWKINTP  478 (481)
T ss_pred             ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccce-eeeeEeccc
Confidence            666779999999876544     456899999999998553  34778999998 889988753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.67  E-value=5.4e-15  Score=138.74  Aligned_cols=195  Identities=14%  Similarity=0.163  Sum_probs=143.8

Q ss_pred             CCCCeEE-EEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           84 PPPTLLH-ISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        84 ~~~~V~~-v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      |.+-|.+ +++-+ |+-.|.+|+.|+ +.+|........+.... |...|+++....++. +  ++|+     -|.++||
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snVC~ls~~~~~~-~--iSgS-----WD~Takv  126 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNVCSLSIGEDGT-L--ISGS-----WDSTAKV  126 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc-cccceeeeecCCcCc-e--Eecc-----cccceEE
Confidence            4444555 66664 444577777766 66999888776665554 666777766544443 3  3433     5799999


Q ss_pred             EeCCCCcEEEEEeeC-CceeEEEEeCCeEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      |-.  +++...++.| ..|.++..-++..++.  .|++||+|.-  ++++++|.+|...+.-+++-++  +.++  |++.
T Consensus       127 W~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~--~~fl--ScsN  198 (745)
T KOG0301|consen  127 WRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD--SHFL--SCSN  198 (745)
T ss_pred             ecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC--CCeE--eecC
Confidence            964  4455556555 4789888766554443  3579999986  6788999999887776666554  2455  5799


Q ss_pred             CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      ||.|+.|++....+..+.+|++.|.+++...++..++|+++|++ +|||+..  +|.+.+.
T Consensus       199 Dg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~  256 (745)
T KOG0301|consen  199 DGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVIT  256 (745)
T ss_pred             CceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEe
Confidence            99999999988889999999999999998888999999999999 9999977  6666554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=2.1e-15  Score=135.10  Aligned_cols=192  Identities=16%  Similarity=0.161  Sum_probs=128.1

Q ss_pred             EEEEEcC-------CCCEEEEEcCCc-EEEEEecCCcee-----------------EEeeee---cCCceEEEEEecCCC
Q 020784           89 LHISFNQ-------DHGCFAAGTDHG-FRIYNCDPFREI-----------------FRRDFE---RGGGIGVVEMLFRCN  140 (321)
Q Consensus        89 ~~v~fs~-------dg~~lasg~~~g-v~vw~~~~~~~~-----------------~~~~~~---~~~~v~~v~~~~~~~  140 (321)
                      .|+.|-.       -|+|+|.|..+. |-|||++-...+                 ..+.+.   |...+..+.+...-.
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            4666643       367999999866 669997522110                 001100   222223333322221


Q ss_pred             eEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe---EEEEE-CCEEEEEEcCCcE-EEEEEeccC
Q 020784          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVL-EQKIFVYNFADLK-LLHQIETIA  214 (321)
Q Consensus       141 ~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~-~~~~l~~~~  214 (321)
                       -++++|+     .|++|++||+.++++...+.++ ..|.++.|++..   ++.++ +++|+++|.+... .-..++.. 
T Consensus       257 -nVLaSgs-----aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-  329 (463)
T KOG0270|consen  257 -NVLASGS-----ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-  329 (463)
T ss_pred             -eeEEecC-----CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-
Confidence             2333443     6899999999999999998854 589999999753   33333 6899999998421 11122221 


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCC
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~t  290 (321)
                      ..+-.+.+.++..+.+++  |..||+|+..|.+.  +++.++++|.+.|.+|+++.. -.+|+|+|.|++ |++|++..
T Consensus       330 g~VEkv~w~~~se~~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~  405 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDV  405 (463)
T ss_pred             cceEEEEecCCCceeEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecC
Confidence            234456666665545554  89999999988775  457899999999999999965 468999999999 99999874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=2.1e-15  Score=135.07  Aligned_cols=203  Identities=17%  Similarity=0.253  Sum_probs=154.7

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           83 SPPPTLLHISFNQDH-GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg-~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .|...|..++|+.+- ..||+|+. ++|++||+++++......+ |++.|..++|++....+.+.+ +     .|++|++
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsG-s-----~D~~V~l  313 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSG-S-----YDGTVAL  313 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEec-c-----ccceEEe
Confidence            577788899999865 46888886 6699999999998777775 789999999987665554444 2     6899999


Q ss_pred             EeCCC-CcEEEEEeeCCceeEEEEeCC---eEEEEE-CCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          161 WDDHQ-SRCIGELSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       161 WD~~~-~~~~~~~~~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      .|++. .+.-...++.+.|-.+.|++.   .+++.+ +|.++-+|+|+. +++.+++.|..++..++++..-. .+++ +
T Consensus       314 ~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p-~~l~-t  391 (463)
T KOG0270|consen  314 KDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP-GLLS-T  391 (463)
T ss_pred             eeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC-ccee-e
Confidence            99984 344556788889999999764   344555 479999999875 99999999999888877765432 3455 5


Q ss_pred             cCCCCcEEEEeeCCcceEEeeccc---cceeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCcEEE
Q 020784          235 GLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQ  295 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~~l~~H~---~~V~~vafspdg-~~las~S~Dgt~IrIWd~~tg~~i~  295 (321)
                      ++.|+.|++|++....-+....|.   +...|.++.|+- ..||.|+..+. +||||+.+...++
T Consensus       392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPVR  455 (463)
T ss_pred             ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce-EEEeecccChhHH
Confidence            999999999998765444444443   335677777774 46788888886 9999999876553

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.66  E-value=3.7e-15  Score=127.16  Aligned_cols=195  Identities=12%  Similarity=0.121  Sum_probs=141.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCcee-EEee----eecCCceEEEEEec--CCCeEEEEeCCCCCCCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI-FRRD----FERGGGIGVVEMLF--RCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~-~~~~----~~~~~~v~~v~~~~--~~~~~~~~sg~~~~~~~d~  156 (321)
                      +-++|.||.|.|++..||+-.+..|.+|+++....+ ....    ..+......-.|++  +++.+++.+        |+
T Consensus       122 avg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--------d~  193 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--------DS  193 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--------CC
Confidence            335899999999999999998999999999876542 1111    00123344445655  567777765        68


Q ss_pred             cEEEEeCCCCcEEEEEe--eCCceeEEEEeCCe---EEEEEC-CEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCce
Q 020784          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDR---IIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~--~~~~v~~v~~~~~~---~~~~~~-~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      +++.||+++.++...+.  +...|..+.|++++   ++.|.| ++|||||.+. ...++.+..|.+++-.+.|++..|..
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence            99999999887666554  33469999999874   344444 6999999975 56678888898888888887776644


Q ss_pred             EEEeecCCCCcEEEEeeC------------------------------CcceEEeeccccceeEEEECC-CCCEEEEEeC
Q 020784          230 VLVCPGLQKGQVRVEHYA------------------------------SKRTKFIMAHDSRIACFALTQ-DGQLLATSST  278 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~------------------------------~~~~~~l~~H~~~V~~vafsp-dg~~las~S~  278 (321)
                      +|  +|+.|..|.+|-..                              .+.+.++..|...|++++||. |-=+||+-|+
T Consensus       274 iL--s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY  351 (370)
T KOG1007|consen  274 IL--SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY  351 (370)
T ss_pred             EE--ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence            33  68888888886421                              223447888999999999984 5568999999


Q ss_pred             CCcEEEEEEcC
Q 020784          279 KGTLVRIFNTL  289 (321)
Q Consensus       279 Dgt~IrIWd~~  289 (321)
                      ||. +-|=++.
T Consensus       352 DGR-viIs~V~  361 (370)
T KOG1007|consen  352 DGR-VIISSVP  361 (370)
T ss_pred             Cce-EEeecCC
Confidence            999 6554443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3.7e-15  Score=134.24  Aligned_cols=190  Identities=14%  Similarity=0.133  Sum_probs=137.1

Q ss_pred             CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecC---------CceeEEeeeecCCceEEEEEecC
Q 020784           69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP---------FREIFRRDFERGGGIGVVEMLFR  138 (321)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~---------~~~~~~~~~~~~~~v~~v~~~~~  138 (321)
                      .|.........+...|=..|+|+.|+-||.+|++|+.|| |.+|.+..         .+.++.+.. |.=.|..+.+.+.
T Consensus       107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~G  185 (476)
T KOG0646|consen  107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSG  185 (476)
T ss_pred             EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCC
Confidence            444444444444467778999999999999999999988 77997621         122222221 3445666666554


Q ss_pred             C--CeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE-CCEEEEEEcCC----------
Q 020784          139 C--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFAD----------  203 (321)
Q Consensus       139 ~--~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~----------  203 (321)
                      +  ..+++++       .|+++|+||+..+..+.++.++..+.++.+.+-  .+++++ ++.|.+.++.+          
T Consensus       186 g~~~rl~TaS-------~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~  258 (476)
T KOG0646|consen  186 GTNARLYTAS-------EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ  258 (476)
T ss_pred             CccceEEEec-------CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc
Confidence            2  3455555       789999999999999999999999999998863  455654 46777777643          


Q ss_pred             ------cEEEEEEeccCC--CCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCC
Q 020784          204 ------LKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD  269 (321)
Q Consensus       204 ------~~~~~~l~~~~~--~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspd  269 (321)
                            +..+..+.+|.+  .+.+.+++.+  +.+|+ ||+.||.|+|||...++ ++++..-.++|+.+.+.|=
T Consensus       259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLl-SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  259 KGRHEENTQINVLVGHENESAITCLAISTD--GTLLL-SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             cccccccceeeeeccccCCcceeEEEEecC--ccEEE-eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence                  234556677777  5666667665  58888 69999999999998876 5566657889999999654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.66  E-value=6.3e-15  Score=132.50  Aligned_cols=227  Identities=11%  Similarity=0.099  Sum_probs=145.1

Q ss_pred             CCCCCCeEEEEEcCCC--CEEEEEcCCc-EEEEEecCCce----eEEeeeecCCceEEEEEecCC-CeEEEEeCCCCCCC
Q 020784           82 SSPPPTLLHISFNQDH--GCFAAGTDHG-FRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQY  153 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg--~~lasg~~~g-v~vw~~~~~~~----~~~~~~~~~~~v~~v~~~~~~-~~~~~~sg~~~~~~  153 (321)
                      +.+..+|++++|+|..  +++|+|+..| |-+||+.+.+.    ++...- |.+.|..+.+.+.. +.+...+       
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssS-------  254 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSS-------  254 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeec-------
Confidence            3456799999999965  4677777755 77999952221    111221 67789999988754 4444444       


Q ss_pred             CCCcEEEEeCCCCcE--EEEEeeCC-ceeEEEEeCC-eEEEEEC--CEEEEEEcCCcEE-EEEEeccCCCCceEEEeeCC
Q 020784          154 PLNKVMIWDDHQSRC--IGELSFRS-EVRSVKLRRD-RIIVVLE--QKIFVYNFADLKL-LHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~--~~~~~~~~-~v~~v~~~~~-~~~~~~~--~~I~iwd~~~~~~-~~~l~~~~~~~~~~~~s~~~  226 (321)
                      .||+||.-|++++..  +...+... ....+.|..+ ..++..+  +...+||++..+. ...+..|...+..++++|-.
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC  334 (498)
T ss_pred             cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence            689999999987642  22222121 2344555543 2333333  5789999976543 44555666655556665543


Q ss_pred             CceEEEeecCCCCcEEEEeeCC---cc--eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC----C----CcE
Q 020784          227 GSLVLVCPGLQKGQVRVEHYAS---KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL----D----GTL  293 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~---~~--~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~----t----g~~  293 (321)
                      . .++| +++.|++++|||+..   +.  +.....|...|.+..|||+|..|+|-+.|.. |||||..    .    +..
T Consensus       335 p-~~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  335 P-WFLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             c-hhee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCcccee
Confidence            2 3444 699999999999863   22  3445679999999999999888999999999 9999984    2    222


Q ss_pred             EEEEeCCCcceeEEEeecC--ceEEEee
Q 020784          294 LQEECCPSISAQSGLWLSS--AWLRVLR  319 (321)
Q Consensus       294 i~~~~~g~~~~~~~~s~d~--~~la~~~  319 (321)
                      .+....|.....+...|++  .+++++|
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~  439 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGR  439 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEec
Confidence            2322233333334334444  6676664

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.66  E-value=2.1e-15  Score=132.04  Aligned_cols=199  Identities=15%  Similarity=0.240  Sum_probs=134.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .....|.+.|+.|+++. +.+|.+|.+++|+.|.++-. .......  +..+..+..+...+.++++|         ..|
T Consensus       103 ~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~tilg--~s~~~gIdh~~~~~~FaTcG---------e~i  169 (433)
T KOG0268|consen  103 RTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLHTILG--KSVYLGIDHHRKNSVFATCG---------EQI  169 (433)
T ss_pred             heeecccCceeeEEecc-cceEEecCCcceeeeeccCC-cceeeec--cccccccccccccccccccC---------cee
Confidence            34467889999999999 77888888899999987542 2222221  34455555555566666655         568


Q ss_pred             EEEeCCCCcEEEEEeeCC-ceeEEEEeCC---eEEEE-ECCEEEEEEcCCcEEEEEEeccCC------------------
Q 020784          159 MIWDDHQSRCIGELSFRS-EVRSVKLRRD---RIIVV-LEQKIFVYNFADLKLLHQIETIAN------------------  215 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~-~v~~v~~~~~---~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~------------------  215 (321)
                      -|||.+....+..+.... .+.++.|++-   .+++| .|+.|.+||+++.+.++++.....                  
T Consensus       170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc
Confidence            888887777777666554 5777777763   34444 456888888877766665421110                  


Q ss_pred             ----------------------CCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-Ee-eccccceeEEEECCCCC
Q 020784          216 ----------------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDGQ  271 (321)
Q Consensus       216 ----------------------~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l-~~H~~~V~~vafspdg~  271 (321)
                                            ...++++.++|.|.-++ +|+.|++|+|+....+... ++ ..-...|.||.||-|.+
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv-sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV-SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK  328 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeEEEeccCCCcchhc-cccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence                                  01244555555567777 6999999999887643221 11 11234699999999999


Q ss_pred             EEEEEeCCCcEEEEEEcCCCc
Q 020784          272 LLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       272 ~las~S~Dgt~IrIWd~~tg~  292 (321)
                      +++|||+|+. ||+|.....+
T Consensus       329 yi~SGSdd~n-vRlWka~Ase  348 (433)
T KOG0268|consen  329 YIISGSDDGN-VRLWKAKASE  348 (433)
T ss_pred             EEEecCCCcc-eeeeecchhh
Confidence            9999999999 9999876543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.7e-14  Score=139.15  Aligned_cols=176  Identities=13%  Similarity=0.132  Sum_probs=140.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      -++++++|+-+|+++|.|++|. |++-+++....+.+... |+++|.++.+.+.++.+|+++       .||+|+|||++
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss-------~dG~v~iw~~~  168 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSS-------CDGKVQIWDLQ  168 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEe-------cCceEEEEEcc
Confidence            3899999999999999999976 88999987776655554 789999999999999999988       67999999999


Q ss_pred             CCcEEEEEee---------CCceeEEEEeCC---eEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          165 QSRCIGELSF---------RSEVRSVKLRRD---RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       165 ~~~~~~~~~~---------~~~v~~v~~~~~---~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      ++.+..++..         ...+..++|+++   .++.+.++.|++|+..+++...++.........+.+.+.|.|.+||
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            9887665432         224566889987   3445578999999999999888887644444466666677789999


Q ss_pred             eecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEE
Q 020784          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL  273 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~l  273 (321)
                      + ++.||.|.|||..+...   ......|.|++|.|++.-+
T Consensus       249 A-s~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  249 A-STLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             e-eccCCcEEEEecccchh---ccccceeEEEecCCCCCee
Confidence            5 99999999999876222   3335679999999997644

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=1.1e-14  Score=129.52  Aligned_cols=181  Identities=14%  Similarity=0.165  Sum_probs=129.9

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC---cEEEEEee-CCceeEEEEeCCe--EEEE-ECCEEEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSF-RSEVRSVKLRRDR--IIVV-LEQKIFV  198 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~---~~~~~~~~-~~~v~~v~~~~~~--~~~~-~~~~I~i  198 (321)
                      |...|-.+.+++++.++|+++       .|.+..||++...   +...++.. ..+|.-+.|+|+.  ++.| .+..+++
T Consensus       223 htdEVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            577899999999999999988       7899999987533   23445544 4589999999973  4444 3468999


Q ss_pred             EEcCCcEEEEEEecc-CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeecc--------------------
Q 020784          199 YNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH--------------------  257 (321)
Q Consensus       199 wd~~~~~~~~~l~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H--------------------  257 (321)
                      ||..++++.+.+... .....+|++.|+  +.-+++ |+.|+.|..||.....+...++-                    
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~-Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFVT-GSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccC--CceeEe-cCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEE
Confidence            999999998888654 344556666665  466664 99999998888653322222111                    


Q ss_pred             ----------------------ccceeEEEECCCCCEE------------------------------------------
Q 020784          258 ----------------------DSRIACFALTQDGQLL------------------------------------------  273 (321)
Q Consensus       258 ----------------------~~~V~~vafspdg~~l------------------------------------------  273 (321)
                                            ..+|++.++|.||+++                                          
T Consensus       373 ~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  373 TVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             ecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence                                  1234444444444433                                          


Q ss_pred             ---EEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecC---ceEEEe
Q 020784          274 ---ATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSS---AWLRVL  318 (321)
Q Consensus       274 ---as~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~---~~la~~  318 (321)
                         ||||+|+. |+||+..+|+++.++ .||..+..++++++   ..+|-|
T Consensus       453 ~fiaSGSED~k-vyIWhr~sgkll~~L-sGHs~~vNcVswNP~~p~m~ASa  501 (519)
T KOG0293|consen  453 KFIASGSEDSK-VYIWHRISGKLLAVL-SGHSKTVNCVSWNPADPEMFASA  501 (519)
T ss_pred             ceEEecCCCce-EEEEEccCCceeEee-cCCcceeeEEecCCCCHHHhhcc
Confidence               99999999 999999999999999 68998888888777   445443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.64  E-value=7.9e-15  Score=136.53  Aligned_cols=205  Identities=15%  Similarity=0.190  Sum_probs=134.7

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEecCCc----e-----------------------eEEeeeecCCce
Q 020784           80 TSSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFR----E-----------------------IFRRDFERGGGI  130 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~-~lasg~~~g-v~vw~~~~~~----~-----------------------~~~~~~~~~~~v  130 (321)
                      ...+|...|.+++|.++.. .|++|+.|| +.|||+.-..    .                       ...... +...+
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti  217 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTI  217 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc-ccCce
Confidence            3467889999999999764 678888877 7799973111    0                       000000 22333


Q ss_pred             EE---EEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEe------eCC------ceeEEEEeC--C-eEEEEE
Q 020784          131 GV---VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS------FRS------EVRSVKLRR--D-RIIVVL  192 (321)
Q Consensus       131 ~~---v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~------~~~------~v~~v~~~~--~-~~~~~~  192 (321)
                      ..   +-+..|...++.+++.      |+.|||||+++.......+      ++.      .+.++....  . .++.|+
T Consensus       218 ~ssvTvv~fkDe~tlaSaga~------D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt  291 (720)
T KOG0321|consen  218 FSSVTVVLFKDESTLASAGAA------DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT  291 (720)
T ss_pred             eeeeEEEEEeccceeeeccCC------CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence            32   3334567777777753      7999999998865543321      111      234444433  3 456678


Q ss_pred             CCEEEEEEcCCc--EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECC
Q 020784          193 EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ  268 (321)
Q Consensus       193 ~~~I~iwd~~~~--~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafsp  268 (321)
                      |+.|++||+...  ..+..+.++........-...+|+++++ ||+.|+..+||.+..-  ....+.+|...|++|+|.|
T Consensus       292 D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~-SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  292 DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL-SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe-ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            999999999653  2333333332222222223345668888 7999999999988753  3568899999999999987


Q ss_pred             C-CCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          269 D-GQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       269 d-g~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      . -.-+||||+|-+ ++||++..|-+
T Consensus       371 S~~t~v~TcSdD~~-~kiW~l~~~l~  395 (720)
T KOG0321|consen  371 SATTPVATCSDDFR-VKIWRLSNGLE  395 (720)
T ss_pred             ccCCCceeeccCcc-eEEEeccCchh
Confidence            5 345788899999 99999977643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.1e-13  Score=127.96  Aligned_cols=204  Identities=13%  Similarity=0.187  Sum_probs=151.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCcee-EEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .+..|+|++|+.+.+.||.|-.+| |-||++...-.. ...+...+..|..++|+..+ .+..++       -+|.|.-|
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g-------~sg~i~Ew   95 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSG-------LSGSITEW   95 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeec-------CCceEEEE
Confidence            446899999999999999998866 669998764321 11222135678899998444 444555       35999999


Q ss_pred             eCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          162 DDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      |+.+++....++.. +.|.+++.++.  .+.+++ ++.+.++++..+++........+...+.++++++++.-++ .|+.
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~  174 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSI  174 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-eccc
Confidence            99999988877754 47999998864  455654 4677777888887766655555556788899999888777 4999


Q ss_pred             CCcEEEEeeCCcc-eE----Eeec----cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          238 KGQVRVEHYASKR-TK----FIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       238 dg~V~i~d~~~~~-~~----~l~~----H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      ||.|++||..... ++    .+.+    -..-|++|.|-.++ .+|+|..-|+ |++||...|.+++.++
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~  242 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHS  242 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhh
Confidence            9999999987654 33    1222    23348889888666 4788988999 9999999999988764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.63  E-value=1.7e-14  Score=135.89  Aligned_cols=221  Identities=14%  Similarity=0.141  Sum_probs=150.2

Q ss_pred             eEEEEEcCCCCEEEEEcCC-cEEEEEecCCcee---EEeeeecCCceEEEEEec----C-------CCeEEEEeCCCCCC
Q 020784           88 LLHISFNQDHGCFAAGTDH-GFRIYNCDPFREI---FRRDFERGGGIGVVEMLF----R-------CNILALVGGGPDPQ  152 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~---~~~~~~~~~~v~~v~~~~----~-------~~~~~~~sg~~~~~  152 (321)
                      --.+.|++..++|.+--++ .+.|||+...+..   +..-+ |...|-.|+..+    +       ...+.+++      
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS------  399 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRGCFTTCS------  399 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee-ccceeeeeccccccccCcccccCCccceeEec------
Confidence            4467899999999988774 5789998654332   22222 455555554433    1       12345555      


Q ss_pred             CCCCcEEEEeCCCC---cEEEE-----------------------------------EeeCCceeEEEEeCCeEEEEEC-
Q 020784          153 YPLNKVMIWDDHQS---RCIGE-----------------------------------LSFRSEVRSVKLRRDRIIVVLE-  193 (321)
Q Consensus       153 ~~d~~v~iWD~~~~---~~~~~-----------------------------------~~~~~~v~~v~~~~~~~~~~~~-  193 (321)
                       .|++||+||+..+   +..+.                                   +.....+.+++++++.-.++.+ 
T Consensus       400 -sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD  478 (1080)
T KOG1408|consen  400 -SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD  478 (1080)
T ss_pred             -CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence             7899999998652   11110                                   0011247788888877655543 


Q ss_pred             --CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC-CceEEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEE----
Q 020784          194 --QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACF----  264 (321)
Q Consensus       194 --~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~-d~~~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~v----  264 (321)
                        +.+|+|++...+...+++.|...+.+..++..- ...+|| |++.|.-|.|+|....  .+.++.+|.+.|++|    
T Consensus       479 r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA-SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~  557 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA-SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC  557 (1080)
T ss_pred             ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh-hccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence              699999999988888899999888888876543 245666 7999999999886432  233555555555444    


Q ss_pred             ---------------------------------------------EECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          265 ---------------------------------------------ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       265 ---------------------------------------------afspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                                                                   +..|+-+++++++.|+. |||||+++||..++|+.
T Consensus       558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKg  636 (1080)
T KOG1408|consen  558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKG  636 (1080)
T ss_pred             cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEeccccceeeeecc
Confidence                                                         44555556699999999 99999999999999974


Q ss_pred             CCcc----eeEEEeecCceEEEe
Q 020784          300 PSIS----AQSGLWLSSAWLRVL  318 (321)
Q Consensus       300 g~~~----~~~~~s~d~~~la~~  318 (321)
                      .++.    ..+.+-++|.|||..
T Consensus       637 s~~~eG~lIKv~lDPSgiY~atS  659 (1080)
T KOG1408|consen  637 SRDHEGDLIKVILDPSGIYLATS  659 (1080)
T ss_pred             cccCCCceEEEEECCCccEEEEe
Confidence            4332    344677888999874

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.63  E-value=6e-15  Score=133.84  Aligned_cols=220  Identities=15%  Similarity=0.092  Sum_probs=154.5

Q ss_pred             CeEEEEEcCCCCEEEEEc---CCcEEEEEecC--CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           87 TLLHISFNQDHGCFAAGT---DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~---~~gv~vw~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .|.++.|+.... |++++   ++.+++|..+.  .+.-..... .+..-.|+.+..-  .+..++||     ..++|+||
T Consensus        36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~-~gd~~~Cv~~~s~--S~y~~sgG-----~~~~Vkiw  106 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKL-TGDNAFCVACASQ--SLYEISGG-----QSGCVKIW  106 (673)
T ss_pred             cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecc-ccchHHHHhhhhc--ceeeeccC-----cCceeeeh
Confidence            488899988765 44333   34467996532  222222222 1222223332222  24455555     45999999


Q ss_pred             eCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEEC-CEEEEEEcCCcEEEEEEeccCC-CCceEEEeeCCCceEEEeecC
Q 020784          162 DDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~-~~~~~~~s~~~d~~~la~sGs  236 (321)
                      |++...+++.++.+ ..|++|.++..  .++.+.+ +.|.|-.+.++..-..|....+ .+..+.+++..  ..+..+.+
T Consensus       107 dl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk--r~lL~~as  184 (673)
T KOG4378|consen  107 DLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK--RFLLSIAS  184 (673)
T ss_pred             hhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc--ceeeEeec
Confidence            99977777776654 58999998754  4555554 6899999988777667765533 33456666654  44444689


Q ss_pred             CCCcEEEEeeCCcc-e-EEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCc
Q 020784          237 QKGQVRVEHYASKR-T-KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSA  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~-~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~  313 (321)
                      .+|.|.+||.+... + ...+.|..+...|||+|. ..+|||.+.|+. |.+||+++.+...++...+.-..+.|+.+|.
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~  263 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLTYSHPLSTVAFSECGT  263 (673)
T ss_pred             cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceeeecCCcceeeecCCce
Confidence            99999999998754 3 367889999999999986 568999999999 9999999998888887777778889999999


Q ss_pred             eEEEe
Q 020784          314 WLRVL  318 (321)
Q Consensus       314 ~la~~  318 (321)
                      ||++.
T Consensus       264 ~L~aG  268 (673)
T KOG4378|consen  264 YLCAG  268 (673)
T ss_pred             EEEee
Confidence            99763

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.63  E-value=2.1e-13  Score=124.09  Aligned_cols=215  Identities=18%  Similarity=0.234  Sum_probs=155.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .-|.|++|.++|+. ++|..+| +.||+..+.+...... .|+++|.++++..++.++-   |+     -|+.|..|| .
T Consensus       247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS---Gg-----KDRki~~Wd-~  315 (626)
T KOG2106|consen  247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS---GG-----KDRKIILWD-D  315 (626)
T ss_pred             eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee---cC-----ccceEEecc-c
Confidence            57999999999994 5666555 6699987776554444 4899999999998886553   44     479999999 4


Q ss_pred             CCcEEEEEeeC---CceeEEEEeCCeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          165 QSRCIGELSFR---SEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       165 ~~~~~~~~~~~---~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      .-+.+++.+.+   +.|..+.-.+..+++++. +.|-.=+++++-.+ ...+|..  ....+..+++...++ +++.|+.
T Consensus       316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~d--elwgla~hps~~q~~-T~gqdk~  391 (626)
T KOG2106|consen  316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGD--ELWGLATHPSKNQLL-TCGQDKH  391 (626)
T ss_pred             cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE-EEEeccc--ceeeEEcCCChhhee-eccCcce
Confidence            44444555543   467777766655777765 56666666554332 2334433  344444555556666 4889999


Q ss_pred             EEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       241 V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      |++|+  ..++.--+.-..++.|+.|+|.| .+|.|...|. .-|.|.++..++..-..+.....+.+++||.+||+++
T Consensus       392 v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs  466 (626)
T KOG2106|consen  392 VRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGR-WFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS  466 (626)
T ss_pred             EEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccce-EEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec
Confidence            99999  44444444567889999999999 8999999999 7799999987776655555556679999999999975

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.9e-14  Score=128.40  Aligned_cols=189  Identities=16%  Similarity=0.198  Sum_probs=134.0

Q ss_pred             EEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      .+++|+.||..|++|+.|| +|||++.....+..... |.+.|..+.+++++..++.++       .| ..+|||++++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk~lasig-------~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGKFLASIG-------AD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCcEEEEec-------CC-ceEEEEeccCc
Confidence            7899999999999999877 78999876654433222 678999999999999999998       45 79999999997


Q ss_pred             EEEEEe-eCC--ceeEEEEeCCe----EEEE-E---CCEEEEEEcCCcE---EEE--EEeccCCCCceEEEeeCCCceEE
Q 020784          168 CIGELS-FRS--EVRSVKLRRDR----IIVV-L---EQKIFVYNFADLK---LLH--QIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       168 ~~~~~~-~~~--~v~~v~~~~~~----~~~~-~---~~~I~iwd~~~~~---~~~--~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      .+.... +..  ....+.|..+.    +.++ .   .+.|+.|++...+   .++  +.......+.+++++  .||.++
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS--~dGkf~  296 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS--DDGKFL  296 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc--CCCcEE
Confidence            776654 222  23344554432    2222 2   2467776663211   111  111112234445555  466999


Q ss_pred             EeecCCCCcEEEEeeCCcc-e-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          232 VCPGLQKGQVRVEHYASKR-T-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~-~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      |. |+.||.|.|++...-+ + ..-++|..-|+.|.|+||.+++++.|.|.+ ++|..+.-
T Consensus       297 Al-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v  355 (398)
T KOG0771|consen  297 AL-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV  355 (398)
T ss_pred             EE-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence            96 9999999998876544 2 355689999999999999999999999999 99987653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.8e-14  Score=120.37  Aligned_cols=203  Identities=14%  Similarity=0.128  Sum_probs=147.9

Q ss_pred             ccCCCCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~--dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ...+|.++|.-++|--  -|.+||+++-++ |.||.-+.++.....++. |...+..+++.++.-.+.+++++     +|
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas-----SD  125 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS-----SD  125 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee-----CC
Confidence            3478999999999976  799999999866 889998777533222222 78899999998876555554433     78


Q ss_pred             CcEEEEeCCCC-cE-EEEE--eeCCceeEEEEeCC----------------eEEEE-ECCEEEEEEcCCc--EEEEEEec
Q 020784          156 NKVMIWDDHQS-RC-IGEL--SFRSEVRSVKLRRD----------------RIIVV-LEQKIFVYNFADL--KLLHQIET  212 (321)
Q Consensus       156 ~~v~iWD~~~~-~~-~~~~--~~~~~v~~v~~~~~----------------~~~~~-~~~~I~iwd~~~~--~~~~~l~~  212 (321)
                      |+|.|.+.+.. .. ...+  -+..-|.+++|.+-                +++.+ .|+.|+||+..++  ++-++|..
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~  205 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG  205 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence            99999998754 22 1112  23346788888653                34444 3579999999763  44456888


Q ss_pred             cCCCCceEEEeeCCC--ceEEEeecCCCCcEEEEeeCCc----ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 020784          213 IANPKGLCAVSQGVG--SLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (321)
Q Consensus       213 ~~~~~~~~~~s~~~d--~~~la~sGs~dg~V~i~d~~~~----~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIW  286 (321)
                      |...+.-++.+|.-.  ...|| |++.||+|.||.....    +.+.++.....+..+.||..|..||.++.|+. |.+|
T Consensus       206 H~dwVRDVAwaP~~gl~~s~iA-S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk-vtlw  283 (299)
T KOG1332|consen  206 HKDWVRDVAWAPSVGLPKSTIA-SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK-VTLW  283 (299)
T ss_pred             cchhhhhhhhccccCCCceeeE-EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE-EEEE
Confidence            888887777777532  34667 7999999999976532    23356667889999999999999999999999 9999


Q ss_pred             EcC
Q 020784          287 NTL  289 (321)
Q Consensus       287 d~~  289 (321)
                      .=.
T Consensus       284 ke~  286 (299)
T KOG1332|consen  284 KEN  286 (299)
T ss_pred             EeC
Confidence            643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.61  E-value=5e-14  Score=128.42  Aligned_cols=218  Identities=10%  Similarity=0.080  Sum_probs=144.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEee-------ee----cCCceEEEEEecCCC-eEEEEeCCCCC
Q 020784           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRD-------FE----RGGGIGVVEMLFRCN-ILALVGGGPDP  151 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~-------~~----~~~~v~~v~~~~~~~-~~~~~sg~~~~  151 (321)
                      ...|++++|++.|..|++.+. -..+|+|-+-....-...       +.    |...+.+.+|++... .+.+++     
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s-----  288 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS-----  288 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec-----
Confidence            358999999999987665554 557788865443321111       10    334556668877654 445555     


Q ss_pred             CCCCCcEEEEeCCCCcE-EEEEee------CCceeEEEEeCCeEEE---EECCEEEEEEcCCcEE--EE-EEeccCCCCc
Q 020784          152 QYPLNKVMIWDDHQSRC-IGELSF------RSEVRSVKLRRDRIIV---VLEQKIFVYNFADLKL--LH-QIETIANPKG  218 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~~-~~~~~~------~~~v~~v~~~~~~~~~---~~~~~I~iwd~~~~~~--~~-~l~~~~~~~~  218 (321)
                        .|+++||||+++.+. ..-++.      ...++.+.|+++...+   |.++.|.+|+......  .. .-+.|.....
T Consensus       289 --~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~  366 (641)
T KOG0772|consen  289 --YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD  366 (641)
T ss_pred             --CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence              689999999986542 222332      1268889999876433   3568999999854322  12 2245655445


Q ss_pred             eEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccc--cceeEEEECCCCCEEEEEeC------CCcEEEEEEc
Q 020784          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD--SRIACFALTQDGQLLATSST------KGTLVRIFNT  288 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~--~~V~~vafspdg~~las~S~------Dgt~IrIWd~  288 (321)
                      +.++++..|+++|+ |-+.|+++++||+..  +++++..+--  -+-+.++|||+.++++||..      .|+ +.+||.
T Consensus       367 Itsi~FS~dg~~Ll-SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~-L~f~d~  444 (641)
T KOG0772|consen  367 ITSISFSYDGNYLL-SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGT-LFFFDR  444 (641)
T ss_pred             eeEEEeccccchhh-hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCce-EEEEec
Confidence            55556666779998 688999999999875  3455554432  34678999999999999743      567 889999


Q ss_pred             CCCcEEEEEeCCCcceeEEEeecC
Q 020784          289 LDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       289 ~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                      .+.+.++++... ...++...|.+
T Consensus       445 ~t~d~v~ki~i~-~aSvv~~~Whp  467 (641)
T KOG0772|consen  445 MTLDTVYKIDIS-TASVVRCLWHP  467 (641)
T ss_pred             cceeeEEEecCC-CceEEEEeecc
Confidence            999998887543 34444555555

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.60  E-value=5.7e-13  Score=121.36  Aligned_cols=197  Identities=16%  Similarity=0.231  Sum_probs=146.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCC---------cEEEEEecCCceeEEeeeecCCceEEEEEec--CCCeEEEEeCC
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDH---------GFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGG  148 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~---------gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~sg~  148 (321)
                      ....|+..|.|+..+||.-++|+|-..         .|||||..+...++...+ -+..|.+++++.  .+++++.+..+
T Consensus        99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~-f~~GV~~vaFsk~~~G~~l~~vD~s  177 (626)
T KOG2106|consen   99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF-FDRGVTCVAFSKINGGSLLCAVDDS  177 (626)
T ss_pred             cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecc-ccccceeeeecccCCCceEEEecCC
Confidence            346788999999999999988876532         289999777766655543 256788888865  45666666644


Q ss_pred             CCCCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCC---eEEEEECCEEEEEEcCCcEEEEEEec---cCCCCceEE
Q 020784          149 PDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD---RIIVVLEQKIFVYNFADLKLLHQIET---IANPKGLCA  221 (321)
Q Consensus       149 ~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~---~~~~~~~~~I~iwd~~~~~~~~~l~~---~~~~~~~~~  221 (321)
                           ++..+-|||.+.+......+... .|....|||.   .++.+..+.+.+|+.+.+.+.++...   +.. ..+.+
T Consensus       178 -----~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~  251 (626)
T KOG2106|consen  178 -----NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLC  251 (626)
T ss_pred             -----CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEE
Confidence                 57889999999888776666544 5677889974   34445567999999998877766533   322 44566


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      +.+.+++..+  +|+.+|.|.||+..+.. .++..+|.+.|.+++.-.+|.+|- |+.|+. |-.||
T Consensus       252 v~F~engdvi--TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk-i~~Wd  314 (626)
T KOG2106|consen  252 VTFLENGDVI--TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK-IILWD  314 (626)
T ss_pred             EEEcCCCCEE--eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccce-EEecc
Confidence            6666666666  49999999999976544 334449999999999999998664 888988 88998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.3e-13  Score=124.16  Aligned_cols=228  Identities=12%  Similarity=0.097  Sum_probs=153.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecC--CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .+...+.|+||.|+|.-..|.+++- +.++||.++-  ...+....+ ...+|...++.+++...+++++.      .+-
T Consensus       209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~r------rky  281 (514)
T KOG2055|consen  209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGR------RKY  281 (514)
T ss_pred             CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEeccc------ceE
Confidence            3444568999999999998887776 5589998853  334444444 36789999999988866666643      366


Q ss_pred             EEEEeCCCCcEEEEEe--e--CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          158 VMIWDDHQSRCIGELS--F--RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~--~--~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      +.+||+.+.+....-.  .  ...+....++++  .+++++ .+.|.+.-..+++.+.+++.... +.-.+|+  .|+..
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~-v~~~~fs--Sdsk~  358 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV-VSDFTFS--SDSKE  358 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE-EeeEEEe--cCCcE
Confidence            8999998876543211  1  113444455544  344443 36999999999999888875422 2334444  44455


Q ss_pred             EEeecCCCCcEEEEeeCCcc-eEEeecccc-ceeEEEECCCCCEEEEEeCCCcEEEEEEcCC------CcEEEEEeCCCc
Q 020784          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEECCPSI  302 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~-~~~l~~H~~-~V~~vafspdg~~las~S~Dgt~IrIWd~~t------g~~i~~~~~g~~  302 (321)
                      |.+ .+.+|.|.+||++... ++.+....+ .=+++|.|++|.|||+||.-|- |.|+|..+      -+.+.++..-..
T Consensus       359 l~~-~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  359 LLA-SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDNLTT  436 (514)
T ss_pred             EEE-EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhhhhe
Confidence            543 4557899999998764 444443221 2367888999999999998888 99999765      245555532222


Q ss_pred             -ceeEEEeecCceEEEeec
Q 020784          303 -SAQSGLWLSSAWLRVLRT  320 (321)
Q Consensus       303 -~~~~~~s~d~~~la~~~~  320 (321)
                       ...++|++|++.||+|+.
T Consensus       437 ~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  437 AITSLQFNHDAQILAIASR  455 (514)
T ss_pred             eeeeeeeCcchhhhhhhhh
Confidence             334588999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=3.6e-14  Score=128.85  Aligned_cols=214  Identities=10%  Similarity=0.117  Sum_probs=154.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      .-.|++......|+++|+..+ |+|||+....+..... .|...|.+|.......++|.++.+       |.|.|-.+.+
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~g-------Gdiiih~~~t  152 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDG-------GDIIIHGTKT  152 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccC-------CcEEEEeccc
Confidence            345555555568999998855 7799998433322222 267788888888888899988844       8899999999


Q ss_pred             CcEEEEEeeCC--ceeEEEEeCC---eEEEEEC-CEEEEEEcCCcEEEEEE-eccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          166 SRCIGELSFRS--EVRSVKLRRD---RIIVVLE-QKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       166 ~~~~~~~~~~~--~v~~v~~~~~---~~~~~~~-~~I~iwd~~~~~~~~~l-~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      +....+|....  .|.-+.+++.   .+.++++ +.|.+||+..+..+..+ +.|..|..-+||++..  ..|.++-+.|
T Consensus       153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn--e~l~vsVG~D  230 (673)
T KOG4378|consen  153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN--EALLVSVGYD  230 (673)
T ss_pred             CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc--cceEEEeccc
Confidence            98888887763  5656777753   2444554 69999999887776655 4577777777777754  3343467889


Q ss_pred             CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeec
Q 020784          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLS  311 (321)
Q Consensus       239 g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d  311 (321)
                      ..|.+||...+....--....+..+|+|+++|.+|+.|+..|. |.-||++.-+.--+....|+....+++|.
T Consensus       231 kki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  231 KKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             ceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeeecccceeEEEee
Confidence            9999999886654433345678999999999999999999999 88999997664333445666665555443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.58  E-value=1.7e-13  Score=117.16  Aligned_cols=229  Identities=10%  Similarity=0.087  Sum_probs=152.4

Q ss_pred             CCCCCCeEEEEEcCCCC-----EEEEEcCCcEEEEEecCCceeEEee--ee------cCCceEEEEEec-CCCeEEEEeC
Q 020784           82 SSPPPTLLHISFNQDHG-----CFAAGTDHGFRIYNCDPFREIFRRD--FE------RGGGIGVVEMLF-RCNILALVGG  147 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-----~lasg~~~gv~vw~~~~~~~~~~~~--~~------~~~~v~~v~~~~-~~~~~~~~sg  147 (321)
                      ..|+.+++-+.|.||..     +||+. .+-+|||.+.........+  +.      +..++....|.- +.+++.+.+ 
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec-
Confidence            46778999999999863     45554 5677999886422111110  00      234555555533 566776666 


Q ss_pred             CCCCCCCCCcEEEEeCCCCcE----EEEEeeCCceeEEEEeCC---eEEEE-ECCEEEEEEcCCcEEEEEEeccCC-CCc
Q 020784          148 GPDPQYPLNKVMIWDDHQSRC----IGELSFRSEVRSVKLRRD---RIIVV-LEQKIFVYNFADLKLLHQIETIAN-PKG  218 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~----~~~~~~~~~v~~v~~~~~---~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~-~~~  218 (321)
                            -|-+..|||++++..    .+-+.++++|+.++|...   .++.+ .||.+|+||++..+--..+-...+ ...
T Consensus       171 ------iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p  244 (364)
T KOG0290|consen  171 ------IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP  244 (364)
T ss_pred             ------ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence                  689999999998732    234667889999999873   34544 468999999987654333332222 233


Q ss_pred             eEEEeeCC-CceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCc--
Q 020784          219 LCAVSQGV-GSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT--  292 (321)
Q Consensus       219 ~~~~s~~~-d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~--  292 (321)
                      ...++++. |-+++|.-+-....|.|.|++.  .++..|++|.+.|+.|+|.|. ...++||++|.. +-|||+.+.-  
T Consensus       245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~  323 (364)
T KOG0290|consen  245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRE  323 (364)
T ss_pred             ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEeccccccc
Confidence            45555543 3356664344455788877765  457789999999999999986 678999997776 9999998632  


Q ss_pred             ----EEEEEeCCCcceeEEEe-ecCceEEEee
Q 020784          293 ----LLQEECCPSISAQSGLW-LSSAWLRVLR  319 (321)
Q Consensus       293 ----~i~~~~~g~~~~~~~~s-~d~~~la~~~  319 (321)
                          .+-.|..+++...++.+ ..+.|+|+|.
T Consensus       324 ~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  324 NGEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             CCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence                23345556665566554 5568999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.58  E-value=5e-14  Score=120.33  Aligned_cols=198  Identities=14%  Similarity=0.132  Sum_probs=141.3

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcC--------CcEEEEEecCC---------ceeEEeeeecCCceEEEEEecCCCeEE
Q 020784           82 SSPPPTLLHISFNQD-HGCFAAGTD--------HGFRIYNCDPF---------REIFRRDFERGGGIGVVEMLFRCNILA  143 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasg~~--------~gv~vw~~~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~~~  143 (321)
                      ..|.+.|..++-+|- .+.|++...        -+..||.+...         +.+......+-+.+.+++|.|++..++
T Consensus        60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kla  139 (370)
T KOG1007|consen   60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLA  139 (370)
T ss_pred             hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeE
Confidence            456679999999984 556776543        13569987432         122222211346889999999998888


Q ss_pred             EEeCCCCCCCCCCcEEEEeCCCCcE-EEEEee------CCceeEEEEeC----CeEEEEECCEEEEEEcCCcEEEEEEec
Q 020784          144 LVGGGPDPQYPLNKVMIWDDHQSRC-IGELSF------RSEVRSVKLRR----DRIIVVLEQKIFVYNFADLKLLHQIET  212 (321)
Q Consensus       144 ~~sg~~~~~~~d~~v~iWD~~~~~~-~~~~~~------~~~v~~v~~~~----~~~~~~~~~~I~iwd~~~~~~~~~l~~  212 (321)
                      ...        |+.|.+|+++.+.. +.++..      ....++-.|++    +.++...++++..||+++++....+..
T Consensus       140 sm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  140 SMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             Eec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence            775        68999999988765 444332      22455666765    346666778999999999888777754


Q ss_pred             -cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEc
Q 020784          213 -IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       213 -~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~  288 (321)
                       |.+-+.-+.|  +|+.+.+.++|+.||.|+|||.+.  .++.++.+|...|.+|.|+|. .+++.|||.|.. |.+|..
T Consensus       212 AHgq~vrdlDf--Npnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca  288 (370)
T KOG1007|consen  212 AHGQRVRDLDF--NPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCA  288 (370)
T ss_pred             hhcceeeeccC--CCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEec
Confidence             4443334444  455555555799999999999875  347789999999999999987 578999999999 989976


Q ss_pred             CC
Q 020784          289 LD  290 (321)
Q Consensus       289 ~t  290 (321)
                      .+
T Consensus       289 ~s  290 (370)
T KOG1007|consen  289 SS  290 (370)
T ss_pred             cc
Confidence            53

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=8.9e-15  Score=144.05  Aligned_cols=201  Identities=16%  Similarity=0.175  Sum_probs=148.7

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEecCCceeEEeee-ecCCceEEEEEecCC-CeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasg~~~g-v~vw~~~~~~~~~~~~~-~~~~~v~~v~~~~~~-~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|.+.|+.+.|++.+. +||+|+++| |.|||+...+.-+...- .-...|.++.|.-.- ..++.++       .++.
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s-------~sg~  185 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS-------PSGR  185 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC-------CCCC
Confidence            56888999999999765 999999977 88999987654443310 013567777775432 2333333       5689


Q ss_pred             EEEEeCCCCcEEEEEeeCC---ceeEEEEeCC---eEEEEEC----CEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCC
Q 020784          158 VMIWDDHQSRCIGELSFRS---EVRSVKLRRD---RIIVVLE----QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~---~v~~v~~~~~---~~~~~~~----~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      +.|||++..+.+..+....   .+..+.||++   .++++++    ..|.+||+|. ...++++++|...+..+++++..
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence            9999999888776665544   3778999987   4667654    2899999974 45667777777665555555543


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCc
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg~  292 (321)
                       ..+++ |+..|+.|.+|+.+++. +..+....+.+..+.|+|... .||.+|.||. |-|+.+.++.
T Consensus       266 -~~lll-SsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~  330 (1049)
T KOG0307|consen  266 -PRLLL-SSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTD  330 (1049)
T ss_pred             -chhhh-cccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCC
Confidence             24555 68889999999998876 457888888999999998765 8999999999 9999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.57  E-value=6.9e-13  Score=117.60  Aligned_cols=204  Identities=13%  Similarity=0.140  Sum_probs=143.0

Q ss_pred             CCcccCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecCCce-------eEEeeeecCCceEEEEEecCCC-eEEEEe
Q 020784           77 AESTSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE-------IFRRDFERGGGIGVVEMLFRCN-ILALVG  146 (321)
Q Consensus        77 ~~~~~~~~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~~~~-------~~~~~~~~~~~v~~v~~~~~~~-~~~~~s  146 (321)
                      .+.+..+|.++|..++|+|- ...||+|++|. |.||.+.....       +..... |...|+.|+|++... .+++++
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhcc
Confidence            45566889999999999995 45789999976 77998744322       223333 678899999988654 444444


Q ss_pred             CCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEE---ECCEEEEEEcCCcEEEEEEeccCCCCceEEEe
Q 020784          147 GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (321)
Q Consensus       147 g~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~---~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s  223 (321)
                             .|++|.|||+.+|+.+.++.+...|++++|+.++-.++   -|++|||||.++++.+..-..|.+....-++-
T Consensus       152 -------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  152 -------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             -------CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence                   47999999999999998999888999999998764443   35799999999999998876665543333322


Q ss_pred             eCCCceEEEeecC---CCCcEEEEeeCC--cc--eEEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCc
Q 020784          224 QGVGSLVLVCPGL---QKGQVRVEHYAS--KR--TKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT  292 (321)
Q Consensus       224 ~~~d~~~la~sGs---~dg~V~i~d~~~--~~--~~~l~~H~~~V~~vafspdg~~las~S~-Dgt~IrIWd~~tg~  292 (321)
                       -+++. ++.+|.   .+..+-+||-..  .+  +.++.. .+.|.-=-|.+|..++--++. |+. ||.|.+..-.
T Consensus       225 -l~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~  297 (472)
T KOG0303|consen  225 -LASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEP  297 (472)
T ss_pred             -eccCc-eeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCC
Confidence             22334 444464   366788888553  22  223333 334555556788776655544 777 9999998866

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.57  E-value=5.3e-14  Score=118.76  Aligned_cols=62  Identities=15%  Similarity=0.258  Sum_probs=55.6

Q ss_pred             CCCceEEEeecCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      .+|++++| +.+=||.|||+.+++. ++.+|+.|...|++++|+|+..++|.+|.|++ |-+|++
T Consensus       260 RpD~KIlA-TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL  322 (323)
T KOG0322|consen  260 RPDGKILA-TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL  322 (323)
T ss_pred             ccCCcEEe-ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence            46788998 4888999999888764 57899999999999999999999999999999 999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.57  E-value=1.7e-13  Score=117.48  Aligned_cols=164  Identities=15%  Similarity=0.203  Sum_probs=115.5

Q ss_pred             cCCceEEEEEecC-CCeEEEEeCCCCCCCCCCcEEEEeCCCCc------------EEEEEee----CCceeEEEEeCC--
Q 020784          126 RGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQSR------------CIGELSF----RSEVRSVKLRRD--  186 (321)
Q Consensus       126 ~~~~v~~v~~~~~-~~~~~~~sg~~~~~~~d~~v~iWD~~~~~------------~~~~~~~----~~~v~~v~~~~~--  186 (321)
                      |++.|..+.+... +.++...+       .|+.|.+||+++-.            |+...++    ...|..+.|-|.  
T Consensus        42 HgGsvNsL~id~tegrymlSGg-------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGG-------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             CCCccceeeeccccceEEeecC-------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            5788888877553 44443333       57999999987542            1101111    124666777552  


Q ss_pred             eEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCC-ceEEEeecCCCCcEEEEeeCCcc-eEEeecccccee
Q 020784          187 RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA  262 (321)
Q Consensus       187 ~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d-~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~  262 (321)
                      +++..  .|.++++||..+.+....|+... .+...++++-.. .+++| .|..+-.|++-|++.+. .++|.+|...|.
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA-~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIA-AGTRDVQVRLCDIASGSFSHTLSGHRDGVL  192 (397)
T ss_pred             ceeecccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEE-EecCCCcEEEEeccCCcceeeeccccCceE
Confidence            33333  46899999999988888776542 233444444332 46777 49999999999998877 579999999999


Q ss_pred             EEEECCCCC-EEEEEeCCCcEEEEEEcCCC-cEEEEEeC
Q 020784          263 CFALTQDGQ-LLATSSTKGTLVRIFNTLDG-TLLQEECC  299 (321)
Q Consensus       263 ~vafspdg~-~las~S~Dgt~IrIWd~~tg-~~i~~~~~  299 (321)
                      +|.|+|... .|||||.||. ||+||++.. -|+..+..
T Consensus       193 aV~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~  230 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQ  230 (397)
T ss_pred             EEEeccCceeEEEecCCCce-EEEEEeecccceeEEeec
Confidence            999999865 5899999999 999999875 56666643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.56  E-value=6.2e-12  Score=115.03  Aligned_cols=222  Identities=13%  Similarity=0.067  Sum_probs=140.4

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CcEEEEEecC-CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~--~gv~vw~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ....++|+|||++|++++.  ++|.+|+++. ++..........+....+.+.++++.++++..      .++.|.+||+
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~~  109 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------NANCVSVSPL  109 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc------CCCeEEEEEE
Confidence            4567899999999877654  5688999873 33322222212345567788888888887763      3589999998


Q ss_pred             CC-Cc---EEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEE-------EEeccCCCCceEEEeeCCCc
Q 020784          164 HQ-SR---CIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH-------QIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       164 ~~-~~---~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~-------~l~~~~~~~~~~~~s~~~d~  228 (321)
                      ++ +.   .+..+.....+..+.++++  .++++.  ++.|.+||+.+...+.       .+.....+ .-+.|+  +|+
T Consensus       110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p-~~~~~~--pdg  186 (330)
T PRK11028        110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP-RHMVFH--PNQ  186 (330)
T ss_pred             CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC-ceEEEC--CCC
Confidence            74 22   2333333345677778875  454443  4799999997633221       11122222 234554  555


Q ss_pred             eEEEeecCCCCcEEEEeeCC--cceE---Eeecc------ccceeEEEECCCCCEEEEEeC-CCcEEEEEEcCCC----c
Q 020784          229 LVLVCPGLQKGQVRVEHYAS--KRTK---FIMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDG----T  292 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~--~~~~---~l~~H------~~~V~~vafspdg~~las~S~-Dgt~IrIWd~~tg----~  292 (321)
                      .++.++...++.|.+|++..  +.+.   .+..+      ......++|+|+|++|.++.. +++ |.+|++.+.    +
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~~  265 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVLS  265 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeEE
Confidence            66655455588999999863  2222   22211      223446999999999888855 566 999999542    2


Q ss_pred             EEEEEeCCCcceeEEEeecCceEEEe
Q 020784          293 LLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       293 ~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      .+.....+.....+.+++||++|.++
T Consensus       266 ~~~~~~~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        266 FEGHQPTETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             EeEEEeccccCCceEECCCCCEEEEE
Confidence            44555555555677899999999885

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.54  E-value=3.4e-13  Score=118.91  Aligned_cols=194  Identities=10%  Similarity=0.168  Sum_probs=140.4

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcC-CcEEEEEecCCceeEE-eeee-cCCceEEEEEecCC-CeEEEEeCCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQ--DHGCFAAGTD-HGFRIYNCDPFREIFR-RDFE-RGGGIGVVEMLFRC-NILALVGGGPDPQYPL  155 (321)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasg~~-~gv~vw~~~~~~~~~~-~~~~-~~~~v~~v~~~~~~-~~~~~~sg~~~~~~~d  155 (321)
                      ..|...=+.++|||  .|+ |++|.. ++|++|...++..... +.+. |...|..++|++.- +.++.++       .|
T Consensus       208 ~ghk~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS-------~D  279 (440)
T KOG0302|consen  208 NGHKGEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS-------CD  279 (440)
T ss_pred             cccCccceeeecccccccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee-------cC
Confidence            35666778999999  444 677776 7799999887654332 2221 67788888998854 4555555       68


Q ss_pred             CcEEEEeCCCC---cEEEEEeeCCceeEEEEeCCeEEEE--EC-CEEEEEEcCC---cEEEEEEeccCCCCceEEEeeCC
Q 020784          156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVV--LE-QKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       156 ~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~--~~-~~I~iwd~~~---~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      +.|+|||++.+   .++..-.+.+.|..+.|+.+.-+++  .| ++++|||+++   ++.+.+|+.|..++.++.+++..
T Consensus       280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e  359 (440)
T KOG0302|consen  280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE  359 (440)
T ss_pred             ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence            99999999987   4566656677899999998754333  33 6999999975   56778999999999999999987


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcce-----------------EEeecc--ccceeEEEECCC-CCEEEEEeCCCcEEEEE
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRT-----------------KFIMAH--DSRIACFALTQD-GQLLATSSTKGTLVRIF  286 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~-----------------~~l~~H--~~~V~~vafspd-g~~las~S~Dgt~IrIW  286 (321)
                      +..+.|  ++.|..|.|||+....-                 ..+--|  ...|..|.|++. ..+|+|.+.||-  .||
T Consensus       360 ~s~iaa--sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf--nVf  435 (440)
T KOG0302|consen  360 DSVIAA--SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF--NVF  435 (440)
T ss_pred             CceEEe--ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce--eEE
Confidence            655444  67788999999863210                 122235  456899999976 457888888875  566


Q ss_pred             E
Q 020784          287 N  287 (321)
Q Consensus       287 d  287 (321)
                      -
T Consensus       436 k  436 (440)
T KOG0302|consen  436 K  436 (440)
T ss_pred             E
Confidence            4

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.8e-12  Score=111.71  Aligned_cols=192  Identities=14%  Similarity=0.144  Sum_probs=134.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .....|.++.|++.+..|++++-|| +++|++..........  |++++..+++.. ....++.+       .||+|+.+
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~-------~dg~vr~~   80 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGG-------LDGQVRRY   80 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEec-------cCceEEEE
Confidence            3446899999999887777666654 8999998875543433  578887777654 22333333       58999999


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeC--CeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      |+.++.....-.+...|.+++..+  +.++.+ .|++|++||.++...+-++...   ..+.+.+..+  ..|++ |..+
T Consensus        81 Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~---kkVy~~~v~g--~~LvV-g~~~  154 (323)
T KOG1036|consen   81 DLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG---KKVYCMDVSG--NRLVV-GTSD  154 (323)
T ss_pred             EecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC---ceEEEEeccC--CEEEE-eecC
Confidence            999988766667778899999874  333333 5789999999975544444433   2444555443  34443 8889


Q ss_pred             CcEEEEeeCCcceEE---eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          239 GQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       239 g~V~i~d~~~~~~~~---l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      ..|.|||+.+.....   -..-+-.++||++-|++.=+|.+|-||. |-|=.+...
T Consensus       155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s  209 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDS  209 (323)
T ss_pred             ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCc
Confidence            999999987643221   1234456899999999888889999998 877655544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1e-12  Score=113.71  Aligned_cols=218  Identities=14%  Similarity=0.114  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCEEEEEcC--CcEEEEEecCC---ceeEE------eeee--cCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           88 LLHISFNQDHGCFAAGTD--HGFRIYNCDPF---REIFR------RDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~--~gv~vw~~~~~---~~~~~------~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      -+.|.|.||-+-++..-.  +.+++|.+...   +..+.      .++.  |.-.+..+-+...+..+++++       .
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas-------~  207 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS-------L  207 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec-------C
Confidence            567999999886665443  56889876422   11110      1111  122233333344455566665       6


Q ss_pred             CCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE---CCEEEEEEc---CCc-----EEEEEEeccCCCCceEEE
Q 020784          155 LNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNF---ADL-----KLLHQIETIANPKGLCAV  222 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~---~~~I~iwd~---~~~-----~~~~~l~~~~~~~~~~~~  222 (321)
                      |.+|.+||++ |+.+..+.... .-+..+++|++.+++.   .-.|++|.+   .+|     ..+..+++|...+...+|
T Consensus       208 dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF  286 (420)
T KOG2096|consen  208 DTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF  286 (420)
T ss_pred             CCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence            7999999998 88887776543 3444566666433332   348999987   222     223356777776666677


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCCc--------ceEEe----eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYASK--------RTKFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~~--------~~~~l----~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +++.  .-++ +.+.||+++|||..-+        .+++.    .+-.+....++++|+|+.||... ..+ +++|..++
T Consensus       287 sn~S--~r~v-tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~-l~~~~se~  361 (420)
T KOG2096|consen  287 SNSS--TRAV-TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSD-LKVFASED  361 (420)
T ss_pred             CCCc--ceeE-EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCc-eEEEEccc
Confidence            6654  5555 5799999999986411        12222    22334455899999999998654 556 99999999


Q ss_pred             CcEEEEEeCCCcceeE--EEeecCceEEEe
Q 020784          291 GTLLQEECCPSISAQS--GLWLSSAWLRVL  318 (321)
Q Consensus       291 g~~i~~~~~g~~~~~~--~~s~d~~~la~~  318 (321)
                      |+...++++.|...+.  +++.+|+|+|.+
T Consensus       362 g~~~~~~e~~h~~~Is~is~~~~g~~~atc  391 (420)
T KOG2096|consen  362 GKDYPELEDIHSTTISSISYSSDGKYIATC  391 (420)
T ss_pred             CccchhHHHhhcCceeeEEecCCCcEEeee
Confidence            9999888877776654  667888999874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.53  E-value=3.2e-13  Score=117.07  Aligned_cols=192  Identities=19%  Similarity=0.198  Sum_probs=138.8

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEe-cCCceeEEe------eeecCCceEEEEEecCCC-eEEEEeCCCCCCCCCCcE
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNC-DPFREIFRR------DFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~-~~~~~~~~~------~~~~~~~v~~v~~~~~~~-~~~~~sg~~~~~~~d~~v  158 (321)
                      .-.|++|+|||..|.+|-.+.|+|||+ .+++..-.+      ++...+-+.++++++... .+++.+       .-+.+
T Consensus       160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-------Y~q~~  232 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-------YGQRV  232 (406)
T ss_pred             hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec-------cccee
Confidence            346899999999999999999999998 444322111      111134556667766544 555555       34778


Q ss_pred             EEEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE--CCEEEEEEcCC-cEEEEEEeccCC-CCceEEEeeCCCceEE
Q 020784          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL--EQKIFVYNFAD-LKLLHQIETIAN-PKGLCAVSQGVGSLVL  231 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~-~~~~~~l~~~~~-~~~~~~~s~~~d~~~l  231 (321)
                      -|+.-..+..+..+..+ +-|+-++|+++  +++++.  +.+|..||++. .+.+..+..|.. ....+-|..++++.+|
T Consensus       233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L  312 (406)
T KOG2919|consen  233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL  312 (406)
T ss_pred             eeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee
Confidence            88887777766665544 57999999875  566654  56999999975 556666766654 3345666777788999


Q ss_pred             EeecCCCCcEEEEeeCC-cc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          232 VCPGLQKGQVRVEHYAS-KR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~-~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      | +|+.||.|++||++. +. ...+..|+..|+.|+++|--.++||+|-.    |+|-..+
T Consensus       313 a-sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq----r~f~~~~  368 (406)
T KOG2919|consen  313 A-SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ----RIFKYPK  368 (406)
T ss_pred             e-ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc----eeecCCC
Confidence            9 699999999999876 33 66888999999999999999999998733    4564443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=4.1e-11  Score=109.76  Aligned_cols=227  Identities=17%  Similarity=0.244  Sum_probs=159.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCc-eeEEeeeecCCceEEEEE-ecCCCeEEEEeCCCCCCCCCCc
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR-EIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~-~~~~~~~~~~~~v~~v~~-~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ...+...|.++.|.+++..++.++. ..+.+|+..... ........+...+..+.. ..+...++...+.     .|+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~  135 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS-----LDGT  135 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCC-----CCcc
Confidence            4567789999999999999998875 568899988775 332332201124555555 4445533333322     3789


Q ss_pred             EEEEeCCC-CcEEEEEeeC-CceeEEEEeCCe--EEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEE
Q 020784          158 VMIWDDHQ-SRCIGELSFR-SEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       158 v~iWD~~~-~~~~~~~~~~-~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      +++||... ......+..+ ..|..+.|+++.  ++.+.  ++.+++|++..+..+..+..|...+..+++++  ++..+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~  213 (466)
T COG2319         136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP--DGGLL  213 (466)
T ss_pred             EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC--CcceE
Confidence            99999987 5555555544 578889998865  33333  67999999998888888888777777777774  44434


Q ss_pred             EeecCCCCcEEEEeeCCcce-E-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE-EEEEeCCCcceeE--
Q 020784          232 VCPGLQKGQVRVEHYASKRT-K-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEECCPSISAQS--  306 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~~-~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~-i~~~~~g~~~~~~--  306 (321)
                      +.+++.|+.|++|+...+.. . .+.+|...+ ...|++++.++++++.|+. +++|++..... +..+ .++.....  
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~-~~~~~~v~~~  290 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTL-SGHSSSVLSV  290 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEE-ecCCccEEEE
Confidence            43468999999998775553 3 588898886 4489999999999999999 99999997765 5555 45543333  


Q ss_pred             EEeecCceEEE
Q 020784          307 GLWLSSAWLRV  317 (321)
Q Consensus       307 ~~s~d~~~la~  317 (321)
                      .+.+++.+++.
T Consensus       291 ~~~~~~~~~~~  301 (466)
T COG2319         291 AFSPDGKLLAS  301 (466)
T ss_pred             EECCCCCEEEE
Confidence            44454566654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.51  E-value=4.3e-14  Score=135.13  Aligned_cols=224  Identities=10%  Similarity=0.099  Sum_probs=156.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+|.+.|+|+.|...|.++++|+++- |+||.+++..+...... |.+.+..+++..+.-.++.++       .|.-|++
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS-------~D~vIrv  258 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAAS-------NDKVIRV  258 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhhhhhhcc-------cCceEEE
Confidence            67889999999999999999999966 77999999887655554 677888877765544445444       6889999


Q ss_pred             EeCCCCcEEEEEee-CCceeEEEEeCCeEEEEECCEEEEEEcCC--------------cEEEEEEeccCC----------
Q 020784          161 WDDHQSRCIGELSF-RSEVRSVKLRRDRIIVVLEQKIFVYNFAD--------------LKLLHQIETIAN----------  215 (321)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~I~iwd~~~--------------~~~~~~l~~~~~----------  215 (321)
                      |-+..+..+.-+.. .+.|++++|++.. ...-++++++||.+-              +.++..+.....          
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            99999987766654 4689999999866 223357999999871              111111110000          


Q ss_pred             ------CCceEEEeeCCCceEEEe----------ecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCC-CCEEEEEe
Q 020784          216 ------PKGLCAVSQGVGSLVLVC----------PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSS  277 (321)
Q Consensus       216 ------~~~~~~~s~~~d~~~la~----------sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspd-g~~las~S  277 (321)
                            ...+++.  .....+++.          +.-.+-.+++|++.++. ++.+.+|...+.-+.++|- .+...+++
T Consensus       338 ~ea~n~e~~~l~~--~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag  415 (1113)
T KOG0644|consen  338 GEARNHEFEQLAW--RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG  415 (1113)
T ss_pred             cccccchhhHhhh--hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence                  0001111  111122221          12223345558877765 5688999999999999985 45667899


Q ss_pred             CCCcEEEEEEcCCCcEEEEEeCCCcceeE-EEeecCceEEE
Q 020784          278 TKGTLVRIFNTLDGTLLQEECCPSISAQS-GLWLSSAWLRV  317 (321)
Q Consensus       278 ~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~-~~s~d~~~la~  317 (321)
                      .||. +-|||+-.|..++.+..|+.+..- .||.||+-+++
T Consensus       416 ~dgs-t~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  416 YDGS-TIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             CCCc-eEeeecccCCcceeeecccceeeccccCCCCceEec
Confidence            9999 889999999999999888765544 88999876654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=8.9e-12  Score=117.14  Aligned_cols=199  Identities=14%  Similarity=0.140  Sum_probs=147.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ......|.+++|.+.|++|.+|.+..|.-||+.+.+..+.... .++.|-.++.++....+++.+       +||.+...
T Consensus        66 g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~~l~Igc-------ddGvl~~~  137 (691)
T KOG2048|consen   66 GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENTILAIGC-------DDGVLYDF  137 (691)
T ss_pred             cCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccceEEeec-------CCceEEEE
Confidence            3444689999999888888888888889999999998877765 467888888888888887776       67877777


Q ss_pred             eCCCCcEEEEEee---CCceeEEEEeCCeE--EEEE-CCEEEEEEcCCcEEEEEEecc-----C-CCCceEEEeeCCCce
Q 020784          162 DDHQSRCIGELSF---RSEVRSVKLRRDRI--IVVL-EQKIFVYNFADLKLLHQIETI-----A-NPKGLCAVSQGVGSL  229 (321)
Q Consensus       162 D~~~~~~~~~~~~---~~~v~~v~~~~~~~--~~~~-~~~I~iwd~~~~~~~~~l~~~-----~-~~~~~~~~s~~~d~~  229 (321)
                      +...+.....-.+   .+.|.++.|+++..  +.++ |+.|++||...++.++.+...     . .+..+.++-.=-++ 
T Consensus       138 s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-  216 (691)
T KOG2048|consen  138 SIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-  216 (691)
T ss_pred             ecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence            7777665444332   35799999999765  4444 457999999988877733221     1 22223333222233 


Q ss_pred             EEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          230 VLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      .|| +|+.-|+|.+||...+.+ ..++.|...|.|++-.+++.+|.+++.|+.++++.....
T Consensus       217 tI~-sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  217 TIA-SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             cEE-EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            455 599999999999988774 478899999999999999999999999999554444333

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2e-13  Score=125.73  Aligned_cols=206  Identities=15%  Similarity=0.167  Sum_probs=140.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc----------eeEEeeeecCCceEEEEEecCCCeEEEEeCCCC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~----------~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      +.|.++|.|++..++|..+.+|+-|| |+.|++....          ....... |.+.+..++++.....++.++    
T Consensus       341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs----  415 (577)
T KOG0642|consen  341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCS----  415 (577)
T ss_pred             ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeec----
Confidence            78999999999999999999999866 8899763211          1111222 566777777777666677777    


Q ss_pred             CCCCCCcEEEEeCCCCcE--EEEEeeCCceeEEEEeCCeEEEE-ECCEEEEEEcCCcEEEEEE---eccCCC-----Cce
Q 020784          151 PQYPLNKVMIWDDHQSRC--IGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI---ETIANP-----KGL  219 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~-~~~~I~iwd~~~~~~~~~l---~~~~~~-----~~~  219 (321)
                         .||+|++|+......  ...-+-++..+++.+...+.+.. .+...+.+++.+++....+   .....+     -.+
T Consensus       416 ---~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i  492 (577)
T KOG0642|consen  416 ---SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI  492 (577)
T ss_pred             ---CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc
Confidence               689999999876655  11122234567777765553333 3345555555544443333   221111     112


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      ..+-.++.+.+.. ++..|+.|+++|..++. +....+|...|+++++.|+|.+|++++.||. |++|.+....|+...
T Consensus       493 n~vVs~~~~~~~~-~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es  569 (577)
T KOG0642|consen  493 NKVVSHPTADITF-TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLES  569 (577)
T ss_pred             ceEEecCCCCeeE-ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecc
Confidence            2222333444444 58999999998776654 6788999999999999999999999999999 999999887777654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.50  E-value=2.8e-12  Score=111.28  Aligned_cols=223  Identities=11%  Similarity=0.090  Sum_probs=147.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCC------------ceeEEeeeecCCceEEEEEe-------cCCCeEEEE
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPF------------REIFRRDFERGGGIGVVEML-------FRCNILALV  145 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~------------~~~~~~~~~~~~~v~~v~~~-------~~~~~~~~~  145 (321)
                      +-...+.|+|||..|.+-+. +++++|++...            +......+..+..|...+|-       ++.+++++.
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            45667999999999998887 66889987321            11111111124455555553       456677766


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEe---eCC---ceeEEEEeCCe--EEEEECCEEEEEEc-CCcEEEE---EEec-
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS---FRS---EVRSVKLRRDR--IIVVLEQKIFVYNF-ADLKLLH---QIET-  212 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~---~~~---~v~~v~~~~~~--~~~~~~~~I~iwd~-~~~~~~~---~l~~-  212 (321)
                      +       .+.-|++||.-+|+....+.   +-.   .-.+++|+++.  ++++....||+||+ +.+..-.   ++.. 
T Consensus       130 s-------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  130 S-------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             c-------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc
Confidence            6       67999999999998765543   222   24578898875  55555679999999 4443211   1111 


Q ss_pred             c---CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC-cceEEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEEE
Q 020784          213 I---ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFN  287 (321)
Q Consensus       213 ~---~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~-~~~~~l~~H~~~V~~vafspdg~~las~S~-Dgt~IrIWd  287 (321)
                      .   ...+.+.+++|.. -..+|+ |+....+-|+.... +++..+-+|.+.|+.+.|.++|..|.+|+. |.. |-.||
T Consensus       203 k~gq~giisc~a~sP~~-~~~~a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk-Il~WD  279 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMD-SKTLAV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK-ILCWD  279 (406)
T ss_pred             cccccceeeeeeccCCC-Ccceee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCe-EEEEe
Confidence            1   1223345556543 246675 99999999955444 557788899999999999999999999987 555 99999


Q ss_pred             cCC-CcEEEEEeCC--CcceeEEE--eecCceEEEe
Q 020784          288 TLD-GTLLQEECCP--SISAQSGL--WLSSAWLRVL  318 (321)
Q Consensus       288 ~~t-g~~i~~~~~g--~~~~~~~~--s~d~~~la~~  318 (321)
                      ++. +..+..+.+.  ..+.++.|  .++|++||.-
T Consensus       280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG  315 (406)
T KOG2919|consen  280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG  315 (406)
T ss_pred             ehhccchhhhhhhhccCccceEEEecCCCCceeecc
Confidence            985 4556665433  23455544  4777998864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.49  E-value=9.8e-13  Score=123.38  Aligned_cols=215  Identities=10%  Similarity=0.110  Sum_probs=162.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      .|..++|-|||..|+.+.++.+.|||...+........ |...|.+|+++.++..++..+       .|+.|.||.-+-.
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~-------aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCC-------CceeEEEeccccc
Confidence            79999999999999988888899999998887766665 788999999999999887666       6899999986532


Q ss_pred             cEEEEEeeCCceeEEEEeC--CeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEE
Q 020784          167 RCIGELSFRSEVRSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (321)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~--~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~  244 (321)
                      .. ....+...|.++.|+|  ..++.|+=+..-+|...+... .   -+.....+++.++..||++++. |-.||+|.|-
T Consensus        86 G~-LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V-~---K~kss~R~~~CsWtnDGqylal-G~~nGTIsiR  159 (1081)
T KOG1538|consen   86 GI-LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV-S---KHKSSSRIICCSWTNDGQYLAL-GMFNGTISIR  159 (1081)
T ss_pred             ce-eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH-H---hhhhheeEEEeeecCCCcEEEE-eccCceEEee
Confidence            22 2345566788999987  356666656778888764322 1   2223456778888889999996 9999999997


Q ss_pred             eeCCcceEEe---eccccceeEEEECCCC-----CEEEEEeCCCcEEEEEEcCCCcEEE-EEeCCCcceeEEEeecCceE
Q 020784          245 HYASKRTKFI---MAHDSRIACFALTQDG-----QLLATSSTKGTLVRIFNTLDGTLLQ-EECCPSISAQSGLWLSSAWL  315 (321)
Q Consensus       245 d~~~~~~~~l---~~H~~~V~~vafspdg-----~~las~S~Dgt~IrIWd~~tg~~i~-~~~~g~~~~~~~~s~d~~~l  315 (321)
                      +....+...+   -+-+++|.+|+|+|+.     ..++...+..| +..+.+ +|+.+. .-.-+.+...+++.++|.|+
T Consensus       160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYI  237 (1081)
T ss_pred             cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeecccccCCCCchhheeccCCcEE
Confidence            6544433222   2478899999999873     47888888888 765554 566665 44456778888999999998


Q ss_pred             EE
Q 020784          316 RV  317 (321)
Q Consensus       316 a~  317 (321)
                      .+
T Consensus       238 Li  239 (1081)
T KOG1538|consen  238 LL  239 (1081)
T ss_pred             EE
Confidence            65

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.2e-13  Score=126.19  Aligned_cols=192  Identities=14%  Similarity=0.151  Sum_probs=145.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC----CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~----~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      -.|..+|+.+.|+.+|+|||+..-    +.|.|..+...+...-... ..+.+..+.+++....+++++        .+.
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaT--------q~~  588 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVAT--------QRS  588 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEe--------ccc
Confidence            346669999999999999997654    4577888765443211111 267788889988888887776        478


Q ss_pred             EEEEeCCCCcEEEEEe-eCCceeEEEEeC--CeEEEEE-CCEEEEEEcC-CcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVL-EQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~-~~~~v~~v~~~~--~~~~~~~-~~~I~iwd~~-~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      |+|||+..+..+..+. +...|..+++|+  +.+++++ +++++.||+. ..+..+++..|...+..++++..-  .++|
T Consensus       589 vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry--PLfa  666 (733)
T KOG0650|consen  589 VRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY--PLFA  666 (733)
T ss_pred             eEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc--ceee
Confidence            9999998877665543 444677888887  6666664 6799999994 456777888887777777777654  7777


Q ss_pred             eecCCCCcEEEE-e-----eCCc----ceEEeeccccc----eeEEEECCCCCEEEEEeCCCcEEEEE
Q 020784          233 CPGLQKGQVRVE-H-----YASK----RTKFIMAHDSR----IACFALTQDGQLLATSSTKGTLVRIF  286 (321)
Q Consensus       233 ~sGs~dg~V~i~-d-----~~~~----~~~~l~~H~~~----V~~vafspdg~~las~S~Dgt~IrIW  286 (321)
                       +|+.||++.|+ .     +...    +++.|++|...    |..+.|+|...+|.|++.||+ ||+|
T Consensus       667 -s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t-irlf  732 (733)
T KOG0650|consen  667 -SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT-IRLF  732 (733)
T ss_pred             -eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCce-EEee
Confidence             69999999983 2     2122    34578999876    999999999999999999999 9998

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=5.3e-12  Score=121.74  Aligned_cols=213  Identities=14%  Similarity=0.136  Sum_probs=146.6

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCC---eEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        91 v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~---~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      -.|++|++++.....+.|.||...++.++...+. |...+..+.+.+...   ++.+++       .+|+|++||...+.
T Consensus        22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~-~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~vwd~~~~~   93 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLED-HTAPLTSVIVLPSSENANYLIVCS-------LDGTIRVWDWSDGE   93 (792)
T ss_pred             cccccCCcEEEEeeCCEEEEEecchHhhhhhccc-ccCccceeeecCCCccceEEEEEe-------cCccEEEecCCCcE
Confidence            3599999999999999999999999988765554 556666666655443   444555       68999999999988


Q ss_pred             EEEEEeeCCceeEEEEe------------------------CC-------------------------------------
Q 020784          168 CIGELSFRSEVRSVKLR------------------------RD-------------------------------------  186 (321)
Q Consensus       168 ~~~~~~~~~~v~~v~~~------------------------~~-------------------------------------  186 (321)
                      .+.++..+.++..+.+.                        .+                                     
T Consensus        94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge  173 (792)
T KOG1963|consen   94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE  173 (792)
T ss_pred             EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence            88776543332221110                        00                                     


Q ss_pred             eEEEEECCEEEEEEcCCcEEEEEEe-----ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC-----cceEEeec
Q 020784          187 RIIVVLEQKIFVYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMA  256 (321)
Q Consensus       187 ~~~~~~~~~I~iwd~~~~~~~~~l~-----~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~-----~~~~~l~~  256 (321)
                      ...++....+.+|+..+.. .+...     .|.-...+.+++  +.+.++| +|..||.|.+|.--.     .....+.=
T Consensus       174 ~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~s--pn~~~~A-a~d~dGrI~vw~d~~~~~~~~t~t~lHW  249 (792)
T KOG1963|consen  174 FKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALS--PNERYLA-AGDSDGRILVWRDFGSSDDSETCTLLHW  249 (792)
T ss_pred             EEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEec--cccceEE-EeccCCcEEEEeccccccccccceEEEe
Confidence            2333445677888876543 11110     121122344444  4558888 599999999986332     22456777


Q ss_pred             cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE--eCCCcceeEEEeecCceEEEe
Q 020784          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE--CCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       257 H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~--~~g~~~~~~~~s~d~~~la~~  318 (321)
                      |...|++++|+++|.+|.||+..|- +-+|.+.|++  ++|  +-|.....+.+|+||.+-++.
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLV  310 (792)
T ss_pred             cccccceeEEecCCceEeecccceE-EEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEE
Confidence            9999999999999999999999999 7799999998  333  344555556788999887664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.48  E-value=3.3e-12  Score=120.28  Aligned_cols=213  Identities=13%  Similarity=0.156  Sum_probs=139.7

Q ss_pred             CCcccCCCCCCeEEEEEcCCCC---EEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           77 AESTSSSPPPTLLHISFNQDHG---CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        77 ~~~~~~~~~~~V~~v~fs~dg~---~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      ......+|.++|+|+.|-|+.+   ++++|+.|+ |++|.+..........+. .+.+.++++.-.........      
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-g~~~~~~cv~a~~~~~~~~~------  118 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-GHCKECVCVVARSSVMTCKA------  118 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-CcceeEEEEEeeeeEEEeec------
Confidence            3444578999999999999888   778887765 889999844444444442 23455555543332222222      


Q ss_pred             CCCCcEEEEeCCCCc--EEEEEeeCC-ce--eEEEE--eCCeEEEEEC---CEEEEEEcC--CcEEEEEEeccCCCCceE
Q 020784          153 YPLNKVMIWDDHQSR--CIGELSFRS-EV--RSVKL--RRDRIIVVLE---QKIFVYNFA--DLKLLHQIETIANPKGLC  220 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~--~~~~~~~~~-~v--~~v~~--~~~~~~~~~~---~~I~iwd~~--~~~~~~~l~~~~~~~~~~  220 (321)
                       .|+++.+||.+..+  +...+.+.- .+  .+++.  +++.++.+.+   ..|.+|.-.  +.+.+..+.+|..++..+
T Consensus       119 -ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl  197 (764)
T KOG1063|consen  119 -ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL  197 (764)
T ss_pred             -cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence             57999999996555  333333321 22  23332  3444444433   256666543  456778889999999988


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCCcc----------------------e----------EEeeccccceeEEEECC
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR----------------------T----------KFIMAHDSRIACFALTQ  268 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~~~----------------------~----------~~l~~H~~~V~~vafsp  268 (321)
                      +|...+.+.++++||+.|..||||.+....                      +          ..+.||.+.|+++-|+|
T Consensus       198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p  277 (764)
T KOG1063|consen  198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP  277 (764)
T ss_pred             hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc
Confidence            887665545555589999999999753110                      1          12459999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEcC--CCcEEEEEe
Q 020784          269 DGQLLATSSTKGTLVRIFNTL--DGTLLQEEC  298 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~~--tg~~i~~~~  298 (321)
                      .+..|.|+|.|.+ +-||.-.  +|-=+...+
T Consensus       278 ~~~~LLSASaDks-miiW~pd~~tGiWv~~vR  308 (764)
T KOG1063|consen  278 EGLDLLSASADKS-MIIWKPDENTGIWVDVVR  308 (764)
T ss_pred             chhhheecccCcc-eEEEecCCccceEEEEEE
Confidence            9988999999999 7799654  444333443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.48  E-value=1.2e-10  Score=106.70  Aligned_cols=205  Identities=19%  Similarity=0.283  Sum_probs=151.0

Q ss_pred             CeEEEEE-cCCCC-EEEEEcC-C-cEEEEEecC-CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           87 TLLHISF-NQDHG-CFAAGTD-H-GFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        87 ~V~~v~f-s~dg~-~lasg~~-~-gv~vw~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .+..+.+ ++++. +++..+. + .+.+|+... ......... |...+..+.+.+++..++..+.      .++.+++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~  183 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGSS------LDGTIKLW  183 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCCEEEecCC------CCCceEEE
Confidence            5777777 88888 5554343 4 477999987 444444443 6778888888888875555431      27999999


Q ss_pred             eCCCCcEEEEEee-CCceeEEEEeCCe--EEEE--ECCEEEEEEcCCcEEEE-EEeccCCCCceEEEeeCCCceEEEeec
Q 020784          162 DDHQSRCIGELSF-RSEVRSVKLRRDR--IIVV--LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       162 D~~~~~~~~~~~~-~~~v~~v~~~~~~--~~~~--~~~~I~iwd~~~~~~~~-~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +...+..+..+.. ...|.++.+.++.  +++.  .++.|++||...++.+. .+..|.... ...+++++  .+++ ++
T Consensus       184 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~  259 (466)
T COG2319         184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG--SLLA-SG  259 (466)
T ss_pred             EcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC--CEEE-Ee
Confidence            9998777777765 4579999998765  3333  34699999998888877 577766554 44565554  5555 58


Q ss_pred             CCCCcEEEEeeCCcc--eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe-CCCcc
Q 020784          236 LQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC-CPSIS  303 (321)
Q Consensus       236 s~dg~V~i~d~~~~~--~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~-~g~~~  303 (321)
                      +.|+.+++|+.....  +..+.+|...|.++.|+|++..+++++.|+. +++||+.++....... .++..
T Consensus       260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~  329 (466)
T COG2319         260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEG  329 (466)
T ss_pred             cCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCC
Confidence            999999999987544  3445789999999999999999999999987 9999999988777664 34443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=9.4e-12  Score=117.96  Aligned_cols=198  Identities=13%  Similarity=0.058  Sum_probs=127.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-C---cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~-~---gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .+...|.+.+|+|||++||..+. +   .+.+||+.+++......+  .+......|+++++.++++..      .++.+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG~~La~~~~------~~g~~  272 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDGSRLAFASS------KDGVL  272 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCCCEEEEEEe------cCCcE
Confidence            34567999999999999997764 2   378999987754333332  334456789999998887753      23555


Q ss_pred             EE--EeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC--CEEEEEEcC--CcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          159 MI--WDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE--QKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       159 ~i--WD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~--~~I~iwd~~--~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      .|  ||+.++...........+....|+++.  ++.+.+  +...||++.  .+. ...+ .+..  ....+  .+|+..
T Consensus       273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l-~~~~--~~~~~--SpDG~~  346 (429)
T PRK01742        273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASLV-GGRG--YSAQI--SADGKT  346 (429)
T ss_pred             EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEe-cCCC--CCccC--CCCCCE
Confidence            54  566666654433334467788898864  444443  567777663  332 2223 2222  22334  445577


Q ss_pred             EEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc--CCCcEEEEEe
Q 020784          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT--LDGTLLQEEC  298 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~--~tg~~i~~~~  298 (321)
                      +++.+ .++ +.+||+.++....+..+. ...+++|+|||++|+.++.++. +++|++  .+|++++++.
T Consensus       347 ia~~~-~~~-i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        347 LVMIN-GDN-VVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLP  412 (429)
T ss_pred             EEEEc-CCC-EEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEcc
Confidence            76533 354 455888776654443322 3467889999999999999999 889986  4688888885

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=5e-12  Score=105.87  Aligned_cols=154  Identities=9%  Similarity=0.113  Sum_probs=105.7

Q ss_pred             EEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC---------Cc-E-EEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcC
Q 020784          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ---------SR-C-IGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA  202 (321)
Q Consensus       134 ~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~---------~~-~-~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~  202 (321)
                      ++++...+++.+.       .+|+|.+..++.         ++ . +.+-.++++++.+.|+.+.++++.++.|+=|..+
T Consensus        17 a~sp~~~~l~agn-------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~   89 (325)
T KOG0649|consen   17 AISPSKQYLFAGN-------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWN   89 (325)
T ss_pred             hhCCcceEEEEec-------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeeh
Confidence            4556666655544       568888887543         11 2 2223355689999999999999999999999875


Q ss_pred             CcEE------EEEEec--c-----CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECC
Q 020784          203 DLKL------LHQIET--I-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQ  268 (321)
Q Consensus       203 ~~~~------~~~l~~--~-----~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafsp  268 (321)
                      ....      +-.++.  +     ...+..+.+.|..+..++|  | .|+.++-||+.++.++ ++++|+.+|.+|+--.
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A--g-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA--G-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe--c-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            4322      111111  1     1123444555443333333  4 7888888999998864 8999999999999843


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      ....+.||++||+ +||||++++++++.+.
T Consensus       167 ~~~qilsG~EDGt-vRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  167 ANGQILSGAEDGT-VRVWDTKTQKHVSMIE  195 (325)
T ss_pred             cCcceeecCCCcc-EEEEeccccceeEEec
Confidence            3444679999999 9999999999998764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.45  E-value=7.6e-13  Score=114.90  Aligned_cols=198  Identities=15%  Similarity=0.155  Sum_probs=134.9

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCceeEEeeee--cCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ++|+..|+.+.|.|+. +++++++.|. ||+||+++..++...-.-  |.+.|..++++.++..++.++       .|..
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG-------mDhs  204 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG-------MDHS  204 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC-------Ccce
Confidence            6788899999999987 6788888755 999999999876654321  677889999999998777766       7899


Q ss_pred             EEEEeCCCCcEEEEEe------------------eCCc-----------eeEEEEeCCeEEE-EECCEEEEEEcCC-cEE
Q 020784          158 VMIWDDHQSRCIGELS------------------FRSE-----------VRSVKLRRDRIIV-VLEQKIFVYNFAD-LKL  206 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~------------------~~~~-----------v~~v~~~~~~~~~-~~~~~I~iwd~~~-~~~  206 (321)
                      +++|++...+....++                  .+.+           |-++.|-.+.++. ..++.|..|...+ .+.
T Consensus       205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhh
Confidence            9999988443221111                  0111           2222222333333 2457999998732 222


Q ss_pred             EE-------------EEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce---EEeecc--ccceeEEEECC
Q 020784          207 LH-------------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAH--DSRIACFALTQ  268 (321)
Q Consensus       207 ~~-------------~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~---~~l~~H--~~~V~~vafsp  268 (321)
                      ++             .++-..-.+-.+.|+.++-+..||+ |...|.|.+||+.....   .++..+  ...|+..+||.
T Consensus       285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~-gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~  363 (385)
T KOG1034|consen  285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL-GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR  363 (385)
T ss_pred             hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh-ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc
Confidence            22             2222111222456677776778885 99999999999976432   244333  45799999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEc
Q 020784          269 DGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~  288 (321)
                      ||.+|+-..+|++ |--||.
T Consensus       364 dgs~lv~vcdd~~-Vwrwdr  382 (385)
T KOG1034|consen  364 DGSILVLVCDDGT-VWRWDR  382 (385)
T ss_pred             cCcEEEEEeCCCc-EEEEEe
Confidence            9999999999999 766764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=1.1e-11  Score=109.83  Aligned_cols=213  Identities=15%  Similarity=0.193  Sum_probs=144.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCc----eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~----~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..+|..+.- .||.+++|-+.+.+.+|+.+...    ....+..  +..+..+.-+.....++..+|-.    +-+.++|
T Consensus       105 ~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke----~~n~lki  177 (412)
T KOG3881|consen  105 TKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKE----NINELKI  177 (412)
T ss_pred             cccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchh----cccceee
Confidence            345555443 25666666555668899887322    2222222  45666766666555555555443    2378999


Q ss_pred             EeCCCCcEEEEEe--------eCCc--eeEEEEeCC----eEEEEEC-CEEEEEEcCCc-EEEEEEeccCCCCceEEEee
Q 020784          161 WDDHQSRCIGELS--------FRSE--VRSVKLRRD----RIIVVLE-QKIFVYNFADL-KLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       161 WD~~~~~~~~~~~--------~~~~--v~~v~~~~~----~~~~~~~-~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~  224 (321)
                      ||++..+.+..-+        ...+  ++++.|-+.    .++.++. +++|+||.+.+ +.+..|....+++..+..-+
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p  257 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP  257 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence            9998875554321        1222  345666543    4555554 79999999754 56777777666655555554


Q ss_pred             CCCceEEEeecCCCCcEEEEeeCCcceE--EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~~~~~--~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                        +++++. .|...|.+..+|.+.+.+.  .+++..+.|++|-.+|.+++||+||-|+. |||+|+.+.++++.......
T Consensus       258 --~gn~Iy-~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYvKs~  333 (412)
T KOG3881|consen  258 --SGNFIY-TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYVKSR  333 (412)
T ss_pred             --CCcEEE-EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhhhcc
Confidence              446665 4999999999999887754  58999999999999999999999999999 99999999988887666555


Q ss_pred             ceeEEE
Q 020784          303 SAQSGL  308 (321)
Q Consensus       303 ~~~~~~  308 (321)
                      ...+.+
T Consensus       334 lt~il~  339 (412)
T KOG3881|consen  334 LTFILL  339 (412)
T ss_pred             ccEEEe
Confidence            444433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.44  E-value=6.9e-11  Score=102.88  Aligned_cols=156  Identities=12%  Similarity=0.169  Sum_probs=111.2

Q ss_pred             CCCCCeEEEEEcC-----CCCEEEEEcCCcEEEEEecCCc--eeEEeeee--cCCceEEEEEecCC---CeEEEEeCCCC
Q 020784           83 SPPPTLLHISFNQ-----DHGCFAAGTDHGFRIYNCDPFR--EIFRRDFE--RGGGIGVVEMLFRC---NILALVGGGPD  150 (321)
Q Consensus        83 ~~~~~V~~v~fs~-----dg~~lasg~~~gv~vw~~~~~~--~~~~~~~~--~~~~v~~v~~~~~~---~~~~~~sg~~~  150 (321)
                      .|+.+|..++|++     +-+.+|+.+.+.+.||++....  ..+....+  |+....-++|..+.   +-+.+++|   
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---  112 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---  112 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---
Confidence            4666899999995     3357888888888999986544  22222111  34456666776543   33434443   


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCe--EEE-EE-CCEEEEEEcCCcEEEEEEe---ccCCCCceEEE
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIV-VL-EQKIFVYNFADLKLLHQIE---TIANPKGLCAV  222 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--~~~-~~-~~~I~iwd~~~~~~~~~l~---~~~~~~~~~~~  222 (321)
                         .-|-|||.|+.++++...+..++ .|..+.+++.+  +++ ++ |..||+||++++.++..|.   +|...+..++|
T Consensus       113 ---~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  113 ---YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             ---ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence               35999999999999988877665 78899998865  444 43 4599999999999998884   46666666666


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeC
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYA  247 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~  247 (321)
                      +.++  ..++ |++.|-.+++|++.
T Consensus       190 ~~~g--d~i~-ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  190 SLDG--DRIA-SCGMDHSLKLWRLN  211 (385)
T ss_pred             cCCC--Ceee-ccCCcceEEEEecC
Confidence            6554  5777 68999999999865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.43  E-value=6.1e-12  Score=117.53  Aligned_cols=218  Identities=10%  Similarity=0.099  Sum_probs=139.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEee-eecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ....|.+.|..+.|-|-..+|++++. .++++||++..++...+. +.|.+.+..+++.+....+. +.|+     .||.
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF-~tGg-----RDg~  168 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVF-CTGG-----RDGE  168 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcce-eecc-----CCCc
Confidence            34568889999999995456776654 679999999887765432 22678888888876544443 3444     5799


Q ss_pred             EEEEeCCCCc--EEE--------EEe----------------------eCCceeEEEEeCC-eEEEEE--CCEEEEEEcC
Q 020784          158 VMIWDDHQSR--CIG--------ELS----------------------FRSEVRSVKLRRD-RIIVVL--EQKIFVYNFA  202 (321)
Q Consensus       158 v~iWD~~~~~--~~~--------~~~----------------------~~~~v~~v~~~~~-~~~~~~--~~~I~iwd~~  202 (321)
                      |.|||++-..  ...        ..+                      ..+.|+.+.|..+ .++.++  |+.|++||++
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence            9999975332  000        000                      1123445555433 344443  5799999998


Q ss_pred             CcEEEEEE--------ecc-CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc---eEEeeccccc---eeEEEEC
Q 020784          203 DLKLLHQI--------ETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSR---IACFALT  267 (321)
Q Consensus       203 ~~~~~~~l--------~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~---~~~l~~H~~~---V~~vafs  267 (321)
                      +.......        ..+ ...++...+..|..|.+|.+++. |+.|+.|++....   ...+.+|...   |.+ ..+
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lS  326 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELS  326 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeee-ecC
Confidence            75443322        111 11345677777776777765555 8999999986532   3345555332   222 368


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE
Q 020784          268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS  306 (321)
Q Consensus       268 pdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~  306 (321)
                      ||+.+|++|+.|.. ..||.+.+-+.--.+..||...+.
T Consensus       327 pd~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~Ght~eVt  364 (720)
T KOG0321|consen  327 PDDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLGHTREVT  364 (720)
T ss_pred             CCCceEeccCCCcc-eeeeeecCccCChhhhhCcceEEE
Confidence            99999999999999 999999986644334455554443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.42  E-value=1.6e-10  Score=105.71  Aligned_cols=209  Identities=10%  Similarity=0.054  Sum_probs=130.3

Q ss_pred             EEEEcCCcEEEEEecCC-ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC-CCcE--EEEEeeC
Q 020784          100 FAAGTDHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRC--IGELSFR  175 (321)
Q Consensus       100 lasg~~~gv~vw~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~-~~~~--~~~~~~~  175 (321)
                      ++.+.+++|.+|++.+. +......+.+.+....+.++++++.+++++.      .++.|.+|+++ ++..  +......
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~   79 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLP   79 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCC
Confidence            33344577999999643 3222232323455667788888988877653      35889999987 3432  2333344


Q ss_pred             CceeEEEEeCC--eEEEEE--CCEEEEEEcCC-c---EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeC
Q 020784          176 SEVRSVKLRRD--RIIVVL--EQKIFVYNFAD-L---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (321)
Q Consensus       176 ~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~-~---~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~  247 (321)
                      ..+..+.++++  .++++.  ++.|.+|++.+ +   +.+..+.....+ ..++++  +++.++.++...++.|.+||+.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGC-HSANID--PDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcc-cEeEeC--CCCCEEEEeeCCCCEEEEEEEC
Confidence            46777888865  466654  57999999963 3   223333222222 234454  4556665557788999999986


Q ss_pred             C-cceEE-----ee-ccccceeEEEECCCCCEEEEEeC-CCcEEEEEEcC--CCc--EEEEEeCC-------CcceeEEE
Q 020784          248 S-KRTKF-----IM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGT--LLQEECCP-------SISAQSGL  308 (321)
Q Consensus       248 ~-~~~~~-----l~-~H~~~V~~vafspdg~~las~S~-Dgt~IrIWd~~--tg~--~i~~~~~g-------~~~~~~~~  308 (321)
                      . +.+..     .. .....++.++|+|+|++|.++.+ +++ |.+|++.  +++  .+.++...       .....+.+
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            5 22211     11 12345788999999999988877 777 9999997  343  34544321       01223678


Q ss_pred             eecCceEEEe
Q 020784          309 WLSSAWLRVL  318 (321)
Q Consensus       309 s~d~~~la~~  318 (321)
                      ++|+++|.++
T Consensus       236 ~pdg~~lyv~  245 (330)
T PRK11028        236 TPDGRHLYAC  245 (330)
T ss_pred             CCCCCEEEEe
Confidence            8999999886

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=6.4e-12  Score=109.70  Aligned_cols=190  Identities=14%  Similarity=0.127  Sum_probs=131.3

Q ss_pred             CEEEEEc-CCcEEEEEecCCceeEEeeeecCCceEEEEEec--CCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee
Q 020784           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (321)
Q Consensus        98 ~~lasg~-~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (321)
                      ..+|+|- .+.|++||..+++.+..... +...+..+.+..  .+..+.+++       .||+||+||++.......+..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~s-------sDG~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCS-------SDGTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEec-------cCCeEEEEEeecchhhhheec
Confidence            4456554 46699999999766544443 345555666654  455566665       689999999998776555544


Q ss_pred             CC----ceeEEEEe-CCeEEEE-EC-----CEEEEEEcCCcEE-EEEE-eccCCCCceEEEeeCCCceEEEeecCCCCcE
Q 020784          175 RS----EVRSVKLR-RDRIIVV-LE-----QKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (321)
Q Consensus       175 ~~----~v~~v~~~-~~~~~~~-~~-----~~I~iwd~~~~~~-~~~l-~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V  241 (321)
                      ..    +..+++.+ ++.++.+ +.     -.|.+||++..+. +..+ +.|...+..+.|+|... .+|+ +|+.||-|
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-nlLl-SGSvDGLv  190 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-NLLL-SGSVDGLV  190 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-CeEE-eecccceE
Confidence            32    34556654 3344443 32     3899999987655 5554 56778888888887643 4555 79999999


Q ss_pred             EEEeeCCc----ceEEeeccccceeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          242 RVEHYASK----RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       242 ~i~d~~~~----~~~~l~~H~~~V~~vafspdg-~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      .++|.+..    .+...-.|.+.|.++.|..++ +.+.+-+...+ ..+|+++.|.+...+.
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLE  251 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhccc
Confidence            99998643    233344578889999999776 45777888999 9999999988655443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=5.4e-12  Score=112.81  Aligned_cols=179  Identities=18%  Similarity=0.206  Sum_probs=131.2

Q ss_pred             EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC-CCcEEEEEeeCCceeEEEEeCCeEEE--EECCEEEEEEcCCcEEE
Q 020784          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELSFRSEVRSVKLRRDRIIV--VLEQKIFVYNFADLKLL  207 (321)
Q Consensus       131 ~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~-~~~~~~~~~~~~~v~~v~~~~~~~~~--~~~~~I~iwd~~~~~~~  207 (321)
                      .++++.+++..+++.+       .||++|||+.- ......+..++.+|.++.|+++...+  .+.+..+||+.+++..+
T Consensus       148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeecc-------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence            6778888888888877       78999999954 44455566788899999999986333  34569999999999777


Q ss_pred             EEEeccCC--CCceEEEeeCCC--ceEEEeecCCCCcEEEEeeCC--c----ceEEeeccccceeEEEECCCCCEEEEEe
Q 020784          208 HQIETIAN--PKGLCAVSQGVG--SLVLVCPGLQKGQVRVEHYAS--K----RTKFIMAHDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       208 ~~l~~~~~--~~~~~~~s~~~d--~~~la~sGs~dg~V~i~d~~~--~----~~~~l~~H~~~V~~vafspdg~~las~S  277 (321)
                      ........  ....|.|+.+++  ..+++++-...|.|+.++...  +    +......-...|++++.|.||+++|-|+
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            66653222  234677776653  345554455556676655432  1    1112222345699999999999999999


Q ss_pred             CCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCceEEE
Q 020784          278 TKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAWLRV  317 (321)
Q Consensus       278 ~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~  317 (321)
                      .||. |-|++..+.++++-.++.|...+  +.|++|.++++-
T Consensus       301 ~dGs-Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  301 MDGS-VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             cCCc-EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            9999 99999999999998888888655  488899988764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.40  E-value=8.9e-12  Score=117.42  Aligned_cols=200  Identities=15%  Similarity=0.106  Sum_probs=138.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      +.++|...|+|++.+|+|+++|++..      -.|+||+..+=.......+ |.=.|..+++++++.+++.++       
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~LLsvs-------  591 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYLLSVS-------  591 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcEEEEee-------
Confidence            34789999999999999999998864      1377999877665555555 566788899999999999998       


Q ss_pred             CCCcEEEEeCCCCcE-EEE---Ee-eCCceeEEEEeCCeE--EEEE-CCEEEEEEcCCc--EEEEEEec--cCCCCceEE
Q 020784          154 PLNKVMIWDDHQSRC-IGE---LS-FRSEVRSVKLRRDRI--IVVL-EQKIFVYNFADL--KLLHQIET--IANPKGLCA  221 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~-~~~---~~-~~~~v~~v~~~~~~~--~~~~-~~~I~iwd~~~~--~~~~~l~~--~~~~~~~~~  221 (321)
                      .|+++.+|...+... -..   .+ +...|.+..|+++..  +.++ |++|++|...+.  +.+..+..  +...+..++
T Consensus       592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~  671 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA  671 (764)
T ss_pred             cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence            889999998754321 111   22 223578888988754  3333 579999999776  54444322  222333333


Q ss_pred             EeeC--CCce-EEEeecCCCCcEEEEeeC------Cc-------ceEEeeccccceeEEEECCC----------CCEEEE
Q 020784          222 VSQG--VGSL-VLVCPGLQKGQVRVEHYA------SK-------RTKFIMAHDSRIACFALTQD----------GQLLAT  275 (321)
Q Consensus       222 ~s~~--~d~~-~la~sGs~dg~V~i~d~~------~~-------~~~~l~~H~~~V~~vafspd----------g~~las  275 (321)
                      +.+-  .+.. +++ .|-..|.|.+|...      +.       .+....+|.+.|+.++|.|-          ...||+
T Consensus       672 ~~~~~~~e~~~~va-vGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~  750 (764)
T KOG1063|consen  672 YLPVDHNEKGDVVA-VGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAV  750 (764)
T ss_pred             eeccccccccceEE-EEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEee
Confidence            3321  1222 455 59999999998754      11       11123468889999999965          245799


Q ss_pred             EeCCCcEEEEEEcC
Q 020784          276 SSTKGTLVRIFNTL  289 (321)
Q Consensus       276 ~S~Dgt~IrIWd~~  289 (321)
                      |++|.+ +||+++.
T Consensus       751 ~g~D~~-vri~nv~  763 (764)
T KOG1063|consen  751 GGDDES-VRIFNVD  763 (764)
T ss_pred             ecccce-eEEeecc
Confidence            999999 9999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.40  E-value=4.7e-11  Score=106.43  Aligned_cols=144  Identities=13%  Similarity=0.183  Sum_probs=100.5

Q ss_pred             CCeEEEEEcCCCC-EEEEEcC-CcEEEEEecCC-------ceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           86 PTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPF-------REIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        86 ~~V~~v~fs~dg~-~lasg~~-~gv~vw~~~~~-------~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      .+|.++.|.+++. .||+|+. ..||||-+...       +..+.-.+. |...+++|.+.++++++|.++       ++
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D~   86 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------DG   86 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------CC
Confidence            5899999999877 8998776 56999987432       222222221 788999999999999998877       56


Q ss_pred             CcEEEEeCC--------C-----Cc-E--EEEEe-eCCceeEEEEeCCeEEEE---ECCEEEEEEcCCcEEEEEEeccCC
Q 020784          156 NKVMIWDDH--------Q-----SR-C--IGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN  215 (321)
Q Consensus       156 ~~v~iWD~~--------~-----~~-~--~~~~~-~~~~v~~v~~~~~~~~~~---~~~~I~iwd~~~~~~~~~l~~~~~  215 (321)
                      ++|.+|-..        +     .+ .  ...+. +...|+.++|.++..++.   .++.+++||+..|+++..+..|.+
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence            999999755        2     11 1  12222 335799999998765544   357999999999999999988877


Q ss_pred             CCceEEEeeCCCceEEEeecCCCC
Q 020784          216 PKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      .+...++  ++-+++++. =+.|.
T Consensus       167 yvqgvaw--Dpl~qyv~s-~s~dr  187 (434)
T KOG1009|consen  167 YVQGVAW--DPLNQYVAS-KSSDR  187 (434)
T ss_pred             ccceeec--chhhhhhhh-hccCc
Confidence            6554443  444456552 34443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=6.1e-11  Score=116.48  Aligned_cols=193  Identities=16%  Similarity=0.219  Sum_probs=130.5

Q ss_pred             eEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee--cCCceEEEEEec--CCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~--~~~~v~~v~~~~--~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      -..+.|+|=...++++.+ ..|+|||.+.++........  -...|..++...  +..++.+++       .||.||||+
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas-------~dGvIRIwk 1139 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS-------SDGVIRIWK 1139 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec-------cCceEEEec
Confidence            456778888888998886 66889999888765443321  123566666654  334555555       689999997


Q ss_pred             C-----CCCcEEEEEee-C-------CceeEEEEeC--CeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC
Q 020784          163 D-----HQSRCIGELSF-R-------SEVRSVKLRR--DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       163 ~-----~~~~~~~~~~~-~-------~~v~~v~~~~--~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      -     ++.+.+..... .       +.-.-++|..  ..+++.++ ..|||||....+.++.+..... ..+.+++.+.
T Consensus      1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred             ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeecccc
Confidence            3     22333333211 0       1112234543  34555554 5999999998888887765422 3344555543


Q ss_pred             C-ceEEEeecCCCCcEEEEeeCCc----ceEEeeccccc--eeEEEECCCCC-EEEEEeCCCcEEEEEEcCC
Q 020784          227 G-SLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSR--IACFALTQDGQ-LLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       227 d-~~~la~sGs~dg~V~i~d~~~~----~~~~l~~H~~~--V~~vafspdg~-~las~S~Dgt~IrIWd~~t  290 (321)
                      . +.++|+ |..||.|+++|....    .+.+.+.|+..  |..+.+.+.|- .|++||.||. |++||++.
T Consensus      1219 ~~gn~i~A-GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~ 1288 (1387)
T KOG1517|consen 1219 VHGNIIAA-GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRM 1288 (1387)
T ss_pred             cCCceEEE-eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEeccc
Confidence            3 366764 999999999997643    34588999988  99999998775 4999999999 99999997

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.39  E-value=1.1e-10  Score=101.32  Aligned_cols=168  Identities=18%  Similarity=0.248  Sum_probs=121.1

Q ss_pred             cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC-CCcEEEEEeeCCceeEEE---
Q 020784          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELSFRSEVRSVK---  182 (321)
Q Consensus       107 gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~-~~~~~~~~~~~~~v~~v~---  182 (321)
                      .|.|||-...+.+...++  ..+|..|.+.  .+.++++-        .++|.||... +-+.+..++....+..+|   
T Consensus        76 kviIWDD~k~~~i~el~f--~~~I~~V~l~--r~riVvvl--------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIELSF--NSEIKAVKLR--RDRIVVVL--------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             eEEEEecccCcEEEEEEe--ccceeeEEEc--CCeEEEEe--------cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            478999666667777777  6788887764  44555554        5899999987 555666665544444443   


Q ss_pred             EeCCe-EEEEE---CCEEEEEEcCCcEE--EEEEeccCCCCceEEEeeCCCceEEEeecCCCCc-EEEEeeCCcc-eEEe
Q 020784          183 LRRDR-IIVVL---EQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ-VRVEHYASKR-TKFI  254 (321)
Q Consensus       183 ~~~~~-~~~~~---~~~I~iwd~~~~~~--~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~-V~i~d~~~~~-~~~l  254 (321)
                      -+... +++.-   -|+|.|-|+...+.  -..+..|...+.+++++..  |.++| +++..|+ |||||..++. +..+
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~--Gt~vA-TaStkGTLIRIFdt~~g~~l~E~  220 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ--GTLVA-TASTKGTLIRIFDTEDGTLLQEL  220 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC--ccEEE-EeccCcEEEEEEEcCCCcEeeee
Confidence            22233 33332   27999999966544  3677888888777777664  48888 5888886 7889988776 5566


Q ss_pred             ec--cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          255 MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       255 ~~--H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +.  -...|.||+||||+.+||.+|+.|| |+||.++.
T Consensus       221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~  257 (346)
T KOG2111|consen  221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRD  257 (346)
T ss_pred             ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeec
Confidence            53  3456999999999999999999999 99999876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=1.1e-10  Score=98.44  Aligned_cols=158  Identities=19%  Similarity=0.270  Sum_probs=98.1

Q ss_pred             EEEEcCCCCEEEEEcC----C-------cEEEEEecCCc-eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           90 HISFNQDHGCFAAGTD----H-------GFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~----~-------gv~vw~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .+.|+++|++|+.-..    +       ...||.++... ......+...+.|..++|+|+++.++++.|.     .++.
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----~~~~   84 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----MPAK   84 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----CCcc
Confidence            5779999998774332    1       13355553221 1222222124568888888888888777653     3567


Q ss_pred             EEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec--
Q 020784          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--  235 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG--  235 (321)
                      |.+||++ +                                      +.+.++..  .....+.++|  +|.++++.|  
T Consensus        85 v~lyd~~-~--------------------------------------~~i~~~~~--~~~n~i~wsP--~G~~l~~~g~~  121 (194)
T PF08662_consen   85 VTLYDVK-G--------------------------------------KKIFSFGT--QPRNTISWSP--DGRFLVLAGFG  121 (194)
T ss_pred             cEEEcCc-c--------------------------------------cEeEeecC--CCceEEEECC--CCCEEEEEEcc
Confidence            7777764 2                                      22222221  2223344454  557777644  


Q ss_pred             CCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeC------CCcEEEEEEcCCCcEEEEEe
Q 020784          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       236 s~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~------Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      ...|.|.+||...........|. .++.++|+|||++|||+..      |+. ++||++ +|+++.+..
T Consensus       122 n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  122 NLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSF-QGRLLYKKP  187 (194)
T ss_pred             CCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceecccc-EEEEEe-cCeEeEecc
Confidence            34678999999865543333343 4789999999999999864      788 999998 488877654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.38  E-value=2.2e-11  Score=113.81  Aligned_cols=160  Identities=14%  Similarity=0.119  Sum_probs=119.8

Q ss_pred             CCcEEEEeCCCCcE-----EEEEeeCCceeEEEEeC---CeEEEEEC-CEEEEEEcCCc-------EEEEEEeccCCCCc
Q 020784          155 LNKVMIWDDHQSRC-----IGELSFRSEVRSVKLRR---DRIIVVLE-QKIFVYNFADL-------KLLHQIETIANPKG  218 (321)
Q Consensus       155 d~~v~iWD~~~~~~-----~~~~~~~~~v~~v~~~~---~~~~~~~~-~~I~iwd~~~~-------~~~~~l~~~~~~~~  218 (321)
                      .|.|-|++++....     +..+.-...|+.+.|++   .+++++++ +.|++|.+..+       ..-..+..|...+.
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            48899999876432     33344455789999876   47888876 59999998543       23344555555555


Q ss_pred             eEEEeeCCCceEEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE-EEE
Q 020784          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQE  296 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~-i~~  296 (321)
                      .+.|++-.. .+|+ +.++|-+|++||+.+... ..|.+|.+.|..+||||+|+.+||.+.||+ |||++-++++. +++
T Consensus       682 slRfHPLAa-dvLa-~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~E  758 (1012)
T KOG1445|consen  682 SLRFHPLAA-DVLA-VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYE  758 (1012)
T ss_pred             EEEecchhh-hHhh-hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCcccc
Confidence            555555322 3455 489999999999998764 589999999999999999999999999999 99999988753 443


Q ss_pred             Ee--CCCcceeEEEeecCceEEE
Q 020784          297 EC--CPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       297 ~~--~g~~~~~~~~s~d~~~la~  317 (321)
                      -+  .|...+++.+..||+++.+
T Consensus       759 g~gpvgtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  759 GKGPVGTRGARILWACDGRIVIV  781 (1012)
T ss_pred             CCCCccCcceeEEEEecCcEEEE
Confidence            22  4566788889999999865

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.38  E-value=1.6e-11  Score=109.13  Aligned_cols=147  Identities=16%  Similarity=0.213  Sum_probs=104.2

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLK  205 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~  205 (321)
                      |.+.+..++|++..+.+ +++|+     .|-+|+||++-.+.....+.                               +
T Consensus        80 Ht~~vLDi~w~PfnD~v-IASgS-----eD~~v~vW~IPe~~l~~~lt-------------------------------e  122 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCV-IASGS-----EDTKVMVWQIPENGLTRDLT-------------------------------E  122 (472)
T ss_pred             ccccccccccCccCCce-eecCC-----CCceEEEEECCCcccccCcc-------------------------------c
Confidence            66777777777644333 23333     56889999876554332221                               2


Q ss_pred             EEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       206 ~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                      .+..+.+|..-++.+.+++.-.+ +|+ |.+.|.+|.||+..++. +.++. |...|.++.|+.||.+|+|.+.|+. ||
T Consensus       123 pvv~L~gH~rrVg~V~wHPtA~N-VLl-sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vR  198 (472)
T KOG0303|consen  123 PVVELYGHQRRVGLVQWHPTAPN-VLL-SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VR  198 (472)
T ss_pred             ceEEEeecceeEEEEeecccchh-hHh-hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eE
Confidence            34456666666777777776544 444 46778899999999887 45666 9999999999999999999999999 99


Q ss_pred             EEEcCCCcEEEEE--eCCCcceeEEEeecCc
Q 020784          285 IFNTLDGTLLQEE--CCPSISAQSGLWLSSA  313 (321)
Q Consensus       285 IWd~~tg~~i~~~--~~g~~~~~~~~s~d~~  313 (321)
                      |||-++|+++.+-  ..|+...+..|--+|.
T Consensus       199 v~dpr~~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  199 VIDPRRGTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             EEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence            9999999999876  2334444445555555

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.38  E-value=3.5e-11  Score=115.15  Aligned_cols=227  Identities=13%  Similarity=0.059  Sum_probs=144.7

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecCCce--eE---EeeeecCCceEEEEEecCC--CeEEEEeCCCCCC
Q 020784           82 SSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE--IF---RRDFERGGGIGVVEMLFRC--NILALVGGGPDPQ  152 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~~~~--~~---~~~~~~~~~v~~v~~~~~~--~~~~~~sg~~~~~  152 (321)
                      ...+..|+|+.|+|. ..+||+|..+| |.+||+.....  ..   .....|...+..+.|..+.  .-++.++      
T Consensus       239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s------  312 (555)
T KOG1587|consen  239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS------  312 (555)
T ss_pred             EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe------
Confidence            344568999999995 56677777766 88999876554  11   1222255666666665433  2355655      


Q ss_pred             CCCCcEEEEeCCCCcE-EEE-----Ee-------eCCceeEEEEe---CCeEEEEEC-CEEEEEE---cCCcE-----EE
Q 020784          153 YPLNKVMIWDDHQSRC-IGE-----LS-------FRSEVRSVKLR---RDRIIVVLE-QKIFVYN---FADLK-----LL  207 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~-~~~-----~~-------~~~~v~~v~~~---~~~~~~~~~-~~I~iwd---~~~~~-----~~  207 (321)
                       .||.|..|+++.-.. ...     ..       ....++++.|.   +..++++++ |.|.-=+   .+...     .+
T Consensus       313 -sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  313 -SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             -cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence             689999999765432 111     11       11246777775   467888876 5555422   22221     12


Q ss_pred             EEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeC--CcceEEeeccccceeEEEECCCC-CEEEEEeCCCcEEE
Q 020784          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVR  284 (321)
Q Consensus       208 ~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~l~~H~~~V~~vafspdg-~~las~S~Dgt~Ir  284 (321)
                      ..+..|..++.++..++-....++.  ++ |-+|+||.-.  ..++..+..+...|++++|||-. ..||++..||. |.
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls--~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~  467 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLS--VG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LD  467 (555)
T ss_pred             ccccccCcceEeeecCCCccceeee--ec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-ee
Confidence            2444556666666666654434443  33 8899999754  45677888899999999999974 57899999999 99


Q ss_pred             EEEcCCCc--EEEEEeCCCcce-eEEEeecCceEEEee
Q 020784          285 IFNTLDGT--LLQEECCPSISA-QSGLWLSSAWLRVLR  319 (321)
Q Consensus       285 IWd~~tg~--~i~~~~~g~~~~-~~~~s~d~~~la~~~  319 (321)
                      |||+..-.  .+.+........ .+..+..|+.||+.-
T Consensus       468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd  505 (555)
T KOG1587|consen  468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD  505 (555)
T ss_pred             hhhhhccccCCcccccccccccceeecCCCCcEEEEec
Confidence            99997543  344443332222 335567788888753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=3.2e-11  Score=104.42  Aligned_cols=202  Identities=12%  Similarity=0.214  Sum_probs=132.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCC------------eEEEEeCC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN------------ILALVGGG  148 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~------------~~~~~sg~  148 (321)
                      ..|-.+|.|++||+||++|++++.|. +.+||+-.+.......|  ..+|..+.+++...            .+...+..
T Consensus        62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf--~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~  139 (405)
T KOG1273|consen   62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF--DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP  139 (405)
T ss_pred             hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc--cCccceeeeccccCCeEEEEEecCCcEEEEecCC
Confidence            45777999999999999999999865 77999988776666655  44444444433221            11111100


Q ss_pred             --------CC--------------------CCCCCCcEEEEeCCCCcEEEEEeeCC--ceeEEEEeC--CeEEEE-ECCE
Q 020784          149 --------PD--------------------PQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRR--DRIIVV-LEQK  195 (321)
Q Consensus       149 --------~~--------------------~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~--~~~~~~-~~~~  195 (321)
                              ++                    +....|.+-++|..+.+++..++...  .|.++.+..  +.+++- +|..
T Consensus       140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv  219 (405)
T KOG1273|consen  140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV  219 (405)
T ss_pred             ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce
Confidence                    00                    01134778999999999888776654  677777764  445554 4569


Q ss_pred             EEEEEcCCc---------EEEEEEeccCC--CCceEEEeeCCCceEEEeecCC-CCcEEEEeeCCcc-eEEeeccc-cce
Q 020784          196 IFVYNFADL---------KLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYASKR-TKFIMAHD-SRI  261 (321)
Q Consensus       196 I~iwd~~~~---------~~~~~l~~~~~--~~~~~~~s~~~d~~~la~sGs~-dg~V~i~d~~~~~-~~~l~~H~-~~V  261 (321)
                      ||.|+++..         +..++++.--+  .-..|+|+.  ++.++++ |+. -..++||....+. ++.|.|-+ ...
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~--dgeYv~a-~s~~aHaLYIWE~~~GsLVKILhG~kgE~l  296 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG--DGEYVCA-GSARAHALYIWEKSIGSLVKILHGTKGEEL  296 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC--CccEEEe-ccccceeEEEEecCCcceeeeecCCchhhe
Confidence            999998631         11122222111  112566655  6688875 554 3468889988877 56788877 567


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          262 ACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       262 ~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      ..|.|+|-...+++- ..|. |+||....
T Consensus       297 ~DV~whp~rp~i~si-~sg~-v~iw~~~~  323 (405)
T KOG1273|consen  297 LDVNWHPVRPIIASI-ASGV-VYIWAVVQ  323 (405)
T ss_pred             eecccccceeeeeec-cCCc-eEEEEeec
Confidence            889999999999988 5777 99998664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.37  E-value=5.1e-11  Score=112.05  Aligned_cols=202  Identities=13%  Similarity=0.112  Sum_probs=130.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC-----
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY-----  153 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~-----  153 (321)
                      ...+|...|+||+|+.||++||+|+.|. |.||+-+--+. ..+.  |+..|.++.+.+-...+++++-++...+     
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkYS--H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK  124 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKYS--HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK  124 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eeec--cCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence            3467899999999999999999998755 77997543322 2222  4666666665554444443332221111     


Q ss_pred             ---------------------------CCCcEEEEeCCCCcEEEEEee----CCceeEEEEeCC-------eEEEE-ECC
Q 020784          154 ---------------------------PLNKVMIWDDHQSRCIGELSF----RSEVRSVKLRRD-------RIIVV-LEQ  194 (321)
Q Consensus       154 ---------------------------~d~~v~iWD~~~~~~~~~~~~----~~~v~~v~~~~~-------~~~~~-~~~  194 (321)
                                                 .+|+|.|=+- +++....++-    .++|.+++|++.       .+.++ .++
T Consensus       125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q  203 (1081)
T KOG1538|consen  125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ  203 (1081)
T ss_pred             hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence                                       2345544432 2222222332    347999999864       23343 346


Q ss_pred             EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEE
Q 020784          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA  274 (321)
Q Consensus       195 ~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~la  274 (321)
                      ++.+|.+....+-+.-..   ...-++++.-++|.++.+ |+.||.+.++....-.+-++-..+..|++|+..|++++++
T Consensus       204 TLSFy~LsG~~Igk~r~L---~FdP~CisYf~NGEy~Li-GGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  204 TLSFYQLSGKQIGKDRAL---NFDPCCISYFTNGEYILL-GGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             eeEEEEecceeecccccC---CCCchhheeccCCcEEEE-ccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEE
Confidence            888887764322111111   122345566666677775 8889999998766555667777889999999999999999


Q ss_pred             EEeCCCcEEEEEEcCC
Q 020784          275 TSSTKGTLVRIFNTLD  290 (321)
Q Consensus       275 s~S~Dgt~IrIWd~~t  290 (321)
                      .|+.||| |--|++-.
T Consensus       280 ~GCqDGT-iACyNl~f  294 (1081)
T KOG1538|consen  280 VGCQDGT-IACYNLIF  294 (1081)
T ss_pred             EEEccCe-eehhhhHH
Confidence            9999999 98888754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.9e-11  Score=106.80  Aligned_cols=157  Identities=14%  Similarity=0.208  Sum_probs=110.5

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEe----CCeEEEE-ECCEEEEEEcCCcEEEEEEeccCCC-CceEEEeeCC
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRS-EVRSVKLR----RDRIIVV-LEQKIFVYNFADLKLLHQIETIANP-KGLCAVSQGV  226 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~----~~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~-~~~~~~s~~~  226 (321)
                      +.+.|++||..+++.+.+|+... .+..+.|.    ++.+.+| ++++||+||++.......+....++ ....++..+-
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc  127 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC  127 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence            46899999999999999998764 45556654    4556666 5689999999887666666554443 2334444443


Q ss_pred             CceEEEeecCC----CCcEEEEeeCCcce--E-EeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCC----cEE
Q 020784          227 GSLVLVCPGLQ----KGQVRVEHYASKRT--K-FIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDG----TLL  294 (321)
Q Consensus       227 d~~~la~sGs~----dg~V~i~d~~~~~~--~-~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg----~~i  294 (321)
                      .+.++++ |..    +-.|.+||.+..+.  . -...|...|++|+|+|+ -.+|+|||.||- |.|||+..-    .++
T Consensus       128 k~~ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~EeDaL~  205 (376)
T KOG1188|consen  128 KKNIIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEEDALL  205 (376)
T ss_pred             cCCeEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcchhhHH
Confidence            5578875 653    55677799876542  2 35679999999999986 579999999999 999999753    245


Q ss_pred             EEEeCCCcceeEEEeecC
Q 020784          295 QEECCPSISAQSGLWLSS  312 (321)
Q Consensus       295 ~~~~~g~~~~~~~~s~d~  312 (321)
                      ++++.+.....+.+...+
T Consensus       206 ~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  206 HVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             HhhcccceeeeeeeecCC
Confidence            556555554444544444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=4.5e-11  Score=106.19  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=74.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCC------ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~------~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      .+.|.+-|+.+.|+.+|++||+|+++- ++||+++..      +.+......|...|-++++.- ++..+ .+|+     
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~-~SG~-----  124 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFL-YSGE-----  124 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeE-ecCC-----
Confidence            367888999999999999999999854 889998532      333233322345566666543 33333 3344     


Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCC---ceeEEEEeC--CeEEEEE-CCEEEEEEcC
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRS---EVRSVKLRR--DRIIVVL-EQKIFVYNFA  202 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~---~v~~v~~~~--~~~~~~~-~~~I~iwd~~  202 (321)
                      .+++|.+-|+++.+.+..+.+..   .|+.+..++  +.+++.+ ++.|.+||.+
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            46899999998888776655543   576666665  2344443 3466666664

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.35  E-value=1.4e-10  Score=115.43  Aligned_cols=216  Identities=11%  Similarity=0.073  Sum_probs=145.4

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecCCc-------eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           82 SSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      +.|...|..++.+++ +.+|++|++|| |+|||+....       ...++.. .+..+..+.+++.++.+|+++      
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t------ 1117 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST------ 1117 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc------
Confidence            556677778887765 59999999977 7799985322       2222221 367888999999999999986      


Q ss_pred             CCCCcEEEEeCCC--CcEE-----EEE--eeCCceeEEE-Ee---CC-eEEEEEC-CEEEEEEcCCcEEEEEEeccCCCC
Q 020784          153 YPLNKVMIWDDHQ--SRCI-----GEL--SFRSEVRSVK-LR---RD-RIIVVLE-QKIFVYNFADLKLLHQIETIANPK  217 (321)
Q Consensus       153 ~~d~~v~iWD~~~--~~~~-----~~~--~~~~~v~~v~-~~---~~-~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~  217 (321)
                       .||.|++.+++.  ....     ...  +..+.+..+. +.   .. .++.+++ +.|..||++......+++....-.
T Consensus      1118 -~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1118 -KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             -CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence             789999998765  2211     111  1222333322 11   12 3444555 699999999877767666544444


Q ss_pred             ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-E-eeccccceeEEEECCCC---CEEEEEeC-CCcEEEEEEcCCC
Q 020784          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-F-IMAHDSRIACFALTQDG---QLLATSST-KGTLVRIFNTLDG  291 (321)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~-l~~H~~~V~~vafspdg---~~las~S~-Dgt~IrIWd~~tg  291 (321)
                      .+.++..++.++++++ |+..|.+.+||++.+... . -.+|..+++.|+.+|-.   ...++++. ..+-|-+|++.+|
T Consensus      1197 ~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            5666666777789885 999999999999987643 2 23456788888877643   34555444 3344999999999


Q ss_pred             cEEEEEeCCCcceeE
Q 020784          292 TLLQEECCPSISAQS  306 (321)
Q Consensus       292 ~~i~~~~~g~~~~~~  306 (321)
                      .+-..+..++....+
T Consensus      1276 ~~~~vl~~s~~~p~l 1290 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPIL 1290 (1431)
T ss_pred             cceEEEEcCCCCcch
Confidence            988888766454444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.6e-10  Score=107.15  Aligned_cols=210  Identities=15%  Similarity=0.180  Sum_probs=141.5

Q ss_pred             CCCCeEEEEEcCCCCEEE-EEcCC-cEEEEEecCCceeEEeeeecCCceEEEEE-ecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           84 PPPTLLHISFNQDHGCFA-AGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~la-sg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ++..-+.|..+|||+|+. +|.-+ .|++||+......+.+.+  +..+..+.. +-+-...++.-       +|++|-+
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~-------~DR~Ief  120 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQ-------NDRTIEF  120 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEee-------cCceeee
Confidence            444667899999999876 45444 499999999988888886  443333333 33333333333       3455544


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEe---CCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLR---RDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~---~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      -..  +..+..+..+..-..++.+   .+.++++++..|+-+|+.+|..+.-|......+.+|.++.  -+.+||+ |+.
T Consensus       121 Hak--~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~--~hgLla~-Gt~  195 (703)
T KOG2321|consen  121 HAK--YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE--EHGLLAC-GTE  195 (703)
T ss_pred             hhh--cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC--ccceEEe-ccc
Confidence            321  2222233333333344443   4566667778999999999999999988777777777765  4478885 999


Q ss_pred             CCcEEEEeeCCcceE-Ee------eccccc-----eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee
Q 020784          238 KGQVRVEHYASKRTK-FI------MAHDSR-----IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ  305 (321)
Q Consensus       238 dg~V~i~d~~~~~~~-~l------~~H~~~-----V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~  305 (321)
                      +|.|..||...+... ++      ..|.+.     |+++.|+.||-.+|.|..+|. |.|+|+++.+.+..-+.+..-.+
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecccCCccce
Confidence            999999998876532 33      234333     999999999999999999999 99999999887654444444334


Q ss_pred             EEE
Q 020784          306 SGL  308 (321)
Q Consensus       306 ~~~  308 (321)
                      ..+
T Consensus       275 ~~l  277 (703)
T KOG2321|consen  275 KKL  277 (703)
T ss_pred             eee
Confidence            433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.34  E-value=5e-10  Score=98.94  Aligned_cols=178  Identities=17%  Similarity=0.208  Sum_probs=129.9

Q ss_pred             CEEEEEc-CCc--EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee
Q 020784           98 GCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (321)
Q Consensus        98 ~~lasg~-~~g--v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (321)
                      .++|..+ +++  .+++++.....+....|  ...|-.|.+. ..+++++.-         ..|.|+|+++.+.+.++..
T Consensus        57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--pt~IL~VrmN-r~RLvV~Le---------e~IyIydI~~MklLhTI~t  124 (391)
T KOG2110|consen   57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFF--PTSILAVRMN-RKRLVVCLE---------ESIYIYDIKDMKLLHTIET  124 (391)
T ss_pred             ceeEEEecCCCceEEEEEcccCceEEEEec--CCceEEEEEc-cceEEEEEc---------ccEEEEecccceeehhhhc
Confidence            4454333 344  67888887777666666  5666666653 334444444         4599999999998888765


Q ss_pred             C-C---ceeEEEEeCCeEEEE-----ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc-EEEE
Q 020784          175 R-S---EVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ-VRVE  244 (321)
Q Consensus       175 ~-~---~v~~v~~~~~~~~~~-----~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~-V~i~  244 (321)
                      . .   .+.++.++...-.++     +.+.|.+||..+.+.+..+..|..++.+++|+++  |.+|| +++..|+ |||+
T Consensus       125 ~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~--G~llA-TASeKGTVIRVf  201 (391)
T KOG2110|consen  125 TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD--GTLLA-TASEKGTVIRVF  201 (391)
T ss_pred             cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC--CCEEE-EeccCceEEEEE
Confidence            4 2   355566665533333     2379999999999999999999888777777765  59999 5888885 6788


Q ss_pred             eeCCcc-eEEeeccc--cceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          245 HYASKR-TKFIMAHD--SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       245 d~~~~~-~~~l~~H~--~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      ....++ +..|+.-.  ..|.+++|+|++++|+..|.-+| |+||.+..-
T Consensus       202 ~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~  250 (391)
T KOG2110|consen  202 SVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKV  250 (391)
T ss_pred             EcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEeccc
Confidence            887765 56776433  35889999999999999999999 999998753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.32  E-value=4.8e-10  Score=97.39  Aligned_cols=198  Identities=14%  Similarity=0.129  Sum_probs=139.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCc-eeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           86 PTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFR-EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~-~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .+|+|-+|++|++.+|.+-.. -+.||...... .+...++. |+..+..++|.+..+.+.+++       .|+.-.||.
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs-------~drnayVw~   83 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS-------HDRNAYVWT   83 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc-------CCCCccccc
Confidence            589999999999999999884 58899886554 22222221 788999999999999999988       788899999


Q ss_pred             C-CCCcEEE---EEeeCCceeEEEEeCC--eEEEEEC-CEEEEEEcCCcEEEEEEeccCCC--CceEEEeeCCCceEEEe
Q 020784          163 D-HQSRCIG---ELSFRSEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLHQIETIANP--KGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       163 ~-~~~~~~~---~~~~~~~v~~v~~~~~--~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~--~~~~~~s~~~d~~~la~  233 (321)
                      . ..+....   .+.+....++|.|.++  .+++.+. ..|.||=++..+.--.-+.-..+  ..+.+++.++++.+||+
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence            8 4444333   3566778999999875  5666654 47777766543322111111111  23455666677788885


Q ss_pred             ecCCCCcEEEEee-----CCc-------------ce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          234 PGLQKGQVRVEHY-----ASK-------------RT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       234 sGs~dg~V~i~d~-----~~~-------------~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                       |+.|+.++|+..     ..+             ++ .++....+.|..+.|+|+|..||=.+.|.+ |.+=|.....
T Consensus       164 -Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p~  239 (361)
T KOG1523|consen  164 -GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGPS  239 (361)
T ss_pred             -cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCCc
Confidence             999999999541     111             11 133455678999999999999999999999 8888876553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=2.3e-11  Score=112.15  Aligned_cols=210  Identities=12%  Similarity=0.098  Sum_probs=133.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|.+-|+|+.|+.||.+|++|+||. +.|||.-..+.+....-.|...|-++.+.+..+--++++|.     .|+.|+
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA-----gDk~i~  120 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA-----GDKLIK  120 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc-----CcceEE
Confidence            368999999999999999999999987 77999887777666654467788899998865544444443     469999


Q ss_pred             EEeCCCCcE----------EEEEeeC-CceeEEEEe---CCeEEEEE-CCEEEEEEcCCcE-------EEEEEe---ccC
Q 020784          160 IWDDHQSRC----------IGELSFR-SEVRSVKLR---RDRIIVVL-EQKIFVYNFADLK-------LLHQIE---TIA  214 (321)
Q Consensus       160 iWD~~~~~~----------~~~~~~~-~~v~~v~~~---~~~~~~~~-~~~I~iwd~~~~~-------~~~~l~---~~~  214 (321)
                      ++|+...+.          ...+..+ ..|..++..   |..+.+++ |++||-||++...       +...+.   ...
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999874221          1112222 245555543   34566665 5799999997411       111110   000


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--------c-----------ceEE-eeccc--------c---ceeE
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------K-----------RTKF-IMAHD--------S---RIAC  263 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--------~-----------~~~~-l~~H~--------~---~V~~  263 (321)
                      -...++.+++.- ..+||+ |+.|-..+++|...        +           .+.- -.+|-        .   .++-
T Consensus       201 ielk~ltisp~r-p~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  201 IELKCLTISPSR-PYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             heeeeeeecCCC-CceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            112356777653 356664 88888999988320        0           0111 11222        1   2567


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       264 vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      ++|+|+|.-|. .++.|..|.+||+..++-...+.
T Consensus       279 vtfnpNGtElL-vs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  279 VTFNPNGTELL-VSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             EEECCCCcEEE-EeeCCeEEEEEeecCCCCceeec
Confidence            89999997554 33445469999999988766554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=9e-10  Score=104.61  Aligned_cols=202  Identities=11%  Similarity=0.056  Sum_probs=127.9

Q ss_pred             EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe
Q 020784          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (321)
Q Consensus       108 v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~  187 (321)
                      +.+||.+..... .... +...+....|+++++.++.++...    ....|.+||+.+++......+.....+..|+++.
T Consensus       186 l~i~D~~g~~~~-~lt~-~~~~v~~p~wSpDg~~la~~s~~~----~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        186 LQVADSDGYNPQ-TILR-SAEPILSPAWSPDGKKLAYVSFER----GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEECCCCCCce-Eeec-CCCccccccCCCCCCEEEEEecCC----CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            567776544322 2221 345677778999999998876332    2357999999888765433444455577888764


Q ss_pred             --EEEEE--CC--EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc--EEEEeeCCcceEEeecccc
Q 020784          188 --IIVVL--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDS  259 (321)
Q Consensus       188 --~~~~~--~~--~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--V~i~d~~~~~~~~l~~H~~  259 (321)
                        +++..  ++  .|++||+.+++. +.+..+.......++++  |+..++++...+|.  |.+++..++....+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence              44332  22  799999988765 34443332223345544  55767664555565  4446665555554444445


Q ss_pred             ceeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          260 RIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       260 ~V~~vafspdg~~las~S~Dg--t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      .....+|||||++||..+.++  ..|.+||+.+++.. .+..+.......+++||++|+..+
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEE
Confidence            566899999999998765443  23899999988865 454443333458899999988764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=3.3e-10  Score=107.42  Aligned_cols=198  Identities=12%  Similarity=0.057  Sum_probs=125.0

Q ss_pred             cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC
Q 020784          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (321)
Q Consensus       107 gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~  186 (321)
                      .+.|||.+..... .... +...+....|+++++.++.++.+.    .+.+|.+||+.+++......+......+.|+++
T Consensus       185 ~i~i~d~dg~~~~-~lt~-~~~~v~~p~wSPDG~~la~~s~~~----~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQF-IVNR-SSQPLMSPAWSPDGSKLAYVSFEN----KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCce-Eecc-CCCccccceEcCCCCEEEEEEecC----CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence            3567776554322 2221 355678889999999998887432    235799999988764333333444557889886


Q ss_pred             e--EEEEE--CCE--EEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccc
Q 020784          187 R--IIVVL--EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD  258 (321)
Q Consensus       187 ~--~~~~~--~~~--I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~  258 (321)
                      .  ++.+.  ++.  |.+||+.+++. ..+..+........+++  |+..|+++...+|...||++..  +....+ .|.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~  334 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR  334 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence            4  55543  344  55557666554 44554444344455555  5566665566778888877643  323333 444


Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       259 ~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      .  .+.+|+|||++|+.++.++  +.+||+.+|+... +..........+++||++|+.++
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~-lt~~~~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEV-LSSTFLDESPSISPNGIMIIYSS  390 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEE-ecCCCCCCCceECCCCCEEEEEE
Confidence            4  5678999999999888765  4469999998653 32222333457899999998865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=7.8e-10  Score=104.83  Aligned_cols=204  Identities=14%  Similarity=0.079  Sum_probs=131.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC----CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~----~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      +...+.+.+|+|||+.||..+.    ..+.+|++.+++......+  .+......|+++++.++++....    ....|.
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~La~~~~~~----g~~~I~  270 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSKLAFALSKT----GSLNLY  270 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCEEEEEEcCC----CCcEEE
Confidence            4457899999999999986542    2367889887754332232  34455678999999888775321    124699


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC--C--EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~--~--~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +||+++++..........+....|+++.  ++.+.+  +  .|.++|+.+++. +.+...........+++  |+..+++
T Consensus       271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~Sp--DG~~Ia~  347 (429)
T PRK03629        271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS--DGKFMVM  347 (429)
T ss_pred             EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECC--CCCEEEE
Confidence            9999988765544444567788898864  544443  2  555667766544 34433222233345555  5566766


Q ss_pred             ecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCcEEEEEe
Q 020784          234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       234 sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt--~IrIWd~~tg~~i~~~~  298 (321)
                      .+..++  .|.+||+.++....+... .......|+|||++|+.++.|+.  .+.++++ +|+..+.+.
T Consensus       348 ~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~  414 (429)
T PRK03629        348 VSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP  414 (429)
T ss_pred             EEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc
Confidence            555444  466688877766655532 23457889999999999998875  2556666 466666664

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=3.1e-10  Score=98.11  Aligned_cols=155  Identities=16%  Similarity=0.200  Sum_probs=107.8

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC--c--EEEEEe-eCCceeEEEEeC----CeEEEEE-CCE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--R--CIGELS-FRSEVRSVKLRR----DRIIVVL-EQK  195 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~--~--~~~~~~-~~~~v~~v~~~~----~~~~~~~-~~~  195 (321)
                      |..-|.++.+.|.++.+|+++       .|++|+|||.+..  .  +....+ +.+.|..|.|-+    +.++.|+ |++
T Consensus        12 h~DlihdVs~D~~GRRmAtCS-------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCS-------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             CcceeeeeeecccCceeeecc-------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            455688889999999999999       7899999996543  2  222333 345888898853    2355554 689


Q ss_pred             EEEEEcC---------CcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeC-------------------
Q 020784          196 IFVYNFA---------DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-------------------  247 (321)
Q Consensus       196 I~iwd~~---------~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~-------------------  247 (321)
                      ++||.-.         ......++......+.-+.|++..-|..+|+ .+.||++||++.-                   
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            9999752         1223334444444555566666666677774 8888888887610                   


Q ss_pred             --------------------------------------------Cc-----ceEEeeccccceeEEEECCC-C---CEEE
Q 020784          248 --------------------------------------------SK-----RTKFIMAHDSRIACFALTQD-G---QLLA  274 (321)
Q Consensus       248 --------------------------------------------~~-----~~~~l~~H~~~V~~vafspd-g---~~la  274 (321)
                                                                  ..     .+.++.+|..+|+.|+|.|+ |   .+||
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence                                                        00     11245678999999999997 3   5799


Q ss_pred             EEeCCCcEEEEEEcCC
Q 020784          275 TSSTKGTLVRIFNTLD  290 (321)
Q Consensus       275 s~S~Dgt~IrIWd~~t  290 (321)
                      +++.||  ||||++..
T Consensus       244 vA~kDg--v~I~~v~~  257 (361)
T KOG2445|consen  244 VATKDG--VRIFKVKV  257 (361)
T ss_pred             EeecCc--EEEEEEee
Confidence            999998  89999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.7e-09  Score=102.57  Aligned_cols=202  Identities=12%  Similarity=0.057  Sum_probs=128.7

Q ss_pred             EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe
Q 020784          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (321)
Q Consensus       108 v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~  187 (321)
                      +.+||.+...... ... +...+....|+++++.++.++...    .+..|.+||+.+++......+...+....|+++.
T Consensus       181 l~~~d~dg~~~~~-lt~-~~~~~~~p~wSPDG~~la~~s~~~----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        181 LRVSDYDGYNQFV-VHR-SPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             EEEEcCCCCCCEE-eec-CCCceeeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            4455655433221 111 245677889999999998876321    2357999999888755444455556678898874


Q ss_pred             --EEEEE--CC--EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEE--eeCCcceEEeecccc
Q 020784          188 --IIVVL--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE--HYASKRTKFIMAHDS  259 (321)
Q Consensus       188 --~~~~~--~~--~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~--d~~~~~~~~l~~H~~  259 (321)
                        ++...  ++  .|.+||+.+++..+ +..+........++  +|+..|+++...+|...||  +..++....+..+..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence              44432  22  69999998876543 33332233334444  4557676645555655554  555555555555556


Q ss_pred             ceeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          260 RIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       260 ~V~~vafspdg~~las~S~Dg--t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      .+.+.+|+|||++||..+.++  ..|.+||+.+|+. ..+..........+++||++|+.++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECCCCCEEEEEE
Confidence            677899999999998876543  2388899999875 3454333333458899999998865

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.28  E-value=6.2e-11  Score=109.02  Aligned_cols=194  Identities=11%  Similarity=0.003  Sum_probs=132.0

Q ss_pred             EEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEE-EeeCCce
Q 020784          100 FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSFRSEV  178 (321)
Q Consensus       100 lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~-~~~~~~v  178 (321)
                      +++.+|+.+.|-+. .++.+..... |.+.+.+-.|.+++..+.+++       .||.||+|.- +|-...+ .++...|
T Consensus        79 ~i~s~DGkf~il~k-~~rVE~sv~A-H~~A~~~gRW~~dGtgLlt~G-------EDG~iKiWSr-sGMLRStl~Q~~~~v  148 (737)
T KOG1524|consen   79 LICSNDGRFVILNK-SARVERSISA-HAAAISSGRWSPDGAGLLTAG-------EDGVIKIWSR-SGMLRSTVVQNEESI  148 (737)
T ss_pred             EEEcCCceEEEecc-cchhhhhhhh-hhhhhhhcccCCCCceeeeec-------CCceEEEEec-cchHHHHHhhcCcee
Confidence            33444444555442 2333223333 677888888999999888888       7899999974 3332222 3456689


Q ss_pred             eEEEEeCC--eEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeec
Q 020784          179 RSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA  256 (321)
Q Consensus       179 ~~v~~~~~--~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~  256 (321)
                      +++.|.++  .++.|.++.+.|=-+.....+-..+.|.+-+.++++  ++-..+++ +|+.|-..+|||.....+.+-..
T Consensus       149 ~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W--~~~s~lI~-sgGED~kfKvWD~~G~~Lf~S~~  225 (737)
T KOG1524|consen  149 RCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSW--STQSNIIA-SGGEDFRFKIWDAQGANLFTSAA  225 (737)
T ss_pred             EEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeec--Ccccccee-ecCCceeEEeecccCcccccCCh
Confidence            99999875  456666777777777555555566777665555554  44557777 69999999999998888889999


Q ss_pred             cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       257 H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      |.-+|++|+|+|+ ..+|.+|.. + .|+=..+          ......++.|.||..++++.
T Consensus       226 ~ey~ITSva~npd-~~~~v~S~n-t-~R~~~p~----------~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  226 EEYAITSVAFNPE-KDYLLWSYN-T-ARFSSPR----------VGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             hccceeeeeeccc-cceeeeeee-e-eeecCCC----------ccceEEEEEcCCCceeeccc
Confidence            9999999999999 788888854 4 6622222          22334556677777776643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.27  E-value=5.3e-11  Score=106.09  Aligned_cols=141  Identities=17%  Similarity=0.229  Sum_probs=104.5

Q ss_pred             eCCceeEEEEeCCe---EEEEE-CCEEEEEEcCCc---------EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          174 FRSEVRSVKLRRDR---IIVVL-EQKIFVYNFADL---------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       174 ~~~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~---------~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      .+.+|+++.|+++.   ++.++ |..||+|-+...         +.+..+..|...+.++.|+++  +.+|| ||+.+|.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLA-Sg~D~g~   88 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLA-SGGDGGE   88 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeee-ecCCCce
Confidence            45578899988654   34443 469999987421         234455667777777777665  48898 6999999


Q ss_pred             EEEEeeC--------C-----c----ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc
Q 020784          241 VRVEHYA--------S-----K----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS  303 (321)
Q Consensus       241 V~i~d~~--------~-----~----~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~  303 (321)
                      |.+|-..        +     +    ..+.+.+|...|..++|+||+.+++++|.|.+ +++||+..|+++..+. +|..
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns-~~l~Dv~~G~l~~~~~-dh~~  166 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS-VRLWDVHAGQLLAILD-DHEH  166 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce-EEEEEeccceeEeecc-cccc
Confidence            9999765        2     1    12367899999999999999999999999999 9999999999998884 4554


Q ss_pred             eeEEEeecC--ceEEEee
Q 020784          304 AQSGLWLSS--AWLRVLR  319 (321)
Q Consensus       304 ~~~~~s~d~--~~la~~~  319 (321)
                      -...+.+|+  +|++..+
T Consensus       167 yvqgvawDpl~qyv~s~s  184 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASKS  184 (434)
T ss_pred             ccceeecchhhhhhhhhc
Confidence            444455554  7776543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.27  E-value=1.4e-10  Score=104.79  Aligned_cols=181  Identities=18%  Similarity=0.110  Sum_probs=118.4

Q ss_pred             cCCceEEEEEecCCC-eEEEEeCCCCCCCCCCcEEEEeCCCCc----EEEEE-eeCCceeEEEEeCC---eEEE-EECCE
Q 020784          126 RGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR----CIGEL-SFRSEVRSVKLRRD---RIIV-VLEQK  195 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~-~~~~~sg~~~~~~~d~~v~iWD~~~~~----~~~~~-~~~~~v~~v~~~~~---~~~~-~~~~~  195 (321)
                      +.+.|.++++++.-+ .++++|+      .-|+|-+||+.+.+    -+.-+ .+..+|.++.|++.   +++. ..||+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~Gd------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGD------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cccceEEEEecccCcceEEEEcc------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            578999999999777 4444443      24999999995322    12222 33457999999873   4444 46899


Q ss_pred             EEEEEcCCcE--EEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc--eEEeeccccceeEEEECCCC-
Q 020784          196 IFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDG-  270 (321)
Q Consensus       196 I~iwd~~~~~--~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~--~~~l~~H~~~V~~vafspdg-  270 (321)
                      ||+=|+.+..  .+..++........+.++.. +..+++  |..=|...+||.+...  +..+.-|+..|++|+++|-. 
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e-~~~vl~--~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE-SRSVLF--GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCC-CccEEE--eecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            9999997643  23333322222333444433 233443  5555688889887643  45678899999999999975 


Q ss_pred             CEEEEEeCCCcEEEEEEcCCCc-----EEEEEeCCCcceeEEEeecCceEE
Q 020784          271 QLLATSSTKGTLVRIFNTLDGT-----LLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       271 ~~las~S~Dgt~IrIWd~~tg~-----~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      .+|||||.|++ .+|||++...     .+.++..........||+++--|+
T Consensus       336 ~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~  385 (498)
T KOG4328|consen  336 WFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL  385 (498)
T ss_pred             hheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence            57999999999 9999998632     255554333333447787774443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=3.3e-09  Score=100.81  Aligned_cols=186  Identities=10%  Similarity=0.035  Sum_probs=124.5

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC----CEEEEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE----QKIFVY  199 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~----~~I~iw  199 (321)
                      +...+....|+++++.++.++...    .+..|.+||+.+++......+...+....|+++.  ++...+    ..|.+|
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  275 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYAN----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTM  275 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecC----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEE
Confidence            456788889999999988887432    2478999999988765433445566778888764  443332    368888


Q ss_pred             EcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEe
Q 020784          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       200 d~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S  277 (321)
                      |+.+++. ..+..+........+++  |+..+++....+|  .|.+++...+....+..+...+...+|+|||++||..+
T Consensus       276 d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        276 DLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             ECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEE
Confidence            9987765 34544433333455555  5566665444444  56667877766666655666778899999999998876


Q ss_pred             CCC--cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          278 TKG--TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       278 ~Dg--t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      .++  ..|.+||+.++. .+.+..+.......+++||++|+.++
T Consensus       353 ~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        353 QGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             cCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEE
Confidence            543  237888886554 34454444444558899999998764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=2.7e-09  Score=101.31  Aligned_cols=204  Identities=12%  Similarity=0.055  Sum_probs=127.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-C---cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~---gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      +...|.+.+|+|||+.|+..+. +   .+.+||+.+++......+  .+......|+++++.+++....+    ....|.
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~~~~~SpDG~~l~~~~s~~----g~~~Iy  275 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RGINGAPSFSPDGRRLALTLSRD----GNPEIY  275 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCccCceECCCCCEEEEEEeCC----CCceEE
Confidence            4457899999999999997764 2   377899987765333222  34445678899998887654221    134799


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC--C--EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~--~--~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +||+.+++...............|+++  .++.+.+  +  .|.++|+.+++.. .+..........++++  |+..+++
T Consensus       276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~Sp--DG~~Ia~  352 (433)
T PRK04922        276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSP--DGKKIAM  352 (433)
T ss_pred             EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECC--CCCEEEE
Confidence            999998876443333334456788875  3555543  2  5777787766543 3332222223345555  5566765


Q ss_pred             ecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEEe
Q 020784          234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       234 sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg--t~IrIWd~~tg~~i~~~~  298 (321)
                      ....++  .|.+|+..++....+. +.......+|+|||++|+..+.++  ..|.++++. |...+.+.
T Consensus       353 ~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~  419 (433)
T PRK04922        353 VHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV  419 (433)
T ss_pred             EECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc
Confidence            433333  5777998777666554 333456789999999888777642  236677774 44445553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.24  E-value=1e-09  Score=101.14  Aligned_cols=156  Identities=13%  Similarity=0.175  Sum_probs=107.0

Q ss_pred             CCCcEEEEeCCCCcEEEEEee-----CCceeEEEEeCC---eEEEE-ECCEEEEEEcC--------------CcEEEEEE
Q 020784          154 PLNKVMIWDDHQSRCIGELSF-----RSEVRSVKLRRD---RIIVV-LEQKIFVYNFA--------------DLKLLHQI  210 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~-----~~~v~~v~~~~~---~~~~~-~~~~I~iwd~~--------------~~~~~~~l  210 (321)
                      .-|.|.+.|....+....+..     ...|+++.|-+.   .++++ .++.+.+||..              .+......
T Consensus       193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~  272 (636)
T KOG2394|consen  193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL  272 (636)
T ss_pred             ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence            347788888766433222221     247899998642   23333 46788888652              11111111


Q ss_pred             e--c--cCCCC--------ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEe
Q 020784          211 E--T--IANPK--------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       211 ~--~--~~~~~--------~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S  277 (321)
                      .  .  ..+++        .+..|++.+|+.+||+ -+.||.+||+++.+..+. .++..=+...||+|||||+|+|||+
T Consensus       273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~-VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG  351 (636)
T KOG2394|consen  273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLAT-VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG  351 (636)
T ss_pred             eeeccccCCccceeEeccccccceeEcCCCceEEE-EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence            1  1  11222        2334455557899996 899999999998776644 5666667899999999999999999


Q ss_pred             CCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecC
Q 020784          278 TKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       278 ~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                      +|.- |.||.+..++++..- .||..=+..+.||+
T Consensus       352 EDDL-VtVwSf~erRVVARG-qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  352 EDDL-VTVWSFEERRVVARG-QGHKSWVSVVAFDP  384 (636)
T ss_pred             Ccce-EEEEEeccceEEEec-cccccceeeEeecc
Confidence            9998 999999999999866 67887777778886

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=1.3e-09  Score=105.48  Aligned_cols=226  Identities=13%  Similarity=0.137  Sum_probs=151.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGF-RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv-~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      +=|-++|++++|+.||.+|.+|+.-+| .+|.+++.+..+-..+  ++.|..+.+++++++.+++.       .|+.|.+
T Consensus       248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL--gs~I~~i~vS~ds~~~sl~~-------~DNqI~l  318 (792)
T KOG1963|consen  248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL--GSPILHIVVSPDSDLYSLVL-------EDNQIHL  318 (792)
T ss_pred             EecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc--CCeeEEEEEcCCCCeEEEEe-------cCceEEE
Confidence            446679999999999999999999765 5999999987776666  78999999999999999888       6799988


Q ss_pred             EeCCCCcEEEEEee---C---------CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEecc-----CCC----
Q 020784          161 WDDHQSRCIGELSF---R---------SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETI-----ANP----  216 (321)
Q Consensus       161 WD~~~~~~~~~~~~---~---------~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~-----~~~----  216 (321)
                      -...+......+.+   .         +-.+.+++++.  .++..+ .+.|.+||+.+.+.+.+++..     ...    
T Consensus       319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~  398 (792)
T KOG1963|consen  319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ  398 (792)
T ss_pred             EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence            87654443333222   1         22456777773  233333 369999999887777766431     111    


Q ss_pred             CceEEEeeCCCceEEEee-------cCCCCcEEE--EeeCCcc----eE--EeeccccceeEEEECC-CCC-EEEEEeCC
Q 020784          217 KGLCAVSQGVGSLVLVCP-------GLQKGQVRV--EHYASKR----TK--FIMAHDSRIACFALTQ-DGQ-LLATSSTK  279 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~s-------Gs~dg~V~i--~d~~~~~----~~--~l~~H~~~V~~vafsp-dg~-~las~S~D  279 (321)
                      +.+.++...-.+.+++..       ...||.+.+  |-+....    +.  ....|...+...+|.+ ... .++|+|.|
T Consensus       399 v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d  478 (792)
T KOG1963|consen  399 VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD  478 (792)
T ss_pred             EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence            223333333345677641       345776666  8765432    22  3457988877777753 333 79999999


Q ss_pred             CcEEEEEEcCCCc----------E--EEEEeCCCcceeEEEeecCceEEEe
Q 020784          280 GTLVRIFNTLDGT----------L--LQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       280 gt~IrIWd~~tg~----------~--i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      |. +|||-+..-+          |  +..| ........+|+-||..||++
T Consensus       479 g~-~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~dGslla~s  527 (792)
T KOG1963|consen  479 GD-FKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQDGSLLAVS  527 (792)
T ss_pred             Ce-EEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCCCcEEEEe
Confidence            99 9999984322          1  2222 22233345888999999885

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=5.6e-09  Score=98.99  Aligned_cols=186  Identities=13%  Similarity=0.054  Sum_probs=118.1

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE--CCE--EEEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQK--IFVY  199 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--~~~--I~iw  199 (321)
                      +...+....|+++++.++.++...    ....|.+||+.+++......+...+....|+++.  ++...  ++.  |.++
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~----~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFES----KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            356677889999999998877432    2356999999988765444455566778898864  44433  344  5555


Q ss_pred             EcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEee--CCcceEEeeccccceeEEEECCCCCEEEEEe
Q 020784          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       200 d~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~--~~~~~~~l~~H~~~V~~vafspdg~~las~S  277 (321)
                      |+..++ .+.+..+........+++  |+..+++.+..+|...||.+  ..+....+..+.......+|||||++||..+
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEE
Confidence            555544 344544333333445555  55666654555566677654  3444333333334455789999999999877


Q ss_pred             CCC--cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          278 TKG--TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       278 ~Dg--t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      .++  ..|.+||+.+++.. .+..+.......+++||++|+.++
T Consensus       347 ~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             ccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEE
Confidence            654  13999999998764 343333334458899999998875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.21  E-value=5e-10  Score=94.53  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=75.3

Q ss_pred             CCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCc
Q 020784          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGT  292 (321)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~D---gt~IrIWd~~tg~  292 (321)
                      ++..++++|+++ .++++.|..++.|.+||.+.+.+..+  +...++.|.|||+|++||+|+.+   |. |++||+++.+
T Consensus        61 ~I~~~~WsP~g~-~favi~g~~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~  136 (194)
T PF08662_consen   61 PIHDVAWSPNGN-EFAVIYGSMPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKK  136 (194)
T ss_pred             ceEEEEECcCCC-EEEEEEccCCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCE
Confidence            344445555443 23344588888999999976656555  45678999999999999998754   56 9999999999


Q ss_pred             EEEEEeCCCcceeEEEeecCceEEEeec
Q 020784          293 LLQEECCPSISAQSGLWLSSAWLRVLRT  320 (321)
Q Consensus       293 ~i~~~~~g~~~~~~~~s~d~~~la~~~~  320 (321)
                      .+.+++.. ....+.+++||+||+++.+
T Consensus       137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  137 KISTFEHS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             EeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence            99988543 3456689999999999865

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.2e-08  Score=96.99  Aligned_cols=204  Identities=7%  Similarity=-0.023  Sum_probs=128.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC----CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~----~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .+...|.+.+|+|||+.|+..+.    ..+.+||+.+++......  +.+.+....|+++++.+++....+    ....|
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~--~~g~~~~~~~SPDG~~la~~~~~~----g~~~I  272 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN--FPGMTFAPRFSPDGRKVVMSLSQG----GNTDI  272 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--CCCcccCcEECCCCCEEEEEEecC----CCceE
Confidence            45568999999999999987653    237799998776532222  245566778999999887665321    12458


Q ss_pred             EEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      .+||+.++................|+++  .++..++    ..|.+||+..++. +.+..+........+++  |+..|+
T Consensus       273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~Sp--dG~~ia  349 (435)
T PRK05137        273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSP--RGDLIA  349 (435)
T ss_pred             EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECC--CCCEEE
Confidence            8889988776443333334556788876  3555543    2788899876654 33433222233345555  556666


Q ss_pred             eecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC-----cEEEEEEcCCCcEEEEE
Q 020784          233 CPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       233 ~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg-----t~IrIWd~~tg~~i~~~  297 (321)
                      +.....+  .|.+++...+....+. +...+....|+|||+.|+..+.++     ..+.+.|+..++. +.+
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l  419 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV  419 (435)
T ss_pred             EEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEc
Confidence            5443333  4556787655544443 233578899999999887765532     2377778766554 444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=4.8e-10  Score=110.39  Aligned_cols=192  Identities=15%  Similarity=0.210  Sum_probs=123.3

Q ss_pred             EEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEE-ecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           90 HISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      -+.|.+..-+|.++++ +.|||||.+.-..+....+..+..+..+.. ...++.++.+-       .||.||+||.+...
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf-------aDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF-------ADGSVRVYDRRMAP 1242 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee-------cCCceEEeecccCC
Confidence            3568876555555554 889999998776655554422233344333 22355555443       68999999987542


Q ss_pred             ---EEEEEe-eCC--ceeEEEEeCCe---EEE-EECCEEEEEEcCCcEE--EEEEeccCCCC-ceEEEeeCCCceEEEee
Q 020784          168 ---CIGELS-FRS--EVRSVKLRRDR---IIV-VLEQKIFVYNFADLKL--LHQIETIANPK-GLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       168 ---~~~~~~-~~~--~v~~v~~~~~~---~~~-~~~~~I~iwd~~~~~~--~~~l~~~~~~~-~~~~~s~~~d~~~la~s  234 (321)
                         .+.... +..  .|..+.+.+.+   ++. +++|.|++||++....  .-++..+-... ...++..+....++| +
T Consensus      1243 ~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA-s 1321 (1387)
T KOG1517|consen 1243 PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA-S 1321 (1387)
T ss_pred             ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeee-e
Confidence               233332 222  37788887632   333 3578999999986322  12222222112 144444454557888 4


Q ss_pred             cCCCCcEEEEeeCCcceEEeecc-------ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          235 GLQKGQVRVEHYASKRTKFIMAH-------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~~l~~H-------~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      |+. +.|+||+.....+..++.+       .+.+.|++|+|---+||.|+.|.+ |.|+.-..+
T Consensus      1322 Gs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~-V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST-VSIYSCEKP 1383 (1387)
T ss_pred             cCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce-EEEeecCCc
Confidence            888 8999999988777655543       457899999999999999999998 999876554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.4e-08  Score=96.22  Aligned_cols=202  Identities=13%  Similarity=0.104  Sum_probs=121.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-Cc---EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~-~g---v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .+...|.+.+|+|||+.|+..+. ++   +.+||+.+++......+  .+......|+++++.+++...      .++..
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~~~SPDG~~la~~~~------~~g~~  264 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAPAWSPDGRTLAVALS------RDGNS  264 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEc------cCCCc
Confidence            34567899999999999987764 22   77899988765433222  445567789999998887543      23555


Q ss_pred             EEE--eCCCCcEEEEEee-CCceeEEEEeCCe--EEEEEC--CEEEEE--EcCCcEEEEEEeccCCCCceEEEeeCCCce
Q 020784          159 MIW--DDHQSRCIGELSF-RSEVRSVKLRRDR--IIVVLE--QKIFVY--NFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       159 ~iW--D~~~~~~~~~~~~-~~~v~~v~~~~~~--~~~~~~--~~I~iw--d~~~~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      .||  |...+.. ..+.. ........|+++.  ++.+++  +...+|  ++.+++. +.+..........++++  |+.
T Consensus       265 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~Sp--DG~  340 (427)
T PRK02889        265 QIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISP--DGK  340 (427)
T ss_pred             eEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECC--CCC
Confidence            555  5555443 33332 2345567788763  554443  344445  5555443 22322222222345555  557


Q ss_pred             EEEeecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcE--EEEEEcCCCcEEEEEe
Q 020784          230 VLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL--VRIFNTLDGTLLQEEC  298 (321)
Q Consensus       230 ~la~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~--IrIWd~~tg~~i~~~~  298 (321)
                      .+++....+|  .|.+||+.++....+..+ ......+|+|||+.|+.++.++..  +.+-++ +|+..+.+.
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~  411 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS  411 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee
Confidence            7776444444  577799887766655433 345788999999998888766631  333344 466555553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.14  E-value=2.5e-08  Score=94.03  Aligned_cols=184  Identities=13%  Similarity=0.055  Sum_probs=121.9

Q ss_pred             CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC----CEEEEEE
Q 020784          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE----QKIFVYN  200 (321)
Q Consensus       127 ~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~----~~I~iwd  200 (321)
                      ...+....|+++++.++.+....    ....|.+||+.+++......+...+.+..|+++.  ++...+    ..|.+||
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            44567778899999998876332    2367999999988765444455566778898763  544432    3799999


Q ss_pred             cCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeC
Q 020784          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~  278 (321)
                      +.+++. ..+..+........+++  |+..|+++...+|  .|.+++..++....+..+...+..++|+|+|++|+.++.
T Consensus       265 ~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       265 LDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             CCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence            987654 33333332223345554  5566655444444  466677766666666666777889999999999998887


Q ss_pred             CC---cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          279 KG---TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       279 Dg---t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ++   . |.+||+.++... .+..........+++||++|++++
T Consensus       342 ~~~~~~-i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       342 EGGGFN-IAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             cCCceE-EEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEE
Confidence            76   5 889999887653 332222223347889999988764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.12  E-value=1.3e-09  Score=95.21  Aligned_cols=195  Identities=14%  Similarity=0.068  Sum_probs=129.2

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      -++|||+|+++|+.++-.+.|=|.++.+.......  -..|..++|..+...+..+.      +.++.|.+|++...+..
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~------yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVA------YKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeee------eccceEEEEEeecceeE
Confidence            38899999999999987777878777654322221  23466778877666555443      35789999999998887


Q ss_pred             EEEeeCC-ceeEEEEeCCe--EEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec---------
Q 020784          170 GELSFRS-EVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG---------  235 (321)
Q Consensus       170 ~~~~~~~-~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG---------  235 (321)
                      ..++... .+.+++|+++.  ++..+  +-.|.+|.+.+.+... ++......  -.+++++|+++.|+..         
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~--kg~~f~~dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNV--KGYAFHPDGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCc--eeEEECCCCceeeeeecccHHHHHH
Confidence            7777654 67889999986  22222  3599999998765432 22222222  3334444556555421         


Q ss_pred             -------------------------CCCCc-EEEEeeCCcceEEeeccc-cceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          236 -------------------------LQKGQ-VRVEHYASKRTKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       236 -------------------------s~dg~-V~i~d~~~~~~~~l~~H~-~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                                               +-||. +.+||.-. ..+.+..|. -.+..++|+|.+++||.||.|+. +||-|-
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh  239 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNH  239 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-hheeeeeeeccceeEEEeccccceEEeeccchh-hhhhce
Confidence                                     11443 44476422 233444554 56999999999999999999999 999887


Q ss_pred             CCCcEEEEE
Q 020784          289 LDGTLLQEE  297 (321)
Q Consensus       289 ~tg~~i~~~  297 (321)
                      -+-+.+.+|
T Consensus       240 ~tWk~f~ef  248 (447)
T KOG4497|consen  240 FTWKPFGEF  248 (447)
T ss_pred             eeeeehhhh
Confidence            766655443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=3.7e-08  Score=82.94  Aligned_cols=186  Identities=12%  Similarity=0.074  Sum_probs=117.8

Q ss_pred             CCeEEEEEcCCC-CEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDH-GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg-~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ..|+++-..|.. ..|..|+|..+.-||+++++....... |..-+-++.-.. .+..++ +|+     .||++||||++
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~-~~~qil-sG~-----EDGtvRvWd~k  186 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRN-ANGQIL-SGA-----EDGTVRVWDTK  186 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-Ccceeeeeeecc-cCccee-ecC-----CCccEEEEecc
Confidence            378999999765 455555555566999999987555443 444444443322 222233 333     58999999999


Q ss_pred             CCcEEEEEeeC-----------CceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          165 QSRCIGELSFR-----------SEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       165 ~~~~~~~~~~~-----------~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +++++..+..-           .-|.+++.+.+.++++.+..+.+|.++..+...+|..... +..+.|-.  | ++++ 
T Consensus       187 t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~-v~~v~F~~--d-~vl~-  261 (325)
T KOG0649|consen  187 TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPAR-VHLVDFVD--D-CVLI-  261 (325)
T ss_pred             ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccc-eeEeeeec--c-eEEE-
Confidence            99998876521           2367788888888888888999999999998888865432 33444433  2 4554 


Q ss_pred             ecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEE-EeCCCcEEEEE
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIF  286 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las-~S~Dgt~IrIW  286 (321)
                       |+....|.-|.++.........-...+++..++-.--.++| ++..+. +.|+
T Consensus       262 -~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~-~~i~  313 (325)
T KOG0649|consen  262 -GGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNK-LHIL  313 (325)
T ss_pred             -eccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEeccccee-eeee
Confidence             55556777787754333344444445666666644444444 344444 5555

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.12  E-value=7.9e-09  Score=96.35  Aligned_cols=156  Identities=13%  Similarity=0.148  Sum_probs=115.4

Q ss_pred             CCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC----CceeEEEEe------C--------------C--eEEEEE
Q 020784          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR----SEVRSVKLR------R--------------D--RIIVVL  192 (321)
Q Consensus       139 ~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~----~~v~~v~~~------~--------------~--~~~~~~  192 (321)
                      ..++|...       .||.+||||..+++...+|.-.    +.-++..|.      +              +  .++.++
T Consensus         5 ~~~~A~~~-------~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    5 LDYFALST-------GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             hheEeecC-------CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            34566666       5699999999999988877532    222222221      1              1  233333


Q ss_pred             -CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCC
Q 020784          193 -EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDG  270 (321)
Q Consensus       193 -~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg  270 (321)
                       .+.|-+|++..+++-.++.+..++..+.++..+.+ ....+|++.|+.|.+|+...+.. ..++.-...+.+++++|||
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence             36999999999999999987777666766664433 22334789999999999988764 4778888899999999999


Q ss_pred             CEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE
Q 020784          271 QLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS  306 (321)
Q Consensus       271 ~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~  306 (321)
                      ..|++||.  . |++||+++++.+.+| .||...+.
T Consensus       157 ~~l~~as~--~-ik~~~~~~kevv~~f-tgh~s~v~  188 (541)
T KOG4547|consen  157 KILLTASR--Q-IKVLDIETKEVVITF-TGHGSPVR  188 (541)
T ss_pred             CEEEeccc--e-EEEEEccCceEEEEe-cCCCcceE
Confidence            99999973  3 999999999999999 57775544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=9.1e-09  Score=90.93  Aligned_cols=190  Identities=16%  Similarity=0.148  Sum_probs=118.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      -.++.++|++.-..||++.. +.|||||... .+....+......+.+++|.+-+.....++       ..+.|.||...
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavg-------Cr~gIciW~~s  170 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVG-------CRAGICIWSDS  170 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeee-------ecceeEEEEcC
Confidence            47889999997777887776 6788999765 322223221246789999988655443333       24679999754


Q ss_pred             CC----cEE--------EEEee--CCceeEEEEeCCeEEEEE----CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC
Q 020784          165 QS----RCI--------GELSF--RSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       165 ~~----~~~--------~~~~~--~~~v~~v~~~~~~~~~~~----~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      ..    ..+        ..++.  +..|+++.|+++....++    +..|+|||..++..+.-.......+....++|++
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG  250 (445)
T ss_pred             cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC
Confidence            22    111        11222  347999999998755443    3599999998876654432233334456677765


Q ss_pred             CceEEEeecCCCCcEEEEeeCC-cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          227 GSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~-~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      | .++|  .+.|+..++|.... .......--.+.|...+|+|+|++|.-++..-.  +|+.+
T Consensus       251 d-~lfa--At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl  308 (445)
T KOG2139|consen  251 D-VLFA--ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSL  308 (445)
T ss_pred             C-EEEE--ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEE
Confidence            4 3444  58899999995432 211111222348999999999987654443322  35544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.08  E-value=2.3e-07  Score=86.07  Aligned_cols=197  Identities=14%  Similarity=0.140  Sum_probs=126.9

Q ss_pred             CEEE-EEcC-CcEEEEEecCCceeEEeeeecCCce-EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee
Q 020784           98 GCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (321)
Q Consensus        98 ~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~~~~v-~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (321)
                      ++++ +-.+ +.|.|.|.++.+.+.....  .+.. ..+.++++++.+.+++       .|+.|.++|+.+++.+.++..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~-------rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVAN-------RDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEE-------TTSEEEEEETTSSSEEEEEE-
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEc-------CCCeEEEEECCcccEEEEEec
Confidence            3443 3444 5588999999887766663  3444 3346678889888887       579999999999999999999


Q ss_pred             CCceeEEEEeCC--eEEEE--ECCEEEEEEcCCcEEEEEEeccCCCC-----ceEEEeeCCCceEEEeecCCCCcEEEEe
Q 020784          175 RSEVRSVKLRRD--RIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (321)
Q Consensus       175 ~~~v~~v~~~~~--~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~-----~~~~~s~~~d~~~la~sGs~dg~V~i~d  245 (321)
                      .....+++++++  .++++  ..+.+.++|.++.+.++++.....+.     ...++-..+.+..++++--..+.|.+.|
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            888899999875  45554  35899999999999999987643222     3444433334343332345557787777


Q ss_pred             eCCc-ceE-EeeccccceeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEeCCCcce
Q 020784          246 YASK-RTK-FIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEECCPSISA  304 (321)
Q Consensus       246 ~~~~-~~~-~l~~H~~~V~~vafspdg~~las~S~-Dgt~IrIWd~~tg~~i~~~~~g~~~~  304 (321)
                      +... .+. .............|+|+|+||+.+.. ++. |-++|+++++++..+..|....
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i~~g~~p~  217 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALIDTGKKPH  217 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEEE-SSSBE
T ss_pred             eccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEeecccccc
Confidence            6553 232 33334556778999999998776544 445 9999999999998887765543

...

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.07  E-value=1.3e-09  Score=102.27  Aligned_cols=196  Identities=13%  Similarity=0.164  Sum_probs=123.0

Q ss_pred             CCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCce-------eEEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCC
Q 020784           86 PTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFRE-------IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPL  155 (321)
Q Consensus        86 ~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~-------~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d  155 (321)
                      ..|+.+.|+| |...||+++++| |+||.+...+.       ...... |...|..+.|++ ..+.+++++       .|
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~as-------yd  699 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAVAS-------YD  699 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhhhh-------cc
Confidence            4789999999 778899999988 67999865432       112222 567788888876 345666666       68


Q ss_pred             CcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCeE---EEEECCEEEEEEcCCcEEEEEEeccCCCCc--eEEEeeCCCce
Q 020784          156 NKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRI---IVVLEQKIFVYNFADLKLLHQIETIANPKG--LCAVSQGVGSL  229 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~~---~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~--~~~~s~~~d~~  229 (321)
                      -+|++||++++.....+..+ ..|..++|++++-   .+|-|++|++|+-+..+.  -+.....+++  -..+-+..|+.
T Consensus       700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr  777 (1012)
T KOG1445|consen  700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGR  777 (1012)
T ss_pred             ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCc
Confidence            99999999998877666655 5899999998753   345678999999976543  2222222222  12233333456


Q ss_pred             EEEeecCC---CCcEEEEeeCC---cceEEeeccccceeEE-EECCC-CCEEEEEeCCCcEEEEEEcCCCc
Q 020784          230 VLVCPGLQ---KGQVRVEHYAS---KRTKFIMAHDSRIACF-ALTQD-GQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       230 ~la~sGs~---dg~V~i~d~~~---~~~~~l~~H~~~V~~v-afspd-g~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      +++++|..   ...|.+|+.+.   ..+.+..--..+-.-| .+.+| +.+|+||=.|.. |.+|.+-...
T Consensus       778 ~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~-v~~yEv~~es  847 (1012)
T KOG1445|consen  778 IVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRF-VNMYEVIYES  847 (1012)
T ss_pred             EEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCce-EEEEEecCCC
Confidence            77666753   33566676543   2333221111111111 23344 457888877888 9999876543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.06  E-value=1.5e-06  Score=80.13  Aligned_cols=223  Identities=16%  Similarity=0.146  Sum_probs=136.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-----cEEEEEecCC--ceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           87 TLLHISFNQDHGCFAAGTDH-----GFRIYNCDPF--REIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~-----gv~vw~~~~~--~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .-..+++++++++|.+....     +|..|.++..  +........ .+..-..+++.++++.++++.-      .+++|
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~v  111 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGSV  111 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------TTTEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCeE
Confidence            44568899999999887652     4778888764  332222221 2445567788889998888763      46899


Q ss_pred             EEEeCCC-CcEEEE---Eee-----------CCceeEEEEeCC--eEEEEE--CCEEEEEEcCCcE--E--EEEEeccCC
Q 020784          159 MIWDDHQ-SRCIGE---LSF-----------RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLK--L--LHQIETIAN  215 (321)
Q Consensus       159 ~iWD~~~-~~~~~~---~~~-----------~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~--~--~~~l~~~~~  215 (321)
                      .++++.. +.....   +.+           ...+.++.++++  .++++.  .+.|++|++....  +  ...+.....
T Consensus       112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            9999986 433222   211           235778889876  455553  3699999996543  3  233332211


Q ss_pred             CC-ceEEEeeCCCceEEEeecCCCCcEEEEeeC--CcceEE---ee----cc--ccceeEEEECCCCCEEEEEeC-CCcE
Q 020784          216 PK-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKF---IM----AH--DSRIACFALTQDGQLLATSST-KGTL  282 (321)
Q Consensus       216 ~~-~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~---l~----~H--~~~V~~vafspdg~~las~S~-Dgt~  282 (321)
                      .. .-+.|++  ++.++.+....++.|.++++.  .+.+..   +.    +.  ......|+++|||++|..+.. .++ 
T Consensus       192 ~GPRh~~f~p--dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s-  268 (345)
T PF10282_consen  192 SGPRHLAFSP--DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS-  268 (345)
T ss_dssp             SSEEEEEE-T--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE-
T ss_pred             CCCcEEEEcC--CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE-
Confidence            11 2345555  445554457888899997776  333221   11    11  125889999999998766554 555 


Q ss_pred             EEEEEc--CCCc--EEEEEeC-CCcceeEEEeecCceEEEe
Q 020784          283 VRIFNT--LDGT--LLQEECC-PSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       283 IrIWd~--~tg~--~i~~~~~-g~~~~~~~~s~d~~~la~~  318 (321)
                      |-+|++  .+|+  .+..+.. |.....+.+++||+||+|+
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va  309 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA  309 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred             EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence            999999  3454  3455554 4546677899999999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=9.4e-08  Score=90.15  Aligned_cols=203  Identities=10%  Similarity=0.056  Sum_probs=124.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC----CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~----~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      +...+.+.+|+|||++||.+..    ..+.+||+.+++......+  .+......|+++++.+++.....    ....|.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--~~~~~~~~~spDg~~l~~~~~~~----~~~~i~  261 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF--PGMNGAPAFSPDGSKLAVSLSKD----GNPDIY  261 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEECCC----CCccEE
Confidence            3346889999999999997654    2377999988755433332  44556678899998887665321    235799


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +||+.++.......+........|+++  .++.+.+    ..|.++|+.+++. ..+..+........+++  ++..+++
T Consensus       262 ~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~sp--dg~~i~~  338 (417)
T TIGR02800       262 VMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSP--DGDLIAF  338 (417)
T ss_pred             EEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECC--CCCEEEE
Confidence            999988765433333333445667664  4555543    2788888877654 33433333333445555  4566665


Q ss_pred             ecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCcEEEEE
Q 020784          234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEE  297 (321)
Q Consensus       234 sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt--~IrIWd~~tg~~i~~~  297 (321)
                      +....+  .|.+++..++....+..+ ......+|+|||++|+..+.++.  .+.+.+ .+|+....+
T Consensus       339 ~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~-~~g~~~~~~  404 (417)
T TIGR02800       339 VHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVS-TDGRFRARL  404 (417)
T ss_pred             EEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEE-CCCceeeEC
Confidence            444333  556688776655544433 23456789999999888877653  244444 345554444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.04  E-value=6.1e-08  Score=89.85  Aligned_cols=216  Identities=11%  Similarity=0.075  Sum_probs=123.7

Q ss_pred             EEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      ..+.|++||+++.+.+.++ +.++|+.+.+.+.....  +..-..+++++++++++++..      .++++.|+|.++.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle  111 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLE  111 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEec------CCCceeEecccccc
Confidence            3467999999988777655 77999999998766664  566777899999999887762      46999999999999


Q ss_pred             EEEEEeeCC--------ceeEEEEeCC--eEEEEEC--CEEEEEEcCCcEEE--EEEeccCCCCceEEEeeCCCceEEEe
Q 020784          168 CIGELSFRS--------EVRSVKLRRD--RIIVVLE--QKIFVYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       168 ~~~~~~~~~--------~v~~v~~~~~--~~~~~~~--~~I~iwd~~~~~~~--~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      .+..+....        .+.++...+.  .++++..  +.|-+.|..+.+.+  ..+....   .......++++.++.+
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEE
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc---cccccccCcccceeee
Confidence            888776432        3455554332  3444443  57777787654322  3333221   2334444555554433


Q ss_pred             ecCCCCcEEEEeeCCcc--------------------------------------------------------eEEeecc
Q 020784          234 PGLQKGQVRVEHYASKR--------------------------------------------------------TKFIMAH  257 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~--------------------------------------------------------~~~l~~H  257 (321)
                      ....+..|-++|..++.                                                        +.++...
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            22333344444332211                                                        1122222


Q ss_pred             ccceeEEEECCCCCEEEEE----eCCCcEEEEEEcCCCcEEEEEeCCCc--ceeEEEeecCceEEE
Q 020784          258 DSRIACFALTQDGQLLATS----STKGTLVRIFNTLDGTLLQEECCPSI--SAQSGLWLSSAWLRV  317 (321)
Q Consensus       258 ~~~V~~vafspdg~~las~----S~Dgt~IrIWd~~tg~~i~~~~~g~~--~~~~~~s~d~~~la~  317 (321)
                      ... .-+.-+|+++++...    ...++ |.|+|.++.+.++++..+..  .....|+.||+++-+
T Consensus       269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v  332 (369)
T PF02239_consen  269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV  332 (369)
T ss_dssp             SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred             CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence            222 567889999999887    44466 99999999999988865444  556688999986544

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=8.6e-10  Score=99.76  Aligned_cols=210  Identities=18%  Similarity=0.096  Sum_probs=149.9

Q ss_pred             CcccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecC-CceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP-FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~-~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      |..+.+|+..|+.|.-+- .+++.+++-+| ++.|.-.. ....+..+++ |-+.+..++.+.++.++++++.      .
T Consensus         2 yeksymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d------~   74 (558)
T KOG0882|consen    2 YEKSYMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED------P   74 (558)
T ss_pred             cchhhcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC------c
Confidence            567889999999887654 56788888776 67998655 4455555553 5566677777777776666551      2


Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeEEEEeC---C---eEEEEE--CCEEEEEEcCC-c-EEEEEEeccCCCCceEEEee
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRR---D---RIIVVL--EQKIFVYNFAD-L-KLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~---~---~~~~~~--~~~I~iwd~~~-~-~~~~~l~~~~~~~~~~~~s~  224 (321)
                      |+.+|++|+++...+..++...-+..++|..   +   .+++..  ++.|.++|-.. . +....-..|.+++.+..+.+
T Consensus        75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q  154 (558)
T KOG0882|consen   75 DHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ  154 (558)
T ss_pred             ccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec
Confidence            7999999999888777777666555666542   1   233332  46999999753 2 33334455778888888887


Q ss_pred             CCCceEEEeecCCCCcEEEEeeCC------cc----------eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYAS------KR----------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~------~~----------~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      .+|.  ++ |+...|+|..|....      ..          +..+...++...++.|+|+|..+++-+.|.+ ||+|++
T Consensus       155 a~Ds--~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~  230 (558)
T KOG0882|consen  155 AGDS--AV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVF  230 (558)
T ss_pred             cccc--ee-eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEe
Confidence            7653  33 578889999998652      11          1124455778999999999999999999999 999999


Q ss_pred             CCCcEEEEEe
Q 020784          289 LDGTLLQEEC  298 (321)
Q Consensus       289 ~tg~~i~~~~  298 (321)
                      ++|++++.++
T Consensus       231 KtGklvqeiD  240 (558)
T KOG0882|consen  231 KTGKLVQEID  240 (558)
T ss_pred             ccchhhhhhh
Confidence            9999887664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.5e-07  Score=89.40  Aligned_cols=203  Identities=13%  Similarity=0.079  Sum_probs=123.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-C---cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~---gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      +...+...+|+|||++|+..+. +   .+.+|++++++.......  .+......|+++++.+++.....    .+..|.
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~g~~~~~~~SpDG~~la~~~~~~----g~~~Iy  270 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--EGLNGAPAWSPDGSKLAFVLSKD----GNPEIY  270 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--CCCcCCeEECCCCCEEEEEEccC----CCceEE
Confidence            4457899999999999987654 2   266888887765332222  34445678899999888655321    124688


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +||+++++...............|+++  .++...+    ..|.++|+.+++.. .+...........+++  |+..+++
T Consensus       271 ~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Sp--dg~~i~~  347 (430)
T PRK00178        271 VMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSA--DGKTLVM  347 (430)
T ss_pred             EEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECC--CCCEEEE
Confidence            999998875443333334556778765  4555543    27888888777643 3322222222345555  4566766


Q ss_pred             ecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEE
Q 020784          234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       234 sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg--t~IrIWd~~tg~~i~~~  297 (321)
                      ....+|  .|.++|+.++....+.. ........|+|||++++-.+.++  ..|.++++. |...+.+
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l  413 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPL  413 (430)
T ss_pred             EEccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC
Confidence            554455  35568887766555542 22334568999999988776543  225566664 4443444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=8.8e-08  Score=91.32  Aligned_cols=203  Identities=13%  Similarity=0.088  Sum_probs=121.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-Cc---EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~-~g---v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ...+.+.+|+|||++|+..+. ++   +.+||+.+++......+  .+......|+++++.++++...+    ....|.+
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~  290 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGKKLALVLSKD----GQPEIYV  290 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCCeeECCCCCEEEEEEeCC----CCeEEEE
Confidence            346788999999999987654 22   56778877654322222  23344568899999888765321    1235888


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      ||+.+++...............|+++  .++...+    ..|.++|+.+++.. .+..........++++  |+..++++
T Consensus       291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~Sp--DG~~l~~~  367 (448)
T PRK04792        291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITP--DGRSMIMV  367 (448)
T ss_pred             EECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECC--CCCEEEEE
Confidence            89988765433333334566788876  3444443    26778888776643 3322212222345555  44666665


Q ss_pred             cCCCCcEEE--EeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCcEEEEEe
Q 020784          235 GLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       235 Gs~dg~V~i--~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt--~IrIWd~~tg~~i~~~~  298 (321)
                      +..++...|  +|+.++....+.... .....+|+|||+.|+-.+.++.  .+.++++ +|+..+.+.
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~  433 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP  433 (448)
T ss_pred             EecCCceEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc
Confidence            555665555  666666555444331 2234589999998877665432  2566676 566666564

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=6.5e-09  Score=96.37  Aligned_cols=224  Identities=11%  Similarity=0.104  Sum_probs=140.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecC------CceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~------~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      .+.|-..|+.+.|.+-.-.|++++.++ +.+|+++.      ...+-.++|+ |.++|-++++...+..+..++      
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg------  363 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG------  363 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec------
Confidence            356777899999999999999999977 56999832      1122233443 899999999988887777666      


Q ss_pred             CCCCcEEEEeCC------CCc----EEEEEee-CCceeEEEEeC--CeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCC-
Q 020784          153 YPLNKVMIWDDH------QSR----CIGELSF-RSEVRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIETIANPK-  217 (321)
Q Consensus       153 ~~d~~v~iWD~~------~~~----~~~~~~~-~~~v~~v~~~~--~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~-  217 (321)
                       -||+|+.|++-      ..-    ....+.+ ...|..+.++.  ++++.| .|+++|.|+...... .+|....... 
T Consensus       364 -~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  364 -IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             -cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence             78999999542      111    1122333 34677777764  567777 468999999876655 3443322111 


Q ss_pred             -ceEEE-eeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeec-------cccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          218 -GLCAV-SQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       218 -~~~~~-s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~-------H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                       ..+++ +..+  ....+ ...-|.--++++.... +..+..       -...+.-|..+|.+.+..++-+|++ ||++|
T Consensus       442 Plsvd~~ss~~--a~~~~-s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~d  517 (577)
T KOG0642|consen  442 PLSVDRTSSRP--AHSLA-SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFD  517 (577)
T ss_pred             cceEeeccchh--Hhhhh-hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccc
Confidence             12222 2221  11111 1111222223333222 222211       1234778889999999999999999 99999


Q ss_pred             cCCCcEEEEEeCCCccee--EEEeecCceEEE
Q 020784          288 TLDGTLLQEECCPSISAQ--SGLWLSSAWLRV  317 (321)
Q Consensus       288 ~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~  317 (321)
                      ..+|+.++... .+....  +++.++|-||+.
T Consensus       518 n~~~~~l~s~~-a~~~svtslai~~ng~~l~s  548 (577)
T KOG0642|consen  518 NKTGKILHSMV-AHKDSVTSLAIDPNGPYLMS  548 (577)
T ss_pred             ccccccchhee-eccceecceeecCCCceEEe
Confidence            99999998874 344333  355677777654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.01  E-value=6.9e-08  Score=83.20  Aligned_cols=192  Identities=8%  Similarity=0.040  Sum_probs=133.4

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCcE-EEEEecCCce--eEEeeeecCCceEEEEEecCC-CeEEEEeCCCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQ-DHGCFAAGTDHGF-RIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLN  156 (321)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasg~~~gv-~vw~~~~~~~--~~~~~~~~~~~v~~v~~~~~~-~~~~~~sg~~~~~~~d~  156 (321)
                      ..+.+++++..|+. |-++|.+.+-|+. .|||++++..  +.+.-..|++.|..++|...+ +.+|.++       .||
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg-------aDG  219 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG-------ADG  219 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec-------CCC
Confidence            44557999999997 5577778887774 4999998622  222222379999999997744 4556666       579


Q ss_pred             cEEEEeCCCCcEEEEEee----CCceeEEEEeCCe---EEEE--ECCEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCC
Q 020784          157 KVMIWDDHQSRCIGELSF----RSEVRSVKLRRDR---IIVV--LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~----~~~v~~v~~~~~~---~~~~--~~~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      .||++|++..+-...+-.    +.....++|+++.   ++..  ....|.|.|++. ...+..+..|...+..+++.|+.
T Consensus       220 SvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  220 SVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS  299 (364)
T ss_pred             cEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence            999999987653322211    2356678887642   2222  246999999975 56678899999988888988876


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcce-------EEeeccccceeEEEECCC-CCEEEEEeCCCcEEEE
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRT-------KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRI  285 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~-------~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrI  285 (321)
                      . ..|+ +++.|-.+.|||+.....       ..+. -.++|+.|.|++. +..+|.+. +++ +.|
T Consensus       300 ~-~hic-taGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kk-lei  361 (364)
T KOG0290|consen  300 S-SHIC-TAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKK-LEI  361 (364)
T ss_pred             C-ceee-ecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCe-eeE
Confidence            4 3454 588899999999875332       2233 5678999999954 67888776 544 444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.00  E-value=5.1e-10  Score=107.74  Aligned_cols=199  Identities=15%  Similarity=0.183  Sum_probs=137.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      -++|.+.|+.++.+.+..++|+++.|. |++|.+..+..+..... |.|.|..+++++..    ..+       .||+++
T Consensus       228 ~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg-htgavtaiafsP~~----sss-------~dgt~~  295 (1113)
T KOG0644|consen  228 CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG-HTGAVTAIAFSPRA----SSS-------DDGTCR  295 (1113)
T ss_pred             CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc-cccceeeeccCccc----cCC-------CCCceE
Confidence            378999999999999999999999876 67999988776544443 78889988887754    222       689999


Q ss_pred             EEeCC-C-------------CcEEEEEeeC--------------C---ceeEEEEeCCeEEEE--------------ECC
Q 020784          160 IWDDH-Q-------------SRCIGELSFR--------------S---EVRSVKLRRDRIIVV--------------LEQ  194 (321)
Q Consensus       160 iWD~~-~-------------~~~~~~~~~~--------------~---~v~~v~~~~~~~~~~--------------~~~  194 (321)
                      +||.+ .             +..+..+.+.              .   ..-.+.++...+..+              .+-
T Consensus       296 ~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~  375 (1113)
T KOG0644|consen  296 IWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDH  375 (1113)
T ss_pred             eccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeee
Confidence            99976 1             1111111100              0   011111221111111              224


Q ss_pred             EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEE
Q 020784          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLL  273 (321)
Q Consensus       195 ~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~l  273 (321)
                      .+++|++.++++++.+.+|..+..++.+++-.  ..++.+.+.||...|||...+. ++.+..-...+...+||+||+.+
T Consensus       376 ~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn--~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~  453 (1113)
T KOG0644|consen  376 RLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN--PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSI  453 (1113)
T ss_pred             EeeeeecccchhhhhhcccccceeeeeecCCC--cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceE
Confidence            78999999999999999999998888887753  6677788999999999986543 44333335667788999999998


Q ss_pred             EEEeCCCcEEEEEEcCCCcEE
Q 020784          274 ATSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       274 as~S~Dgt~IrIWd~~tg~~i  294 (321)
                      +..-.-|. +.|+.+..++-.
T Consensus       454 ~lsd~hgq-l~i~g~gqs~s~  473 (1113)
T KOG0644|consen  454 ALSDDHGQ-LYILGTGQSKSQ  473 (1113)
T ss_pred             ecCCCCCc-eEEeccCCCccc
Confidence            85544444 999887766544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=2.2e-08  Score=88.56  Aligned_cols=181  Identities=12%  Similarity=0.098  Sum_probs=122.2

Q ss_pred             CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC--CceeEEEEeC---CeEEEEECCEEEEEEc
Q 020784          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRR---DRIIVVLEQKIFVYNF  201 (321)
Q Consensus       127 ~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~---~~~~~~~~~~I~iwd~  201 (321)
                      +-.+..++|+.+-..++++.       .|..|||+|-.. .+...++..  ..|++++|-+   ..++++....|+||..
T Consensus        98 ~~dlr~~aWhqH~~~fava~-------nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~  169 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVAT-------NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSD  169 (445)
T ss_pred             hcceeeEeechhhhhhhhhc-------cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEc
Confidence            34567788887766666666       788999999776 444444443  4799999976   4688888889999987


Q ss_pred             CC-cEEE-----------EEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEee-ccccceeEEEECC
Q 020784          202 AD-LKLL-----------HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQ  268 (321)
Q Consensus       202 ~~-~~~~-----------~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~-~H~~~V~~vafsp  268 (321)
                      .. ...-           +.++. .+-..+..+..+.|+..++.+.-.|..|.|||..++...-+. .--+.++-+.|||
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~-pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP  248 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQD-PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP  248 (445)
T ss_pred             CcccccccccccccccchhheeC-CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence            32 1111           11222 122345556666677888865666778999999877655444 4556789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEc-CCCcEEEEEeCCCccee-EEEeecCceEEEe
Q 020784          269 DGQLLATSSTKGTLVRIFNT-LDGTLLQEECCPSISAQ-SGLWLSSAWLRVL  318 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~-~tg~~i~~~~~g~~~~~-~~~s~d~~~la~~  318 (321)
                      ||.+|..+.-|+. .++|+. ++-.+.+.. .+..... .+.+++|++|..+
T Consensus       249 dgd~lfaAt~dav-frlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  249 DGDVLFAATCDAV-FRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             CCCEEEEecccce-eeeehhcccceeccee-ccCCceeeeeecCCCCEEEEE
Confidence            9999999999999 999954 443333333 2333333 3667888887553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=5.1e-07  Score=84.06  Aligned_cols=100  Identities=10%  Similarity=0.091  Sum_probs=70.5

Q ss_pred             CCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCc
Q 020784          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGT  292 (321)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~D---gt~IrIWd~~tg~  292 (321)
                      ++..+.+++++...-++ -|-.--.|.|+|+....+..|  -.++=+++-|+|.|++++-++.+   |. |-|||+.+.+
T Consensus       272 PVhdv~W~~s~~EF~Vv-yGfMPAkvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K  347 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVV-YGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRK  347 (566)
T ss_pred             CceEEEECCCCCEEEEE-EecccceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchh
Confidence            44444444443222233 366666777777665554443  45666899999999999998875   57 9999999999


Q ss_pred             EEEEEeCCCcceeEEEeecCceEEEeec
Q 020784          293 LLQEECCPSISAQSGLWLSSAWLRVLRT  320 (321)
Q Consensus       293 ~i~~~~~g~~~~~~~~s~d~~~la~~~~  320 (321)
                      ++.++.. .+....-.++||+|+.+|+|
T Consensus       348 ~i~~~~a-~~tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  348 LIAKFKA-ANTTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             hcccccc-CCceEEEEcCCCcEEEEEec
Confidence            9998853 44455688999999999876

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.99  E-value=1.4e-08  Score=88.34  Aligned_cols=181  Identities=17%  Similarity=0.120  Sum_probs=128.1

Q ss_pred             CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc---EEEEEe-eCCceeEEEEeCC--eEEEEE-CCEEEEE
Q 020784          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR---CIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVY  199 (321)
Q Consensus       127 ~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~---~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~I~iw  199 (321)
                      ..+|.+.++..+...+|++.       +.+.|.|+.....+   ...+++ +...|+.|+|.++  ++..|. |..-++|
T Consensus        10 ~~pitchAwn~drt~iAv~~-------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSP-------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             cCceeeeeecCCCceEEecc-------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            46788999998888888887       55889999987665   334444 4568999999875  455554 5689999


Q ss_pred             Ec-CCcEEEEE--EeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-----EeeccccceeEEEECCCCC
Q 020784          200 NF-ADLKLLHQ--IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDGQ  271 (321)
Q Consensus       200 d~-~~~~~~~~--l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-----~l~~H~~~V~~vafspdg~  271 (321)
                      .. ..++=..+  +..+....  .++...|..+.+|+ |+....|.|+-++.+.--     .-+.|.+.|+++.|+|++-
T Consensus        83 ~~~~~~~WkptlvLlRiNrAA--t~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV  159 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAA--TCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV  159 (361)
T ss_pred             ccCCCCeeccceeEEEeccce--eeEeecCcCceEEe-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence            98 33332222  33333333  34444445577885 888888999776554322     4456788999999999999


Q ss_pred             EEEEEeCCCcEEEEEEcC------------------CCcEEEEE-eCCCcceeEEEeecCceEEEe
Q 020784          272 LLATSSTKGTLVRIFNTL------------------DGTLLQEE-CCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       272 ~las~S~Dgt~IrIWd~~------------------tg~~i~~~-~~g~~~~~~~~s~d~~~la~~  318 (321)
                      +||+||.|+. .|||..-                  =|+++.++ ..+.-...+.|+++|..||-.
T Consensus       160 LlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  160 LLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             eecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence            9999999999 9999642                  14455666 455556677889999888753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=3.2e-09  Score=96.93  Aligned_cols=79  Identities=18%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             EeccCCCCceEEEeeCC-CceEEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          210 IETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       210 l~~~~~~~~~~~~s~~~-d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      +++|.+...+-.+.+-+ ...+++ ||+.-|.|.||+..+..+ ..+.+-...|+||.=+|--..|||.+-|.. ||||-
T Consensus       387 YKGHrN~~TVKgVNFfGPrsEyVv-SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D-VKIWT  464 (559)
T KOG1334|consen  387 YKGHRNSRTVKGVNFFGPRSEYVV-SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD-VKIWT  464 (559)
T ss_pred             hcccccccccceeeeccCccceEE-ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccc-eeeec
Confidence            66776655555554433 335555 799999999999888774 456666669999999999999999999999 99997


Q ss_pred             cCC
Q 020784          288 TLD  290 (321)
Q Consensus       288 ~~t  290 (321)
                      -.+
T Consensus       465 P~~  467 (559)
T KOG1334|consen  465 PLT  467 (559)
T ss_pred             CCc
Confidence            644

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.98  E-value=2.3e-06  Score=78.20  Aligned_cols=218  Identities=9%  Similarity=-0.017  Sum_probs=134.2

Q ss_pred             EcCCCCEEEEEcC-----------CcEEEEEecCCceeEEeeeec------CCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        93 fs~dg~~lasg~~-----------~gv~vw~~~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ++|||+.|+.+..           +.|.|||..+.+.+.......      ...-....++++++.+.+..-.     .+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-----p~  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-----PS  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-----CC
Confidence            9999998765443           568899999998876665310      1112256778888888776532     36


Q ss_pred             CcEEEEeCCCCcEEEEEeeCCceeEEEEeC-CeEEEEECCEEEEEEcC-CcEE-EEEEe---ccCCCCceE-EEeeCCCc
Q 020784          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVVLEQKIFVYNFA-DLKL-LHQIE---TIANPKGLC-AVSQGVGS  228 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~I~iwd~~-~~~~-~~~l~---~~~~~~~~~-~~s~~~d~  228 (321)
                      +.|-+.|+.+++.+.++.......-+.... ...+.|.|+......+. +++. ..+..   ....++..- .+.+. |+
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg  206 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SG  206 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CC
Confidence            899999999999999888765333333333 23444556544443332 2221 11111   100111000 23332 34


Q ss_pred             eEEEeecCCCCcEEEEeeCCcceE------Eeec-------cccceeEEEECCCCCEEEEEeC---------C-CcEEEE
Q 020784          229 LVLVCPGLQKGQVRVEHYASKRTK------FIMA-------HDSRIACFALTQDGQLLATSST---------K-GTLVRI  285 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~~~------~l~~-------H~~~V~~vafspdg~~las~S~---------D-gt~IrI  285 (321)
                      ..+.+  +..|.|.+.|+......      .+..       ..+.+.-++++++|+++.....         . +. |-+
T Consensus       207 ~~~~v--s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~V  283 (352)
T TIGR02658       207 RLVWP--TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFV  283 (352)
T ss_pred             cEEEE--ecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEE
Confidence            44443  34499999885432211      1111       2233445999999887666431         1 35 999


Q ss_pred             EEcCCCcEEEEEeCCCcceeEEEeecCc-eEEEee
Q 020784          286 FNTLDGTLLQEECCPSISAQSGLWLSSA-WLRVLR  319 (321)
Q Consensus       286 Wd~~tg~~i~~~~~g~~~~~~~~s~d~~-~la~~~  319 (321)
                      +|+.+++.+.++..|.....+.+++|++ +|.++.
T Consensus       284 iD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       284 VDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             EECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence            9999999999999999988999999999 666543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=3.9e-07  Score=86.49  Aligned_cols=185  Identities=13%  Similarity=0.056  Sum_probs=116.5

Q ss_pred             CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE--CC--EEEEEE
Q 020784          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQ--KIFVYN  200 (321)
Q Consensus       127 ~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~--~I~iwd  200 (321)
                      ...+....|+++++.++.++...    ....|.+||+.+++..........+....|+++  .++...  ++  .|.+||
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~----~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQ----KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCC----CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            45667778999999998876331    124699999998876544344445556888876  344433  22  789999


Q ss_pred             cCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc--EEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeC
Q 020784          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~  278 (321)
                      +.+++.. .+..+........+++  |+..++++...+|.  |.+++..++....+..........+|+|||++|+..+.
T Consensus       274 ~~~~~~~-~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        274 LASRQLS-RVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             CCCCCeE-EcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc
Confidence            9877653 3443333233345554  55656554555554  55567666555444322334456789999999988765


Q ss_pred             CC--cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          279 KG--TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       279 Dg--t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ++  ..|.+||+.+++. +.+..........+++||++|+.++
T Consensus       351 ~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        351 QDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             cCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEE
Confidence            33  2378899999875 3343332223348899999998764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.96  E-value=2.1e-08  Score=88.11  Aligned_cols=202  Identities=14%  Similarity=0.237  Sum_probs=119.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCce-e--EEeeee-c------------CCceEEEEEecCCC--eEEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-I--FRRDFE-R------------GGGIGVVEMLFRCN--ILALV  145 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~-~--~~~~~~-~------------~~~v~~v~~~~~~~--~~~~~  145 (321)
                      ..-|.+|.|.-+|.+||+|..+| |.+|.-+.... +  +.-.++ |            ...|..+.|...++  .+.+.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            35789999999999999999877 66775432211 1  111111 1            22455667766554  34444


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEE---------------EEe----------------------eCCceeEEEEeCCeE
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIG---------------ELS----------------------FRSEVRSVKLRRDRI  188 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~---------------~~~----------------------~~~~v~~v~~~~~~~  188 (321)
                      +       +|++||+|.+.......               .++                      +.-.|.++.++.+.-
T Consensus       105 t-------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen  105 T-------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             c-------CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence            4       78999999875432111               000                      112455666666543


Q ss_pred             -EEEECC-EEEEEEcCC-cEEEEEEec--cC-----CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce-----E-
Q 020784          189 -IVVLEQ-KIFVYNFAD-LKLLHQIET--IA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----K-  252 (321)
Q Consensus       189 -~~~~~~-~I~iwd~~~-~~~~~~l~~--~~-----~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-----~-  252 (321)
                       ++..|+ .|.+|++.- .+....++-  +.     ..+...-|+|.. ++++++ .+..|+|++-|++...+     + 
T Consensus       178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~Y-SSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVY-SSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEE-ecCCCcEEEeechhhhhhcchhhh
Confidence             333344 899999853 222222221  11     012344566653 456776 67789999988763211     1 


Q ss_pred             -----------EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc-CCCcEEEEE
Q 020784          253 -----------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQEE  297 (321)
Q Consensus       253 -----------~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~-~tg~~i~~~  297 (321)
                                 -|..-.+.|..+.|+++|+|++|-.. -+ |+|||+ ...+.+.++
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt-vk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT-VKLWDLNMEAKPVETY  310 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce-eEEEeccccCCcceEE
Confidence                       13334567899999999999997753 45 999999 455555554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=4.1e-07  Score=86.77  Aligned_cols=185  Identities=12%  Similarity=0.049  Sum_probs=113.1

Q ss_pred             CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE--CC--EEEEEE
Q 020784          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQ--KIFVYN  200 (321)
Q Consensus       127 ~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--~~--~I~iwd  200 (321)
                      ...+....|+++++.++.++...    ....|.+||+.+++......+........|+++.  ++.+.  ++  .|.+||
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            45666778999999998876321    1246899999888754333344444567888763  44432  23  688889


Q ss_pred             cCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeCCcceEEeeccccceeEEEECCCCCEEEEEeC
Q 020784          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~  278 (321)
                      +.+++. +.+..+.......++++  |+..++++...+|...|  ++..++....+..+.......+|+|||++|+..+.
T Consensus       293 l~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        293 IATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             CCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            887764 33443333333445555  55666665555555444  66665555444333333456799999999887765


Q ss_pred             CC-c-EEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          279 KG-T-LVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       279 Dg-t-~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ++ . .|.++|+.+++.. .+..+.....-.+++||++|+.++
T Consensus       370 ~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~  411 (448)
T PRK04792        370 TNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYST  411 (448)
T ss_pred             cCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEE
Confidence            43 2 1445688888753 333322222337899999988754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.95  E-value=7.7e-09  Score=95.50  Aligned_cols=216  Identities=10%  Similarity=0.107  Sum_probs=126.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEE-ecCCceeEEeeeecCCceEEEE-E-------ecCCCeEEEEeCCCCCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYN-CDPFREIFRRDFERGGGIGVVE-M-------LFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~gv~vw~-~~~~~~~~~~~~~~~~~v~~v~-~-------~~~~~~~~~~sg~~~~~~~  154 (321)
                      |...|.||.|+.+...+.+++|+.+.+|+ +.+.... .... -+.-+.... .       -...+.+++++       +
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~-p~df~pt~~h~~~rs~~~g~~~d~~~i~s-------~   83 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKL-PDDFVPTDMHLGGRSSGGGKGSDTLLICS-------N   83 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhC-CcccCCccccccccccCCCCCcceEEEEc-------C
Confidence            44567899999988888888887776664 3222111 0000 000000000 0       01123455555       6


Q ss_pred             CCcEEEEeCCCCcEEEEEe-eCCceeEEEEeCCeE--E-EEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI--I-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~-~~~~v~~v~~~~~~~--~-~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ||.+.|-+-. ++.-..+. +.+.+.+-.|++++.  + ++.|+.|++|.-..+ +..++.....++.+.++.++.  .-
T Consensus        84 DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~~~~v~c~~W~p~S--~~  159 (737)
T KOG1524|consen   84 DGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQNEESIRCARWAPNS--NS  159 (737)
T ss_pred             CceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhcCceeEEEEECCCC--Cc
Confidence            7888777632 22222232 345677888998753  3 334679999985432 222333333445555655554  33


Q ss_pred             EEeecCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--E
Q 020784          231 LVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--G  307 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~  307 (321)
                      +++  ...|.+.|-.+... .+...++|++-|.++.|++...+++||++|-. .||||..-.-++..  ..++-.+.  +
T Consensus       160 vl~--c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~G~~Lf~S--~~~ey~ITSva  234 (737)
T KOG1524|consen  160 IVF--CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQGANLFTS--AAEEYAITSVA  234 (737)
T ss_pred             eEE--ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecccCcccccC--Chhccceeeee
Confidence            443  34467888655543 35688999999999999999999999999999 99999765444432  23444444  4


Q ss_pred             EeecCceEEEe
Q 020784          308 LWLSSAWLRVL  318 (321)
Q Consensus       308 ~s~d~~~la~~  318 (321)
                      +.+| +..|+.
T Consensus       235 ~npd-~~~~v~  244 (737)
T KOG1524|consen  235 FNPE-KDYLLW  244 (737)
T ss_pred             eccc-cceeee
Confidence            4455 444443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.94  E-value=4.5e-06  Score=76.97  Aligned_cols=204  Identities=14%  Similarity=0.177  Sum_probs=129.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CcEEEEEecCCceeEEe--eee-----------cCCceEEEEEecCCCeEEEEeCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRR--DFE-----------RGGGIGVVEMLFRCNILALVGGGPDP  151 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~~~--~~~-----------~~~~v~~v~~~~~~~~~~~~sg~~~~  151 (321)
                      .-..+++++||++|+++.-  +.+.+++++..+.+...  ...           ...+.-.+.+.++++.++++.-+.  
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~--  165 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA--  165 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT--
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC--
Confidence            4567999999999998864  44779999774332222  110           123345677889999888776542  


Q ss_pred             CCCCCcEEEEeCCCCc--EEE--EEee--CCceeEEEEeCC--eEEEEE--CCEEEEEEcC--Cc--EEEEEEeccC---
Q 020784          152 QYPLNKVMIWDDHQSR--CIG--ELSF--RSEVRSVKLRRD--RIIVVL--EQKIFVYNFA--DL--KLLHQIETIA---  214 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~--~~~--~~~~--~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~--~~--~~~~~l~~~~---  214 (321)
                          ..|.+|+++...  ...  .+..  ...+..+.|+++  .+++..  ++.|.+|++.  ++  +.++.+....   
T Consensus       166 ----D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  166 ----DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             ----TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             ----CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence                579999987654  322  2332  346888999986  566665  4699999987  43  3444444321   


Q ss_pred             C-CCceEEEeeCCCceEEEeecCCCCcEEEEeeC--CcceEE---eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          215 N-PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       215 ~-~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~---l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      . ......+..++|+.+|.++....+.|.++++.  ++.+..   +.......+.++|+|+|++|+.+..+...|.+|++
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            1 11344555556667776667777889998873  344432   33234458999999999999988765544999976


Q ss_pred             --CCCcEEEE
Q 020784          289 --LDGTLLQE  296 (321)
Q Consensus       289 --~tg~~i~~  296 (321)
                        ++|++...
T Consensus       322 d~~tG~l~~~  331 (345)
T PF10282_consen  322 DPDTGKLTPV  331 (345)
T ss_dssp             ETTTTEEEEE
T ss_pred             eCCCCcEEEe
Confidence              57876544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.93  E-value=4.1e-08  Score=94.33  Aligned_cols=203  Identities=11%  Similarity=0.049  Sum_probs=128.8

Q ss_pred             CcccCCCCCCeEEEEEcCCCCE--EEEEcC-CcEEEEEecCCceeE-------Ee----eeecCCceEEEEEec-CCCeE
Q 020784           78 ESTSSSPPPTLLHISFNQDHGC--FAAGTD-HGFRIYNCDPFREIF-------RR----DFERGGGIGVVEMLF-RCNIL  142 (321)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg~~--lasg~~-~gv~vw~~~~~~~~~-------~~----~~~~~~~v~~v~~~~-~~~~~  142 (321)
                      ......|..+|+.+.|..+-.-  |++++. ++|..|+++-.....       ..    +......+..+++.. +.+.+
T Consensus       284 s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F  363 (555)
T KOG1587|consen  284 SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF  363 (555)
T ss_pred             ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence            3445778899999999875432  555554 558899875432200       00    000123445556544 44555


Q ss_pred             EEEeCCCCCCCCCCcEEEEe---CCCCc-----EE-EEEeeCCceeEEEEeC---CeEEEEECCEEEEEEcC-CcEEEEE
Q 020784          143 ALVGGGPDPQYPLNKVMIWD---DHQSR-----CI-GELSFRSEVRSVKLRR---DRIIVVLEQKIFVYNFA-DLKLLHQ  209 (321)
Q Consensus       143 ~~~sg~~~~~~~d~~v~iWD---~~~~~-----~~-~~~~~~~~v~~v~~~~---~~~~~~~~~~I~iwd~~-~~~~~~~  209 (321)
                      ++++       ..|.|..=+   .....     .+ .-..+.+.|+++.+++   +.+.+++|-+++||... ....+..
T Consensus       364 iVGT-------e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~  436 (555)
T KOG1587|consen  364 IVGT-------EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS  436 (555)
T ss_pred             EEEc-------CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh
Confidence            5555       456666532   22221     11 1122456788888765   45666677899999986 5555555


Q ss_pred             EeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc---ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 020784          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (321)
Q Consensus       210 l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~---~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIW  286 (321)
                      +..+...+...++|+.-- .+++ +++.||.+.|||+...   +....+.+....+.+.|+++|+.||.|...|+ |+|+
T Consensus       437 ~~~~~~~v~~vaWSptrp-avF~-~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~  513 (555)
T KOG1587|consen  437 LDSSPDYVTDVAWSPTRP-AVFA-TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THIL  513 (555)
T ss_pred             hhhccceeeeeEEcCcCc-eEEE-EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEE
Confidence            555544444455555432 3344 5899999999998753   44566666777888889999999999999999 9999


Q ss_pred             EcCC
Q 020784          287 NTLD  290 (321)
Q Consensus       287 d~~t  290 (321)
                      ++..
T Consensus       514 ~l~~  517 (555)
T KOG1587|consen  514 KLSE  517 (555)
T ss_pred             EcCc
Confidence            9974

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=3.1e-09  Score=65.01  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=35.1

Q ss_pred             ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       250 ~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      .+.++.+|.+.|++|+|+|++.+|||||.|++ |+|||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            46789999999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.90  E-value=3.6e-07  Score=85.49  Aligned_cols=183  Identities=15%  Similarity=0.152  Sum_probs=122.8

Q ss_pred             CCCCEEEEEcCCc-EEEEEecCCceeEEe--eeecCCceEEEEEe--------------------cCCCeEEEEeCCCCC
Q 020784           95 QDHGCFAAGTDHG-FRIYNCDPFREIFRR--DFERGGGIGVVEML--------------------FRCNILALVGGGPDP  151 (321)
Q Consensus        95 ~dg~~lasg~~~g-v~vw~~~~~~~~~~~--~~~~~~~v~~v~~~--------------------~~~~~~~~~sg~~~~  151 (321)
                      +-+.+||....+| +|||+....+.....  ..+-.+...+..|.                    .+...+++..     
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt-----   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT-----   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec-----
Confidence            4567888887777 789998776542221  11012222222221                    0112223333     


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEee---CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeC
Q 020784          152 QYPLNKVMIWDDHQSRCIGELSF---RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~---~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~  225 (321)
                        ..|.|.++++..|+....+..   .+.|.++.++.+  .+..+. +..+..|+....+.++.++....-+...+++++
T Consensus        78 --~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   78 --PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             --CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence              348899999999998887763   346777777665  345554 459999999999999988876555555666654


Q ss_pred             CCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCC-----CCEEEEE-eCCCcEEEEEEcCC
Q 020784          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-----GQLLATS-STKGTLVRIFNTLD  290 (321)
Q Consensus       226 ~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspd-----g~~las~-S~Dgt~IrIWd~~t  290 (321)
                        +.++++ +  .+.|++||.+++. +.+|.+|.++|+++.|--+     |.+|.+. ..+.. |-+|-+..
T Consensus       156 --~~~l~~-a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~  221 (541)
T KOG4547|consen  156 --GKILLT-A--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK  221 (541)
T ss_pred             --CCEEEe-c--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence              577763 3  3689999999887 5689999999999999876     6666654 44555 78887664

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=5.2e-08  Score=90.79  Aligned_cols=179  Identities=15%  Similarity=0.145  Sum_probs=119.8

Q ss_pred             CCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC
Q 020784           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS  176 (321)
Q Consensus        97 g~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~  176 (321)
                      -.++.+|+..-|.=+|++.++.+..... ..+.+.+|.+...-.++++.+       .+|.|-.||.++...+..+....
T Consensus       146 cDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt-------~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  146 CDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGT-------EDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             ccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecc-------cCceEEEecchhhhhheeeeccc
Confidence            3455555555555567777765544443 246788887766555554444       56899999988877666665544


Q ss_pred             ceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeec
Q 020784          177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA  256 (321)
Q Consensus       177 ~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~  256 (321)
                      .|.+                             ..+......+.++.+..++..+++ |+..|.|.|+|+........+.
T Consensus       218 ~v~s-----------------------------~pg~~~~~svTal~F~d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kd  267 (703)
T KOG2321|consen  218 SVNS-----------------------------HPGGDAAPSVTALKFRDDGLHVAV-GTSTGSVLIYDLRASKPLLVKD  267 (703)
T ss_pred             ccCC-----------------------------CccccccCcceEEEecCCceeEEe-eccCCcEEEEEcccCCceeecc
Confidence            3321                             011112234566677767788886 9999999999999877666677


Q ss_pred             ccc--ceeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceE
Q 020784          257 HDS--RIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWL  315 (321)
Q Consensus       257 H~~--~V~~vafspdg--~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~l  315 (321)
                      |..  +|..+.|.+.+  ..++|  .|..++||||-.+|+......-..+...+++.+++-.+
T Consensus       268 h~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~  328 (703)
T KOG2321|consen  268 HGYELPIKKLDWQDTDQQNKVVS--MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMF  328 (703)
T ss_pred             cCCccceeeecccccCCCceEEe--cchHHhhhcccccCCceeeccccCCcCceeeecCCceE
Confidence            754  68889997763  45554  46767999999999998877655555556777766443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=3.4e-06  Score=79.96  Aligned_cols=206  Identities=11%  Similarity=0.023  Sum_probs=119.5

Q ss_pred             CCeEEEEEcCCCCEEE---EEcCCc---EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           86 PTLLHISFNQDHGCFA---AGTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        86 ~~V~~v~fs~dg~~la---sg~~~g---v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+.+=+|+|||+.++   +...++   |.+.+++.++......+  .+......|+++++.+++++....  ..+--+.
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~  260 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQ  260 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCC--CcceeEE
Confidence            3566779999997532   333332   55667776654333332  344455689999999988773211  0123355


Q ss_pred             EEeCCCC---cEEEEEeeC-CceeEEEEeCCe--EEEEEC--C--EEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCc
Q 020784          160 IWDDHQS---RCIGELSFR-SEVRSVKLRRDR--IIVVLE--Q--KIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       160 iWD~~~~---~~~~~~~~~-~~v~~v~~~~~~--~~~~~~--~--~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                      +||+..+   ......... .......|+++.  ++...+  +  .|.++++.. +...+.+...........+++  |+
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG  338 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DG  338 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC--CC
Confidence            5777653   222222222 234567888774  454443  4  455555532 223344443333333445555  55


Q ss_pred             eEEEeecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCC--CcEEEEEEcCCCcEEEEE
Q 020784          229 LVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK--GTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       229 ~~la~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~D--gt~IrIWd~~tg~~i~~~  297 (321)
                      ..|++.+..+|  .|.+||..++....+......+....|+|||++|+-.+.+  ...|.+||+.+++...-.
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            76766554444  5777998887777666555567889999999987754332  223888899888764433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.83  E-value=1.1e-07  Score=94.08  Aligned_cols=134  Identities=12%  Similarity=0.146  Sum_probs=96.6

Q ss_pred             EeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCC-ceEE-EeeCCCceEEEeecCCCCcEEEEeeCCcce-EEeeccc
Q 020784          183 LRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPK-GLCA-VSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHD  258 (321)
Q Consensus       183 ~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~-~~~~-~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H~  258 (321)
                      +...++++.+ .+.+-+||......+.++.....-. ..+. +-..++..+++ +|+.-|.|.+|+...... ..+.+|.
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~-~gsv~~~iivW~~~~dn~p~~l~GHe  175 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIA-SGSVFGEIIVWKPHEDNKPIRLKGHE  175 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEE-eccccccEEEEeccccCCcceecccC
Confidence            3444555554 5799999998877777666543221 1222 22233446777 599999999998874333 3589999


Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       259 ~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      +.|.++.|+-||+++||+|+|++ +|+|++.+++...-...||...+-...+...+|+++
T Consensus       176 G~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~  234 (967)
T KOG0974|consen  176 GSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITV  234 (967)
T ss_pred             CceEEEEEccCCcEEEEEecCcc-eeeeecccccccCcccccccceeEEEEeccceeEEe
Confidence            99999999999999999999999 999999999887733457776666555555576654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=5.1e-07  Score=84.06  Aligned_cols=225  Identities=13%  Similarity=0.115  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC----CCCcEEEEeC
Q 020784           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY----PLNKVMIWDD  163 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~----~d~~v~iWD~  163 (321)
                      =+.+.|||-|+||++=-..||.+|-=.....+....   ...+..+++++..++|++-+..-....    ....++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~---Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY---HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc---CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            467999999999999999999999766655543333   246888999999999887764322111    3377999999


Q ss_pred             CCCcEEEEEeeC--C-cee-EEEEeC--CeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec--
Q 020784          164 HQSRCIGELSFR--S-EVR-SVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--  235 (321)
Q Consensus       164 ~~~~~~~~~~~~--~-~v~-~v~~~~--~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG--  235 (321)
                      .+|...+.|...  . .+. -+.|+.  +.++..+.+.|.||+..+..++-.-..  ...++-.|++.|..++||+=.  
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEccc
Confidence            999988877652  1 121 234554  345555778999999876544321110  112233333333334444300  


Q ss_pred             ----------------CC------------------CC-c-------------------EEEEeeCCcceE-Eeeccccc
Q 020784          236 ----------------LQ------------------KG-Q-------------------VRVEHYASKRTK-FIMAHDSR  260 (321)
Q Consensus       236 ----------------s~------------------dg-~-------------------V~i~d~~~~~~~-~l~~H~~~  260 (321)
                                      ..                  .| .                   +.|..+..+.+- ..-.-+..
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~  447 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES  447 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence                            00                  00 1                   111111111110 11123456


Q ss_pred             eeEEEECCCCCEEEEEeCC--CcEEEEEEcCC----CcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          261 IACFALTQDGQLLATSSTK--GTLVRIFNTLD----GTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       261 V~~vafspdg~~las~S~D--gt~IrIWd~~t----g~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      |...+|-|.|..||+-+..  .+.++++.+++    -+++.++.. .....+.+++-|+|+++|
T Consensus       448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva  510 (698)
T KOG2314|consen  448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVA  510 (698)
T ss_pred             eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEE
Confidence            7888999999998876532  22388998873    245666643 333455889999999886

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=2.9e-06  Score=80.40  Aligned_cols=183  Identities=11%  Similarity=0.068  Sum_probs=109.2

Q ss_pred             eEEEEEecCCCeEEE--EeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC--C----EEEEE
Q 020784          130 IGVVEMLFRCNILAL--VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE--Q----KIFVY  199 (321)
Q Consensus       130 v~~v~~~~~~~~~~~--~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~--~----~I~iw  199 (321)
                      ...=.|+++++.+++  ++...    ....|.+.|+..++......+........|+++.  ++...+  +    .+.+|
T Consensus       187 ~~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        187 SITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             cccceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            344478888876433  44321    1246888898887755544555566677888764  444442  1    34457


Q ss_pred             EcCC---cEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEee--C--CcceEEeeccccceeEEEECCCCCE
Q 020784          200 NFAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--A--SKRTKFIMAHDSRIACFALTQDGQL  272 (321)
Q Consensus       200 d~~~---~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~--~--~~~~~~l~~H~~~V~~vafspdg~~  272 (321)
                      ++..   ++..+............++  .+|+..|++....+|...||.+  .  .+....+..+...+...+|||||++
T Consensus       263 ~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        263 SLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             ecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence            7654   2322222222122223344  4566767765556676666543  2  2334556666677889999999999


Q ss_pred             EEEEeCCC--cEEEEEEcCCCcEEEEEeCCC-cceeEEEeecCceEEEee
Q 020784          273 LATSSTKG--TLVRIFNTLDGTLLQEECCPS-ISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       273 las~S~Dg--t~IrIWd~~tg~~i~~~~~g~-~~~~~~~s~d~~~la~~~  319 (321)
                      ||..+.++  ..|.+||+.+|+... +..+. ......+++||++|++..
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEE
Confidence            98776542  238999999998743 43332 223457889999988653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.76  E-value=3.7e-08  Score=91.08  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=73.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .++.|+..+|++||++||+-+.|| +||||.++.+.+....- --+...+|+|++|++++++.+       .|.-|.||.
T Consensus       289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGG-------EDDLVtVwS  360 (636)
T KOG2394|consen  289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKYIVTGG-------EDDLVTVWS  360 (636)
T ss_pred             ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcCCccEEEecC-------CcceEEEEE
Confidence            345889999999999999999988 78999988765432220 137899999999999988877       567899999


Q ss_pred             CCCCcEEEEEeeCC-ceeEEEEe
Q 020784          163 DHQSRCIGELSFRS-EVRSVKLR  184 (321)
Q Consensus       163 ~~~~~~~~~~~~~~-~v~~v~~~  184 (321)
                      +..++.+..-+.|. -|..|+|.
T Consensus       361 f~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             eccceEEEeccccccceeeEeec
Confidence            99999888766554 46667766

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.76  E-value=5.5e-08  Score=100.69  Aligned_cols=192  Identities=11%  Similarity=0.195  Sum_probs=130.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ..|+++.=+|...+-++|+.+| |++|....+..+..........+..+.++..++.+.++.       .||.+-+|-..
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d-------~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD-------GDGDLSLWQAS 2281 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec-------cCCceeecccC
Confidence            5788888888888888888877 779998777766554421224455556677788887776       46899999876


Q ss_pred             CCcEEEEEeeC-CceeEEEEeCCeEEEEE---C-CEEEEEEcC---CcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          165 QSRCIGELSFR-SEVRSVKLRRDRIIVVL---E-QKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~~~~~~~~---~-~~I~iwd~~---~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      . +.....+.+ .....+.|-...++.++   + +.+.+||..   ...+++  ..|.....+.++.|.  .+++. +|+
T Consensus      2282 p-k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~--~qlli-sgg 2355 (2439)
T KOG1064|consen 2282 P-KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK--HQLLI-SGG 2355 (2439)
T ss_pred             C-cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc--ceEEE-ecC
Confidence            3 222222222 23344444443333332   2 489999973   234444  556555556666554  47776 799


Q ss_pred             CCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          237 QKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      .+|.|++||...+++ +++++         +. ...+|++|+..|. |+||++..-.+++++...|
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCchhh
Confidence            999999999987653 45544         44 4678999999999 9999999998888886555

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.74  E-value=4.8e-06  Score=73.23  Aligned_cols=229  Identities=10%  Similarity=0.058  Sum_probs=139.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-Cc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC---------
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---------  151 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~-~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~---------  151 (321)
                      ...+.+.+++|||||+.|..-++ +- +-||.+.+.+..+...-  +..+..+++.+++...++++-.+..         
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~  166 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK  166 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence            34468999999999998887777 43 56999988776554432  5567888888899888877654320         


Q ss_pred             --------------------CCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeC-C-eEEEEE-CCEEEEEEcCCcEEE-
Q 020784          152 --------------------QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-D-RIIVVL-EQKIFVYNFADLKLL-  207 (321)
Q Consensus       152 --------------------~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~-~~~~~~-~~~I~iwd~~~~~~~-  207 (321)
                                          .=+++-+.|||.--.-.+...+..-.+..++|++ + .+++++ |+.+|+.|--+.+.+ 
T Consensus       167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence                                1123558888843222222233334566777776 3 334443 345555442211111 


Q ss_pred             -----------------------------------------------------------EEEec---cCC---CCceEEE
Q 020784          208 -----------------------------------------------------------HQIET---IAN---PKGLCAV  222 (321)
Q Consensus       208 -----------------------------------------------------------~~l~~---~~~---~~~~~~~  222 (321)
                                                                                 ++++.   ..+   .++..+|
T Consensus       247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf  326 (447)
T KOG4497|consen  247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF  326 (447)
T ss_pred             hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence                                                                       11110   011   1224455


Q ss_pred             eeCCCceEEEeecCCCC---cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          223 SQGVGSLVLVCPGLQKG---QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg---~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      +.  |..++|.  ..|+   .+-+||++...+...-....+|+...|+|....|+.+-..-. +.+|...--.++..-..
T Consensus       327 s~--Ds~y~aT--rnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr-LY~W~psg~~~V~vP~~  401 (447)
T KOG4497|consen  327 SC--DSTYAAT--RNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR-LYFWAPSGPRVVGVPKK  401 (447)
T ss_pred             cC--CceEEee--ecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce-EEEEcCCCceEEecCCC
Confidence            54  5577774  3333   355599988887766667889999999999888877754444 88887765555554445


Q ss_pred             CCcceeEEEeecCceEEEe
Q 020784          300 PSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       300 g~~~~~~~~s~d~~~la~~  318 (321)
                      |.....+..--+|.+|+++
T Consensus       402 GF~i~~l~W~~~g~~i~l~  420 (447)
T KOG4497|consen  402 GFNIQKLQWLQPGEFIVLC  420 (447)
T ss_pred             CceeeeEEecCCCcEEEEE
Confidence            5444455666777777664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=5.4e-05  Score=67.50  Aligned_cols=225  Identities=17%  Similarity=0.171  Sum_probs=140.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC----CcEEEEEecC--CceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           85 PPTLLHISFNQDHGCFAAGTD----HGFRIYNCDP--FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~----~gv~vw~~~~--~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .+..+-++|+|++++|.++..    .+|.-|.++.  ++..+..... .+.+-..+++..++..++++.      +.-+.
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An------Y~~g~  112 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN------YHSGS  112 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE------ccCce
Confidence            346788999999999987754    3577888875  4433332211 233447788888888888776      34588


Q ss_pred             EEEEeCCC-CcE---EEEEeeCCc----------eeEEEEeCCe-EEEEE---CCEEEEEEcCCcEEEEEE----eccCC
Q 020784          158 VMIWDDHQ-SRC---IGELSFRSE----------VRSVKLRRDR-IIVVL---EQKIFVYNFADLKLLHQI----ETIAN  215 (321)
Q Consensus       158 v~iWD~~~-~~~---~~~~~~~~~----------v~~v~~~~~~-~~~~~---~~~I~iwd~~~~~~~~~l----~~~~~  215 (321)
                      |.++-++. |..   +..+.+.+.          +-...+.++. .+++.   .++|.+|++..+++...-    +....
T Consensus       113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G  192 (346)
T COG2706         113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG  192 (346)
T ss_pred             EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence            99998865 432   233333322          5666677765 33333   369999999877653322    22222


Q ss_pred             CCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeecc---------ccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAH---------DSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H---------~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                      + .-+.|++++.-.++  ..--+++|.+|.+..  +.+..++-|         ......|.+++||++|-.+-.--..|-
T Consensus       193 P-RHi~FHpn~k~aY~--v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         193 P-RHIVFHPNGKYAYL--VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             c-ceEEEcCCCcEEEE--EeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            2 23556665543344  468899999988775  344444333         345678899999999886643222488


Q ss_pred             EEEcCC--CcEE--EEE-eCCCcceeEEEeecCceEEEe
Q 020784          285 IFNTLD--GTLL--QEE-CCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       285 IWd~~t--g~~i--~~~-~~g~~~~~~~~s~d~~~la~~  318 (321)
                      +|.+..  |++-  ... ..|.......+++++++|.+|
T Consensus       270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            887753  4432  222 233335556888999999876

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.72  E-value=2.3e-06  Score=79.04  Aligned_cols=223  Identities=12%  Similarity=0.082  Sum_probs=130.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCC-------C-CCCCCc
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-------P-QYPLNK  157 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~-------~-~~~d~~  157 (321)
                      -++..++|||.|++|++....+|.+|.-.....+....   ...|..+.+++.+++|.+-+-...       . ...++.
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             cchhheeecCcchheehhhccceEEccccchhheeeee---cCCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence            47889999999999999999999999877766443333   356777788888887765432111       1 123468


Q ss_pred             EEEEeCCCCcEEEEEeeCCce---e-EEEEeCCeEEE--EECCEEEEEEcCC-cEE--EEEEeccCCCCce--EEEeeCC
Q 020784          158 VMIWDDHQSRCIGELSFRSEV---R-SVKLRRDRIIV--VLEQKIFVYNFAD-LKL--LHQIETIANPKGL--CAVSQGV  226 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v---~-~v~~~~~~~~~--~~~~~I~iwd~~~-~~~--~~~l~~~~~~~~~--~~~s~~~  226 (321)
                      +.+||..+|..+..+......   . -+.|+.+..++  ...+.++|+++.. ...  .+.+.    +.++  .++++.+
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr----~~gi~dFsisP~~  185 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR----PVGILDFSISPEG  185 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc----ccceeeEEecCCC
Confidence            999999999999887654422   2 24454433222  3556778887521 110  11111    1122  2223322


Q ss_pred             CceEEEe----ecCCCCcEEEE-----------------------------------------------------eeCCc
Q 020784          227 GSLVLVC----PGLQKGQVRVE-----------------------------------------------------HYASK  249 (321)
Q Consensus       227 d~~~la~----sGs~dg~V~i~-----------------------------------------------------d~~~~  249 (321)
                      ++..||+    -+...++++||                                                     +++.+
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~  265 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER  265 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence            2222222    11223333333                                                     22222


Q ss_pred             ceEEeeccccceeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          250 RTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       250 ~~~~l~~H~~~V~~vafspdg~~las~S--~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      .+.+...-.++|...+|.|.+..|++.+  ++-+ +.++|++.. +..-+. ......+.|++.++|+.+|
T Consensus       266 ~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~-~s~~~lr~N-l~~~~P-e~~rNT~~fsp~~r~il~a  333 (561)
T COG5354         266 SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS-VSVFDLRGN-LRFYFP-EQKRNTIFFSPHERYILFA  333 (561)
T ss_pred             ccceeccccccceeeeecccCCceeEEecccccc-eeecccccc-eEEecC-CcccccccccCcccEEEEe
Confidence            2223334578899999999999888876  6777 999999865 443332 2223344666777776553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.71  E-value=1.2e-08  Score=92.79  Aligned_cols=185  Identities=14%  Similarity=0.133  Sum_probs=132.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ..|+.+.|-.+.++||++-.+-+.|||-+-.+....+.   ...+..+++.+---+++.++       ..|-++--|+.+
T Consensus       171 Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~---~~~v~rLeFLPyHfLL~~~~-------~~G~L~Y~DVS~  240 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR---HIRVARLEFLPYHFLLVAAS-------EAGFLKYQDVST  240 (545)
T ss_pred             hhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh---cCchhhhcccchhheeeecc-------cCCceEEEeech
Confidence            37888888889999999988888899865443322222   35666777765444444444       458899999999


Q ss_pred             CcEEEEEeeC-CceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcE
Q 020784          166 SRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (321)
Q Consensus       166 ~~~~~~~~~~-~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V  241 (321)
                      |+.+..+... +.+..++.+|-.-++..   .++|.+|.....+.+.++..|..++..+++..  +|.++|+ .+.|..|
T Consensus       241 GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~--~G~YMaT-tG~Dr~~  317 (545)
T KOG1272|consen  241 GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR--GGRYMAT-TGLDRKV  317 (545)
T ss_pred             hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC--CCcEEee-cccccce
Confidence            9998887654 46666777775544443   36999999999898888999988887777755  5599995 7778899


Q ss_pred             EEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          242 RVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       242 ~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      +|||+..- .+.++.. ......++||..|- || +|.... |.||.
T Consensus       318 kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~-v~iw~  360 (545)
T KOG1272|consen  318 KIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDH-VQIWK  360 (545)
T ss_pred             eEeeeccccccceeec-CCCccccccccccc-ee-eecCCe-eeeeh
Confidence            99998753 3444433 45678899997664 44 444445 99993

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.70  E-value=5.3e-06  Score=71.07  Aligned_cols=201  Identities=13%  Similarity=0.075  Sum_probs=116.3

Q ss_pred             EEEEEcCC-----CCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCC-CeEEEEeCCCCCCCCCCcEEEE
Q 020784           89 LHISFNQD-----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        89 ~~v~fs~d-----g~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      +.+.|.|-     -.+||.|+..| +.+|.+.+........-.|..+|..+.-.-+. .-+.+++       .|+++|+.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s-------ndht~k~~  143 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS-------NDHTGKTM  143 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc-------CCcceeEE
Confidence            34566662     34788887755 77999886654333221123333332211111 1233444       68999999


Q ss_pred             eCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEEC-CEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          162 DDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~~-~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ++.-+......... -.+.++..+++  ..+++.+ ..|..|.+.. .+.+..+..........+.++......+|+ ++
T Consensus       144 ~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~  222 (344)
T KOG4532|consen  144 VVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VF  222 (344)
T ss_pred             EEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-Ee
Confidence            98765443333333 23556666654  4455555 5999999843 333323222222223334444445577774 99


Q ss_pred             CCCcEEEEeeCCcc-eE-----EeeccccceeEEEECCCCCE-EEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          237 QKGQVRVEHYASKR-TK-----FIMAHDSRIACFALTQDGQL-LATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~~-----~l~~H~~~V~~vafspdg~~-las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      .||++.|||.+... .+     +-..|++.++.+.|++-|.+ |.--|+.-..+.|-|+++++..+..
T Consensus       223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            99999999987532 11     33458999999999986642 2223443335999999998765543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.69  E-value=1.3e-05  Score=83.74  Aligned_cols=197  Identities=12%  Similarity=0.055  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCEEEEEcC--CcEEEEEecCCceeEEeeee------cCC---------ceEEEEEecCCCeEEEEeCCCC
Q 020784           88 LLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFE------RGG---------GIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~~~~~~------~~~---------~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      -..|+|++++..|.++..  +.|+++|..+..........      .++         .-..+++.++...+.++..   
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~---  702 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA---  702 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC---
Confidence            467889988876655543  45788887665432110000      000         0123566664444444432   


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeeC----------------CceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEEEE
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSFR----------------SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQI  210 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~----------------~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~~l  210 (321)
                         .++.|++||..++.... +...                ..+..++++++  .++++.  ++.|++||+.++......
T Consensus       703 ---~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        703 ---GQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             ---CCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence               35889999988765431 1110                13556888875  366664  369999999765432111


Q ss_pred             ecc-------------CCC------CceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeec--------------c
Q 020784          211 ETI-------------ANP------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--------------H  257 (321)
Q Consensus       211 ~~~-------------~~~------~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~--------------H  257 (321)
                      .+.             ...      ..-..+..++++.+++ +...++.|++||..++.+.++.+              +
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV-ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV-ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE-EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence            000             000      0012333344556555 37788999999987766554433              2


Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       258 ~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      -.....|+++++|+++++-+.+++ ||+||+.+++.
T Consensus       858 l~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~  892 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA  892 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence            236889999999999998888888 99999999876

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.69  E-value=3.5e-07  Score=81.99  Aligned_cols=84  Identities=23%  Similarity=0.277  Sum_probs=61.9

Q ss_pred             eccCCCCceEEEeeCCCceEEEeecCCCCcEEEEee-CCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       211 ~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~-~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      -+|-....-+++++++  .+++ +.+.|+.|+|-.+ ....+. -.-||+.-|..++.-++ +.|+|||-|++ ||+||+
T Consensus       148 lGhvSml~dVavS~D~--~~Ii-taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~  222 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDD--QFII-TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDI  222 (390)
T ss_pred             hhhhhhhheeeecCCC--CEEE-EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEec
Confidence            3444444455666654  6666 4899999999333 333343 45689999999999865 55899999999 999999


Q ss_pred             CCCcEEEEEeC
Q 020784          289 LDGTLLQEECC  299 (321)
Q Consensus       289 ~tg~~i~~~~~  299 (321)
                      .+|++++++..
T Consensus       223 ~sgk~L~t~dl  233 (390)
T KOG3914|consen  223 TSGKLLDTCDL  233 (390)
T ss_pred             ccCCcccccch
Confidence            99999988753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.69  E-value=2.1e-05  Score=68.15  Aligned_cols=200  Identities=15%  Similarity=0.169  Sum_probs=122.4

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEec-CCcee-EEeeee--cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           91 ISFNQDHGCFAAGTDHGFRIYNCD-PFREI-FRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        91 v~fs~dg~~lasg~~~gv~vw~~~-~~~~~-~~~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      ++.+.||++||.--+..+.|=... ....+ .+....  ..-.=+.++|++++.++|.+.       +.|+|+++|+...
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~-------S~G~i~vfdl~g~   75 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE-------STGTIRVFDLMGS   75 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-------CCCeEEEEecccc
Confidence            567889999998877666555432 22211 111110  112346789999999999988       4599999998653


Q ss_pred             cEEEEEe--------eCCceeEEEEeC---------CeEEEEECCEEEEEEc-----CCcEEEEEEeccC-CCCceEEEe
Q 020784          167 RCIGELS--------FRSEVRSVKLRR---------DRIIVVLEQKIFVYNF-----ADLKLLHQIETIA-NPKGLCAVS  223 (321)
Q Consensus       167 ~~~~~~~--------~~~~v~~v~~~~---------~~~~~~~~~~I~iwd~-----~~~~~~~~l~~~~-~~~~~~~~s  223 (321)
                      .+ ..+.        ....|..+.|-.         +.+++.-.+.++-|-+     ...+..++|.... .+.++.++.
T Consensus        76 ~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   76 EL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             ee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            32 2221        112355555532         2233335667776664     2345556665432 255677777


Q ss_pred             eCCCceEEEeecCCCCc----------EEEEeeCCc------------------------ceEE---e---eccccceeE
Q 020784          224 QGVGSLVLVCPGLQKGQ----------VRVEHYASK------------------------RTKF---I---MAHDSRIAC  263 (321)
Q Consensus       224 ~~~d~~~la~sGs~dg~----------V~i~d~~~~------------------------~~~~---l---~~H~~~V~~  263 (321)
                      .++..++|.+.|.....          +.-|.+-.+                        .+..   +   ..-...|..
T Consensus       155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK  234 (282)
T ss_pred             EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence            77777777776654332          222442110                        0001   1   123567999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       264 vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      |.+||||.+||+...+|. |-+|++.+.++.++...
T Consensus       235 mSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             EEECCCCCEEEEEEcCCe-EEEEecCcchhhcccch
Confidence            999999999999999999 99999999888877643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.65  E-value=9.2e-07  Score=87.60  Aligned_cols=187  Identities=11%  Similarity=0.085  Sum_probs=123.5

Q ss_pred             EEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCce---EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           91 ISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        91 v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v---~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      ..+..+.+.++.+.. +.+.+||............  ....   .++-+-...+.+.+.+|.     .-+.|.+|+....
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~--~er~~l~~~~~~g~s~~~~~i~~gs-----v~~~iivW~~~~d  165 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS--DERCTLYSSLIIGDSAEELYIASGS-----VFGEIIVWKPHED  165 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCC--CceEEEEeEEEEeccCcEEEEEecc-----ccccEEEEecccc
Confidence            445555556665554 5677888765544333221  1111   111222334444444443     3489999998632


Q ss_pred             -cEEEEEeeCCceeEEEEe--CCeEEEEECC-EEEEEEcCCcEEEE-EEeccCCCCceEEEeeCCCceEEEeecCCCCcE
Q 020784          167 -RCIGELSFRSEVRSVKLR--RDRIIVVLEQ-KIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (321)
Q Consensus       167 -~~~~~~~~~~~v~~v~~~--~~~~~~~~~~-~I~iwd~~~~~~~~-~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V  241 (321)
                       ..++..-+.+.+..+.++  ...++.++++ .+|+|++.+.+... +.-+|.  ..+......+.  .++ +++.|-+.
T Consensus       166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs--aRvw~~~~~~n--~i~-t~gedctc  240 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS--ARVWACCFLPN--RII-TVGEDCTC  240 (967)
T ss_pred             CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc--ceeEEEEeccc--eeE-EeccceEE
Confidence             233344456689999985  4456666765 99999998877655 333343  34444444432  454 58999999


Q ss_pred             EEEeeCCcceEEeecccc-ceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          242 RVEHYASKRTKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       242 ~i~d~~~~~~~~l~~H~~-~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      ++|+.....+.++++|.. .+..++..++....+|++.|++ +|+||+..
T Consensus       241 rvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~  289 (967)
T KOG0974|consen  241 RVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNG  289 (967)
T ss_pred             EEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhc
Confidence            999888777778999865 5999999999999999999999 99999875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=1.8e-08  Score=97.99  Aligned_cols=209  Identities=11%  Similarity=0.088  Sum_probs=141.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      +.+...-+|++|+-+.++|+.|+..| +++|++.++..+-+..+ |+..+..++-+.++..+.+.+..     +.--..+
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~-----S~PlsaL 1171 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSS-----SSPLSAL 1171 (1516)
T ss_pred             hccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccc-----cCchHHH
Confidence            44567889999999999999999966 88999999987766666 78899999988888887776632     2335789


Q ss_pred             EeCCC-CcEEEEEeeCCceeEEEEeCC--eEEEE-ECCEEEEEEcCCcEEEEEEeccC---C-CCceEEEeeCCCceEEE
Q 020784          161 WDDHQ-SRCIGELSFRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIA---N-PKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       161 WD~~~-~~~~~~~~~~~~v~~v~~~~~--~~~~~-~~~~I~iwd~~~~~~~~~l~~~~---~-~~~~~~~s~~~d~~~la  232 (321)
                      |++.. ++..+.+...+   ++.|++.  .-+++ ..+...+||++++..+.++-...   + ...+..|+|.  ..++.
T Consensus      1172 W~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~--D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDK---AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC--DTLIL 1246 (1516)
T ss_pred             hccccccCccccccccc---eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC--cceEe
Confidence            99863 44444554433   4556543  22333 34689999999988777743211   1 1234445554  34443


Q ss_pred             eecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeec
Q 020784          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLS  311 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d  311 (321)
                          .||.  +||..... ++.|...+..+. =.|+|+|.-++--|      -|||++|.+++++.. .-+.+.+.|...
T Consensus      1247 ----ndGv--LWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS------EIwD~RTF~lLh~VP-~Ldqc~VtFNst 1312 (1516)
T KOG1832|consen 1247 ----NDGV--LWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS------EIWDMRTFKLLHSVP-SLDQCAVTFNST 1312 (1516)
T ss_pred             ----eCce--eeeeccHHHHhhhhhheeccc-ccccCCCceEEeec------hhhhhHHHHHHhcCc-cccceEEEeccC
Confidence                4553  38876543 556665553333 35999999888654      389999999998874 455677777777


Q ss_pred             CceE
Q 020784          312 SAWL  315 (321)
Q Consensus       312 ~~~l  315 (321)
                      |..+
T Consensus      1313 G~Vm 1316 (1516)
T KOG1832|consen 1313 GDVM 1316 (1516)
T ss_pred             ccch
Confidence            7544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.61  E-value=9.5e-05  Score=67.71  Aligned_cols=199  Identities=13%  Similarity=0.053  Sum_probs=110.8

Q ss_pred             EEEEcCCCCEEEEEcC---CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC-CC
Q 020784           90 HISFNQDHGCFAAGTD---HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD-HQ  165 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~---~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~-~~  165 (321)
                      ..++++||++|.....   ..|-|.|+.+.+.+.....  .+...... ..+...++.+.        |+.....-. .+
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~-t~e~~~~~~~~--------Dg~~~~v~~d~~  177 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFP-TANDTFFMHCR--------DGSLAKVGYGTK  177 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEE-ecCCccEEEee--------cCceEEEEecCC
Confidence            6899999999997763   4477999999988766653  22222222 22222333333        222222211 12


Q ss_pred             CcE-EEEEee--C------CceeEEEEeCCeEEEEECCEEEEEEcCC-----cEEEEEEeccC-----CCCc--eEEEee
Q 020784          166 SRC-IGELSF--R------SEVRSVKLRRDRIIVVLEQKIFVYNFAD-----LKLLHQIETIA-----NPKG--LCAVSQ  224 (321)
Q Consensus       166 ~~~-~~~~~~--~------~~v~~v~~~~~~~~~~~~~~I~iwd~~~-----~~~~~~l~~~~-----~~~~--~~~~s~  224 (321)
                      |+. ......  .      ....-.......+++...++|.+.|+..     .+.+..+....     .+.+  .+++++
T Consensus       178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             CceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence            221 111111  1      1110011133456677779999999633     33333332111     1222  356665


Q ss_pred             CCCceEEEeecCC-------CCcEEEEeeCCcceE-EeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEEEcCCCcEE
Q 020784          225 GVGSLVLVCPGLQ-------KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       225 ~~d~~~la~sGs~-------dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~-~las~S-~Dgt~IrIWd~~tg~~i  294 (321)
                      ++...+++..+..       .+.|.++|..+.... .+. -...+..|+|+|||+ +|.+.. .++. |.|+|+.+++.+
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~-VsViD~~t~k~i  335 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKT-LYIFDAETGKEL  335 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCc-EEEEECcCCeEE
Confidence            5443343222211       247888888776644 333 245799999999999 777666 5777 999999999999


Q ss_pred             EEE-eCCC
Q 020784          295 QEE-CCPS  301 (321)
Q Consensus       295 ~~~-~~g~  301 (321)
                      +++ ..|.
T Consensus       336 ~~i~~vg~  343 (352)
T TIGR02658       336 SSVNQLGR  343 (352)
T ss_pred             eeeccCCC
Confidence            998 4443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.61  E-value=4.7e-07  Score=77.18  Aligned_cols=154  Identities=14%  Similarity=0.203  Sum_probs=98.3

Q ss_pred             CCCCCeEEEEEcC-CC-CE-EEEEcCCc-EEEEEecCCceeEEee---------eecCCceEEEEEecCCCeEEEEeCCC
Q 020784           83 SPPPTLLHISFNQ-DH-GC-FAAGTDHG-FRIYNCDPFREIFRRD---------FERGGGIGVVEMLFRCNILALVGGGP  149 (321)
Q Consensus        83 ~~~~~V~~v~fs~-dg-~~-lasg~~~g-v~vw~~~~~~~~~~~~---------~~~~~~v~~v~~~~~~~~~~~~sg~~  149 (321)
                      ...+.|.|..+.- ++ +. |++|-+.| |.+||+.+...+....         ..|.+++..+++....+.-+..+   
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg---  224 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG---  224 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC---
Confidence            4445787777443 33 33 44666666 7799998763222111         11567777777654333222222   


Q ss_pred             CCCCCCCcEEEEeCCC--CcE--EEEEeeCC-ceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEE
Q 020784          150 DPQYPLNKVMIWDDHQ--SRC--IGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (321)
Q Consensus       150 ~~~~~d~~v~iWD~~~--~~~--~~~~~~~~-~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~  221 (321)
                          .+..+..|.++.  +.+  ..++.... .|..+.+-++..+.++   |+.||+|+.++++.+..++.|...+..++
T Consensus       225 ----a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA  300 (323)
T KOG0322|consen  225 ----ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA  300 (323)
T ss_pred             ----ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence                457788888753  332  22333322 4666777776655554   67999999999999999999986655555


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEee
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHY  246 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~  246 (321)
                      |++  +..++| +++.|+.|-+|++
T Consensus       301 fsp--d~~lmA-aaskD~rISLWkL  322 (323)
T KOG0322|consen  301 FSP--DCELMA-AASKDARISLWKL  322 (323)
T ss_pred             eCC--CCchhh-hccCCceEEeeec
Confidence            554  568888 4999999999985

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.59  E-value=3.6e-05  Score=70.85  Aligned_cols=125  Identities=13%  Similarity=0.028  Sum_probs=91.9

Q ss_pred             CCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCc--EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        75 ~~~~~~~~~~~~~V~~v~fs~dg~~lasg~~~g--v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      ...+++...++..|+...+.-++.-++.|..+|  +-|||.++++......  .-+.|..+..++++..++++.      
T Consensus       349 ~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaN------  420 (668)
T COG4946         349 WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVAN------  420 (668)
T ss_pred             CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEc------
Confidence            344566677888999999999999999998866  6799999887543322  247788889999998887776      


Q ss_pred             CCCCcEEEEeCCCCcEEEEEe-eCCceeEEEEeCCeEEEEE-------CCEEEEEEcCCcEEEE
Q 020784          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLLH  208 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-------~~~I~iwd~~~~~~~~  208 (321)
                       +...+-+.|++++.....-+ ...-|+.+.||++.-.++-       ...|++||+.+++...
T Consensus       421 -dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         421 -DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             -CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence             44678888999887543222 2235888999987655542       2589999998877654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=4.3e-06  Score=74.90  Aligned_cols=223  Identities=14%  Similarity=0.140  Sum_probs=131.3

Q ss_pred             CCeEEEEEcCCCC--EEEEE-cCCcEEEEEecCCceeEEe----eeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           86 PTLLHISFNQDHG--CFAAG-TDHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        86 ~~V~~v~fs~dg~--~lasg-~~~gv~vw~~~~~~~~~~~----~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .+|..++|.-|++  .|... .++.+..+......+....    .. +.+.-.+.........+.++.       .+|.+
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~dg~Litc~-------~sG~l  127 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLADGTLITCV-------SSGNL  127 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhcCCEEEEEe-------cCCcE
Confidence            4788888887765  33333 3444555555444332221    00 111112222222233444444       35899


Q ss_pred             EEEeCCCCcE----EEEEeeCCceeEEEEeCC--eEEE-EE-C--CEEEEEEcCCcEEEEEEeccCC-------CCceE-
Q 020784          159 MIWDDHQSRC----IGELSFRSEVRSVKLRRD--RIIV-VL-E--QKIFVYNFADLKLLHQIETIAN-------PKGLC-  220 (321)
Q Consensus       159 ~iWD~~~~~~----~~~~~~~~~v~~v~~~~~--~~~~-~~-~--~~I~iwd~~~~~~~~~l~~~~~-------~~~~~-  220 (321)
                      .+|..+.+..    ...+.....+..+.-++.  .+++ ++ .  +.++|||+.+.+.+.+=+.-.+       ++-.. 
T Consensus       128 ~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  128 QVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            9999885542    223344444444444332  2222 22 2  4799999987754333222111       11122 


Q ss_pred             -EEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          221 -AVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       221 -~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                       .|-+..++..+| +++.-+.|++||.+.  +++..|.--..+|+++...|+|.++.+|-.-|. +..||+++++++...
T Consensus       208 i~Fl~g~~~~~fa-t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  208 IRFLEGSPNYKFA-TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGCG  285 (412)
T ss_pred             ceecCCCCCceEE-EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeeccc
Confidence             333332256666 478889999999875  346677778899999999999999999998888 999999999998774


Q ss_pred             eCCCcceeE--EEeecCceEEEe
Q 020784          298 CCPSISAQS--GLWLSSAWLRVL  318 (321)
Q Consensus       298 ~~g~~~~~~--~~s~d~~~la~~  318 (321)
                      ..|-...+.  ..-+..++||.+
T Consensus       286 ~kg~tGsirsih~hp~~~~las~  308 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASC  308 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEee
Confidence            455554444  334555688764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=3.8e-05  Score=72.60  Aligned_cols=192  Identities=12%  Similarity=0.044  Sum_probs=115.7

Q ss_pred             CeEEEEEcCCCCE-EEEEcCC----cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           87 TLLHISFNQDHGC-FAAGTDH----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        87 ~V~~v~fs~dg~~-lasg~~~----gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .+..-.|+|||+. ++..+..    .+.++|+.+++.......  .+......|+++++.+++.....    .+..|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--CCcEEeeEECCCCCEEEEEEccC----CCcEEEEE
Confidence            6778999999985 6543332    266778877765433332  45555678999998887765432    24678888


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeCC--eEEEEECC----EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQ----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~----~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      |+..+................|+++  .++..++.    .|.++|+.+++..+..... ..  ...+++  |+..++++.
T Consensus       263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~~--~~~~SP--DG~~Ia~~~  337 (419)
T PRK04043        263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-KN--NSSVST--YKNYIVYSS  337 (419)
T ss_pred             ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-Cc--CceECC--CCCEEEEEE
Confidence            9888765433233332334568775  45555542    7888899877653332221 11  224555  556666655


Q ss_pred             CCC------C--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCc--EEEEEEcCC
Q 020784          236 LQK------G--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLD  290 (321)
Q Consensus       236 s~d------g--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt--~IrIWd~~t  290 (321)
                      ...      +  .|.+.+..++....+.... ......|+|||+.++-.+.++.  .+.+.++..
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            433      2  5666777777666665542 3346889999998776655432  244455543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.57  E-value=9e-05  Score=64.06  Aligned_cols=185  Identities=16%  Similarity=0.147  Sum_probs=116.2

Q ss_pred             CCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEE-e
Q 020784           95 QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S  173 (321)
Q Consensus        95 ~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~-~  173 (321)
                      .++..++...++.+..||..+++.+....+  .+.+.... ...++.+++..       .++.|..+|..+|+.+... .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~~~v~v~~-------~~~~l~~~d~~tG~~~W~~~~  104 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDGGRVYVGT-------SDGSLYALDAKTGKVLWSIYL  104 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEETTEEEEEE-------TTSEEEEEETTTSCEEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eeccccccccc-------ceeeeEecccCCcceeeeecc
Confidence            444444444557788999999998877775  23222212 23345555555       3578999999999988774 3


Q ss_pred             eCC------ceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCc---------eEEEeeCCCceEEEeecCC
Q 020784          174 FRS------EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       174 ~~~------~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~---------~~~~s~~~d~~~la~sGs~  237 (321)
                      ...      ......+..+.++++. ++.|..+|..+|+.+...........         ....... ++.+++  ++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~--~~~  181 (238)
T PF13360_consen  105 TSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYV--SSG  181 (238)
T ss_dssp             -SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEE--ECC
T ss_pred             ccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEE--EcC
Confidence            221      2334556677888887 68999999999999988877432211         1222222 235555  355


Q ss_pred             CCc-EEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 020784          238 KGQ-VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (321)
Q Consensus       238 dg~-V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~  296 (321)
                      +|. +.+ |..++.... ......+..+ ...++..|+.++.|+. |..||+++|+.+-+
T Consensus       182 ~g~~~~~-d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~-l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  182 DGRVVAV-DLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGR-LYALDLKTGKVVWQ  237 (238)
T ss_dssp             TSSEEEE-ETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTE-EEEEETTTTEEEEE
T ss_pred             CCeEEEE-ECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCE-EEEEECCCCCEEeE
Confidence            564 555 887776442 2223333332 3466777777778999 99999999998643

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=2.1e-05  Score=73.56  Aligned_cols=204  Identities=16%  Similarity=0.202  Sum_probs=127.3

Q ss_pred             CCCCCCeEEEEEcCCCC--EEEE-----EcC-CcEEEEEecCCc---eeEEeeeecCCceEEEEEecCCCeE-EEEeCCC
Q 020784           82 SSPPPTLLHISFNQDHG--CFAA-----GTD-HGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGP  149 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~--~las-----g~~-~gv~vw~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~-~~~sg~~  149 (321)
                      ..|...|+...+||.+.  ++|+     ++. .-||||.+.-.+   .+-.+.| -...-..+.|...+..+ ++++..-
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-Fkadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-FKADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-cccceeEEEeccCCceEEEEEEEee
Confidence            45667899999999743  4543     222 348899875211   1112222 01222233444444433 3333221


Q ss_pred             CC---C-CCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC---CEEEEEEcCCcEEEEEEeccCCCCceE
Q 020784          150 DP---Q-YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE---QKIFVYNFADLKLLHQIETIANPKGLC  220 (321)
Q Consensus       150 ~~---~-~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~---~~I~iwd~~~~~~~~~l~~~~~~~~~~  220 (321)
                      |-   . |-..++.+.+.+...++..+.-.++|.++.|+++.  ++++-+   -++.|||++ ++.+..  ...++...+
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~d--f~egpRN~~  317 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFD--FPEGPRNTA  317 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEe--CCCCCccce
Confidence            10   0 12356888888755566666667899999999865  777765   499999987 444444  445567778


Q ss_pred             EEeeCCCceEEEeecC--CCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeC------CCcEEEEEEcCCC
Q 020784          221 AVSQGVGSLVLVCPGL--QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDG  291 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs--~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~------Dgt~IrIWd~~tg  291 (321)
                      -|++++  .++++.|.  -.|.+.|||..+.. +..+.+-.  -+-+.|+|||++|+|+..      |+. ++||+.. |
T Consensus       318 ~fnp~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhyt-G  391 (566)
T KOG2315|consen  318 FFNPHG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHYT-G  391 (566)
T ss_pred             EECCCC--CEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCC-eEEEEec-C
Confidence            888876  55555454  46899999987744 33554433  456789999999988754      788 9999975 5


Q ss_pred             cEEE
Q 020784          292 TLLQ  295 (321)
Q Consensus       292 ~~i~  295 (321)
                      .+++
T Consensus       392 ~~l~  395 (566)
T KOG2315|consen  392 SLLH  395 (566)
T ss_pred             ceee
Confidence            5544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.55  E-value=1.3e-06  Score=76.25  Aligned_cols=203  Identities=14%  Similarity=0.252  Sum_probs=115.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc-eeEE--eeee-c------------CCceEEEEEecCC--CeEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIFR--RDFE-R------------GGGIGVVEMLFRC--NILAL  144 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~-~~~~--~~~~-~------------~~~v~~v~~~~~~--~~~~~  144 (321)
                      ....|++|.|...|.|||+|..+| |.+|.-.... +.+.  -+|+ |            ...|..++|.-++  +.+.+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            345899999999999999998877 6677643322 1110  1111 1            2245566665443  34555


Q ss_pred             EeCCCCCCCCCCcEEEEeCCCCc--EEE-------------------------EEeeC-----------------CceeE
Q 020784          145 VGGGPDPQYPLNKVMIWDDHQSR--CIG-------------------------ELSFR-----------------SEVRS  180 (321)
Q Consensus       145 ~sg~~~~~~~d~~v~iWD~~~~~--~~~-------------------------~~~~~-----------------~~v~~  180 (321)
                      ++       +|++|++|.+....  .+.                         .+..+                 -.+.+
T Consensus       105 st-------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170         105 ST-------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             ec-------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence            55       68999999865431  000                         01111                 12445


Q ss_pred             EEEeCCeE-EEEECC-EEEEEEcCCcE-EE--EEEeccCC-----CCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc
Q 020784          181 VKLRRDRI-IVVLEQ-KIFVYNFADLK-LL--HQIETIAN-----PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (321)
Q Consensus       181 v~~~~~~~-~~~~~~-~I~iwd~~~~~-~~--~~l~~~~~-----~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~  250 (321)
                      +.++.+.- ++..+. .|.+|++.... ..  ..++.|.-     .+...-|++. .++.+.+ .+..|.|++-|++...
T Consensus       178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~-~cn~fmY-SsSkG~Ikl~DlRq~a  255 (460)
T COG5170         178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE-MCNVFMY-SSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh-HcceEEE-ecCCCcEEehhhhhhh
Confidence            55655442 333333 89999985321 11  12222211     1223445543 2345555 5678999998876321


Q ss_pred             e-----E------------EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEE
Q 020784          251 T-----K------------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEE  297 (321)
Q Consensus       251 ~-----~------------~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg-~~i~~~  297 (321)
                      +     +            -+.+..+.|..+.|+++|+++++-+.- + |+|||++.. .++.+.
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi  318 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTI  318 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceee
Confidence            1     1            123345678889999999999877543 5 999999864 345543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=3.9e-06  Score=75.25  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=107.0

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC------CcEEEEEe--eCCceeEEEEeCC-e-EEEEE-CC
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------SRCIGELS--FRSEVRSVKLRRD-R-IIVVL-EQ  194 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~------~~~~~~~~--~~~~v~~v~~~~~-~-~~~~~-~~  194 (321)
                      |.+.|..++++.++..++  +||     +|..+++|+++.      .+.+....  +.+.|.+++|+-. . ++.+. .+
T Consensus        55 H~GCiNAlqFS~N~~~L~--SGG-----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   55 HTGCINALQFSHNDRFLA--SGG-----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hccccceeeeccCCeEEe--ecC-----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            577888888877765554  444     579999999753      23333332  3368999999753 3 33332 36


Q ss_pred             EEEEEEcCCcEEEEEEeccCCC--CceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc----eEEeeccccceeEEEECC
Q 020784          195 KIFVYNFADLKLLHQIETIANP--KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQ  268 (321)
Q Consensus       195 ~I~iwd~~~~~~~~~l~~~~~~--~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~----~~~l~~H~~~V~~vafsp  268 (321)
                      +|..-|+.+.+.+..+....+.  +.-+..+|.  .++++ +.+.+|.|.+||....+    +.-+........++-|+|
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~-~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLI-VVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCC--CceEE-EEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            9999999998888777654433  333444554  35555 36889999999987654    222333456678999998


Q ss_pred             CC-CEEEEEeCCCcEEEEEEcCCCc
Q 020784          269 DG-QLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       269 dg-~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      .. .+|++.+..+. +.|||.+..+
T Consensus       205 ~~P~Li~~~~~~~G-~~~~D~R~~~  228 (609)
T KOG4227|consen  205 ETPALILVNSETGG-PNVFDRRMQA  228 (609)
T ss_pred             CCceeEEeccccCC-CCceeecccc
Confidence            74 68899999999 9999998643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=0.0002  Score=67.64  Aligned_cols=182  Identities=9%  Similarity=0.065  Sum_probs=111.4

Q ss_pred             CceEEEEEecCCCe-EEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC----CEEEEEE
Q 020784          128 GGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYN  200 (321)
Q Consensus       128 ~~v~~v~~~~~~~~-~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~----~~I~iwd  200 (321)
                      +....-.|+++++. ++..+-..    ....|.++|+.+++........+......|+++  +++...+    ..|.++|
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            34455688889885 55544221    135799999988876554455555666778876  3544432    4888999


Q ss_pred             cCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeC
Q 020784          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~  278 (321)
                      +.+++. +.+..+........+++  |+..|+++....|  .|.+.++.++....+......  ...|||||++||-.+.
T Consensus       264 l~~g~~-~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        264 TNTKTL-TQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CCCCcE-EEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEc
Confidence            877764 34443322222334555  4555555444445  455577766655433322212  2489999998887765


Q ss_pred             CC--------cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          279 KG--------TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       279 Dg--------t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ..        ..|.+.|+.+|.. +.+..+.....-.+++||++|+.++
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEE
Confidence            42        2378889888875 4454443333458899999998875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.50  E-value=5.7e-07  Score=83.64  Aligned_cols=153  Identities=13%  Similarity=0.207  Sum_probs=103.4

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee--CCceeEEEEeC---CeEEEE--ECCEEEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRR---DRIIVV--LEQKIFV  198 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~---~~~~~~--~~~~I~i  198 (321)
                      |.|.|.+++|..++.+++..+       +|-.+.|||.-..+.+..+..  ...|.++.|-|   +++++.  .|..|++
T Consensus        49 H~GCVN~LeWn~dG~lL~SGS-------DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLASGS-------DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             ccceecceeecCCCCEEeecC-------CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            788999999999998887666       678999999887777766643  34799999975   445444  4569999


Q ss_pred             EEcCCc----------EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc--eE---------Eeecc
Q 020784          199 YNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TK---------FIMAH  257 (321)
Q Consensus       199 wd~~~~----------~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~--~~---------~l~~H  257 (321)
                      ||+...          +..+.+..|...+.-++..+++.+.+.  +++.||+++-+|+...-  ..         .+...
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw--sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW--SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE--EecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            999741          111222223333334444444433333  57999999999987521  11         11222


Q ss_pred             ccceeEEEECCC-CCEEEEEeCCCcEEEEEEc
Q 020784          258 DSRIACFALTQD-GQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       258 ~~~V~~vafspd-g~~las~S~Dgt~IrIWd~  288 (321)
                      --...|+.++|. ..+||.|+.|-- .|++|.
T Consensus       200 lielk~ltisp~rp~~laVGgsdpf-arLYD~  230 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPF-ARLYDR  230 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCch-hhhhhh
Confidence            234678999986 568999998888 999994

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.49  E-value=0.00028  Score=63.05  Aligned_cols=203  Identities=12%  Similarity=0.177  Sum_probs=131.1

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Cc-EEEEEecCCceeEEe--eeecCCc----------eEEEEEecCCCeEEEEeCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRR--DFERGGG----------IGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~g-v~vw~~~~~~~~~~~--~~~~~~~----------v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      +-..|+++++|++|+++.- .+ |.++-++..+.+...  ...|.+.          +-...+.+++++++++.-|.   
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~---  166 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT---  166 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC---
Confidence            3388999999999999986 33 779987553322111  1112332          45566778888888887553   


Q ss_pred             CCCCcEEEEeCCCCcEEEE----EeeCCceeEEEEeCCe--EEEE--ECCEEEEEEcCCc----EEEEEEec----cCCC
Q 020784          153 YPLNKVMIWDDHQSRCIGE----LSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFADL----KLLHQIET----IANP  216 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~----~~~~~~v~~v~~~~~~--~~~~--~~~~I~iwd~~~~----~~~~~l~~----~~~~  216 (321)
                         ..|.+|++..|.....    ++-..-.+-+.||++.  .++.  .+++|.+|.....    +.++++..    ....
T Consensus       167 ---Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         167 ---DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             ---ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence               4699999998765432    2222356778999874  3333  4689999998652    33333322    1223


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeC--CcceEEe---eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC--
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--  289 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~l---~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~--  289 (321)
                      ....++...+||.+|.+|-.....|-++.+.  ++.+...   .-|....+...|++.|++|+.+.+|+..|.||.+.  
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            4566777777889888655444466665443  2333322   23444589999999999999999888779999775  


Q ss_pred             CCcEEE
Q 020784          290 DGTLLQ  295 (321)
Q Consensus       290 tg~~i~  295 (321)
                      ||++-.
T Consensus       324 TG~L~~  329 (346)
T COG2706         324 TGRLTL  329 (346)
T ss_pred             CceEEe
Confidence            566543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.49  E-value=0.00027  Score=74.17  Aligned_cols=216  Identities=10%  Similarity=0.051  Sum_probs=123.7

Q ss_pred             EEEEEcCC-CCEEEEEcC-CcEEEEEecCCceeEEeeeec----CC--------ceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           89 LHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFER----GG--------GIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        89 ~~v~fs~d-g~~lasg~~-~gv~vw~~~~~~~~~~~~~~~----~~--------~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      ..++++++ |+++++-.. +.|++||.+............    ++        .-..+++..+++.+.++..+      
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~------  644 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE------  644 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC------
Confidence            35788875 556666555 447788875432211111000    00        11344555566666555422      


Q ss_pred             CCcEEEEeCCCCcEEEEEee------------------CCceeEEEEeC--CeEEEEE--CCEEEEEEcCCcEEEEEEec
Q 020784          155 LNKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIET  212 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~------------------~~~v~~v~~~~--~~~~~~~--~~~I~iwd~~~~~~~~~l~~  212 (321)
                      .+.|+++|..++.. .++..                  -.....+++++  ..++++.  ++.|++||..++... .+.+
T Consensus       645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            37799999877653 23211                  01346788886  3455553  369999999776542 3321


Q ss_pred             cC---------------CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeec---------------------
Q 020784          213 IA---------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA---------------------  256 (321)
Q Consensus       213 ~~---------------~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~---------------------  256 (321)
                      ..               ..-.-+++++  ++..|.++...++.|++||..++....+.+                     
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            10               0001244444  444333346778899999987544321110                     


Q ss_pred             -cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC--------------CcceeEEEeecCceE
Q 020784          257 -HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP--------------SISAQSGLWLSSAWL  315 (321)
Q Consensus       257 -H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g--------------~~~~~~~~s~d~~~l  315 (321)
                       .-.....|+|+++|.++++-+.+++ |++||..++.+....-.|              .....++++.+|+.+
T Consensus       801 ~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly  873 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF  873 (1057)
T ss_pred             hhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence             1123579999999999998888888 999999988765433222              123456777888744

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.47  E-value=9.2e-06  Score=82.09  Aligned_cols=172  Identities=11%  Similarity=0.079  Sum_probs=105.7

Q ss_pred             cCCceEEEEEe-cCCCeEEEEeCCCCCCCCCCcEEEEeCCCC-----cEEEEEee---CCceeEE--EEeCCeEEEEE-C
Q 020784          126 RGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVMIWDDHQS-----RCIGELSF---RSEVRSV--KLRRDRIIVVL-E  193 (321)
Q Consensus       126 ~~~~v~~v~~~-~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~-----~~~~~~~~---~~~v~~v--~~~~~~~~~~~-~  193 (321)
                      |...+..++.+ .++.++++++       +||+||+||.++-     ....++..   .+.+.++  +.+.+.+++++ |
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS-------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGS-------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             ccccccceeecCCCCceEEEec-------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            34444444444 3446676666       7899999997542     12222332   2345554  45567787775 5


Q ss_pred             CEEEEEEcCCc-------EEEEEEeccCCCC--ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce-E--Eeeccccce
Q 020784          194 QKIFVYNFADL-------KLLHQIETIANPK--GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-K--FIMAHDSRI  261 (321)
Q Consensus       194 ~~I~iwd~~~~-------~~~~~l~~~~~~~--~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~--~l~~H~~~V  261 (321)
                      |.|++.++...       ...+....+..+.  ...++........+++ +...+.|.+||...... -  ....-.+.|
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcCccccce
Confidence            79999988541       1122222222211  1112222111124554 67778888899765432 2  333456789


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE
Q 020784          262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS  306 (321)
Q Consensus       262 ~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~  306 (321)
                      ++++.+|-+..|+.|...|. +-+||++=+..+...+..+...+.
T Consensus      1199 TSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P~~~~i~ 1242 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHPARAPIR 1242 (1431)
T ss_pred             eEEEecCCceEEEEecCCce-EEEEEeecCceeecccCcccCCcc
Confidence            99999999999999999999 889999998888887766664433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=5.1e-07  Score=84.04  Aligned_cols=164  Identities=15%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC-Cc------EEEEEe-eCCceeEEEEeCCe-EEEEECCEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SR------CIGELS-FRSEVRSVKLRRDR-IIVVLEQKI  196 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~-~~------~~~~~~-~~~~v~~v~~~~~~-~~~~~~~~I  196 (321)
                      |...|..+...-+.|.++.++       .|++||+|.++. +.      |..+.+ +..+|..+.|-.+. .++.+|+.|
T Consensus       734 H~~~iRai~AidNENSFiSAS-------kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~gi  806 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDNENSFISAS-------KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGI  806 (1034)
T ss_pred             cHHHhHHHHhcccccceeecc-------CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcc
Confidence            445566665556667777776       789999998753 22      333333 33478888887665 455578899


Q ss_pred             EEEEcCCcEEEEEEecc--CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEe-----eccccceeEEEECC
Q 020784          197 FVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI-----MAHDSRIACFALTQ  268 (321)
Q Consensus       197 ~iwd~~~~~~~~~l~~~--~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l-----~~H~~~V~~vafsp  268 (321)
                      .+||.--+.++......  ....+.+..-++-+..++.+-++...+|++.|.+... ...+     .+-+.-+++++.-+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            99998766666543221  1122222222332334554334888899998876543 2233     34456799999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      .|++||.+=..|+ |.+.|.++|+.+...
T Consensus       887 ~GN~lAa~LSnGc-i~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  887 KGNKLAAALSNGC-IAILDARNGKVINSW  914 (1034)
T ss_pred             CcchhhHHhcCCc-EEEEecCCCceeccC
Confidence            9999999988999 999999999998865

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.39  E-value=1.4e-05  Score=70.73  Aligned_cols=195  Identities=12%  Similarity=0.256  Sum_probs=115.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEec-CC-ceeEEee-eecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCD-PF-REIFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~-~~-~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      +.+++++.+..+.+.|.+|-+.| +-=+.+. .. +..+.+. ..|...+..+-+.-....+++.+       . .+-..
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~-------~-dk~~~  139 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTG-------K-DKQFA  139 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEec-------c-ccceE
Confidence            35899999999999999998866 4344331 11 1111111 11455555554444444444444       2 23334


Q ss_pred             EeC-CCCcEEEEEeeCCceeEEEEeCCeEEEE-ECCEEEEEEc--CCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDD-HQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~I~iwd~--~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      |-. +.++.+....+...-.++.+.-....++ ..++|.+-.+  ....++.++.+|...+  .+.++++...+|. ||.
T Consensus       140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~--~~l~Wd~~~~~Lf-Sg~  216 (404)
T KOG1409|consen  140 WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV--TCLKWDPGQRLLF-SGA  216 (404)
T ss_pred             EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccce--EEEEEcCCCcEEE-ecc
Confidence            543 2222222111111111111111111122 1234443333  4566777888776654  4455565556665 799


Q ss_pred             CCCcEEEEeeCCcc--eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          237 QKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       237 ~dg~V~i~d~~~~~--~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      .|..|.+||+..++  ...+.+|...|+.+..-+--+.|.++++||. |-+||+...
T Consensus       217 ~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~~  272 (404)
T KOG1409|consen  217 SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNVK  272 (404)
T ss_pred             ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccce
Confidence            99999999987654  5688999999999999888889999999999 999998754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.35  E-value=3.4e-05  Score=68.36  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=106.2

Q ss_pred             CCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEE----eeee---cCCceEEEEEecC-CCeEEE
Q 020784           73 LPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR----RDFE---RGGGIGVVEMLFR-CNILAL  144 (321)
Q Consensus        73 ~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~----~~~~---~~~~v~~v~~~~~-~~~~~~  144 (321)
                      ....+......|.--|++|+++.|+..+.++.+=.|-+|+++-....+.    +...   -...|...++++. ++.++-
T Consensus       152 ea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y  231 (433)
T KOG1354|consen  152 EASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY  231 (433)
T ss_pred             eeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE
Confidence            3334445557788899999999999999998877788999864332221    1110   0124556677664 444544


Q ss_pred             EeCCCCCCCCCCcEEEEeCCCCcEEE----EEee-------------CCceeEEEEeCCeEEEEE-C-CEEEEEEc-CCc
Q 020784          145 VGGGPDPQYPLNKVMIWDDHQSRCIG----ELSF-------------RSEVRSVKLRRDRIIVVL-E-QKIFVYNF-ADL  204 (321)
Q Consensus       145 ~sg~~~~~~~d~~v~iWD~~~~~~~~----~~~~-------------~~~v~~v~~~~~~~~~~~-~-~~I~iwd~-~~~  204 (321)
                      .+       +.|+||+-|++...+.-    .+..             -..|..+.|++.+-++.+ + -+|++||+ ...
T Consensus       232 SS-------SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~  304 (433)
T KOG1354|consen  232 SS-------SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA  304 (433)
T ss_pred             ec-------CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence            44       56999999998543211    1111             124667889887555544 4 49999999 566


Q ss_pred             EEEEEEeccCCC-------------CceEEEeeCCCceEEEeecCCCCcEEEEeeCC
Q 020784          205 KLLHQIETIANP-------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (321)
Q Consensus       205 ~~~~~l~~~~~~-------------~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~  248 (321)
                      +.+.+++.|..-             ..-.-++++++...+. +|+....+++++...
T Consensus       305 ~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~-TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  305 KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVM-TGSYNNVFRVFNLAR  360 (433)
T ss_pred             CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEe-cccccceEEEecCCC
Confidence            777777655321             1122344555656666 699999999988543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.33  E-value=1.9e-06  Score=73.45  Aligned_cols=94  Identities=16%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc--eEEeeccccceeEEEECCC-C
Q 020784          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQD-G  270 (321)
Q Consensus       194 ~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~--~~~l~~H~~~V~~vafspd-g  270 (321)
                      +..+.|+++..+.+..-......+...+.++..  +-+++.|+.||.+-+||.....  ...+++|+.+++.|-|+|. +
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q--q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQ--QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCccc--ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence            566667765433221111111123344444443  4344459999999999987654  3378999999999999975 6


Q ss_pred             CEEEEEeCCCcEEEEEEcCC
Q 020784          271 QLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       271 ~~las~S~Dgt~IrIWd~~t  290 (321)
                      ..|.|+|+||. +--||..+
T Consensus       237 ~~Lft~sedGs-lw~wdas~  255 (319)
T KOG4714|consen  237 EHLFTCSEDGS-LWHWDAST  255 (319)
T ss_pred             hheeEecCCCc-EEEEcCCC
Confidence            78999999999 77888775

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.32  E-value=0.00013  Score=75.17  Aligned_cols=223  Identities=15%  Similarity=0.115  Sum_probs=131.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEE----EecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw----~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..+.|.++.|-+|...|..+..+| |.+.    +.+....+..-..  +.+|.+++|+|+...+++++|.       ++|
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v--d~GI~a~~WSPD~Ella~vT~~-------~~l  144 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV--DSGILAASWSPDEELLALVTGE-------GNL  144 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE--cCcEEEEEECCCcCEEEEEeCC-------CEE
Confidence            346899999999998888888766 5666    5555555555555  7889999999999999999953       677


Q ss_pred             EEEeCCCCcEEEEEeeCC------ceeEEEEeCCeE-EEEECCEEEEEEcCCcEEEEEEecc--CCCCceEEEeeCCCce
Q 020784          159 MIWDDHQSRCIGELSFRS------EVRSVKLRRDRI-IVVLEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSL  229 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~------~v~~v~~~~~~~-~~~~~~~I~iwd~~~~~~~~~l~~~--~~~~~~~~~s~~~d~~  229 (321)
                      .+.. ++.+.+.+.....      ...+|-|..+.. +=+..++-.-=.+++...- +.+..  ......+.+++.+||.
T Consensus       145 ~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  145 LLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLSWDDGRVRISWRGDGE  222 (928)
T ss_pred             EEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC-ccccCccccCCCceEEEECCCCc
Confidence            7664 5556666554432      122333332210 0000000000000000000 00000  0223567899999999


Q ss_pred             EEEeecC--CC---CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCcEEEEEeCC--
Q 020784          230 VLVCPGL--QK---GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEECCP--  300 (321)
Q Consensus       230 ~la~sGs--~d---g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~--Dgt~IrIWd~~tg~~i~~~~~g--  300 (321)
                      ++|++.-  ..   ..++||+....-..+-..-.+--.+++|-|.|.++|+...  ++..|.+|. ++|-.-.+|.-.  
T Consensus       223 yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~  301 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC
Confidence            9998542  23   4788898763222233333334567899999999999765  333366676 455554554322  


Q ss_pred             ---CcceeEEEeecCceEEEe
Q 020784          301 ---SISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       301 ---~~~~~~~~s~d~~~la~~  318 (321)
                         .....+..+.||..||+.
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~  322 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVW  322 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEE
Confidence               223345777888999984

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.31  E-value=0.00046  Score=62.88  Aligned_cols=177  Identities=13%  Similarity=0.231  Sum_probs=109.1

Q ss_pred             EEEEEecCCceeEEeeeecCCceEEEEE-ecC------CCeEEEEeC---CCCCCCCCCcEEEEeCCCC-------cEEE
Q 020784          108 FRIYNCDPFREIFRRDFERGGGIGVVEM-LFR------CNILALVGG---GPDPQYPLNKVMIWDDHQS-------RCIG  170 (321)
Q Consensus       108 v~vw~~~~~~~~~~~~~~~~~~v~~v~~-~~~------~~~~~~~sg---~~~~~~~d~~v~iWD~~~~-------~~~~  170 (321)
                      |+|.|-.+.+.+....+..+..+.+++. .+.      ..+++++++   +.+.....|.|.++++.+.       +.+.
T Consensus         4 i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~   83 (321)
T PF03178_consen    4 IRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH   83 (321)
T ss_dssp             EEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE
T ss_pred             EEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE
Confidence            5677777776666666633333443332 333      234444433   1111112288999999884       2344


Q ss_pred             EEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcE-EEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeC
Q 020784          171 ELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYA  247 (321)
Q Consensus       171 ~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~-~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~  247 (321)
                      .....+.|++++--.+.++++.++.|++|++...+ ++.. .....+..+.++....  .++++ |+..+.|.+  |+..
T Consensus        84 ~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~--~~I~v-gD~~~sv~~~~~~~~  159 (321)
T PF03178_consen   84 STEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFK--NYILV-GDAMKSVSLLRYDEE  159 (321)
T ss_dssp             EEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEET--TEEEE-EESSSSEEEEEEETT
T ss_pred             EEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhh-heecceEEEEEEeccc--cEEEE-EEcccCEEEEEEEcc
Confidence            56677899999988888999999999999997766 4333 2233344666666654  35554 777667776  4543


Q ss_pred             CcceEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          248 SKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       248 ~~~~~~l~~--H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      ...+..+..  ....++++.|-+|+..++.+..+|. |.++...
T Consensus       160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~  202 (321)
T PF03178_consen  160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYN  202 (321)
T ss_dssp             TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-
T ss_pred             CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEEC
Confidence            444443332  4556899999877778888999999 9999887

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.29  E-value=0.00053  Score=63.80  Aligned_cols=160  Identities=8%  Similarity=0.050  Sum_probs=97.7

Q ss_pred             CCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCC--eEEEEE------------CCEEEEEEcCCcEEEEEEeccCCCCce
Q 020784          155 LNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL------------EQKIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~~------------~~~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                      +..++||.+-.+..+.+..+-. .-..+.|+..  .+++..            ...+.+++++...+ .....-..++.-
T Consensus       201 pa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhd  279 (561)
T COG5354         201 PAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHD  279 (561)
T ss_pred             CcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceecccccccee
Confidence            4566777666555444333211 2234555543  222211            14677888764332 222233455555


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC---cEEEEEEcCCCcEEE-
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQ-  295 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg---t~IrIWd~~tg~~i~-  295 (321)
                      .++.+..++.- +++|-.+-.+.++|+...  ..+..-...=+.+.|||.+++++.++.|+   . |-|||......+. 
T Consensus       280 f~W~p~S~~F~-vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~  355 (561)
T COG5354         280 FTWEPLSSRFA-VISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAG  355 (561)
T ss_pred             eeecccCCcee-EEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEE
Confidence            66666655443 446888888888887765  33444455567889999999999988764   6 8899998776655 


Q ss_pred             EEeCCCcceeEEEeecCceEEEeec
Q 020784          296 EECCPSISAQSGLWLSSAWLRVLRT  320 (321)
Q Consensus       296 ~~~~g~~~~~~~~s~d~~~la~~~~  320 (321)
                      .+ .+......-+++||+|+.++.|
T Consensus       356 ~~-~~~n~s~~~wspd~qF~~~~~t  379 (561)
T COG5354         356 AF-NGLNTSYCDWSPDGQFYDTDTT  379 (561)
T ss_pred             Ee-ecCCceEeeccCCceEEEecCC
Confidence            55 3454445567899999887654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.29  E-value=3.9e-05  Score=66.65  Aligned_cols=139  Identities=15%  Similarity=0.133  Sum_probs=87.0

Q ss_pred             CCCcEEEEeCCCCcEEEEEe---eCC-c---eeEEEEeC--CeEEEEE-CCEEEEEEcCCcEE--EEEEeccCCCCceEE
Q 020784          154 PLNKVMIWDDHQSRCIGELS---FRS-E---VRSVKLRR--DRIIVVL-EQKIFVYNFADLKL--LHQIETIANPKGLCA  221 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~---~~~-~---v~~v~~~~--~~~~~~~-~~~I~iwd~~~~~~--~~~l~~~~~~~~~~~  221 (321)
                      ..|.|.++..........+.   ... .   -.++.|..  ..+++.. .+.+.+-+...+.+  +++.+.|.-+.-.+.
T Consensus        93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~  172 (339)
T KOG0280|consen   93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK  172 (339)
T ss_pred             ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence            35777777654333222221   111 1   23344543  3444443 35666555443333  346677766666666


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCC-cc--eEEeeccccceeEEEEC-CCCCEEEEEeCCCcEEEEEEcCC-CcEEE
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KR--TKFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLD-GTLLQ  295 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~-~~--~~~l~~H~~~V~~vafs-pdg~~las~S~Dgt~IrIWd~~t-g~~i~  295 (321)
                      |+...  .-++++|+.||.+.-||.+- +.  -...+.|...|.+|.=+ |++.+++|||+|.. |++||+++ |+.+.
T Consensus       173 f~~~~--pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  173 FSDKE--PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLF  248 (339)
T ss_pred             cccCC--CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccc
Confidence            65543  34556899999999999872 22  12356799999999888 56899999999999 99999994 55544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.29  E-value=0.0014  Score=58.40  Aligned_cols=220  Identities=15%  Similarity=0.123  Sum_probs=125.5

Q ss_pred             eEEEEEcC-CCCEEEEEcCCc--EEEEEecCCceeEEeeeecC-CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           88 LLHISFNQ-DHGCFAAGTDHG--FRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        88 V~~v~fs~-dg~~lasg~~~g--v~vw~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ...++.+| ++..++.+..-|  ..+||+.+++......-..+ +=.....++.+++.+.+.-...+  ...|.|-|||.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--TGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--CCcEEEEEEEC
Confidence            34688899 556677777744  45999988876654432111 11234567889998887654332  13588999999


Q ss_pred             C-CCcEEEEEeeCC-ceeEEEEeCCe--EEEEEC-------------------CEEEEEEcCCcEEEEEEec--cCCCCc
Q 020784          164 H-QSRCIGELSFRS-EVRSVKLRRDR--IIVVLE-------------------QKIFVYNFADLKLLHQIET--IANPKG  218 (321)
Q Consensus       164 ~-~~~~~~~~~~~~-~v~~v~~~~~~--~~~~~~-------------------~~I~iwd~~~~~~~~~l~~--~~~~~~  218 (321)
                      . ..+.+.++...+ ....+.+.++.  ++++-.                   ..+-+.|..+++++.+...  ..+...
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            8 556666776544 34556666654  444421                   2355556667777666443  111122


Q ss_pred             eEEEeeCCCceEEEeecCCCC-------cEEEEeeCCcceEE-------eeccccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          219 LCAVSQGVGSLVLVCPGLQKG-------QVRVEHYASKRTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg-------~V~i~d~~~~~~~~-------l~~H~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                      +--+..++++..+.. .-..|       -|-+++... .+..       ...-.++|=+|+++.+|.++|..|=-|..+.
T Consensus       165 iRHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             eeeEEecCCCcEEEE-EecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            222233333332221 11111       111122111 1111       2334578999999999998877766666699


Q ss_pred             EEEcCCCcEEEEEeCCCcceeEEEeecC
Q 020784          285 IFNTLDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       285 IWd~~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                      +||..+|+++.... -.+.+.++...++
T Consensus       243 ~~d~~tg~~~~~~~-l~D~cGva~~~~~  269 (305)
T PF07433_consen  243 VWDAATGRLLGSVP-LPDACGVAPTDDG  269 (305)
T ss_pred             EEECCCCCEeeccc-cCceeeeeecCCc
Confidence            99999999987663 3444555433333

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.29  E-value=3.5e-06  Score=81.00  Aligned_cols=200  Identities=12%  Similarity=0.087  Sum_probs=134.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeec--CCceEEEEEecCCC--eEEEEeCCCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER--GGGIGVVEMLFRCN--ILALVGGGPDPQYPLN  156 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~--~~~v~~v~~~~~~~--~~~~~sg~~~~~~~d~  156 (321)
                      +.+-.+.+..+.++|-|+-+|.++..|..+-|++....-..+-. |  .-.+..+.|++...  +-++..       +..
T Consensus        20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVst-------s~q   91 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVST-------SNQ   91 (1081)
T ss_pred             EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEec-------Ccc
Confidence            33444578889999999999999999988888864432222221 1  22466677766543  223333       457


Q ss_pred             cEEEEeCCCCc-EEEEEeeC---CceeEEEEeCC---eEEEEE-CCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCC
Q 020784          157 KVMIWDDHQSR-CIGELSFR---SEVRSVKLRRD---RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVG  227 (321)
Q Consensus       157 ~v~iWD~~~~~-~~~~~~~~---~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d  227 (321)
                      +-.||++.... ...+|-.+   ..|+.+.|+++   .++.+. +..+..||++.- ..+..+.........+.++.. +
T Consensus        92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-~  170 (1081)
T KOG0309|consen   92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-D  170 (1081)
T ss_pred             hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-C
Confidence            78899986432 22233332   36888888764   455554 459999999763 445555554444555666554 3


Q ss_pred             ceEEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCc
Q 020784          228 SLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      ..++|  .+..+.|.+||...+  ++..+++|...|+.++|..- ...+.+++.||+ |+.||.....
T Consensus       171 p~vla--sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt  235 (1081)
T KOG0309|consen  171 PNVLA--SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKST  235 (1081)
T ss_pred             cchhh--hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccc
Confidence            36776  366668999998754  47899999999999999853 556889999999 9999987644

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.28  E-value=5.9e-06  Score=86.25  Aligned_cols=159  Identities=13%  Similarity=0.070  Sum_probs=109.0

Q ss_pred             CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC--CceeEEEEeCC--eEEEE-ECCEEEEEEcC
Q 020784          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRRD--RIIVV-LEQKIFVYNFA  202 (321)
Q Consensus       128 ~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~--~~~~~-~~~~I~iwd~~  202 (321)
                      ..+..+.-++...+.++.+       .||.|++|....++.+..+...  ..|+.+.|+.+  .+.++ .|+.+.+|...
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs-------~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGS-------QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             CceeeecCCCCCceEEecC-------CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            3444444455445555544       5799999999888877777654  45777777643  34443 67899999987


Q ss_pred             CcEEEEEEeccCCCCceEEEeeCCCceEEEeec--CCCCcEEEEeeCCcc--eEEeeccccceeEEEECCCCCEEEEEeC
Q 020784          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       203 ~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG--s~dg~V~i~d~~~~~--~~~l~~H~~~V~~vafspdg~~las~S~  278 (321)
                       .+.....+.|..  ...+|.+-+  .+++..|  +.++.+.+||.....  -.+-..|.+.++++++-|..++|.|||.
T Consensus      2282 -pk~~~s~qchnk--~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNK--ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             -CcceeccccCCc--cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence             333333344432  333333332  3344334  457799999965332  2244899999999999999999999999


Q ss_pred             CCcEEEEEEcCCCcEEEEEeC
Q 020784          279 KGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       279 Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      +|. |.|||++..++++++..
T Consensus      2357 ~G~-v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2357 KGE-VCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred             cCc-EEEeehHHHHHHHHhhh
Confidence            999 99999999999888754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.28  E-value=0.00043  Score=64.50  Aligned_cols=185  Identities=9%  Similarity=0.007  Sum_probs=106.9

Q ss_pred             EEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEE----EecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 020784           99 CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVE----MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (321)
Q Consensus        99 ~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~----~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~  173 (321)
                      .++.+.. ..+..||.++++.+.....  ........    ....++.+.+..       .++.+..+|.++|+.+.+..
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~--~~~~~~~~~~~sp~~~~~~v~~~~-------~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSR--VTPALTLRGSASPVIADGGVLVGF-------AGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEcc--CCCceeecCCCCCEEECCEEEEEC-------CCCEEEEEEccCCCEeeeec
Confidence            3444443 4477888888877665543  11111000    001123333333       45889999999988765443


Q ss_pred             eCCc-----------e-eEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          174 FRSE-----------V-RSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       174 ~~~~-----------v-~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      ....           + ....+..+.++++. ++.++.||..+++.+.......  .  ...... ++.+++  ++.+|.
T Consensus       218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~--~~p~~~-~~~vyv--~~~~G~  290 (377)
T TIGR03300       218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--Y--QGPAVD-DNRLYV--TDADGV  290 (377)
T ss_pred             cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--c--cCceEe-CCEEEE--ECCCCe
Confidence            2110           0 11223455666554 5799999999998877665321  1  111122 234444  578899


Q ss_pred             EEEEeeCCcceE-Eeecc-ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          241 VRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       241 V~i~d~~~~~~~-~l~~H-~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      +..+|..++... ..... .....+...  .+.+|..++.||. |.+||..+|+.+.++..+..
T Consensus       291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCCCEEEEEEcCCC
Confidence            999888766543 22111 112222222  3668888999999 99999999999988875543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.25  E-value=0.0003  Score=68.22  Aligned_cols=214  Identities=10%  Similarity=0.038  Sum_probs=127.1

Q ss_pred             EcCCCCEEEEEcC-Cc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEE
Q 020784           93 FNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (321)
Q Consensus        93 fs~dg~~lasg~~-~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~  170 (321)
                      +.+||+.+..-+. .+ +.+.|.++.+.......  ++.-..+++.+++..+.+.+-...   ..+++..-|..+...+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE---~G~tl~em~a~e~d~~v  274 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSE---EGVTLAEMMAAERDWVV  274 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcc---cCcceeeeccccCceEE
Confidence            4567766644443 33 44667777766555554  444556677777777766652111   12344444443333222


Q ss_pred             EEeeCCceeEEEEeCCeEEEEECCEEEEEEcCC-----cEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEe
Q 020784          171 ELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-----LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (321)
Q Consensus       171 ~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~-----~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d  245 (321)
                      .+.... +..+.-..+...+ .+++|.+.|..+     .+.+..+.....+.++ .+++  |+.+++++|..+.+|.|.|
T Consensus       275 vfni~~-iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV-~vSP--DGkylyVanklS~tVSVID  349 (635)
T PRK02888        275 VFNIAR-IEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGV-NTSP--DGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             EEchHH-HHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccce-EECC--CCCEEEEeCCCCCcEEEEE
Confidence            222211 0000111222333 467899999987     5677777776665543 4554  5687877899999999998


Q ss_pred             eCCcce-------------EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC----------CcEEEEEeCCCc
Q 020784          246 YASKRT-------------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEECCPSI  302 (321)
Q Consensus       246 ~~~~~~-------------~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t----------g~~i~~~~~g~~  302 (321)
                      +.....             .+..- .-.....+|.++|....|---|.. |-.||+.+          ...+..+...-+
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsq-v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~  427 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQ-IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ  427 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecce-eEEEehHHHHHHhccccCCcceecccCCCc
Confidence            765321             11111 233567889999998888888887 88999987          345565554444


Q ss_pred             ceeEEE------eecCceEEEe
Q 020784          303 SAQSGL------WLSSAWLRVL  318 (321)
Q Consensus       303 ~~~~~~------s~d~~~la~~  318 (321)
                      .-.+..      .+||+||.++
T Consensus       428 pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        428 PGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             cceeeecCCCcCCCCCCEEEEc
Confidence            444433      5899998764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.24  E-value=7.1e-06  Score=72.58  Aligned_cols=154  Identities=13%  Similarity=0.117  Sum_probs=107.4

Q ss_pred             eEEEEEcCC--CCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           88 LLHISFNQD--HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        88 V~~v~fs~d--g~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      -..|+|+-+  |-.+++|.+.+|-+-|++++-..   .|...+.|-...+...++++....       ..|.|...|++.
T Consensus       214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q---sf~sksDVfAlQf~~s~nLv~~Gc-------RngeI~~iDLR~  283 (425)
T KOG2695|consen  214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ---SFQSKSDVFALQFAGSDNLVFNGC-------RNGEIFVIDLRC  283 (425)
T ss_pred             chhhhhhhccceeeecccccceeEEEEeeccccc---ccccchhHHHHHhcccCCeeEecc-------cCCcEEEEEeee
Confidence            345577653  55677888899999999887542   221245566666655566665444       469999999876


Q ss_pred             C-----cEEEEEeeCCceeEEEE---eCCeEEEE-ECCEEEEEEcCCcEE---EEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          166 S-----RCIGELSFRSEVRSVKL---RRDRIIVV-LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       166 ~-----~~~~~~~~~~~v~~v~~---~~~~~~~~-~~~~I~iwd~~~~~~---~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +     .+...+-+++.|+++..   +...+.+. -+++|++||.+-.++   +.++++|.+...-.-+..+++..+++ 
T Consensus       284 rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~-  362 (425)
T KOG2695|consen  284 RNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF-  362 (425)
T ss_pred             cccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEE-
Confidence            4     35667778888888664   44444443 358999999987777   88899997766555556666655665 


Q ss_pred             ecCCCCcEEEEeeCCcceE
Q 020784          234 PGLQKGQVRVEHYASKRTK  252 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~  252 (321)
                      +++.|-..+||.+..+.+.
T Consensus       363 s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             EccCeeEEEEEecccCcee
Confidence            4888999999998876644

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.23  E-value=0.00029  Score=65.06  Aligned_cols=170  Identities=12%  Similarity=0.056  Sum_probs=113.0

Q ss_pred             EcC-CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCC-cEEEEeCCCCcEEE
Q 020784           93 FNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN-KVMIWDDHQSRCIG  170 (321)
Q Consensus        93 fs~-dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~-~v~iWD~~~~~~~~  170 (321)
                      |+. +|.++|.-+.+.+.|.+...+-.   ....+.+.|....+.-+++.++++.       .|+ .+-|+|.++++...
T Consensus       327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~---iqv~~~~~VrY~r~~~~~e~~vigt-------~dgD~l~iyd~~~~e~kr  396 (668)
T COG4946         327 FAVVNGDYIALVSRGKAFIMRPWDGYS---IQVGKKGGVRYRRIQVDPEGDVIGT-------NDGDKLGIYDKDGGEVKR  396 (668)
T ss_pred             hccCCCcEEEEEecCcEEEECCCCCee---EEcCCCCceEEEEEccCCcceEEec-------cCCceEEEEecCCceEEE
Confidence            443 68999988887765655433322   1221456687777777777666665       455 89999999887655


Q ss_pred             EEeeCCceeEEEEeCCe-EEEEE-CC-EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC----cEEE
Q 020784          171 ELSFRSEVRSVKLRRDR-IIVVL-EQ-KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG----QVRV  243 (321)
Q Consensus       171 ~~~~~~~v~~v~~~~~~-~~~~~-~~-~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg----~V~i  243 (321)
                      ....-+.|.++..+++. .+++. +. .|-++|+.+++..  +........+..|..+++..++|+ +.-+|    .|++
T Consensus       397 ~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~--~idkS~~~lItdf~~~~nsr~iAY-afP~gy~tq~Ikl  473 (668)
T COG4946         397 IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR--LIDKSEYGLITDFDWHPNSRWIAY-AFPEGYYTQSIKL  473 (668)
T ss_pred             eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee--EecccccceeEEEEEcCCceeEEE-ecCcceeeeeEEE
Confidence            44445688899998874 34444 43 7777788887652  222334456778888888899998 55555    6788


Q ss_pred             EeeCCcceEEeeccccceeEEEECCCCCEEEE
Q 020784          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLAT  275 (321)
Q Consensus       244 ~d~~~~~~~~l~~H~~~V~~vafspdg~~las  275 (321)
                      +|+.++.+....--.+.=.+=||.|||++|-=
T Consensus       474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence            99888765544434444456789999987644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.22  E-value=8.3e-06  Score=78.54  Aligned_cols=198  Identities=15%  Similarity=0.148  Sum_probs=120.2

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ++|...|+.+.|++.. ..||+++-+. +..||+.....-+.........-..|+|.. +++.++. +       ..+.|
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-s-------hg~~i  182 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-S-------HGNDI  182 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-c-------cCCce
Confidence            6788899999999876 5788888877 669999765433221111123345566654 4444443 3       34779


Q ss_pred             EEEeCCCCc-EEEEEeeCC-ceeEEEEeCC---e-EEEEECCEEEEEEcCCc--EEEEEEeccCCCCceEEEeeCCCceE
Q 020784          159 MIWDDHQSR-CIGELSFRS-EVRSVKLRRD---R-IIVVLEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       159 ~iWD~~~~~-~~~~~~~~~-~v~~v~~~~~---~-~~~~~~~~I~iwd~~~~--~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ++||.+.|. .+..++.+. .|..++|+..   . +....+++|++||..+-  +..+++.+ ..++-.-++-|-+++.+
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcceeccccccCceeE
Confidence            999998775 455555532 4666677653   2 23345689999998542  22222222 22333344555555544


Q ss_pred             EEeecCCCCcEEEEe---------eC--CcceEEeeccccceeEEEECC--------C--CCEEEEEeCCCcEEEEEEcC
Q 020784          231 LVCPGLQKGQVRVEH---------YA--SKRTKFIMAHDSRIACFALTQ--------D--GQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       231 la~sGs~dg~V~i~d---------~~--~~~~~~l~~H~~~V~~vafsp--------d--g~~las~S~Dgt~IrIWd~~  289 (321)
                      +.- --.+.+|.+.+         ..  ..++++|.||+..|...-|--        |  .-.|+|=|.|.+ +|+|-+.
T Consensus       262 ~mp-~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~-lrlWpI~  339 (1081)
T KOG0309|consen  262 IMP-MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT-LRLWPID  339 (1081)
T ss_pred             ecc-ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc-eEeeecc
Confidence            432 12222444332         21  235789999999886655532        2  236999999999 9999887


Q ss_pred             C
Q 020784          290 D  290 (321)
Q Consensus       290 t  290 (321)
                      +
T Consensus       340 ~  340 (1081)
T KOG0309|consen  340 S  340 (1081)
T ss_pred             H
Confidence            5

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.13  E-value=8.1e-05  Score=73.45  Aligned_cols=177  Identities=15%  Similarity=0.239  Sum_probs=121.4

Q ss_pred             CCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC
Q 020784           97 HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (321)
Q Consensus        97 g~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (321)
                      +..+..|+- +.+..+|+.+.++...... ..+++..+  ..+++.+.++.       ..|+|.+=|.++.+.++++..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~im--R~Nnr~lf~G~-------t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIM--RYNNRNLFCGD-------TRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeec-cCCceEEE--EecCcEEEeec-------ccceEEeecCCcCceeeeeecc
Confidence            444555544 5577888888776555544 12234433  33444444433       4699999999999999999866


Q ss_pred             C-ceeEEEEeCCeEEEEE----------CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEE
Q 020784          176 S-EVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (321)
Q Consensus       176 ~-~v~~v~~~~~~~~~~~----------~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~  244 (321)
                      . .+..+..+.+.++.|+          |.-|++||++.++.+.-+..+..+ ..+.|.|.-...+.+  .+..|.+.+-
T Consensus       217 s~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V--~S~sGq~q~v  293 (1118)
T KOG1275|consen  217 SGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV--TSQSGQFQFV  293 (1118)
T ss_pred             ccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE--Eecccceeec
Confidence            5 7888999988888774          346999999998887766655444 244555554434444  4667888886


Q ss_pred             e---eCCcce--EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          245 H---YASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       245 d---~~~~~~--~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      |   +.+-..  ..+..-.+.+..+++|++|..||-|-.+|. |.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence            6   333322  233344566999999999999999999999 99997

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.11  E-value=0.0047  Score=53.19  Aligned_cols=198  Identities=15%  Similarity=0.123  Sum_probs=111.8

Q ss_pred             cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeE-EEEeC
Q 020784          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-VKLRR  185 (321)
Q Consensus       107 gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~  185 (321)
                      .+..||..+++.+....+.....-........++.+.+.+       .++.|..||..+|+.+..+.....+.. .....
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~   76 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG   76 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence            3557777777766666541001111111223455565655       469999999999999888887654332 35566


Q ss_pred             CeEEEEE-CCEEEEEEcCCcEEEEEE-eccCCCC---ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-Eeecccc
Q 020784          186 DRIIVVL-EQKIFVYNFADLKLLHQI-ETIANPK---GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDS  259 (321)
Q Consensus       186 ~~~~~~~-~~~I~iwd~~~~~~~~~l-~~~~~~~---~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~  259 (321)
                      +.++++. ++.|+.+|..+++.+.++ .......   ........+ +.+++  +..+|.|...|..++.+. ....+..
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYV--GTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEE--EETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEE--EeccCcEEEEecCCCcEEEEeecCCC
Confidence            7777776 569999999999998885 4332111   122233332 23443  455788988888776643 3333321


Q ss_pred             c----------eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          260 R----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       260 ~----------V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      .          +..-....++ .+..++.++..+.+ |+.+|+.+-+..  ..........++..|.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~  218 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSLPSVDGGTLYVT  218 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECECEECCCTEEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCCceeeCCEEEEE
Confidence            1          1232333355 55556667754666 999999664332  111222245555555443

...

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.11  E-value=0.0027  Score=56.37  Aligned_cols=197  Identities=12%  Similarity=0.156  Sum_probs=120.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEe-------------eeecCCceEEEE--EecCCCeEEEEeCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVE--MLFRCNILALVGGGPDP  151 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~-------------~~~~~~~v~~v~--~~~~~~~~~~~sg~~~~  151 (321)
                      .|..+..-++-+.|++=+++.+.+++++........             ......++...+  -...+....++.     
T Consensus        37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-----  111 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-----  111 (275)
T ss_pred             eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-----
Confidence            499999999888888777888899998655433210             110122333333  122233333333     


Q ss_pred             CCCCCcEEEEeCCC----C-cEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCC----------
Q 020784          152 QYPLNKVMIWDDHQ----S-RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP----------  216 (321)
Q Consensus       152 ~~~d~~v~iWD~~~----~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~----------  216 (321)
                        ..++|.||....    . +...++.....+..++|.++.++++..+...+.|+.++....-+......          
T Consensus       112 --~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  112 --VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             --ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence              347899888754    2 56778888999999999999999999999999999876554333221111          


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~  295 (321)
                      .....+..+ ++.+|++  . |..-...+....... ..-.-...+.++++.  ..+|...+ ++. |-||++.+|++++
T Consensus       190 ~~~~~~~~~-~~e~Ll~--~-~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~-~~~-iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  190 KPLGIFQLS-DNEFLLC--Y-DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFS-SNS-IEVRSLETGELVQ  261 (275)
T ss_pred             CceEEEEeC-CceEEEE--e-cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEEC-CCE-EEEEECcCCcEEE
Confidence            112222222 3355553  2 222222343333322 111224467788884  45777665 566 9999999999999


Q ss_pred             EEe
Q 020784          296 EEC  298 (321)
Q Consensus       296 ~~~  298 (321)
                      ++.
T Consensus       262 ~i~  264 (275)
T PF00780_consen  262 TIP  264 (275)
T ss_pred             EEE
Confidence            985

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.09  E-value=0.0072  Score=54.64  Aligned_cols=211  Identities=14%  Similarity=0.167  Sum_probs=104.8

Q ss_pred             EEEEcCCCCEEEEEc---------C--CcEEEEEecCCceeEEeeeecCC-ce------EEEEEecCCCeEEEEeCCCCC
Q 020784           90 HISFNQDHGCFAAGT---------D--HGFRIYNCDPFREIFRRDFERGG-GI------GVVEMLFRCNILALVGGGPDP  151 (321)
Q Consensus        90 ~v~fs~dg~~lasg~---------~--~gv~vw~~~~~~~~~~~~~~~~~-~v------~~v~~~~~~~~~~~~sg~~~~  151 (321)
                      .+..+|||+.+++..         +  |-|.+||.++.......... .+ ..      ....++.+++.+.+..-.   
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP-~k~R~~~~~~~~~~~ls~dgk~~~V~N~T---  115 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP-PKPRAQVVPYKNMFALSADGKFLYVQNFT---  115 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET-TS-B--BS--GGGEEE-TTSSEEEEEEES---
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC-CcchheecccccceEEccCCcEEEEEccC---
Confidence            466899999888654         1  23569999998766555541 11 11      122334444444443311   


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe-EEEEECCEEEEEEcC-CcEEEEEEecc----CCCC--------
Q 020784          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFA-DLKLLHQIETI----ANPK--------  217 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~I~iwd~~-~~~~~~~l~~~----~~~~--------  217 (321)
                        --..|-|-|+..++.+.++...+...-.-..++. ..+|.|+.+--..+. .|+..++-...    ..+.        
T Consensus       116 --Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~  193 (342)
T PF06433_consen  116 --PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR  193 (342)
T ss_dssp             --SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred             --CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence              2255888889999988888877644333344343 344556666666664 34333221110    0000        


Q ss_pred             -----------------------------------------------ceEEEeeCCCceEEEee-c----CCCCcEEE--
Q 020784          218 -----------------------------------------------GLCAVSQGVGSLVLVCP-G----LQKGQVRV--  243 (321)
Q Consensus       218 -----------------------------------------------~~~~~s~~~d~~~la~s-G----s~dg~V~i--  243 (321)
                                                                     ..++++...+..++..- |    ..|+--.|  
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence                                                           01222221111111110 0    11332233  


Q ss_pred             EeeCCcc-eEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEEEcCCCcEEEEEeCCCcceeEEE
Q 020784          244 EHYASKR-TKFIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQEECCPSISAQSGL  308 (321)
Q Consensus       244 ~d~~~~~-~~~l~~H~~~V~~vafspdg~-~las~S-~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~  308 (321)
                      +|..+++ +..+.. ..++.+|+.+.+.+ +|.+.+ .++. +.|||..+|+++++++.-.....+.+
T Consensus       274 ~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~~~~~~lG~~~~l~~  339 (342)
T PF06433_consen  274 YDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLVRSIEQLGETPTLIL  339 (342)
T ss_dssp             EETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EEEEE---SSS--EEE
T ss_pred             EECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEEeehhccCCCceEEE
Confidence            3444443 223321 34578999997754 665544 5788 99999999999999975444444433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.0014  Score=64.58  Aligned_cols=221  Identities=15%  Similarity=0.157  Sum_probs=125.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCc-eEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGG-IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .|.|  |++.+..+|.|+.+| |.+.+-. .+....... +... +..+......+.+++++.+..+  +.-.|+|||++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa-~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQA-YEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehhee-cchhhhhHhhcccCceEEEEEeecCCC--CceEEEEeccc
Confidence            4554  578888899999877 4454421 222122221 2333 4444444455666666644321  23379999975


Q ss_pred             CC------cEEEE---Ee--e---CCceeEEEEeCCe--EEEE-ECCEEEEEEc---CCcEEEEEE-eccCCCCceEEEe
Q 020784          165 QS------RCIGE---LS--F---RSEVRSVKLRRDR--IIVV-LEQKIFVYNF---ADLKLLHQI-ETIANPKGLCAVS  223 (321)
Q Consensus       165 ~~------~~~~~---~~--~---~~~v~~v~~~~~~--~~~~-~~~~I~iwd~---~~~~~~~~l-~~~~~~~~~~~~s  223 (321)
                      .-      +++.+   +.  .   ..++..+.++.+.  ++++ ++|.|..+.-   +.......+ .....++.-.++.
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            42      34422   22  1   2346667777654  3333 3578888853   211111111 1223445555555


Q ss_pred             eCCCceEEEeecCCCCcEEEEeeCCcc--eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       224 ~~~d~~~la~sGs~dg~V~i~d~~~~~--~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      .++...++|+  . -..|.++.+..+.  ..++..|...++|.+|++....|+.|+..  .+.+++....+..-+|..|+
T Consensus       181 ~d~~s~lFv~--T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e--~l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  181 SDGKSVLFVA--T-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE--FLYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             cCCceeEEEE--e-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc--eEEEEcCCCcceeeeecCCC
Confidence            5554333443  2 2368888877665  45688899999999999765545555533  38999998777777887666


Q ss_pred             cceeEEEeecCceEEEee
Q 020784          302 ISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       302 ~~~~~~~s~d~~~la~~~  319 (321)
                      ... +.++..|.+|.|.+
T Consensus       256 kk~-~~~~~~g~~L~v~~  272 (933)
T KOG2114|consen  256 KKE-MLVFSFGLLLCVTT  272 (933)
T ss_pred             eEE-EEEEecCEEEEEEc
Confidence            632 23333377777754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.07  E-value=0.0062  Score=53.12  Aligned_cols=212  Identities=13%  Similarity=0.075  Sum_probs=121.5

Q ss_pred             EEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           90 HISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        90 ~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      ++.|.+ +|.++.+....+ |..|+.++..... ...  .+ ...+.+......++++.        .+.+.++|..+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~-~~G~~~~~~~g~l~v~~--------~~~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG-PNGMAFDRPDGRLYVAD--------SGGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS-EEEEEEECTTSEEEEEE--------TTCEEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC-CceEEEEccCCEEEEEE--------cCceEEEecCCCc
Confidence            578888 777777766544 6677877765533 222  33 33444442334454444        2557777999887


Q ss_pred             EEEEEee--C----CceeEEEEeCCe-EEEEEC----------CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          168 CIGELSF--R----SEVRSVKLRRDR-IIVVLE----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       168 ~~~~~~~--~----~~v~~v~~~~~~-~~~~~~----------~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ....+..  .    ..+..+.+.++. +++...          +.|..++.. ++.......- ..-.-+++++  |+..
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~~pNGi~~s~--dg~~  147 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-GFPNGIAFSP--DGKT  147 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-SSEEEEEEET--TSSE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-ccccceEECC--cchh
Confidence            6544443  1    246678888775 444432          235566666 4543333322 2222345555  4454


Q ss_pred             EEeecCCCCcEEEEeeCC--cce---EEe---eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          231 LVCPGLQKGQVRVEHYAS--KRT---KFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~--~~~---~~l---~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      |.++-+..+.|..+++..  ..+   ..+   ..-.+..-.+++..+|++.++.-..+. |.++|-. |+++..+.....
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~~  225 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPVP  225 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SSS
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCCC
Confidence            444467777877777642  212   122   222234889999999998887766777 9999987 999998877633


Q ss_pred             -ceeEEEe-ecCceEEEee
Q 020784          303 -SAQSGLW-LSSAWLRVLR  319 (321)
Q Consensus       303 -~~~~~~s-~d~~~la~~~  319 (321)
                       ....+|. .+...|-+.+
T Consensus       226 ~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  226 RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEe
Confidence             2333442 4556665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.06  E-value=2.4e-05  Score=69.30  Aligned_cols=153  Identities=13%  Similarity=0.118  Sum_probs=94.8

Q ss_pred             CcEEEEeCCCCcEEEEEeeCCceeEEEEeC-CeEEEEE--CCEEEEEEcCCc-----EEEEEEeccCCCCceEEEeeCCC
Q 020784          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGVG  227 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~--~~~I~iwd~~~~-----~~~~~l~~~~~~~~~~~~s~~~d  227 (321)
                      ..|-+-|+++|... .|...+.|.++.|+. +-++.++  .+.|..+|++..     ...+.|-.. ..+.++-+-.. +
T Consensus       234 qqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~-Ssvtslq~Lq~-s  310 (425)
T KOG2695|consen  234 QQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD-SSVTSLQILQF-S  310 (425)
T ss_pred             ceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC-cchhhhhhhcc-c
Confidence            55666676665432 344455788888876 3344443  479999999643     333343322 22222211111 2


Q ss_pred             ceEEEeecCCCCcEEEEeeCC-cc---eEEeeccccceeEEEE--CCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          228 SLVLVCPGLQKGQVRVEHYAS-KR---TKFIMAHDSRIACFAL--TQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~-~~---~~~l~~H~~~V~~vaf--spdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      .+.|.+ .+.+|+|++||... +.   +.++.+|.+.-.-+-+  .+....++++++|.. .|||.+.+|.++.+.....
T Consensus       311 ~q~Lma-S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy-tRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  311 QQKLMA-SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY-TRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             cceEee-ccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE-EEEEecccCceeeccCCCC
Confidence            244442 68899999999874 33   6688888776555544  456677888998988 9999999999998876544


Q ss_pred             ccee---EEEeecCc
Q 020784          302 ISAQ---SGLWLSSA  313 (321)
Q Consensus       302 ~~~~---~~~s~d~~  313 (321)
                      ....   -++.++++
T Consensus       389 s~~e~d~~sv~~~sr  403 (425)
T KOG2695|consen  389 SASEVDIPSVAFDSR  403 (425)
T ss_pred             ccccccccceehhcc
Confidence            3322   14455543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.06  E-value=6.9e-05  Score=72.19  Aligned_cols=222  Identities=14%  Similarity=0.098  Sum_probs=132.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeE---------------EeeeecCCceEEEEEecCCCeEEEEeC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF---------------RRDFERGGGIGVVEMLFRCNILALVGG  147 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~---------------~~~~~~~~~v~~v~~~~~~~~~~~~sg  147 (321)
                      ...+..|++|+....++|+|+.+| ++|-.+++.....               ..+. |.+.|..+.|.-....+.+.. 
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSD-   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSD-   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccC-
Confidence            345789999999999999999988 5677664322110               1111 667777777754444443322 


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe---eCCceeEEEEeCC--eEEEE-ECCEEEEEEcCCcEEEE-EEeccCCCCceE
Q 020784          148 GPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLH-QIETIANPKGLC  220 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~---~~~~v~~v~~~~~--~~~~~-~~~~I~iwd~~~~~~~~-~l~~~~~~~~~~  220 (321)
                            .+|-|.||-+-+|....+..   -.+.|.+++|+.+  ++.++ .|+.|.+=.+...++.. .+++    ....
T Consensus        91 ------t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg----~~l~  160 (1189)
T KOG2041|consen   91 ------TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG----QLLA  160 (1189)
T ss_pred             ------CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch----hecc
Confidence                  57999999887776544332   2346888999865  34444 34555544443322211 1111    1111


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCCc--------ceEE----eeccccceeEEEEC--------CCCCEEEEEeCCC
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASK--------RTKF----IMAHDSRIACFALT--------QDGQLLATSSTKG  280 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~~--------~~~~----l~~H~~~V~~vafs--------pdg~~las~S~Dg  280 (321)
                      .+.+.+|...+.+ +-.+|.+.++|.+..        ....    +......|-.+.|.        ||...||.|-..|
T Consensus       161 hv~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG  239 (1189)
T KOG2041|consen  161 HVLWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG  239 (1189)
T ss_pred             ceeecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence            2233444444443 788899999886532        1111    11112235555553        4778899998888


Q ss_pred             cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          281 TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       281 t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      . ++|-.-.+-..-.-+..|........+++|.+||||-
T Consensus       240 r-~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  240 R-MQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             e-ehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence            8 8887665544444566777777778899999999973

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.05  E-value=0.00053  Score=65.09  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=75.0

Q ss_pred             EEeeCCceeEEEEeC---CeEEEEE-----CC----EEEEEEcCCcEE--EEEEec-cCCCCceEEEeeCCCceEEEeec
Q 020784          171 ELSFRSEVRSVKLRR---DRIIVVL-----EQ----KIFVYNFADLKL--LHQIET-IANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       171 ~~~~~~~v~~v~~~~---~~~~~~~-----~~----~I~iwd~~~~~~--~~~l~~-~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      .+.....+.++.|+.   ..+....     ++    .-++|++...+.  +....- ....+.+|+.++  +...++. |
T Consensus       201 yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp--~E~kLvl-G  277 (545)
T PF11768_consen  201 YIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP--SEDKLVL-G  277 (545)
T ss_pred             EEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc--ccceEEE-E
Confidence            344445667777764   2333321     12    456788754432  221111 122344555555  4455664 9


Q ss_pred             CCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       236 s~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      ..||.|.+||...+ ...+..+.-.++.++|+|+|..|+.|+..|. +.+||+.-.-
T Consensus       278 C~DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALsp  332 (545)
T PF11768_consen  278 CEDGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSP  332 (545)
T ss_pred             ecCCeEEEEEcCCC-eeeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCc
Confidence            99999999997554 4444456677899999999999999998898 9999988544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=0.0005  Score=67.01  Aligned_cols=201  Identities=11%  Similarity=0.064  Sum_probs=128.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCC----------CeEEEEeCCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC----------NILALVGGGPDPQYPLN  156 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~----------~~~~~~sg~~~~~~~d~  156 (321)
                      .-.++.|++.| +||-|+..-|.|-|..+.+.+...++ |...|..|.|.+..          ..+.+++++     ..|
T Consensus        17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~~G   89 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----ISG   89 (1062)
T ss_pred             cccccccCccc-eEEEecCceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEecc-----ccC
Confidence            45578899988 58999988888999888887777776 67889999986532          223344433     459


Q ss_pred             cEEEEeCCCCcEEEEEeeCC-ceeEEEEeC------CeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC-C
Q 020784          157 KVMIWDDHQSRCIGELSFRS-EVRSVKLRR------DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-G  227 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~------~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~-d  227 (321)
                      .|.+||+..+..+..++++. ++..++|-+      +.+++. ..++|-+||..+|+.+.+......+.  .+|..+| |
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL--s~f~~DPfd  167 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL--SCFRVDPFD  167 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce--eeeeeCCCC
Confidence            99999999988887777654 777888743      334444 34699999999999888776544433  3344443 2


Q ss_pred             ceEEEeecCCCCcEEE-EeeCCc------ceEE-eecccc-------------------------ceeEEEECCCCCEEE
Q 020784          228 SLVLVCPGLQKGQVRV-EHYASK------RTKF-IMAHDS-------------------------RIACFALTQDGQLLA  274 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i-~d~~~~------~~~~-l~~H~~-------------------------~V~~vafspdg~~la  274 (321)
                      -.-+.+.|+ .|.|.+ -++...      .... -..|.+                         ..-..+|+|.-+...
T Consensus       168 ~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  168 SRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             cceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            222333344 456666 333211      1111 112221                         123367788754333


Q ss_pred             EEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          275 TSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       275 s~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      -.-..+. +.|+|++-..++....
T Consensus       247 fi~~pre-llv~dle~~~~l~vvp  269 (1062)
T KOG1912|consen  247 FITFPRE-LLVFDLEYECCLAVVP  269 (1062)
T ss_pred             EEEeccc-eEEEcchhhceeEEEE
Confidence            3344667 8899999877776653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.02  E-value=0.001  Score=62.00  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=107.0

Q ss_pred             CCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee
Q 020784           96 DHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (321)
Q Consensus        96 dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (321)
                      ++..++.++.+ .+..+|.++++.......  .+.+...-.. .++.+.+..       .++.|..||.++|+.+-++..
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v-~~~~v~v~~-------~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSPPLV-ANGLVVVRT-------NDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecCCEE-ECCEEEEEC-------CCCeEEEEEcCCCceeeEEcc
Confidence            35556666654 477889889988776654  3332211111 234444444       468899999999998777655


Q ss_pred             CCcee------EEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCC-----------CceEEEeeCCCceEEEeecC
Q 020784          175 RSEVR------SVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP-----------KGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       175 ~~~v~------~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~-----------~~~~~~s~~~d~~~la~sGs  236 (321)
                      .....      +.....+.++++. ++.+..+|..+++.+.+.......           .....+  . ++.+++  ++
T Consensus       174 ~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~-~~~vy~--~~  248 (377)
T TIGR03300       174 VTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--D-GGQVYA--VS  248 (377)
T ss_pred             CCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--E-CCEEEE--EE
Confidence            43221      1122334555554 469999999998876654321100           001111  1 234443  56


Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      .+|.+..+|.+++.+.--..... ....+  .++.++..++.||. |..+|..+|+.+-++
T Consensus       249 ~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       249 YQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKN  305 (377)
T ss_pred             cCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEcc
Confidence            78888889987765432111111 12222  24566777788999 999999999987655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00067  Score=66.36  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=101.7

Q ss_pred             CCCCCCeEEEEEcCC-------------CCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecC----CCeEE
Q 020784           82 SSPPPTLLHISFNQD-------------HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR----CNILA  143 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d-------------g~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~~~  143 (321)
                      ..|.+.|.-..+.-+             |.++|++++|| |.|-.+.+.+......|  +..+..++++++    .... 
T Consensus        55 GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df--~rpiksial~Pd~~~~~sk~-  131 (846)
T KOG2066|consen   55 GTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF--KRPIKSIALHPDFSRQQSKQ-  131 (846)
T ss_pred             ccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec--CCcceeEEeccchhhhhhhh-
Confidence            456666666665554             99999999988 88988888887777777  678888888876    1222 


Q ss_pred             EEeCCCCCCCCCCcEEEEeCCC---CcEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCC---
Q 020784          144 LVGGGPDPQYPLNKVMIWDDHQ---SRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPK---  217 (321)
Q Consensus       144 ~~sg~~~~~~~d~~v~iWD~~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~---  217 (321)
                      +++||.     .| +.++.-+-   ...+......+.|.+++|..+.++-+.+..|++||+...+.+..++-.....   
T Consensus       132 fv~GG~-----ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e  205 (846)
T KOG2066|consen  132 FVSGGM-----AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPE  205 (846)
T ss_pred             eeecCc-----ce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcc
Confidence            333331     24 76765332   2222223455789999999999999999999999999888877765433211   


Q ss_pred             -ceEEEeeCCCceEEEeecCCCCcEEEEeeC
Q 020784          218 -GLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (321)
Q Consensus       218 -~~~~~s~~~d~~~la~sGs~dg~V~i~d~~  247 (321)
                       .-+.+.+.++..+++  |-.| +|+|...+
T Consensus       206 ~fpphl~W~~~~~LVI--GW~d-~v~i~~I~  233 (846)
T KOG2066|consen  206 LFPPHLHWQDEDRLVI--GWGD-SVKICSIK  233 (846)
T ss_pred             cCCCceEecCCCeEEE--ecCC-eEEEEEEe
Confidence             223444444444443  6665 66664444

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.01  E-value=0.0027  Score=65.76  Aligned_cols=194  Identities=16%  Similarity=0.180  Sum_probs=116.7

Q ss_pred             CeEEEEEcCCCCEEEEEcC-------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           87 TLLHISFNQDHGCFAAGTD-------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .-..|+|-.||.|||+.+-       +.+|||+-+ +.....-+- -.+--..++|.|.++++|.+.--.    +...|.
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~----~~~~Vv  284 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLP----DRHDVV  284 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEEcC----CCcEEE
Confidence            4567999999999998763       237799866 333222221 123345678999999998877321    235566


Q ss_pred             EEeCCCCcEEEEEeeC-----CceeEEEEeCCe--EEEEECCEEEEEEcCCc--EEEEEEeccCCC-CceEEEeeCCCce
Q 020784          160 IWDDHQSRCIGELSFR-----SEVRSVKLRRDR--IIVVLEQKIFVYNFADL--KLLHQIETIANP-KGLCAVSQGVGSL  229 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-----~~v~~v~~~~~~--~~~~~~~~I~iwd~~~~--~~~~~l~~~~~~-~~~~~~s~~~d~~  229 (321)
                      +|. ++|..+.+|...     ..|..+.|+.+.  +++...+.|.+|-..+.  -+.+.+...... ...+.+++.....
T Consensus       285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR  363 (928)
T ss_pred             EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence            665 455566666654     368999999764  55656778999998763  344444432221 1223443332223


Q ss_pred             EEEeecCCCCcEEE----EeeCCc---------ceEE----------e-------------eccccceeEEEECCCCCEE
Q 020784          230 VLVCPGLQKGQVRV----EHYASK---------RTKF----------I-------------MAHDSRIACFALTQDGQLL  273 (321)
Q Consensus       230 ~la~sGs~dg~V~i----~d~~~~---------~~~~----------l-------------~~H~~~V~~vafspdg~~l  273 (321)
                      +.+  ...+|.+.+    |+....         ...+          |             -.....|.+++|++++..+
T Consensus       364 L~v--~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~  441 (928)
T PF04762_consen  364 LHV--LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRF  441 (928)
T ss_pred             EEE--EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeE
Confidence            333  233344433    221100         0001          1             1135789999999999889


Q ss_pred             EEEeCCCcEEEEEEcCC
Q 020784          274 ATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       274 as~S~Dgt~IrIWd~~t  290 (321)
                      |.-..||+ |.+|....
T Consensus       442 avl~~d~~-l~~~~~~~  457 (928)
T PF04762_consen  442 AVLTSDGS-LSIYEWDL  457 (928)
T ss_pred             EEEECCCC-EEEEEecC
Confidence            99999999 99998544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.01  E-value=1.3e-05  Score=48.56  Aligned_cols=32  Identities=19%  Similarity=0.487  Sum_probs=28.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYN  112 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~  112 (321)
                      ...|.+.|++|+|+|++.+|++|+.|+ ++|||
T Consensus         7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357888999999999999999999855 88997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.00  E-value=0.00034  Score=60.88  Aligned_cols=191  Identities=14%  Similarity=0.065  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeE--EeeeecCCceEEEEEe-cCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF--RRDFERGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~--~~~~~~~~~v~~v~~~-~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      -.++.|++-|.-++++..+| +.+-+......+.  .++. |+-..-..++. .+++++.+.+       +|+.+.-||.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGg-------DD~~l~~~D~  195 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGG-------DDGSLSCWDI  195 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecC-------CCceEEEEEe
Confidence            45778899898888888766 5433322222222  2221 23333333332 2344444433       5799999999


Q ss_pred             C-CCcEEEE--EeeCCceeEEEEeCC---eEEEEE-CCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCC--ceEEEe
Q 020784          164 H-QSRCIGE--LSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVG--SLVLVC  233 (321)
Q Consensus       164 ~-~~~~~~~--~~~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d--~~~la~  233 (321)
                      + .+.++..  ..++..|.++.-++.   .++.+. +..|++||.+++ +.+.   ......++..|...+.  +.+|++
T Consensus       196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~---~~~v~GGVWRi~~~p~~~~~lL~~  272 (339)
T KOG0280|consen  196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF---KAKVGGGVWRIKHHPEIFHRLLAA  272 (339)
T ss_pred             cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc---cCccccceEEEEecchhhhHHHHH
Confidence            8 3333322  234456777777654   344443 579999999864 3322   1122245666655543  233442


Q ss_pred             ecCCCCcEEEEeeC---Cc---ceEEeeccccceeEEEECCCCCEEEEEeC-CCcEEE-EEEcCCCc
Q 020784          234 PGLQKGQVRVEHYA---SK---RTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVR-IFNTLDGT  292 (321)
Q Consensus       234 sGs~dg~V~i~d~~---~~---~~~~l~~H~~~V~~vafspdg~~las~S~-Dgt~Ir-IWd~~tg~  292 (321)
                       +=.+| .+|-+.+   .+   .....+.|.+-+..-.|......|||||. |+. ++ +|---|+.
T Consensus       273 -CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~-~~~~Wl~~t~~  336 (339)
T KOG0280|consen  273 -CMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK-IRQLWLHITGE  336 (339)
T ss_pred             -HHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc-eeeeeeeccCC
Confidence             33333 2222222   12   23356778877777777555567999875 666 55 88655543

>smart00320 WD40 WD40 repeats

Probab=97.97  E-value=2.1e-05  Score=45.93  Aligned_cols=37  Identities=27%  Similarity=0.564  Sum_probs=33.3

Q ss_pred             ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       250 ~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      ....+..|...|++++|++++.++++++.|+. |++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            34567789999999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=4.2e-05  Score=71.60  Aligned_cols=204  Identities=13%  Similarity=0.213  Sum_probs=124.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEecCC-------ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~-~~gv~vw~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      .+|.+.|+.+.--.+.+-|++++ |++|++|.+.+.       .+.+.+.. |..+|..+.+..+-+.++.+        
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~Sc--------  802 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIASC--------  802 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeeec--------
Confidence            56778888887555555566655 578999998543       23344433 67777777776666666553        


Q ss_pred             CCCcEEEEeCCCCcEEEEEee---CC---ceeEEEEeCCeEEEE--E-CCEEEEEEcCCcEEEEEEeccC--CC-CceEE
Q 020784          154 PLNKVMIWDDHQSRCIGELSF---RS---EVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIA--NP-KGLCA  221 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~---~~---~v~~v~~~~~~~~~~--~-~~~I~iwd~~~~~~~~~l~~~~--~~-~~~~~  221 (321)
                       |+.|.+||.=.+..+....-   ++   .|.++.--...++++  + ..+|+++|.+..+-...++...  .+ ..+-+
T Consensus       803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence             57799999766655442221   12   344444322233333  3 3699999999877666665432  22 22334


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEE-EEcCCCcEEEEEe
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI-FNTLDGTLLQEEC  298 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrI-Wd~~tg~~i~~~~  298 (321)
                      +...+.|+.+|+ |-.+|.|.+.|.+++. +..++.-.-....++ -|..+.||....|.+ +.| |...+|....+.+
T Consensus       882 iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  882 IAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             EEeccCcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCeeeeccC
Confidence            444455678884 8889999998877765 344443332233333 255667777777888 777 8877776655543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.94  E-value=0.00055  Score=66.23  Aligned_cols=226  Identities=11%  Similarity=0.083  Sum_probs=133.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEEecCCceeEEee-eecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHGF-RIYNCDPFREIFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~gv-~vw~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..+|.+.|.-+.|+.+.+.|.+...+|+ .||=+-.+...-... .+....|..++|.-++..++++-       .||.|
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY-------eDGav  139 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY-------EDGAV  139 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE-------ccCCE
Confidence            3578899999999999999988888885 599876654211111 11245677788888888887776       56777


Q ss_pred             EEEeCCCCcEE-EEEeeCCceeEEEEeCCeE---EEEECCEEEEEEcCCc-------EEEEEEeccC--CCCceEEEe--
Q 020784          159 MIWDDHQSRCI-GELSFRSEVRSVKLRRDRI---IVVLEQKIFVYNFADL-------KLLHQIETIA--NPKGLCAVS--  223 (321)
Q Consensus       159 ~iWD~~~~~~~-~~~~~~~~v~~v~~~~~~~---~~~~~~~I~iwd~~~~-------~~~~~l~~~~--~~~~~~~~s--  223 (321)
                      .|=.++..+.- .+++.. ....+.|+++.-   +.-..+.+.+||.+..       ++.....+..  .+..+..+.  
T Consensus       140 IVGsvdGNRIwgKeLkg~-~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~  218 (1189)
T KOG2041|consen  140 IVGSVDGNRIWGKELKGQ-LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN  218 (1189)
T ss_pred             EEEeeccceecchhcchh-eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence            66555433211 111111 123456666532   2223468889987421       1111111110  011111111  


Q ss_pred             ------eCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCc--------EEEEEEcC
Q 020784          224 ------QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------LVRIFNTL  289 (321)
Q Consensus       224 ------~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt--------~IrIWd~~  289 (321)
                            ..||...+|+ +-.+|.+.|....+.+.-.+-.-...|..+.|+++|..||.++.|..        .|..+ ..
T Consensus       219 ~g~~~~v~pdrP~lav-cy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy-sp  296 (1189)
T KOG2041|consen  219 TGPYQPVPPDRPRLAV-CYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY-SP  296 (1189)
T ss_pred             cCccccCCCCCCEEEE-EEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEe-cc
Confidence                  1246677775 78899999965544443333333377899999999999999987642        13322 23


Q ss_pred             CCcEEEEEeCCCcceeEEEeecCceEEE
Q 020784          290 DGTLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       290 tg~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                      -|+.+.+++. ....+.+++|.|.=|..
T Consensus       297 ~G~i~gtlkv-pg~~It~lsWEg~gLri  323 (1189)
T KOG2041|consen  297 YGHIVGTLKV-PGSCITGLSWEGTGLRI  323 (1189)
T ss_pred             chhheEEEec-CCceeeeeEEcCCceEE
Confidence            4777788864 33466788888855443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.87  E-value=0.0068  Score=57.56  Aligned_cols=162  Identities=15%  Similarity=0.162  Sum_probs=86.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      ....++++|+|++++.++++...||.....+..   .+   +......|.. .+.+|+..       ..++|+|+.--+.
T Consensus        34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k---~~---G~g~~~vw~~-~n~yAv~~-------~~~~I~I~kn~~~   99 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK---AF---GSGLSFVWSS-RNRYAVLE-------SSSTIKIYKNFKN   99 (443)
T ss_dssp             --SEEEE-TTSSEEEEEETTEEEEEETTTTEEE---EE---EE-SEEEE-T-SSEEEEE--------TTS-EEEEETTEE
T ss_pred             CCeeEEECCCCCEEEEEcCCEEEEEEccCCccc---cc---CceeEEEEec-CccEEEEE-------CCCeEEEEEcCcc
Confidence            356799999999999988888889884444332   11   2222334555 45677766       3478999732222


Q ss_pred             cEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEee
Q 020784          167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (321)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~  246 (321)
                      .....++....+..+.- +..+.+..++.|.+||+.+++.+++++...    +-.+.+++++.++|.. +. ..+.|.+.
T Consensus       100 ~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~----vk~V~Ws~~g~~val~-t~-~~i~il~~  172 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVSA----VKYVIWSDDGELVALV-TK-DSIYILKY  172 (443)
T ss_dssp             -TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-E-----EEEEE-TTSSEEEEE--S--SEEEEEE
T ss_pred             ccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecCC----CcEEEEECCCCEEEEE-eC-CeEEEEEe
Confidence            22223444433444333 556666677789999999999999987531    3444555666778763 33 36777665


Q ss_pred             CCc------------ceEEeeccccceeEEEECCC
Q 020784          247 ASK------------RTKFIMAHDSRIACFALTQD  269 (321)
Q Consensus       247 ~~~------------~~~~l~~H~~~V~~vafspd  269 (321)
                      ...            ....+......|.+.+|..|
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            544            44444444667888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.85  E-value=0.0072  Score=57.03  Aligned_cols=42  Identities=19%  Similarity=0.205  Sum_probs=34.9

Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       258 ~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      .+++..|++||+|+++|--..+|+ +.|.+..-.+.+.++..+
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeecC
Confidence            368999999999999999999999 888877666677677655

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=0.00071  Score=66.02  Aligned_cols=220  Identities=11%  Similarity=0.122  Sum_probs=122.2

Q ss_pred             CCCCCeEEEEEcCC-----------CC-EEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEec---CC-CeEEEE
Q 020784           83 SPPPTLLHISFNQD-----------HG-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF---RC-NILALV  145 (321)
Q Consensus        83 ~~~~~V~~v~fs~d-----------g~-~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~---~~-~~~~~~  145 (321)
                      .|...|+.|.|.|-           .. +||++...| |.|||............ +...+..++|.+   ++ ..++..
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaI  131 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAI  131 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEe
Confidence            45678999999762           12 455665555 88999987765544444 567777777754   33 344444


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeE-EEEeCC--------------------------------------
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-VKLRRD--------------------------------------  186 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~~--------------------------------------  186 (321)
                      .+       ...|.+|+..+|+..-.......+.+ +.+.|.                                      
T Consensus       132 h~-------ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~  204 (1062)
T KOG1912|consen  132 HG-------SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH  204 (1062)
T ss_pred             cC-------CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence            43       47899999888876544333222221 222211                                      


Q ss_pred             ----------------------------------------eEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC
Q 020784          187 ----------------------------------------RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       187 ----------------------------------------~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                                                              .+++..-..+.++|++-...+..+.-..+....+.+-|++
T Consensus       205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~  284 (1062)
T KOG1912|consen  205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP  284 (1062)
T ss_pred             cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence                                                    1233333456666666555555555555555567777777


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcce--EEeecc-----ccceeE-----------EEECCC-CCEEEEEeCCCcEEEEEE
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRT--KFIMAH-----DSRIAC-----------FALTQD-GQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~--~~l~~H-----~~~V~~-----------vafspd-g~~las~S~Dgt~IrIWd  287 (321)
                      ....|.+ +..||.+.||..+....  +.-.+|     ...|.+           .+-.|. ...++.--.+|. +.+|.
T Consensus       285 ~rd~Lfc-lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~-~~~w~  362 (1062)
T KOG1912|consen  285 RRDALFC-LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD-STFWQ  362 (1062)
T ss_pred             CcceEEE-EecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcch-hHHHh
Confidence            7666664 89999999987553211  000001     111222           222343 223333334666 77999


Q ss_pred             cCCCcEEEEEeCCCcceeEEEeecC
Q 020784          288 TLDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       288 ~~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                      +.+|+.-..++.+.....+-|.+.+
T Consensus       363 l~~~ri~~~~~s~~iel~~pf~f~~  387 (1062)
T KOG1912|consen  363 LSNGRIHLDYRSSSIELVLPFDFNL  387 (1062)
T ss_pred             hhcCCcCcccccccccccccccccC
Confidence            9988765544433333344444444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.80  E-value=0.00084  Score=57.90  Aligned_cols=135  Identities=5%  Similarity=-0.062  Sum_probs=79.6

Q ss_pred             CCCcEEEEeCCCCcEEE-EEeeCC----ceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCC
Q 020784          154 PLNKVMIWDDHQSRCIG-ELSFRS----EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~-~~~~~~----~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d  227 (321)
                      ..|...+|...+.+.+. .+..+.    -+...|.....+.++. +.++++.++..+...  +..|.........+.++|
T Consensus        92 ~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd  169 (344)
T KOG4532|consen   92 ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSND  169 (344)
T ss_pred             ccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCC
Confidence            45899999988765432 222211    1223333344555554 558888887543321  222322222333344445


Q ss_pred             ceEEEeecCCCCcEEEEeeCCcc---eE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          228 SLVLVCPGLQKGQVRVEHYASKR---TK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~~~---~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      +.++++.|......+ +.+....   +. ....-...=.+..|+.+...||++..||+ +-|||++...
T Consensus       170 ~~~~~~Vgds~~Vf~-y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~~  236 (344)
T KOG4532|consen  170 PSWGSSVGDSRRVFR-YAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVRNMA  236 (344)
T ss_pred             CceEEEecCCCcceE-EEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEecccc
Confidence            588887677654444 3333222   22 23334555688999999999999999999 9999999754

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00018  Score=68.52  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=72.5

Q ss_pred             eEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeecccccee-EEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~-~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      +-.+-++|...++|+ +..+|.|.+..++-..+-++.-|...|+ +++|.|||++||.|=.||+ |+|-|+.+|..+..+
T Consensus        23 i~~~ewnP~~dLiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVSF  100 (665)
T ss_pred             eEEEEEcCccchhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceecc
Confidence            444455666678885 9999999998888777888888888888 9999999999999999999 999999999998875


Q ss_pred             eCCCcceeEEEeec
Q 020784          298 CCPSISAQSGLWLS  311 (321)
Q Consensus       298 ~~g~~~~~~~~s~d  311 (321)
                      ...-...+....|+
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            44444444444454

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0015  Score=64.09  Aligned_cols=180  Identities=13%  Similarity=0.156  Sum_probs=117.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ..+.|++++  +++|+-|..+| |.+++++-.-   ...+.|...      ..++.++++++       .||+|.|--+-
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Gey~asCS-------~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGEYVASCS-------DDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCceEEEec-------CCCcEEEeecc
Confidence            467888887  68999999977 6688765331   111111111      45688899988       78999999999


Q ss_pred             CCcEEEEEeeCCceeEEEEeCC-------eEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          165 QSRCIGELSFRSEVRSVKLRRD-------RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~-------~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +.+....+.++.++.+++++|+       ++++++...+.++.-+=.+.......+.....+.++++.+  .++|. .+.
T Consensus       102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~lIAW-and  178 (846)
T KOG2066|consen  102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--NLIAW-AND  178 (846)
T ss_pred             CCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecC--cEEEE-ecC
Confidence            9998888999999999999987       2333333336666532111112223344445577778876  78887 444


Q ss_pred             CCcEEEEeeCCcceE-Eeeccccc------eeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          238 KGQVRVEHYASKRTK-FIMAHDSR------IACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       238 dg~V~i~d~~~~~~~-~l~~H~~~------V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      + -|+|+|...++.. .+..-...      .-.+.|.++.+++ -| +..+ |+|..++.
T Consensus       179 ~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~-v~i~~I~~  234 (846)
T KOG2066|consen  179 D-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDS-VKICSIKK  234 (846)
T ss_pred             C-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCe-EEEEEEec
Confidence            4 5888998876643 33322233      3457888766544 34 5666 99999983

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.64  E-value=0.0067  Score=54.17  Aligned_cols=202  Identities=10%  Similarity=0.085  Sum_probs=111.9

Q ss_pred             CcccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEe-cCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           78 ESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      +.+..+|.+.|+....-|...-+.+.++ .++|||-. +.++.--...+..-....+++.......+.+.-       ..
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~-------~n   89 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQ-------DN   89 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEE-------ec
Confidence            3334566677887777776666777776 67999954 333221111110134455555555555554443       34


Q ss_pred             CcEEEEeCCC----CcEEEE-EeeCCceeEEEEe--CCeEEEEECCEEEEEEc-CCcEEEEEEeccCCCCceEEEeeCCC
Q 020784          156 NKVMIWDDHQ----SRCIGE-LSFRSEVRSVKLR--RDRIIVVLEQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGVG  227 (321)
Q Consensus       156 ~~v~iWD~~~----~~~~~~-~~~~~~v~~v~~~--~~~~~~~~~~~I~iwd~-~~~~~~~~l~~~~~~~~~~~~s~~~d  227 (321)
                      +++.-+.+..    ....+. +.+...|..+-|.  +..+++++.++-..|-. +.+..+..+.....     +....-|
T Consensus        90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-----~t~~~~d  164 (404)
T KOG1409|consen   90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-----ASALQFD  164 (404)
T ss_pred             ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc-----CCCCcee
Confidence            6666654322    111111 1223355565554  33445555455555543 22222211111000     0001111


Q ss_pred             ceEEEeecCCCCcEEEEee---CCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          228 SLVLVCPGLQKGQVRVEHY---ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~---~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      -. .++.|...|.|.+-.+   .-..+.++++|.+.|++++|.+..++|.+|+.|.. |-+||+--++-
T Consensus       165 ~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g  231 (404)
T KOG1409|consen  165 AL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKG  231 (404)
T ss_pred             eE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcc
Confidence            11 3445888888877333   33557799999999999999999999999999999 88999975543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.011  Score=55.93  Aligned_cols=222  Identities=13%  Similarity=0.156  Sum_probs=124.3

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      -..||-|++++|.-..+++.||+...+..+-.+.. .-.+|...+|++.++++|--+-..+  -....+.+-.+-+++.+
T Consensus       310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~--~~parvtL~evPs~~~i  386 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETN--NIPARVTLMEVPSKREI  386 (698)
T ss_pred             eEEeccCCceeEEeccceEEEEecCceeeeccccc-CCccccCcccCCCcceEEEEccccc--CCcceEEEEecCcccee
Confidence            46899999999988889999999877665444443 2356777788888887775543321  12345666666665555


Q ss_pred             EEEeeCCceeE--EEEeC--CeEEEEEC-----------CEEEEEEcCCcEE-EEEEeccCCCCceEEEeeCCCceE-EE
Q 020784          170 GELSFRSEVRS--VKLRR--DRIIVVLE-----------QKIFVYNFADLKL-LHQIETIANPKGLCAVSQGVGSLV-LV  232 (321)
Q Consensus       170 ~~~~~~~~v~~--v~~~~--~~~~~~~~-----------~~I~iwd~~~~~~-~~~l~~~~~~~~~~~~s~~~d~~~-la  232 (321)
                      ++.... .|..  +.|..  +.+++-.+           ..+.|+.++..+. +-.+...   ..+++|.+.|.|.- .+
T Consensus       387 Rt~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk---e~vi~FaWEP~gdkF~v  462 (698)
T KOG2314|consen  387 RTKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK---ESVIAFAWEPHGDKFAV  462 (698)
T ss_pred             eeccce-eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc---hheeeeeeccCCCeEEE
Confidence            443322 1222  33322  23333221           1344444432221 1112111   23555655554433 33


Q ss_pred             eecCCC-CcEEEEeeCCcc-----eEEeeccccceeEEEECCCCCEEEEE---eCCCcEEEEEEcCCCcEEEEEeCCCcc
Q 020784          233 CPGLQK-GQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATS---STKGTLVRIFNTLDGTLLQEECCPSIS  303 (321)
Q Consensus       233 ~sGs~d-g~V~i~d~~~~~-----~~~l~~H~~~V~~vafspdg~~las~---S~Dgt~IrIWd~~tg~~i~~~~~g~~~  303 (321)
                      ++|... .++.+|...+..     ++.|..  ...+.|-|+|.|++++.+   |..|. +...|+.-..+..+-...|..
T Consensus       463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k~~~~~eh~~  539 (698)
T KOG2314|consen  463 ISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLKDTASPEHFA  539 (698)
T ss_pred             EEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhhhccCccccc
Confidence            345443 367777665321     123333  557899999999998775   55677 889998743333222222322


Q ss_pred             -eeEEEeecCceEEEeecC
Q 020784          304 -AQSGLWLSSAWLRVLRTL  321 (321)
Q Consensus       304 -~~~~~s~d~~~la~~~~~  321 (321)
                       ..+-.-++|+|+.+++++
T Consensus       540 at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  540 ATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             cccceECCCCCEEEEeeeh
Confidence             233556888998887653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00031  Score=64.99  Aligned_cols=156  Identities=15%  Similarity=0.098  Sum_probs=104.9

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee--CCceeEEEEeC---CeEEEE--ECCEEEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRR---DRIIVV--LEQKIFV  198 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~---~~~~~~--~~~~I~i  198 (321)
                      |.|.+..|.+...+..++..+       +|..|.+||...+.....+..  ...|.+-.|-+   +.-++.  -++++|+
T Consensus       141 H~GcVntV~FN~~Gd~l~SgS-------DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGS-------DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             CCCccceeeecccCceeeccC-------ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            577788888777777766655       689999999988876555532  23566655654   333332  3578888


Q ss_pred             EEcC-CcEE--EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc----eEEeecccc---ceeEEEECC
Q 020784          199 YNFA-DLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS---RIACFALTQ  268 (321)
Q Consensus       199 wd~~-~~~~--~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~----~~~l~~H~~---~V~~vafsp  268 (321)
                      =.+. ++..  .+.+..|.+++..+++-++.-..++  +++.|+.|.-.|+....    +..-..+..   ...+++..|
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~--S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL--SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCccc--ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            7763 3322  2334557777777887776555555  57889988877766432    222333444   468899998


Q ss_pred             CCC-EEEEEeCCCcEEEEEEcCCC
Q 020784          269 DGQ-LLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       269 dg~-~las~S~Dgt~IrIWd~~tg  291 (321)
                      ... +||+|+.|.- +||+|.+.-
T Consensus       292 ~nt~~faVgG~dqf-~RvYD~R~~  314 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQF-ARVYDQRRI  314 (559)
T ss_pred             CCccccccCChhhh-hhhhcccch
Confidence            755 8999999998 999998863

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.43  E-value=0.056  Score=50.72  Aligned_cols=187  Identities=12%  Similarity=0.067  Sum_probs=99.2

Q ss_pred             CCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceE--------EE--EEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           97 HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIG--------VV--EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        97 g~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~--------~v--~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      +..+.+++. ..+.-+|.++++.+....+  .....        .+  .....++.+.+.+       .++.+.-+|.++
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-------~~g~l~ald~~t  139 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDL--SEKDGWFSKNKSALLSGGVTVAGGKVYIGS-------EKGQVYALNAED  139 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcC--CCcccccccccccccccccEEECCEEEEEc-------CCCEEEEEECCC
Confidence            334444444 3456777777777666554  11000        00  0011233444443       458899999999


Q ss_pred             CcEEEEEeeCCceeE-EEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCC-----ceEEEeeCCCceEEEeecCCC
Q 020784          166 SRCIGELSFRSEVRS-VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       166 ~~~~~~~~~~~~v~~-v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~-----~~~~~s~~~d~~~la~sGs~d  238 (321)
                      |+.+-..+....+.+ -....+.+++.. ++.+..+|..+++.+.++.......     ..-.+.   ++.+++  ++.+
T Consensus       140 G~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~--~~~~  214 (394)
T PRK11138        140 GEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIV--GGDN  214 (394)
T ss_pred             CCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEE--EcCC
Confidence            998777666554433 223455566654 4689999999999988876531110     111111   123333  5667


Q ss_pred             CcEEEEeeCCcceE-Eeeccc----c---ceeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          239 GQVRVEHYASKRTK-FIMAHD----S---RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       239 g~V~i~d~~~~~~~-~l~~H~----~---~V~~vafsp--dg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      |.+...|..++... ......    .   ....+.-+|  .+..+..++.+|. +.-+|+.+|+.+-+..
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~  283 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKRE  283 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeec
Confidence            77766666554432 111000    0   001111122  1334555666787 8888888888765543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.42  E-value=0.0062  Score=61.26  Aligned_cols=132  Identities=17%  Similarity=0.262  Sum_probs=89.3

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCc--eeEEEEe-------CCeEEEE-ECCEEEEEEcCCc--EEEEE-EeccCCCCceE
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSE--VRSVKLR-------RDRIIVV-LEQKIFVYNFADL--KLLHQ-IETIANPKGLC  220 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~--v~~v~~~-------~~~~~~~-~~~~I~iwd~~~~--~~~~~-l~~~~~~~~~~  220 (321)
                      ..+.|.-.|++.|+.+.+.+.+..  |..++-.       +...+++ .++.+..||.|-.  +++.. .+.-.......
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            458899999999999999988764  4444332       2344555 4579999999742  33321 11111222345


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      |++...+|.+.+  |+.+|.||++|...+..+ .|.+-..+|..|..+.||++++..+ +.. +-+.++.
T Consensus       582 ~~aTt~~G~iav--gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~ty-LlLi~t~  647 (794)
T PF08553_consen  582 CFATTEDGYIAV--GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTY-LLLIDTL  647 (794)
T ss_pred             EEEecCCceEEE--EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cce-EEEEEEe
Confidence            566666766554  999999999886544444 5678889999999999999876555 555 6688763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.42  E-value=0.053  Score=48.49  Aligned_cols=181  Identities=17%  Similarity=0.219  Sum_probs=106.4

Q ss_pred             EEEcCCCCEEEEEcC-----CcEE-EEEec-CCceeEEeeeecCCceE--EEEEecCCCeEEEEeCCCCCCC--------
Q 020784           91 ISFNQDHGCFAAGTD-----HGFR-IYNCD-PFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPDPQY--------  153 (321)
Q Consensus        91 v~fs~dg~~lasg~~-----~gv~-vw~~~-~~~~~~~~~~~~~~~v~--~v~~~~~~~~~~~~sg~~~~~~--------  153 (321)
                      ..||+||++|.+.=+     .|+. |||.. ..+.+-.+.   .+.|.  -+.+.+++..|+++-||=.+.=        
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~---s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN  132 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP---SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN  132 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec---CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence            789999999887532     4555 99998 555544443   33343  2345788888888877653321        


Q ss_pred             ---CCCcEEEEeCCCCcEEEEEee----C-CceeEEEEeCCeEEEEE-C---------CEEEEEEcCCcEEEEEEec---
Q 020784          154 ---PLNKVMIWDDHQSRCIGELSF----R-SEVRSVKLRRDRIIVVL-E---------QKIFVYNFADLKLLHQIET---  212 (321)
Q Consensus       154 ---~d~~v~iWD~~~~~~~~~~~~----~-~~v~~v~~~~~~~~~~~-~---------~~I~iwd~~~~~~~~~l~~---  212 (321)
                         .+-.+..-|..+|+.+....+    + -++.-+++..+..+... +         --|-+++-.  +.++-+..   
T Consensus       133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~  210 (305)
T PF07433_consen  133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEE  210 (305)
T ss_pred             hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChH
Confidence               123366677888888776554    2 25777888777655442 1         134444332  22333322   


Q ss_pred             ----cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCc
Q 020784          213 ----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (321)
Q Consensus       213 ----~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt  281 (321)
                          -.++++.+++  +.++.+++++.=..|.+.+||..++.+..... -..+-.|+-.+++ +++|.+ .|.
T Consensus       211 ~~~~l~~Y~gSIa~--~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  211 QWRRLNGYIGSIAA--DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-LPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             HHHhhCCceEEEEE--eCCCCEEEEECCCCCEEEEEECCCCCEeeccc-cCceeeeeecCCc-eEEeCC-Ccc
Confidence                1233444444  45557777666667788889988876543321 2345667777766 566554 454

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.41  E-value=0.05  Score=51.02  Aligned_cols=182  Identities=10%  Similarity=-0.009  Sum_probs=97.9

Q ss_pred             EEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEE--Eec--CCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee
Q 020784          100 FAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVE--MLF--RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (321)
Q Consensus       100 lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~--~~~--~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (321)
                      +..+.. +.+.-+|.++++.+.....  ........  ..+  ....+.+.+       .++.+...|.++|+.+-....
T Consensus       163 v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~sP~v~~~~v~~~~-------~~g~v~a~d~~~G~~~W~~~~  233 (394)
T PRK11138        163 VLVHTSNGMLQALNESDGAVKWTVNL--DVPSLTLRGESAPATAFGGAIVGG-------DNGRVSAVLMEQGQLIWQQRI  233 (394)
T ss_pred             EEEECCCCEEEEEEccCCCEeeeecC--CCCcccccCCCCCEEECCEEEEEc-------CCCEEEEEEccCChhhheecc
Confidence            333444 4466778888877665543  11100000  000  122333333       357788888888876554432


Q ss_pred             CCc-----------e-eEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcE
Q 020784          175 RSE-----------V-RSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (321)
Q Consensus       175 ~~~-----------v-~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V  241 (321)
                      ...           + ..-.+..+.++++. ++.+..+|..+++.+.+...... . ...  .. ++.+++  ++.+|.+
T Consensus       234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~-~~~--~~-~~~vy~--~~~~g~l  306 (394)
T PRK11138        234 SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-N-DFA--VD-GGRIYL--VDQNDRV  306 (394)
T ss_pred             ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-c-CcE--EE-CCEEEE--EcCCCeE
Confidence            111           0 11112345555554 57999999999987766543211 1 111  12 224443  4677888


Q ss_pred             EEEeeCCcceE-Eeecc-ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          242 RVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       242 ~i~d~~~~~~~-~l~~H-~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      ...|..++... ....- .....+.++  .+.+|..++.||. |.+.|..+|+.+.+++.+
T Consensus       307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~-l~~ld~~tG~~~~~~~~~  364 (394)
T PRK11138        307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY-LHWINREDGRFVAQQKVD  364 (394)
T ss_pred             EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCE-EEEEECCCCCEEEEEEcC
Confidence            88777665433 11110 111222222  2455667888999 999999999999887654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.41  E-value=0.077  Score=46.48  Aligned_cols=118  Identities=11%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-C--cEEEEEecCCceeEEeeeecCCce--EEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           86 PTLLHISFNQDHGCFAAGTD-H--GFRIYNCDPFREIFRRDFERGGGI--GVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~--gv~vw~~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .-...+.|..||.++-+.+. +  .++.+|+++++......+  ....  ..+...  ++.+...+.      ..+...+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~~--~d~l~qLTW------k~~~~f~  114 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITIL--GDKLYQLTW------KEGTGFV  114 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEEE--TTEEEEEES------SSSEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEEE--CCEEEEEEe------cCCeEEE
Confidence            34567888778877766555 3  378999999987666655  2211  112221  344555553      4699999


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEeCCeEEEEEC-CEEEEEEcCCcEEEEEEecc
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETI  213 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~~~l~~~  213 (321)
                      ||.++.+.+.++....+-..++...+.++...+ .+++++|..+.+.++++.-.
T Consensus       115 yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  115 YDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             EETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             EccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            999999999999998888889977777666643 59999999988888877643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0071  Score=55.05  Aligned_cols=228  Identities=11%  Similarity=0.020  Sum_probs=117.0

Q ss_pred             cCCCCCCeEEEEEcCCCC-EEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           81 SSSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~-~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..++...|+.++|+|... +|..++- +.+.|.|+++.........  ...+-.++|.-+....+-+|.      ..|.|
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl------~nG~V  260 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGL------QNGMV  260 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEec------cCceE
Confidence            356677999999999877 5666665 6688999998877665554  456777777666655555542      46999


Q ss_pred             EEEeCCCCc-EEEEEeeC---CceeEEE-------EeCCeEEEEECCEEEEEEcCC--cEEEEEEeccCCCCceEEEeeC
Q 020784          159 MIWDDHQSR-CIGELSFR---SEVRSVK-------LRRDRIIVVLEQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       159 ~iWD~~~~~-~~~~~~~~---~~v~~v~-------~~~~~~~~~~~~~I~iwd~~~--~~~~~~l~~~~~~~~~~~~s~~  225 (321)
                      .|+|++..+ .+.++...   .+|..++       |....+++++.-...+|++.-  ......+.. ..+..++.++.+
T Consensus       261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlel-e~pG~cismqy~  339 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLEL-EPPGICISMQYH  339 (463)
T ss_pred             EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCccccc-CCCcceeeeeec
Confidence            999998654 22232221   1333332       222456666655666776621  111111111 122234444444


Q ss_pred             CCc-eEEEeecCCCC------cE--EEEeeCCcce-EEeecc-ccc------eeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          226 VGS-LVLVCPGLQKG------QV--RVEHYASKRT-KFIMAH-DSR------IACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       226 ~d~-~~la~sGs~dg------~V--~i~d~~~~~~-~~l~~H-~~~------V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      +-. .+|+ +-..+.      .|  ++.+.....+ ..-..| .++      =..+.=.++..+++..+.+...+.+||.
T Consensus       340 ~~snh~l~-tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~  418 (463)
T KOG1645|consen  340 GVSNHLLL-TYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP  418 (463)
T ss_pred             CccceEEE-EecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence            321 1222 111100      00  1111101111 011111 000      0112223455666655545444999999


Q ss_pred             CCCcEEEEEeCCCcceeEEEe--ecCceEEEe
Q 020784          289 LDGTLLQEECCPSISAQSGLW--LSSAWLRVL  318 (321)
Q Consensus       289 ~tg~~i~~~~~g~~~~~~~~s--~d~~~la~~  318 (321)
                      .+++.++++........+...  .-+.|||+.
T Consensus       419 ~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L  450 (463)
T KOG1645|consen  419 HSFEVVQTLALSEPVLDICPNDTNGSSYLALL  450 (463)
T ss_pred             chhheeeecccCcceeecceeecCCcchhhhe
Confidence            999999998654333333222  234677764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.37  E-value=0.031  Score=57.55  Aligned_cols=193  Identities=15%  Similarity=0.124  Sum_probs=115.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe--
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD--  162 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD--  162 (321)
                      ..|.++.|-.|+.-+..+...| +.+-|.++......-..  +.+|.+++|+++...++++++..       ++.+-+  
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v--d~GI~aaswS~Dee~l~liT~~~-------tll~mT~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV--DNGISAASWSPDEELLALITGRQ-------TLLFMTKD  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec--cCceEEEeecCCCcEEEEEeCCc-------EEEEEecc
Confidence            5899999999988777776644 66668777765544443  67899999999999999999653       332221  


Q ss_pred             ---------------------CCCCcEEEEEe----------------------eCCceeEEEEeCCe--EEEE-----E
Q 020784          163 ---------------------DHQSRCIGELS----------------------FRSEVRSVKLRRDR--IIVV-----L  192 (321)
Q Consensus       163 ---------------------~~~~~~~~~~~----------------------~~~~v~~v~~~~~~--~~~~-----~  192 (321)
                                           +.-|+.-..|.                      .+..=++|+|-.+.  +++.     .
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence                                 00011000111                      11122347776654  4432     2


Q ss_pred             C-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec--CCCCcEEEEeeCCcc---eE-EeeccccceeEEE
Q 020784          193 E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKR---TK-FIMAHDSRIACFA  265 (321)
Q Consensus       193 ~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG--s~dg~V~i~d~~~~~---~~-~l~~H~~~V~~va  265 (321)
                      + .+|++||-. +.+- ... .......-++++.|.|.++|+..  ..|+.|.++..+.-.   .. -+..-...|..++
T Consensus       220 ~~RkirV~drE-g~Ln-s~s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALN-STS-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             CceeEEEeccc-chhh-ccc-CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence            4 699999976 4331 111 11122234556666777877533  335567776654321   11 1223334499999


Q ss_pred             ECCCCCEEEE---EeCCCcEEEEEEcCCC
Q 020784          266 LTQDGQLLAT---SSTKGTLVRIFNTLDG  291 (321)
Q Consensus       266 fspdg~~las---~S~Dgt~IrIWd~~tg  291 (321)
                      |+.++..||+   ..... .|++|-+.+.
T Consensus       297 Wns~sdiLAv~~~~~e~~-~v~lwt~~Ny  324 (1265)
T KOG1920|consen  297 WNSNSDILAVVTSNLENS-LVQLWTTGNY  324 (1265)
T ss_pred             ecCCCCceeeeecccccc-eEEEEEecCe
Confidence            9999999998   44444 4999988764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.31  E-value=0.0019  Score=64.24  Aligned_cols=147  Identities=16%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             CCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCC--CCCCCCCcEEEEeCCCCcEEEE
Q 020784           95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP--DPQYPLNKVMIWDDHQSRCIGE  171 (321)
Q Consensus        95 ~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~--~~~~~d~~v~iWD~~~~~~~~~  171 (321)
                      .++++|.+|...| |.+-|..+.+.+..... |.+.+..  +.-.+|+++++|-+.  .....|.-|+|||+++.+.+.-
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeec-cccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            4678888998855 77989988888777665 5555554  455789998887433  2344577899999999888777


Q ss_pred             EeeCCceeEEEEeCC---eEEEEE-CCEEEEEEc---CCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEE
Q 020784          172 LSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNF---ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (321)
Q Consensus       172 ~~~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~---~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~  244 (321)
                      +.++....-+.|+|.   ++++++ .++..+-|.   .+-. ...+.-+....++.+|...+++..+|+ |..+|.|.+|
T Consensus       262 I~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alaf-gd~~g~v~~w  339 (1118)
T KOG1275|consen  262 IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAF-GDHEGHVNLW  339 (1118)
T ss_pred             cccccCchhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEE-ecccCcEeee
Confidence            777766666777764   466664 468888773   2221 122222222223444444445588887 9999999999


Q ss_pred             ee
Q 020784          245 HY  246 (321)
Q Consensus       245 d~  246 (321)
                      .-
T Consensus       340 a~  341 (1118)
T KOG1275|consen  340 AD  341 (1118)
T ss_pred             cC
Confidence            73

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.27  E-value=0.013  Score=55.86  Aligned_cols=122  Identities=16%  Similarity=0.159  Sum_probs=77.2

Q ss_pred             EEEEEEcCC--cEEEEEEeccCCCCceEEEeeCCCceEEEe--ecCCCCcEEE----EeeCCcceE----Eeecccccee
Q 020784          195 KIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSLVLVC--PGLQKGQVRV----EHYASKRTK----FIMAHDSRIA  262 (321)
Q Consensus       195 ~I~iwd~~~--~~~~~~l~~~~~~~~~~~~s~~~d~~~la~--sGs~dg~V~i----~d~~~~~~~----~l~~H~~~V~  262 (321)
                      .+.+|.+..  .+.+..+.+..++ ..+.|+...+..+..+  +-+.+|.+.+    |+.....+.    +--.+.+.|.
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~  263 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI  263 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence            455555533  3444555554444 3455665555555543  2244665554    444433222    2336788999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       263 ~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      |++++|+...|+.|+.||+ |.+||..++.-... +...-...++..++|..+.|+.
T Consensus       264 ~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s  318 (545)
T PF11768_consen  264 CCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGS  318 (545)
T ss_pred             EEecCcccceEEEEecCCe-EEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEc
Confidence            9999999999999999999 99999988744332 2334445556778998988864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.26  E-value=0.0044  Score=62.29  Aligned_cols=120  Identities=17%  Similarity=0.249  Sum_probs=79.0

Q ss_pred             CEEEEEEcCCcEEEEEEeccCCCCceEEEeeC-------CCceEEEeecCCCCcEEEEeeCCc--ceEE--ee--ccccc
Q 020784          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQG-------VGSLVLVCPGLQKGQVRVEHYASK--RTKF--IM--AHDSR  260 (321)
Q Consensus       194 ~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~-------~d~~~la~sGs~dg~V~i~d~~~~--~~~~--l~--~H~~~  260 (321)
                      +.|+-.|+..|+.+...+.+... .+..+.++       +...++   |-.+..+.-||.+..  .+..  .+  .....
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCCC
Confidence            58888899999999999887543 25566553       333344   444555655665532  2221  11  23456


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC--CCcceeEEEeecCce-EEEeec
Q 020784          261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC--PSISAQSGLWLSSAW-LRVLRT  320 (321)
Q Consensus       261 V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~--g~~~~~~~~s~d~~~-la~~~~  320 (321)
                      .+|++-+.+|. ||.||.+|. ||+|| +.|+.-+|.--  |.....+..+.||+| ||+|++
T Consensus       580 Fs~~aTt~~G~-iavgs~~G~-IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  580 FSCFATTEDGY-IAVGSNKGD-IRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             ceEEEecCCce-EEEEeCCCc-EEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            78888888875 788999999 99999 45555455432  444555688999999 555654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.25  E-value=0.0068  Score=55.00  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=62.8

Q ss_pred             CCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceE
Q 020784          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWL  315 (321)
Q Consensus       236 s~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~l  315 (321)
                      +....+.+|.....+...+.||-+.++.|+|+||++++.|+-.|.. |||=.+..--.+.+|+-||...+..++.-..|+
T Consensus       129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclGH~eFVS~isl~~~~~  207 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLGHKEFVSTISLTDNYL  207 (390)
T ss_pred             CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccccHhheeeeeeccCce
Confidence            3344555565444555667899999999999999999999999999 999999988889999999998887666444443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.22  E-value=0.028  Score=53.17  Aligned_cols=178  Identities=8%  Similarity=0.014  Sum_probs=100.8

Q ss_pred             EEEEEecCCCeEEEEeCCCCCCCCC--CcEEEEeCCCCcEEEEEeeCCceeEEEEeC--CeEEEEEC--C--EEEEEEcC
Q 020784          131 GVVEMLFRCNILALVGGGPDPQYPL--NKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE--Q--KIFVYNFA  202 (321)
Q Consensus       131 ~~v~~~~~~~~~~~~sg~~~~~~~d--~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~--~--~I~iwd~~  202 (321)
                      ..-.|++++..++...=.     ..  -.+.++|+++++......+...-..-.|++  ++++.+..  +  .|.++|+.
T Consensus       196 ~~p~ws~~~~~~~y~~f~-----~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFE-----LGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             eccccCcCCCceEEEEEe-----cCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            334566666665544311     11  358999999887655555555444555666  45655543  3  78888998


Q ss_pred             CcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC
Q 020784          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (321)
Q Consensus       203 ~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg  280 (321)
                      ..+. ..+.........-.+  .+||..+++..+..|.=.|  .+...+....+....+.-..-.|||||++||..+..+
T Consensus       271 ~~~~-~~Lt~~~gi~~~Ps~--spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         271 GKNL-PRLTNGFGINTSPSW--SPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             CCcc-eecccCCccccCccC--CCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence            7764 335443333333344  4556777776677775555  5555555444443433333778999999999887543


Q ss_pred             c--EEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          281 T--LVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       281 t--~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      .  .|-+.|+.++.-++.+........-.+++++++|.
T Consensus       348 g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         348 GQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM  385 (425)
T ss_pred             CceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence            2  25666666665444443222222224445554443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.0092  Score=56.28  Aligned_cols=131  Identities=18%  Similarity=0.308  Sum_probs=90.2

Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC---------eEEEE-ECCEEEEEEcCCc-E-EEEEEeccC--CCCceE
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIVV-LEQKIFVYNFADL-K-LLHQIETIA--NPKGLC  220 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------~~~~~-~~~~I~iwd~~~~-~-~~~~l~~~~--~~~~~~  220 (321)
                      .+.+.-.|++.|+.+.+..++..|.-+.+.++         ..+++ .++.|+-||.+-. + .+...+.+.  ......
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs  434 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS  434 (644)
T ss_pred             cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence            47788999999999999998887766666654         23344 4579999998632 1 222222221  122344


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      |+...++|.+++  |+.+|.|+++|......+ .|.+...+|..|..+.||++++..+ +.. +-+-++.
T Consensus       435 c~aTT~sG~Ivv--gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty-LlLi~t~  500 (644)
T KOG2395|consen  435 CFATTESGYIVV--GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY-LLLIDTL  500 (644)
T ss_pred             eeeecCCceEEE--eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE-EEEEEEe
Confidence            556666665554  899999999987554443 6888999999999999999876554 656 5566653

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.10  E-value=0.13  Score=50.40  Aligned_cols=146  Identities=10%  Similarity=0.016  Sum_probs=80.0

Q ss_pred             CcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeC------CC
Q 020784          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG------VG  227 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~------~d  227 (321)
                      +.+.+.|.++.+...++........+.+.++  .+++..      ||.+.+..+..+...... .+..|...      .+
T Consensus       215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTs------yNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkd  287 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTC------YNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKA  287 (635)
T ss_pred             EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEec------cCcccCcceeeeccccCc-eEEEEchHHHHHhhhC
Confidence            4456666666666666655555555555544  233322      122222222222221111 12222221      13


Q ss_pred             ceEEEeecCCCCcEEEEeeCC-----cceEEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCc---------
Q 020784          228 SLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT---------  292 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~-----~~~~~l~~H~~~V~~vafspdg~~las~S~-Dgt~IrIWd~~tg~---------  292 (321)
                      +.+..+ +  ++.|.+.|...     ..+..+-.=...+..|+++|||+++..++. +.+ |-|.|+.+.+         
T Consensus       288 GK~~~V-~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        288 GKFKTI-G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCEEEE-C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCc
Confidence            333332 2  45788888766     233333334566889999999998777655 777 9999999866         


Q ss_pred             ---EEEEEeCCCcceeEEEeecC
Q 020784          293 ---LLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       293 ---~i~~~~~g~~~~~~~~s~d~  312 (321)
                         ++.+...|-......|..+|
T Consensus       364 ~~~vvaevevGlGPLHTaFDg~G  386 (635)
T PRK02888        364 RDAVVAEPELGLGPLHTAFDGRG  386 (635)
T ss_pred             cceEEEeeccCCCcceEEECCCC
Confidence               36666666665555554444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.00  E-value=0.2  Score=43.48  Aligned_cols=146  Identities=14%  Similarity=0.025  Sum_probs=90.2

Q ss_pred             EEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEe--CCeEEEEECCEEEEEEcCCcEEEEEE
Q 020784          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR--RDRIIVVLEQKIFVYNFADLKLLHQI  210 (321)
Q Consensus       133 v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~I~iwd~~~~~~~~~l  210 (321)
                      ..|......+.++.-      ..+.|..||..++... .+.... ...+.+.  ...++++..+.+.++|..+++....+
T Consensus         5 p~~d~~~g~l~~~D~------~~~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDI------PGGRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEETTTTEEEEEET------TTTEEEEEETTTTEEE-EEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred             eEEECCCCEEEEEEc------CCCEEEEEECCCCeEE-EEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence            345553444444442      3588999999887653 344444 6666666  45677777788888899887654444


Q ss_pred             ec--cC-CCCceEEEeeCCCceEEEeecCCC--------CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEE-EEeC
Q 020784          211 ET--IA-NPKGLCAVSQGVGSLVLVCPGLQK--------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-TSST  278 (321)
Q Consensus       211 ~~--~~-~~~~~~~~s~~~d~~~la~sGs~d--------g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~la-s~S~  278 (321)
                      ..  .. .......+..++++.+.+. ....        |.|..++.. +....+...-...+.|+|+|+|+.|. +-+.
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t-~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVT-DSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEE-EECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEE-ecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence            43  12 2344556666777776653 2111        446556655 44444444566789999999998665 5566


Q ss_pred             CCcEEEEEEcC
Q 020784          279 KGTLVRIFNTL  289 (321)
Q Consensus       279 Dgt~IrIWd~~  289 (321)
                      .+. |..+++.
T Consensus       155 ~~~-i~~~~~~  164 (246)
T PF08450_consen  155 NGR-IWRFDLD  164 (246)
T ss_dssp             TTE-EEEEEEE
T ss_pred             cce-eEEEecc
Confidence            666 8888885

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.89  E-value=0.0031  Score=39.90  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=30.7

Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 020784          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       258 ~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i  294 (321)
                      ...|.+++|+|...+||.|+.||. |.|+.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence            456999999999999999999999 999998 66654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.88  E-value=0.007  Score=58.72  Aligned_cols=110  Identities=14%  Similarity=0.258  Sum_probs=73.6

Q ss_pred             eeEEEEeCCeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc---eEE
Q 020784          178 VRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKF  253 (321)
Q Consensus       178 v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~---~~~  253 (321)
                      .++++-..+.++++++ +.+.+|+-..++. ++++.......++..+.+.+..++| .|+..|.|.|+-++...   ...
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvA-agt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVA-AGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhh-hhcCCceEEeehhhccCCCccee
Confidence            4455666677777765 7999999766544 3333321223334444444445666 49999999996655321   111


Q ss_pred             ---e-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          254 ---I-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       254 ---l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                         + +.|...|++++|++||..|-+|-..|+ |..-.+.+
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk-v~~~~L~s  155 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK-VVLTELDS  155 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCce-EEEEEech
Confidence               1 237889999999999999999998998 87777776

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.83  E-value=0.11  Score=49.29  Aligned_cols=121  Identities=11%  Similarity=0.054  Sum_probs=73.8

Q ss_pred             EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeCCcceEEeeccccceeEEEECCCCCE
Q 020784          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQL  272 (321)
Q Consensus       195 ~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~l~~H~~~V~~vafspdg~~  272 (321)
                      .+.++++.+++..+.+.. ......-.|++  |+..|+++...||...|  .|+..+.+..+..-.+.-..=.|+|||++
T Consensus       219 ~i~~~~l~~g~~~~i~~~-~g~~~~P~fsp--DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~  295 (425)
T COG0823         219 RIYYLDLNTGKRPVILNF-NGNNGAPAFSP--DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSK  295 (425)
T ss_pred             eEEEEeccCCccceeecc-CCccCCccCCC--CCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCE
Confidence            699999988766555442 22233445555  55777777888887666  56666655444433333336678999998


Q ss_pred             EEEEeCCCcEEEEE--EcCCCcEEEEEeCCCc-ceeEEEeecCceEEEee
Q 020784          273 LATSSTKGTLVRIF--NTLDGTLLQEECCPSI-SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       273 las~S~Dgt~IrIW--d~~tg~~i~~~~~g~~-~~~~~~s~d~~~la~~~  319 (321)
                      ++=.|+.+..-+||  |...+.. ..+..... ...-..++||++|+...
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            88776644335666  4444443 33322222 22447789999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.83  E-value=0.15  Score=44.70  Aligned_cols=153  Identities=12%  Similarity=0.074  Sum_probs=81.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeec------CCceEEEEEecC------CCeEEEEeCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFR------CNILALVGGGPDPQY  153 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~------~~~v~~v~~~~~------~~~~~~~sg~~~~~~  153 (321)
                      .=+-++||||+.+||.+.. +.|+|||+.... ++...-.+      ...|..+.+..-      ...+.++.       
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-------  116 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-------  116 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-------
Confidence            4567999999999998887 458899986432 22221100      123333333211      12333443       


Q ss_pred             CCCcEEEEeCC-----CCcEEEEEeeC----CceeEEEEeCC-e-EEEEEC------------CEEEEEEcCCcEEEEE-
Q 020784          154 PLNKVMIWDDH-----QSRCIGELSFR----SEVRSVKLRRD-R-IIVVLE------------QKIFVYNFADLKLLHQ-  209 (321)
Q Consensus       154 ~d~~v~iWD~~-----~~~~~~~~~~~----~~v~~v~~~~~-~-~~~~~~------------~~I~iwd~~~~~~~~~-  209 (321)
                      .+|.++-+-+.     ..+....+.+.    ..|.++.++++ + +++++.            ..+..|.+-++..-.+ 
T Consensus       117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence            34666666542     23344455543    35888888876 3 333321            1355665532111100 


Q ss_pred             --------------------E-----ec-cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC
Q 020784          210 --------------------I-----ET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (321)
Q Consensus       210 --------------------l-----~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~  248 (321)
                                          +     .. ......+..++-.||+.+||+ -+.+|.|.+|++-.
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~-ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLAC-IHFSGSLSLWEIPS  260 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEE-EEcCCeEEEEecCc
Confidence                                0     00 111223444555567788885 89999999999754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.83  E-value=0.017  Score=51.12  Aligned_cols=158  Identities=13%  Similarity=0.140  Sum_probs=91.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEe----eee---cCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR----DFE---RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~----~~~---~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      ...|+--|++++|+.|...+.++.+=.|-+|+++-....+..    ...   -...|...++++..+.+..-+.      
T Consensus       168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs------  241 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS------  241 (460)
T ss_pred             cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec------
Confidence            356778899999999999999987777889998644322211    100   0123445555554333333221      


Q ss_pred             CCCcEEEEeCCCCcE------EEEEee-----------CCceeEEEEeCCeEEEEE-C-CEEEEEEcC-CcEEEEEEecc
Q 020784          154 PLNKVMIWDDHQSRC------IGELSF-----------RSEVRSVKLRRDRIIVVL-E-QKIFVYNFA-DLKLLHQIETI  213 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~------~~~~~~-----------~~~v~~v~~~~~~~~~~~-~-~~I~iwd~~-~~~~~~~l~~~  213 (321)
                      +.|+|++-|++....      +.+...           -..|..+.|+++..++.. + -+|+|||.+ ...+++++..|
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence            469999999874321      111111           124666888887644444 4 499999995 35667776443


Q ss_pred             CCC-------------CceEEEeeCCCceEEEeecCCCCcEEEEe
Q 020784          214 ANP-------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (321)
Q Consensus       214 ~~~-------------~~~~~~s~~~d~~~la~sGs~dg~V~i~d  245 (321)
                      ..-             ..-..+++.+|..-+. +|+.....-|+-
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~-sgsy~NNfgiyp  365 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVL-SGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCccccc-ccccccceeeec
Confidence            210             1123345555544444 577766666543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.33  Score=42.20  Aligned_cols=148  Identities=9%  Similarity=0.024  Sum_probs=89.2

Q ss_pred             CCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC
Q 020784           97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (321)
Q Consensus        97 g~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (321)
                      .+++..|+..+ +.--|.++++..+...+  +..+.+-++. -++.+++..       ..+.+.+-++++|..+..+..-
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GC-------y~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGC-------YSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEE-------ccCcEEEEEecchhheeeeeeh
Confidence            45677788755 44667788877766665  5556554443 355555554       4588999999999877777665


Q ss_pred             CceeE---EEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce
Q 020784          176 SEVRS---VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (321)
Q Consensus       176 ~~v~~---v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~  251 (321)
                      ..|..   +++....+.+.+ +++.+..|.++...+.+.+-.......-++.+. ++.+.++  ...|.|.--..+..+.
T Consensus        93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~sly~a--~t~G~vlavt~~~~~~  169 (354)
T KOG4649|consen   93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DGSLYAA--ITAGAVLAVTKNPYSS  169 (354)
T ss_pred             hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC-CceEEEE--eccceEEEEccCCCCc
Confidence            55443   445555666665 468999999998888887655443333445443 3334432  3344444333333333


Q ss_pred             EEeecc
Q 020784          252 KFIMAH  257 (321)
Q Consensus       252 ~~l~~H  257 (321)
                      +++-.|
T Consensus       170 ~~~w~~  175 (354)
T KOG4649|consen  170 TEFWAA  175 (354)
T ss_pred             ceehhh
Confidence            444444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.67  E-value=0.61  Score=45.17  Aligned_cols=191  Identities=14%  Similarity=0.178  Sum_probs=102.2

Q ss_pred             CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCce----EEEE---EecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcE
Q 020784           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI----GVVE---MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (321)
Q Consensus        96 dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v----~~v~---~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~  168 (321)
                      +|+.++...+..+.-.|..+++.+...... ....    ..+.   ...+...+.+.+       .++.|.-+|.++|+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~g~~~~~~~~V~v~~-------~~g~v~AlD~~TG~~  132 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPK-LPADRGCCDVVNRGVAYWDPRKVFFGT-------FDGRLVALDAETGKQ  132 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCC-CCccccccccccCCcEEccCCeEEEec-------CCCeEEEEECCCCCE
Confidence            444444333444666677777776555431 1100    0000   011214444444       468999999999998


Q ss_pred             EEEEeeCCc------ee-EEEEeCCeEEEEE----------CCEEEEEEcCCcEEEEEEeccCCCC--------------
Q 020784          169 IGELSFRSE------VR-SVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPK--------------  217 (321)
Q Consensus       169 ~~~~~~~~~------v~-~v~~~~~~~~~~~----------~~~I~iwd~~~~~~~~~l~~~~~~~--------------  217 (321)
                      +-.++....      +. +..+....+++..          ++.+..+|..+++.+-+++......              
T Consensus       133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~  212 (488)
T cd00216         133 VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG  212 (488)
T ss_pred             eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence            877765443      21 2233445555543          3578889999999988876532110              


Q ss_pred             -------ceEEEeeCCCceEEEeecCCCC------------------cEEEEeeCCcceE-Eee--cccc----ceeEEE
Q 020784          218 -------GLCAVSQGVGSLVLVCPGLQKG------------------QVRVEHYASKRTK-FIM--AHDS----RIACFA  265 (321)
Q Consensus       218 -------~~~~~s~~~d~~~la~sGs~dg------------------~V~i~d~~~~~~~-~l~--~H~~----~V~~va  265 (321)
                             ...++... ++.+++  |+.++                  .|.-.|..++... .++  .|..    ......
T Consensus       213 ~~g~~vw~~pa~d~~-~g~V~v--g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~  289 (488)
T cd00216         213 PGGGTSWASPTYDPK-TNLVYV--GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS  289 (488)
T ss_pred             CCCCCccCCeeEeCC-CCEEEE--ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence                   01111111 223333  44444                  4555777766654 221  2211    111111


Q ss_pred             EC----CCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          266 LT----QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       266 fs----pdg~---~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      +.    -+|.   .++.++.+|. +..+|.++|+.+-+++
T Consensus       290 ~~~~~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~  328 (488)
T cd00216         290 LADIKPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARP  328 (488)
T ss_pred             EEeccccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeE
Confidence            11    1343   5777888999 9999999999987664

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.66  E-value=0.091  Score=39.63  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCceeEEEEe-CCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEE
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      .|..||||+-.  +.+.++.....|.+++-. ..+++-+. .++|.+|+-  .+.+..++....+.....+..++|+..-
T Consensus        23 ~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~e   98 (111)
T PF14783_consen   23 DDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPE   98 (111)
T ss_pred             CCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceE
Confidence            68999999754  678888888888887754 45555555 469999975  3444556665555556666666665433


Q ss_pred             EeecCCCCcEEE
Q 020784          232 VCPGLQKGQVRV  243 (321)
Q Consensus       232 a~sGs~dg~V~i  243 (321)
                      .+.|-.+|.|.+
T Consensus        99 LI~GwsnGkve~  110 (111)
T PF14783_consen   99 LIVGWSNGKVEV  110 (111)
T ss_pred             EEEEecCCeEEe
Confidence            335888888764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.65  E-value=0.54  Score=43.39  Aligned_cols=229  Identities=10%  Similarity=0.015  Sum_probs=122.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeec-----------------CCceEEEEEecCCCeEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-----------------GGGIGVVEMLFRCNILALVGGG  148 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~-----------------~~~v~~v~~~~~~~~~~~~sg~  148 (321)
                      ..+....|+|||++||-..++.+.+++..+... ...+...                 -+.-..+-|++++..++...-+
T Consensus        43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cccccceeecCCCeeEEEecCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            467889999999999999988888887765532 2222210                 0122456688888888765422


Q ss_pred             CCC---------------------------CC--CCCcEEEEeCCCCcEEE-EEe-----eCCceeEEEEeCCe--EEEE
Q 020784          149 PDP---------------------------QY--PLNKVMIWDDHQSRCIG-ELS-----FRSEVRSVKLRRDR--IIVV  191 (321)
Q Consensus       149 ~~~---------------------------~~--~d~~v~iWD~~~~~~~~-~~~-----~~~~v~~v~~~~~~--~~~~  191 (321)
                      +..                           ..  ..-.+.|+|+.+++... ...     ....+..+.|.++.  +++.
T Consensus       122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~  201 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ  201 (353)
T ss_dssp             -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred             CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence            100                           00  00125567777665421 111     12246678886653  3433


Q ss_pred             E----CC--EEEEEEcCCcEEEEEEec-cCCCC---ceEEEe-eCCCceEEEeecCCCCcEEE--EeeCCcceEEeeccc
Q 020784          192 L----EQ--KIFVYNFADLKLLHQIET-IANPK---GLCAVS-QGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHD  258 (321)
Q Consensus       192 ~----~~--~I~iwd~~~~~~~~~l~~-~~~~~---~~~~~s-~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~l~~H~  258 (321)
                      .    .+  .+.+.|..+++....+.. ....+   ....+. .+++ .++-. ...+|.-.|  .+...+....+....
T Consensus       202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~-~~l~~-s~~~G~~hly~~~~~~~~~~~lT~G~  279 (353)
T PF00930_consen  202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN-EFLWI-SERDGYRHLYLYDLDGGKPRQLTSGD  279 (353)
T ss_dssp             EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS-EEEEE-EETTSSEEEEEEETTSSEEEESS-SS
T ss_pred             EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC-EEEEE-EEcCCCcEEEEEcccccceeccccCc
Confidence            2    23  566777765543222222 22222   233333 3433 33333 337776666  566666666777777


Q ss_pred             cceeE-EEECCCCCEE-EEEeCCC--c-EEEEEEcCCCcEEEEEeCCCcce-eEEEeecCceEEE
Q 020784          259 SRIAC-FALTQDGQLL-ATSSTKG--T-LVRIFNTLDGTLLQEECCPSISA-QSGLWLSSAWLRV  317 (321)
Q Consensus       259 ~~V~~-vafspdg~~l-as~S~Dg--t-~IrIWd~~tg~~i~~~~~g~~~~-~~~~s~d~~~la~  317 (321)
                      -.|+. +.+++++..| .+|..++  . .|..-++.++..+..+..+.... ...||+|++|++.
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            77865 6778886643 3555422  2 14444555244556665555554 7799999999865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.60  E-value=0.35  Score=45.39  Aligned_cols=195  Identities=18%  Similarity=0.277  Sum_probs=96.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeec-------CCceEEEEEe---cCCC----eEEEEe
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-------GGGIGVVEML---FRCN----ILALVG  146 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~-------~~~v~~v~~~---~~~~----~~~~~s  146 (321)
                      +...++|++++.|.=| ++|.|.++| +.|.|+.-...++......       ...+..++|.   ...+    ...+++
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            4456899999998545 899999866 7799997777766644421       1234455553   1111    222222


Q ss_pred             CCCCCCCCCCcEEEEeCC--C-CcEEEEE-----eeCCceeEEE-EeCC-----------------------eEEEEECC
Q 020784          147 GGPDPQYPLNKVMIWDDH--Q-SRCIGEL-----SFRSEVRSVK-LRRD-----------------------RIIVVLEQ  194 (321)
Q Consensus       147 g~~~~~~~d~~v~iWD~~--~-~~~~~~~-----~~~~~v~~v~-~~~~-----------------------~~~~~~~~  194 (321)
                       .     +.|.+.+|.+.  . +.....+     .....|..+. ++.+                       .++++++.
T Consensus       162 -T-----n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  162 -T-----NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             -E-----TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             -e-----CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence             1     45889988754  1 2222111     2334555544 3221                       45666788


Q ss_pred             EEEEEEcCCcEEEEEEeccCCCCc--eEEEee---CCCceEEEeecCCCCcEEEEeeCC-cceEEeec----cccceeEE
Q 020784          195 KIFVYNFADLKLLHQIETIANPKG--LCAVSQ---GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA----HDSRIACF  264 (321)
Q Consensus       195 ~I~iwd~~~~~~~~~l~~~~~~~~--~~~~s~---~~d~~~la~sGs~dg~V~i~d~~~-~~~~~l~~----H~~~V~~v  264 (321)
                      .||++...+.+..++...  .+..  .+++..   ...+..|++ =..+|.|+++.+-. +.+..++-    +...+...
T Consensus       236 ~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~-l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVC-LFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             EEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEE-EETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             ceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEE-EECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            999999988777666542  2222  222321   112233332 47889999988653 34444433    33456778


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEEc
Q 020784          265 ALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       265 afspdg~~las~S~Dgt~IrIWd~  288 (321)
                      +|+++|..|.-.|.. . +.+|.+
T Consensus       313 sis~~Gdi~~~~gps-E-~~l~sv  334 (395)
T PF08596_consen  313 SISRNGDIFYWTGPS-E-IQLFSV  334 (395)
T ss_dssp             EE-TTS-EEEE-SSS-E-EEEEEE
T ss_pred             EECCCCCEEEEeCcc-c-EEEEEE
Confidence            889999988766533 3 455544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.58  E-value=0.21  Score=51.81  Aligned_cols=180  Identities=12%  Similarity=0.121  Sum_probs=103.2

Q ss_pred             CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEECCEEEEEEcCCcE
Q 020784          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLEQKIFVYNFADLK  205 (321)
Q Consensus       128 ~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~I~iwd~~~~~  205 (321)
                      +.|..+.+.-+.+.++++.       ..|.|.+-|..+......=.....|.+.+|+++.  +++++....-+....+..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~-------~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVIT-------ALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             cceEEEEEecccceEEEEe-------cCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence            4566667777888888877       4588888888876643333345678899999875  444555333333222111


Q ss_pred             EEE------------------------EEeccC-------------------CCCceEEEeeCCCceEEEeec----CCC
Q 020784          206 LLH------------------------QIETIA-------------------NPKGLCAVSQGVGSLVLVCPG----LQK  238 (321)
Q Consensus       206 ~~~------------------------~l~~~~-------------------~~~~~~~~s~~~d~~~la~sG----s~d  238 (321)
                      ++.                        .|.+..                   ....-..+++.+||.++|+++    ..-
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            111                        111100                   001123488999999998743    222


Q ss_pred             CcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEE---eCCCcEEEEEEcCCCcEEEEEeCC---Cc--ceeEEEe
Q 020784          239 GQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATS---STKGTLVRIFNTLDGTLLQEECCP---SI--SAQSGLW  309 (321)
Q Consensus       239 g~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~---S~Dgt~IrIWd~~tg~~i~~~~~g---~~--~~~~~~s  309 (321)
                      ..|+|||.. +.+. +-..-.+-=.+++|-|.|.++|+-   ..|++ |.+|.- +|-.-..|...   ..  ...+.+.
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFER-NGLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEec-CCccccccccCCcccccchheeeec
Confidence            689999976 3322 222223334689999999999984   33667 888873 33332322211   11  1234556


Q ss_pred             ecCceEEE
Q 020784          310 LSSAWLRV  317 (321)
Q Consensus       310 ~d~~~la~  317 (321)
                      .++..||+
T Consensus       299 s~sdiLAv  306 (1265)
T KOG1920|consen  299 SNSDILAV  306 (1265)
T ss_pred             CCCCceee
Confidence            66677776

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.57  E-value=0.56  Score=42.60  Aligned_cols=174  Identities=15%  Similarity=0.252  Sum_probs=94.2

Q ss_pred             CCEEEEEcC---------C-c-EEEEEecCC-----ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           97 HGCFAAGTD---------H-G-FRIYNCDPF-----REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        97 g~~lasg~~---------~-g-v~vw~~~~~-----~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      -.+|+.|..         . | +.++++...     +.....+....+.+..++.. .+.+++.++         ++|.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~g---------~~l~v  111 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAVG---------NKLYV  111 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEET---------TEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEeec---------CEEEE
Confidence            467887763         1 5 669998774     32222222136777777654 444333333         78999


Q ss_pred             EeCCCCc-EEEEEee--CCceeEEEEeCCeEEEEEC-CEEEEEEcC-CcEEEEEEeccCCCCceEEE--eeCCCceEEEe
Q 020784          161 WDDHQSR-CIGELSF--RSEVRSVKLRRDRIIVVLE-QKIFVYNFA-DLKLLHQIETIANPKGLCAV--SQGVGSLVLVC  233 (321)
Q Consensus       161 WD~~~~~-~~~~~~~--~~~v~~v~~~~~~~~~~~~-~~I~iwd~~-~~~~~~~l~~~~~~~~~~~~--s~~~d~~~la~  233 (321)
                      |++...+ .......  ...+.++...++.++++.. +.+.++... ..+.+..+.....+..+.++  -.+.+ .+++ 
T Consensus       112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~-  189 (321)
T PF03178_consen  112 YDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV-  189 (321)
T ss_dssp             EEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE-
T ss_pred             EEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE-
Confidence            9998877 6554444  3467888888887777754 556655442 23333444433334444443  33443 4444 


Q ss_pred             ecCCCCcEEEEeeCC-------c--ceE-Eeecc-ccceeEE---EECC--CCC------EEEEEeCCCcEEE
Q 020784          234 PGLQKGQVRVEHYAS-------K--RTK-FIMAH-DSRIACF---ALTQ--DGQ------LLATSSTKGTLVR  284 (321)
Q Consensus       234 sGs~dg~V~i~d~~~-------~--~~~-~l~~H-~~~V~~v---afsp--dg~------~las~S~Dgt~Ir  284 (321)
                       ++.+|.+.++.+..       +  .+. ...-| ...|+++   ++.|  .+.      .++-++.+|. |-
T Consensus       190 -~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~-Ig  260 (321)
T PF03178_consen  190 -GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS-IG  260 (321)
T ss_dssp             -EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred             -EcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCE-EE
Confidence             79999999965542       1  222 22223 4557777   5555  222      3666777888 54

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.56  E-value=0.13  Score=48.95  Aligned_cols=133  Identities=13%  Similarity=0.042  Sum_probs=76.4

Q ss_pred             CCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC----------
Q 020784           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----------  166 (321)
Q Consensus        97 g~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~----------  166 (321)
                      |.+|+..+++.+.+||+++.+.+.....   ..+..|.|+.+++.+++++        +.++.|++.+..          
T Consensus       117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t--------~~~i~il~~~~~~~~~~~~~g~  185 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVT--------KDSIYILKYNLEAVAAIPEEGV  185 (443)
T ss_dssp             SSSEEEEETTEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE---------S-SEEEEEE-HHHHHHBTTTB-
T ss_pred             CcEEEEECCCCEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEe--------CCeEEEEEecchhcccccccCc
Confidence            8888888888899999999988766663   4478999999999999987        467888875544          


Q ss_pred             --cEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEE
Q 020784          167 --RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (321)
Q Consensus       167 --~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~  244 (321)
                        ......+....|.+..|..+-++-.+.+.|+.+-  +|+. .++..-..+..++.+.+.. +.+.++  +.|+.|..+
T Consensus       186 e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~~lkYl~--~Ge~-~~i~~ld~~~yllgy~~~~-~~ly~~--Dr~~~v~~~  259 (443)
T PF04053_consen  186 EDAFELIHEISERIKSGCWVEDCFIYTTSNHLKYLV--NGET-GIIAHLDKPLYLLGYLPKE-NRLYLI--DRDGNVISY  259 (443)
T ss_dssp             GGGEEEEEEE-S--SEEEEETTEEEEE-TTEEEEEE--TTEE-EEEEE-SS--EEEEEETTT-TEEEEE---TT--EEEE
T ss_pred             hhceEEEEEecceeEEEEEEcCEEEEEcCCeEEEEE--cCCc-ceEEEcCCceEEEEEEccC-CEEEEE--ECCCCEEEE
Confidence              2222222366899999999966666777888733  3332 2333334566677776643 244442  667676665


Q ss_pred             ee
Q 020784          245 HY  246 (321)
Q Consensus       245 d~  246 (321)
                      .+
T Consensus       260 ~l  261 (443)
T PF04053_consen  260 EL  261 (443)
T ss_dssp             E-
T ss_pred             EE
Confidence            43

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.67  Score=43.33  Aligned_cols=207  Identities=11%  Similarity=0.076  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCEEE-EEc-CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           88 LLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        88 V~~v~fs~dg~~la-sg~-~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      -..++++++|..+. +.. .+.|.+.|..+.+.......  +..-..+.+.+++..+.++..+.    .++++-+.|..+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t  149 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAAT  149 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--ccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCC
Confidence            34688899888544 333 47788999777766555443  22344567777887777666431    258899999998


Q ss_pred             CcEEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEE-E----EeccCCCCceEEEeeCCCceEEEeecC
Q 020784          166 SRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH-Q----IETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~-~----l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      +..+...........+.+.++  .++++.  ++.|.+.|.......+ .    +..+..+ ....+.+++...+++.-++
T Consensus       150 ~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         150 NKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             CeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCC-ceEEECCCCCEEEEEeccC
Confidence            888877544444577888765  455554  5799999987766553 1    1111111 2445566555455554333


Q ss_pred             CCCcEEEEeeCCcceEEe--eccccceeEEEECCCCCEEEEEeCC-CcEEEEEEcCCCcEEEEEeCCCc
Q 020784          237 QKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l--~~H~~~V~~vafspdg~~las~S~D-gt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      .++.+...|...+.+...  ..-......++++|+|..+-..... ++ +.+-|..+.++...+..+..
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~  296 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNE  296 (381)
T ss_pred             CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeeccccc
Confidence            346787777776655433  1111156789999999988777444 66 99999999998887766555

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.56  E-value=0.13  Score=38.85  Aligned_cols=89  Identities=17%  Similarity=0.228  Sum_probs=53.1

Q ss_pred             CeEEEEECC-EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEE
Q 020784          186 DRIIVVLEQ-KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACF  264 (321)
Q Consensus       186 ~~~~~~~~~-~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~v  264 (321)
                      +.+++++++ .||+|+-.  +++..+.......   .+..-.. ..+++ |..+|+|-+++...+. -..+ -+..++++
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~---~L~~~~~-~~F~Y-~l~NGTVGvY~~~~Rl-WRiK-SK~~~~~~   86 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITETDKVT---SLCSLGG-GRFAY-ALANGTVGVYDRSQRL-WRIK-SKNQVTSM   86 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecccceE---EEEEcCC-CEEEE-EecCCEEEEEeCccee-eeec-cCCCeEEE
Confidence            357777654 99999854  5667776654433   3333333 34665 8999999998754332 2222 22336666


Q ss_pred             EEC-CC--C-CEEEEEeCCCcEEE
Q 020784          265 ALT-QD--G-QLLATSSTKGTLVR  284 (321)
Q Consensus       265 afs-pd--g-~~las~S~Dgt~Ir  284 (321)
                      ++. -+  | .-|++|-.+|. |-
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGk-ve  109 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGK-VE  109 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCe-EE
Confidence            554 33  3 35888877887 53

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.44  E-value=0.26  Score=42.85  Aligned_cols=105  Identities=10%  Similarity=0.001  Sum_probs=67.2

Q ss_pred             CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCE
Q 020784          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQL  272 (321)
Q Consensus       194 ~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~  272 (321)
                      +.+.--|..+++++..-....... .-++-. +  .+++. |...|.+++.+.+++. .-.+..-...=..-...+++.+
T Consensus        33 ~~~~avd~~sG~~~We~ilg~RiE-~sa~vv-g--dfVV~-GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~gl  107 (354)
T KOG4649|consen   33 GIVIAVDPQSGNLIWEAILGVRIE-CSAIVV-G--DFVVL-GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGL  107 (354)
T ss_pred             ceEEEecCCCCcEEeehhhCceee-eeeEEE-C--CEEEE-EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCce
Confidence            456666666666654332221111 112222 2  23443 8999999998888874 4444433332223345688999


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce
Q 020784          273 LATSSTKGTLVRIFNTLDGTLLQEECCPSISA  304 (321)
Q Consensus       273 las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~  304 (321)
                      +-.||.|++ ...-|.++..++...+.|....
T Consensus       108 Iycgshd~~-~yalD~~~~~cVykskcgG~~f  138 (354)
T KOG4649|consen  108 IYCGSHDGN-FYALDPKTYGCVYKSKCGGGTF  138 (354)
T ss_pred             EEEecCCCc-EEEecccccceEEecccCCcee
Confidence            999999999 9999999999999887766543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.051  Score=50.35  Aligned_cols=155  Identities=12%  Similarity=0.126  Sum_probs=103.7

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEe----eCCceeEEEEeCCeEEEEE----CCEEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL----EQKIF  197 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~----~~~~v~~v~~~~~~~~~~~----~~~I~  197 (321)
                      |...|..|... -.+.+..++       -||.+|.|.-..-..+..+.    +-..+.+++.+.++...++    +..+|
T Consensus         8 hrd~i~hv~~t-ka~fiiqAS-------lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~K   79 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQAS-------LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVK   79 (558)
T ss_pred             ccceeeeEeee-hhheEEeee-------cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCccccee
Confidence            45556555432 244555555       68999999754322222222    1235666777776655554    56999


Q ss_pred             EEEcCCcEEEEEEeccCCCCceEEEeeCCCc-eEEEeecCCCCcEEEEeeCCc--c-eEEeeccccceeEEEECCCCCEE
Q 020784          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEHYASK--R-TKFIMAHDSRIACFALTQDGQLL  273 (321)
Q Consensus       198 iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~-~~la~sGs~dg~V~i~d~~~~--~-~~~l~~H~~~V~~vafspdg~~l  273 (321)
                      ++|+.+...+.-++...-|..++.+...+|. ..+|++-..+|.+.|+|-...  + ...-+-|.++|.++.+++.+..+
T Consensus        80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence            9999887777666665555556555444432 467777778889999775432  2 23445699999999999999999


Q ss_pred             EEEeCCCcEEEEEEcC
Q 020784          274 ATSSTKGTLVRIFNTL  289 (321)
Q Consensus       274 as~S~Dgt~IrIWd~~  289 (321)
                      +|....|. |.-|...
T Consensus       160 vSiD~~gm-VEyWs~e  174 (558)
T KOG0882|consen  160 VSIDISGM-VEYWSAE  174 (558)
T ss_pred             eeccccce-eEeecCC
Confidence            98887787 9999887

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.39  E-value=0.81  Score=42.37  Aligned_cols=59  Identities=12%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             eeEEEECCCCCEEEEEeCCC---------------cEEEEEEcCCCcEEEEEe--------CCCc---ceeEEEeecCce
Q 020784          261 IACFALTQDGQLLATSSTKG---------------TLVRIFNTLDGTLLQEEC--------CPSI---SAQSGLWLSSAW  314 (321)
Q Consensus       261 V~~vafspdg~~las~S~Dg---------------t~IrIWd~~tg~~i~~~~--------~g~~---~~~~~~s~d~~~  314 (321)
                      ..-.--++||++||-=+.|.               ..|+||+++.++...-.+        .++.   -...+|++|++|
T Consensus       285 ~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~  364 (386)
T PF14583_consen  285 CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW  364 (386)
T ss_dssp             EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE
T ss_pred             eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE
Confidence            33444469999987633332               147789998877542221        1111   234599999999


Q ss_pred             EEEee
Q 020784          315 LRVLR  319 (321)
Q Consensus       315 la~~~  319 (321)
                      +...+
T Consensus       365 VlF~S  369 (386)
T PF14583_consen  365 VLFRS  369 (386)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            86643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.37  E-value=0.26  Score=49.37  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             EEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee-CCc-eeEEEEeCC--eEEEE-EC-C----EEEEEEc
Q 020784          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-RSE-VRSVKLRRD--RIIVV-LE-Q----KIFVYNF  201 (321)
Q Consensus       132 ~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~-~~~-v~~v~~~~~--~~~~~-~~-~----~I~iwd~  201 (321)
                      .-+++..+..+++++       .+|.|.+.+-. .+.+..++. ... |..+....+  .++.. .+ +    .++||++
T Consensus        28 isc~~s~~~~vvigt-------~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   28 ISCCSSSTGSVVIGT-------ADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             eeEEcCCCceEEEee-------ccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence            334556667777766       56777666532 223244432 223 444544444  33332 22 2    7999999


Q ss_pred             CC------cEEE--EEEecc-----CCCCceEEEeeCCCceEEEeecCCCCcEEEEe--e-CCcceEEee--ccccceeE
Q 020784          202 AD------LKLL--HQIETI-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH--Y-ASKRTKFIM--AHDSRIAC  263 (321)
Q Consensus       202 ~~------~~~~--~~l~~~-----~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d--~-~~~~~~~l~--~H~~~V~~  263 (321)
                      ..      .+++  +.+-++     ..+..+++++.+  -..+|+ |..||.|..+.  . +.+-.+..-  .-..+|+.
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg  176 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG  176 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEE-EecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence            53      2334  122222     233445566554  467775 99999988742  2 222223322  33578999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          264 FALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       264 vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      ++|.-++..+.=+..-.. |.+|.+...
T Consensus       177 L~~~~d~~s~lFv~Tt~~-V~~y~l~gr  203 (933)
T KOG2114|consen  177 LALRSDGKSVLFVATTEQ-VMLYSLSGR  203 (933)
T ss_pred             eEEecCCceeEEEEecce-eEEEEecCC
Confidence            999988876222222444 999999843

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.27  E-value=0.0041  Score=61.84  Aligned_cols=170  Identities=8%  Similarity=0.001  Sum_probs=111.0

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCe---EEEEE-CC-EEEEE
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDR---IIVVL-EQ-KIFVY  199 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~---~~~~~-~~-~I~iw  199 (321)
                      |+....+++++.+.+.+++.+       ..|.|+++++.+|.......++. .|+-+.-+.++   +..++ .. -..+|
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~-------~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGS-------HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cccceeeEEeecCCceEEeee-------ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            456778888888889998877       56999999999998766666554 67777766553   22222 23 67799


Q ss_pred             EcC-CcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEE-eec---cccceeEEEECCCCCEE
Q 020784          200 NFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF-IMA---HDSRIACFALTQDGQLL  273 (321)
Q Consensus       200 d~~-~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~-l~~---H~~~V~~vafspdg~~l  273 (321)
                      ++. .+...++|...    .++-|+...  +.-+ .|.....+.|||.++.. +.+ |.+   -...=++..|||+..++
T Consensus      1173 ~~~s~~~~~Hsf~ed----~~vkFsn~~--q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNSL--QFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             ccccccCcccccccc----ceeehhhhH--HHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            984 56666776543    244555442  2222 25555678889988753 222 221   22233788999999887


Q ss_pred             EEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceE
Q 020784          274 ATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWL  315 (321)
Q Consensus       274 as~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~l  315 (321)
                      .   +||-   +||++..+.++.|.+-+....-.|-++|.-+
T Consensus      1246 l---ndGv---LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1246 L---NDGV---LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEV 1281 (1516)
T ss_pred             e---eCce---eeeeccHHHHhhhhhheecccccccCCCceE
Confidence            6   5766   8999998888887654433333566666443

>smart00320 WD40 WD40 repeats

Probab=96.25  E-value=0.0087  Score=34.13  Aligned_cols=30  Identities=17%  Similarity=0.488  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYN  112 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~  112 (321)
                      .|...|+++.|++++.++++|+.++ +++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566899999999999999998866 77885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.033  Score=53.60  Aligned_cols=92  Identities=13%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceE-EEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIG-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..|.-+.|+|.-.+||.+..+| +.+..+. ..++....+ ++..+. ..+|.++++.++++-       .||+|++-|+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~-------kdG~I~L~Dv   91 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGF-------KDGTIRLHDV   91 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEe-------cCCeEEEEEc
Confidence            3788999999999999999988 6666666 444444443 355555 889999999998876       7899999999


Q ss_pred             CCCcEEEE--EeeCCceeEEEEeCC
Q 020784          164 HQSRCIGE--LSFRSEVRSVKLRRD  186 (321)
Q Consensus       164 ~~~~~~~~--~~~~~~v~~v~~~~~  186 (321)
                      .++..+..  +.....|.++.|.+.
T Consensus        92 e~~~~l~~~~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   92 EKGGRLVSFLFSVETDISKGIWDRI  116 (665)
T ss_pred             cCCCceeccccccccchheeecccc
Confidence            99987776  344456777777643

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.017  Score=58.68  Aligned_cols=71  Identities=18%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             eEEEeecCCCCcEEEEeeCCc--ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          229 LVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~--~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      ..+++ |+..|.|...|+...  +...=..-.++|++++|+.||.+++.|=.+|. |.+||+..++.++.+..+.
T Consensus       100 ~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  100 VPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecC
Confidence            45664 788888887554332  21221223578999999999999999988998 9999999999988876443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.94  E-value=1.5  Score=41.23  Aligned_cols=223  Identities=15%  Similarity=0.110  Sum_probs=98.4

Q ss_pred             CCCEEEEEcCC--cEEEEEecCC--ceeEEeeee----c-CCce---EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           96 DHGCFAAGTDH--GFRIYNCDPF--REIFRRDFE----R-GGGI---GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        96 dg~~lasg~~~--gv~vw~~~~~--~~~~~~~~~----~-~~~v---~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      +.++|+..+-+  .|.|.|+.+.  +-...+...    + ...+   -.+.+.++++.++++=|+.+. -..+.+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G-~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADG-NGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS--S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCC-CCCCcEEEEcC
Confidence            46788877753  3667787532  222222210    0 0111   123445677777666443322 23577888888


Q ss_pred             CCCcEEEEEeeCC--ce--eEEEEeCCe--EEEE---------------------ECCEEEEEEcCCcEEEEEEeccCCC
Q 020784          164 HQSRCIGELSFRS--EV--RSVKLRRDR--IIVV---------------------LEQKIFVYNFADLKLLHQIETIANP  216 (321)
Q Consensus       164 ~~~~~~~~~~~~~--~v--~~v~~~~~~--~~~~---------------------~~~~I~iwd~~~~~~~~~l~~~~~~  216 (321)
                      ++.+.....+...  ..  +.+-+++.+  ++..                     .+.++.+||+.+.+.++++......
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            8877766554322  22  233344332  2211                     1258999999999999999876432


Q ss_pred             C--ceEEEeeCCCceEEEeecCC-CCcE-EEEeeCCc-----ceEEeec-----------------cccceeEEEECCCC
Q 020784          217 K--GLCAVSQGVGSLVLVCPGLQ-KGQV-RVEHYASK-----RTKFIMA-----------------HDSRIACFALTQDG  270 (321)
Q Consensus       217 ~--~~~~~s~~~d~~~la~sGs~-dg~V-~i~d~~~~-----~~~~l~~-----------------H~~~V~~vafspdg  270 (321)
                      .  .-+.+..+++...=. .|.. ...| +++....+     .+..+..                 -..-|+.|.+|.|.
T Consensus       245 ~~pLEvRflH~P~~~~gF-vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGF-VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEE-SSTT--EEE-EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CceEEEEecCCCCccceE-EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence            2  235666666543221 1221 2233 33332221     1112211                 12347999999999


Q ss_pred             CEEEEEeC-CCcEEEEEEcCC---CcEEEEEeCCCcc-----------------eeEEEeecCceEEEeecC
Q 020784          271 QLLATSST-KGTLVRIFNTLD---GTLLQEECCPSIS-----------------AQSGLWLSSAWLRVLRTL  321 (321)
Q Consensus       271 ~~las~S~-Dgt~IrIWd~~t---g~~i~~~~~g~~~-----------------~~~~~s~d~~~la~~~~~  321 (321)
                      ++|-...+ +|. ||-||+..   -+++.+...|...                 .-+++|.||+.|.+..-|
T Consensus       324 rfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL  394 (461)
T PF05694_consen  324 RFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSL  394 (461)
T ss_dssp             -EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE---
T ss_pred             CEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeec
Confidence            88766555 777 99999986   3566666555432                 335899999999886543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.94  E-value=1.1  Score=39.55  Aligned_cols=140  Identities=19%  Similarity=0.260  Sum_probs=81.1

Q ss_pred             CCCCEEEEEcCCcEEEEEe-cCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEE---
Q 020784           95 QDHGCFAAGTDHGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG---  170 (321)
Q Consensus        95 ~dg~~lasg~~~gv~vw~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~---  170 (321)
                      ..++.|+.|.++|+.+++. ...+......   ...|..+.+.++-+.+++.+        |+.+.++|+..-....   
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccceeEee---cceEEEEEEecccCEEEEEc--------CCccEEEEchhhccccccc
Confidence            4578899999999889998 3333322222   34588888888888888776        5889999976544332   


Q ss_pred             ------------EEeeCCceeEEE----E-eCCeEEEEECCEEEEEEcCC----c-EEEEEEeccCCCCceEEEeeCCCc
Q 020784          171 ------------ELSFRSEVRSVK----L-RRDRIIVVLEQKIFVYNFAD----L-KLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       171 ------------~~~~~~~v~~v~----~-~~~~~~~~~~~~I~iwd~~~----~-~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                                  .+.....+...+    . ....++++..++|.+|....    . +.++.+.....+ ..+++.  +  
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~-~~i~~~--~--  148 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP-SSIAFL--G--  148 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc-EEEEEe--C--
Confidence                        111122333333    1 11246666778999988854    2 455666554332 233333  2  


Q ss_pred             eEEEeecCCCCcEEEEeeCCcceE
Q 020784          229 LVLVCPGLQKGQVRVEHYASKRTK  252 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~~~  252 (321)
                      ..+++ |..+ ...+.|+.++...
T Consensus       149 ~~i~v-~~~~-~f~~idl~~~~~~  170 (275)
T PF00780_consen  149 NKICV-GTSK-GFYLIDLNTGSPS  170 (275)
T ss_pred             CEEEE-EeCC-ceEEEecCCCCce
Confidence            34443 5544 4555666544433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.91  E-value=0.91  Score=41.08  Aligned_cols=134  Identities=7%  Similarity=-0.022  Sum_probs=74.9

Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeE-EEEeCCeEEEEECCEEEEEEcCCcEEEEEEecc---CCCCceEEEeeCCCceE
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRS-VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI---ANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~---~~~~~~~~~s~~~d~~~  230 (321)
                      .+.|.-||..+++.. .+...+.+.+ ..++....+++.+..+++++..++..+..+...   ......-..-.++++.+
T Consensus        46 ~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~  124 (307)
T COG3386          46 GGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI  124 (307)
T ss_pred             CCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence            367777877765432 3444444444 345667788888888888888665553333221   11122223333445555


Q ss_pred             EEeecC-----C-----CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          231 LVCPGL-----Q-----KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       231 la~sGs-----~-----dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      -+..-.     .     -|.|+..+-.......+..|-..-+.|||||||+.|-.+-.....|.-|++.
T Consensus       125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            542222     1     1223323322334555666677789999999997776664443337677665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=1.5  Score=40.97  Aligned_cols=176  Identities=15%  Similarity=0.097  Sum_probs=115.6

Q ss_pred             EEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE----CCEEEEEEcCCcEE
Q 020784          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL----EQKIFVYNFADLKL  206 (321)
Q Consensus       133 v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~----~~~I~iwd~~~~~~  206 (321)
                      +.....++.+.....      .++.|.+.|..+...............+.+.++  .++++.    .+++-+.|-.+.+.
T Consensus        79 i~v~~~~~~vyv~~~------~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          79 VAVNPAGNKVYVTTG------DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             eeeCCCCCeEEEecC------CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            344555554444432      358899999888887777766656667777654  566653    35888889888888


Q ss_pred             EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEE-----eeccccceeEEEECCCCCEEEEEeC---
Q 020784          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSST---  278 (321)
Q Consensus       207 ~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~-----l~~H~~~V~~vafspdg~~las~S~---  278 (321)
                      +.++.....+ .-+++.+  ++..+.+.-..+++|.+.+.+...+..     ...-......++++|+|.++-..-.   
T Consensus       153 ~~~~~vG~~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         153 TATIPVGNTP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             EEEEecCCCc-ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            8886655545 3344444  445333335678899998866554442     1222344678999999985544332   


Q ss_pred             CCcEEEEEEcCCCcEEEE-EeCCC-cceeEEEeecCceEEEe
Q 020784          279 KGTLVRIFNTLDGTLLQE-ECCPS-ISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       279 Dgt~IrIWd~~tg~~i~~-~~~g~-~~~~~~~s~d~~~la~~  318 (321)
                      |++ +.+.|..++..... +..+. ....+.+.++|+++-++
T Consensus       230 ~~~-v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         230 SNN-VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             Cce-EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence            257 99999999998876 33333 35566888999887775

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.81  E-value=2.7  Score=43.19  Aligned_cols=195  Identities=14%  Similarity=0.229  Sum_probs=114.3

Q ss_pred             EEEcCC--CCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC-------CCCCCcEEEE
Q 020784           91 ISFNQD--HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-------QYPLNKVMIW  161 (321)
Q Consensus        91 v~fs~d--g~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~-------~~~d~~v~iW  161 (321)
                      |.|+.+  ...|+.+..+++++..++..+.++.++..-+.....++.......+++.+....-       ...-..++++
T Consensus       676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl  755 (1096)
T KOG1897|consen  676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVL  755 (1096)
T ss_pred             cccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEe
Confidence            446655  3578888888888888877766655553212233333443333334433321110       0011348899


Q ss_pred             eCCCCcEEEEEeeCC-----ceeEEEEeCC---eEEEEEC-----------CEEEEEEcCCcEEEEEEeccCCCCceEEE
Q 020784          162 DDHQSRCIGELSFRS-----EVRSVKLRRD---RIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAV  222 (321)
Q Consensus       162 D~~~~~~~~~~~~~~-----~v~~v~~~~~---~~~~~~~-----------~~I~iwd~~~~~~~~~l~~~~~~~~~~~~  222 (321)
                      |-++.+.+...++..     .+.++.|+.+   .+++++.           |.|.+|.+...+.++.+..+.-...+.++
T Consensus       756 D~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL  835 (1096)
T KOG1897|consen  756 DQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL  835 (1096)
T ss_pred             cCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence            988887766554432     3444557654   3555542           68888888663333333322222223333


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      .. -++.++|   +-+..|+++++..+ .+..-..|..++..+.+.-.|..+|.|.-=+. |.+-..+.
T Consensus       836 ~~-fngkllA---~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~  899 (1096)
T KOG1897|consen  836 VE-FNGKLLA---GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKG  899 (1096)
T ss_pred             hh-hCCeEEE---ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEec
Confidence            22 1347777   44568999988877 45555678889999999989999999876666 66655443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.79  E-value=0.0025  Score=61.12  Aligned_cols=195  Identities=13%  Similarity=0.104  Sum_probs=103.7

Q ss_pred             CCeEEEEEcCCCC--EEEEEcCCc-EEEEEecCC---ceeEEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCcE
Q 020784           86 PTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPF---REIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        86 ~~V~~v~fs~dg~--~lasg~~~g-v~vw~~~~~---~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..+.|++++-+.+  .++.|...| |.+-.+...   ..++...  +.......+|.. +.+.+|..-..-   =.|-.+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~--~ar~Ct~lAwneLDtn~LAagldkh---rnds~~  131 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG--YARPCTSLAWNELDTNHLAAGLDKH---RNDSSL  131 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc--ccccccccccccccHHHHHhhhhhh---cccCCc
Confidence            3688888776544  677888766 545543211   1111111  122333444432 344444432111   146779


Q ss_pred             EEEeCCCCc--EEEEEeeC----CceeEEEEeCCeEEEE---ECCEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCc
Q 020784          159 MIWDDHQSR--CIGELSFR----SEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       159 ~iWD~~~~~--~~~~~~~~----~~v~~v~~~~~~~~~~---~~~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                      +|||..++-  ......+.    ....++||..+...+.   +...++++|++. ......+.+.  .+.-..+.+- ..
T Consensus       132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk--~vqG~tVdp~-~~  208 (783)
T KOG1008|consen  132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK--YVQGITVDPF-SP  208 (783)
T ss_pred             cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh--hcccceecCC-CC
Confidence            999987762  21122221    2344678776543332   345899999973 2222223221  1111222331 23


Q ss_pred             eEEEeecCCCCcEEEEee-CC-cceEEeecccc-----ceeEEEECCC-CCEEEEEeCCCcEEEEEEcCC
Q 020784          229 LVLVCPGLQKGQVRVEHY-AS-KRTKFIMAHDS-----RIACFALTQD-GQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~-~~-~~~~~l~~H~~-----~V~~vafspd-g~~las~S~Dgt~IrIWd~~t  290 (321)
                      .+++  ...||.|.+||. .. +.....-.|..     .+..++|.|. ..+||+.+.|...||.+|+..
T Consensus       209 nY~c--s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  209 NYFC--SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             Ccee--ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            6777  467999999994 21 11111112222     3899999986 357888888876699999863

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.64  E-value=0.036  Score=35.06  Aligned_cols=29  Identities=24%  Similarity=0.442  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEe
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNC  113 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~g-v~vw~~  113 (321)
                      .++|.+++|+|..++||.|+.+| |.||.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            35799999999999999999977 778887

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.05  Score=49.70  Aligned_cols=92  Identities=11%  Similarity=0.021  Sum_probs=62.7

Q ss_pred             EEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEE-
Q 020784          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLL-  273 (321)
Q Consensus       196 I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~l-  273 (321)
                      +++.+..+++..+-+..+...+.-+++++...|.+.  .++-+.+|+|.|+.+... .++.+| ..+++++|.-|...+ 
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~--~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLG--LASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceee--eeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence            555555555554444444444555677776544333  478999999999988764 467777 889999999876554 


Q ss_pred             EEEeCCCcEEEEEEcCCC
Q 020784          274 ATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       274 as~S~Dgt~IrIWd~~tg  291 (321)
                      -.|-..|. |.|||++.-
T Consensus       252 YaGl~nG~-VlvyD~R~~  268 (463)
T KOG1645|consen  252 YAGLQNGM-VLVYDMRQP  268 (463)
T ss_pred             EEeccCce-EEEEEccCC
Confidence            44555566 999999864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.48  E-value=0.069  Score=49.35  Aligned_cols=81  Identities=14%  Similarity=0.091  Sum_probs=58.3

Q ss_pred             CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC-----------------
Q 020784          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP-----------------  300 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g-----------------  300 (321)
                      .+.+.|+|+.++....+......+....|||+|+.+|-.. ++. |.++++.+++..+--..|                 
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~n-ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNN-LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTE-EEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCc-eEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            4567789998887777666678899999999999999886 777 999999888554322223                 


Q ss_pred             -CcceeEEEeecCceEEEeec
Q 020784          301 -SISAQSGLWLSSAWLRVLRT  320 (321)
Q Consensus       301 -~~~~~~~~s~d~~~la~~~~  320 (321)
                       .....+-.|+||++||.+|.
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccccceEECCCCCEEEEEEE
Confidence             11234567899999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.32  E-value=0.61  Score=45.76  Aligned_cols=34  Identities=12%  Similarity=0.163  Sum_probs=27.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEE-EEEecC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFR-IYNCDP  115 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~-vw~~~~  115 (321)
                      ..|+.+|+|++|++||..|.+|...|.. +-.++.
T Consensus       121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            3477899999999999999999997744 444554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.28  E-value=0.29  Score=42.45  Aligned_cols=101  Identities=12%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             CCCEEEEEcC------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           96 DHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        96 dg~~lasg~~------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      .++++.++..      +..+.|++++.+.+..... ....+..++.++..+.+.+++.      .||.+-+||.++....
T Consensus       143 ~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt------~dg~~~l~d~rn~~~p  215 (319)
T KOG4714|consen  143 HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGT------DDGIVGLWDARNVAMP  215 (319)
T ss_pred             cccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEec------CCCeEEEEEcccccch
Confidence            4555555543      3456888877665433332 2345777777777777766664      4699999999877432


Q ss_pred             E-EE-eeCCceeEEEEeCC---eEEEEE-CCEEEEEEcCC
Q 020784          170 G-EL-SFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFAD  203 (321)
Q Consensus       170 ~-~~-~~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~  203 (321)
                      . .+ .+..++..+.||++   .++.+. ++.+-.||-.+
T Consensus       216 ~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            2 12 24457888999864   566665 57898898764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.12  E-value=0.68  Score=40.91  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=31.7

Q ss_pred             ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 020784          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (321)
Q Consensus       256 ~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~  296 (321)
                      +...+|-+|+.+.+..+++-.|-.|...-|||..||.++..
T Consensus       277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            34567889999977666666666666688999999998764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.09  E-value=0.11  Score=32.06  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=23.9

Q ss_pred             cceeEEEECCCC---CEEEEEeCCCcEEEEEEcCCC
Q 020784          259 SRIACFALTQDG---QLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       259 ~~V~~vafspdg---~~las~S~Dgt~IrIWd~~tg  291 (321)
                      ++|+++.|||+.   .+||-+ ++...|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~-E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWA-EHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEE-ccCCeEEEEEcccC
Confidence            479999999854   477755 44445999999964

It contains a characteristic DLL sequence motif.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.96  Score=38.19  Aligned_cols=108  Identities=10%  Similarity=0.062  Sum_probs=67.0

Q ss_pred             CCCEEEEEcC-C--cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEE
Q 020784           96 DHGCFAAGTD-H--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (321)
Q Consensus        96 dg~~lasg~~-~--gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~  172 (321)
                      ||.+|.+.+. +  .|++||+.+++.++..... ...+-.=-...-++.+.....      .++...++|.++.+++.++
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw------~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTW------KEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEe------ccceeEEEChHHhhhhccc
Confidence            4555555554 2  3889999999988877651 011110011112344444443      4688899999999998888


Q ss_pred             eeCCceeEEEEeCCeEEEEEC-CEEEEEEcCCcEEEEEE
Q 020784          173 SFRSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQI  210 (321)
Q Consensus       173 ~~~~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~~~l  210 (321)
                      .+.++-..++-..+.++...+ ..+++-|..+.....++
T Consensus       128 ~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v  166 (262)
T COG3823         128 SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTV  166 (262)
T ss_pred             ccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence            888887788777666544433 36766676655444444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.08  E-value=1.3  Score=37.57  Aligned_cols=113  Identities=19%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             CceeEEEEeC-CeEEEEE-CCEEEEEEcC--CcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC--CC---cEEE---
Q 020784          176 SEVRSVKLRR-DRIIVVL-EQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ--KG---QVRV---  243 (321)
Q Consensus       176 ~~v~~v~~~~-~~~~~~~-~~~I~iwd~~--~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~--dg---~V~i---  243 (321)
                      .++..++..+ +.+++++ +..|.+|++.  ..+.+.+|.+- +.+..+.++..  |.++++--..  ..   .+|+   
T Consensus        18 ~EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y~N   94 (215)
T PF14761_consen   18 QEPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAYFN   94 (215)
T ss_pred             cCcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccc--cceEEEEEeecCCccceEEEEEEE
Confidence            3566777766 7777755 4599999987  45666777664 23334444444  4566642211  11   4555   


Q ss_pred             EeeCC---cceE-Eeecc---------------------ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          244 EHYAS---KRTK-FIMAH---------------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       244 ~d~~~---~~~~-~l~~H---------------------~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      |+...   .++. .+-||                     ...+.|++-.|-..-|+.|+ +++ +.||.+..+..
T Consensus        95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~-l~lf~l~~~~~  167 (215)
T PF14761_consen   95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNK-LVLFTLKYQTI  167 (215)
T ss_pred             hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCE-EEEEEEEEEEE
Confidence            55431   1111 22232                     34678888887633345566 556 88998876543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.06  E-value=2.2  Score=37.38  Aligned_cols=188  Identities=14%  Similarity=0.112  Sum_probs=91.3

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Cc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+..++|+||...|++-.+ .+ +..++. .++.+....+...+....+++..++ .++++..      .++.+.+.++.
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~E------r~~~L~~~~~~   94 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEE------RDQRLYIFTID   94 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEET------TTTEEEEEEE-
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEc------CCCcEEEEEEe
Confidence            5999999998665555444 55 334443 3555555555223567777776444 4555553      35888888873


Q ss_pred             CC--c----EEEEEe--eC----CceeEEEEeC--CeEEEEEC-CEEEEEEcCC---cEEEEEEe--c------cCCCCc
Q 020784          165 QS--R----CIGELS--FR----SEVRSVKLRR--DRIIVVLE-QKIFVYNFAD---LKLLHQIE--T------IANPKG  218 (321)
Q Consensus       165 ~~--~----~~~~~~--~~----~~v~~v~~~~--~~~~~~~~-~~I~iwd~~~---~~~~~~l~--~------~~~~~~  218 (321)
                      ..  .    ....+.  ..    ..+-.++|++  ++++++.+ +-.++|.+..   ...+....  .      ......
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            21  1    112222  22    2367788876  56777755 3455665532   11111111  1      111223


Q ss_pred             eEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE--Eeec--c-----ccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 020784          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMA--H-----DSRIACFALTQDGQLLATSSTKGTLVRIF  286 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~--~l~~--H-----~~~V~~vafspdg~~las~S~Dgt~IrIW  286 (321)
                      .+.+.+.. +.+++. ...+..|.+.|.+.+.+.  .|..  |     -...-.|+|.++|.+.+ .|+.+- ..+|
T Consensus       175 ~l~~~p~t-~~lliL-S~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl-fy~f  247 (248)
T PF06977_consen  175 GLSYDPRT-GHLLIL-SDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL-FYRF  247 (248)
T ss_dssp             EEEEETTT-TEEEEE-ETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-EEEE
T ss_pred             ceEEcCCC-CeEEEE-ECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-EEEe
Confidence            45555543 345554 466667777886555443  3332  1     13578899999998766 556665 5554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.02  E-value=3.2  Score=39.06  Aligned_cols=217  Identities=13%  Similarity=0.193  Sum_probs=112.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEecCCcee-------------------------EE------------------e
Q 020784           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI-------------------------FR------------------R  122 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~-------------------------~~------------------~  122 (321)
                      .|+.++|.++..-||+|...| |.||.+...+.-                         ..                  .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            589999999988899998866 778865321110                         00                  0


Q ss_pred             eeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC---------ceeEEEEe-----CC--
Q 020784          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS---------EVRSVKLR-----RD--  186 (321)
Q Consensus       123 ~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~---------~v~~v~~~-----~~--  186 (321)
                      +. ..+.|..++.+ +-..+|++.       .+|.+.|.|++....+..-....         .|++++|.     .+  
T Consensus        83 ~~-~~g~vtal~~S-~iGFvaigy-------~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   83 DA-KQGPVTALKNS-DIGFVAIGY-------ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             ----S-SEEEEEE--BTSEEEEEE-------TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ec-cCCcEeEEecC-CCcEEEEEe-------cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            00 23455555554 333445544       67999999998888776643322         47777774     22  


Q ss_pred             ---eEEEEEC-CEEEEEEcC--C-cEEEEEEe----ccCCCC-ceEEEeeCC--------------------CceEEEee
Q 020784          187 ---RIIVVLE-QKIFVYNFA--D-LKLLHQIE----TIANPK-GLCAVSQGV--------------------GSLVLVCP  234 (321)
Q Consensus       187 ---~~~~~~~-~~I~iwd~~--~-~~~~~~l~----~~~~~~-~~~~~s~~~--------------------d~~~la~s  234 (321)
                         .++++++ +.+.+|.+.  . +.....+.    .+..++ .++.+..+.                    .+.+++  
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv--  231 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV--  231 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE--
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE--
Confidence               2455555 688888773  1 21111111    122222 233342221                    122333  


Q ss_pred             cCCCCcEEEEeeCCcc-eE-EeeccccceeEEEE-----CCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc-----
Q 020784          235 GLQKGQVRVEHYASKR-TK-FIMAHDSRIACFAL-----TQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI-----  302 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~-~~-~l~~H~~~V~~vaf-----spdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~-----  302 (321)
                       ..+..+++......+ .+ .+ ...-.+..+++     ...+..|++--.+|. |+++.+...+.+.+++....     
T Consensus       232 -vSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~-i~i~SLP~Lkei~~~~l~~~~d~~~  308 (395)
T PF08596_consen  232 -VSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS-IRIYSLPSLKEIKSVSLPPPLDSRR  308 (395)
T ss_dssp             -E-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE-EEEEETTT--EEEEEE-SS---HHH
T ss_pred             -EcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc-EEEEECCCchHhhcccCCCcccccc
Confidence             224467776554332 22 33 22223444455     235778888889999 99999999999988765321     


Q ss_pred             ceeEEEeecCceEEE
Q 020784          303 SAQSGLWLSSAWLRV  317 (321)
Q Consensus       303 ~~~~~~s~d~~~la~  317 (321)
                      ....+++.+|..+..
T Consensus       309 ~~~ssis~~Gdi~~~  323 (395)
T PF08596_consen  309 LSSSSISRNGDIFYW  323 (395)
T ss_dssp             HTT-EE-TTS-EEEE
T ss_pred             ccccEECCCCCEEEE
Confidence            123477788876654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=95.02  E-value=3.8  Score=39.99  Aligned_cols=101  Identities=15%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCcEEEEEec---CCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC------------------CC
Q 020784           95 QDHGCFAAGTDHGFRIYNCD---PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------------------QY  153 (321)
Q Consensus        95 ~dg~~lasg~~~gv~vw~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~------------------~~  153 (321)
                      -||++|....++.+.|++..   ..+......+  .+.  ..++.-+++.+++.+.....                  ..
T Consensus        20 TDG~yIY~v~~~~l~Iida~p~~~~~~~s~I~~--~~~--~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (521)
T PF09826_consen   20 TDGEYIYVVSGGRLYIIDAYPAEEMKVVSRIDL--DGS--PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYK   95 (521)
T ss_pred             ECCCEEEEEeCCEEEEEECCCchhceEEEEEec--CCC--hhheEEcCCEEEEEEeccccccccccccccccccccccCC
Confidence            38999999998889999983   4445445554  333  22333355555555532210                  00


Q ss_pred             CCCcEEEEeCCCC---cEEEEEeeCCceeEEEEeCCeEEEEECCEEEEE
Q 020784          154 PLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVY  199 (321)
Q Consensus       154 ~d~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iw  199 (321)
                      .--.+.++|+...   +.+.++...+...+.....+.+.+.+...+.+|
T Consensus        96 ~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~  144 (521)
T PF09826_consen   96 SSTKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY  144 (521)
T ss_pred             ceeEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence            1235888987644   467777777777777777788888887766666

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.99  E-value=0.051  Score=54.17  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=80.3

Q ss_pred             CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEEC---CEEEEEEcCCc
Q 020784          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---QKIFVYNFADL  204 (321)
Q Consensus       128 ~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~I~iwd~~~~  204 (321)
                      +.-.+..|+|.-.++++++=+..   ..|.|.|+- ++|+.-.....+..++++|||+..++++.+   +.+.+|...+.
T Consensus        16 avsti~SWHPsePlfAVA~fS~e---r~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPE---RGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCC---CCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence            33445677888788877763221   347788884 456655566666778899999988766643   68999998876


Q ss_pred             EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeC
Q 020784          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (321)
Q Consensus       205 ~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~  247 (321)
                      +.-....+|..++..+.+++++  ..+. ++..-|.|.+|.+.
T Consensus        92 e~htv~~th~a~i~~l~wS~~G--~~l~-t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHDG--TVLM-TLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCCC--CeEE-EcCCCceeEEEEee
Confidence            6654556677777777777765  5566 58999999998764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.79  E-value=3  Score=42.84  Aligned_cols=197  Identities=12%  Similarity=0.144  Sum_probs=118.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCC---------------cEEEEEecCCceeEEeeeecCC---ceEEEEEecCCCeEEEEeCC
Q 020784           87 TLLHISFNQDHGCFAAGTDH---------------GFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGGG  148 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~---------------gv~vw~~~~~~~~~~~~~~~~~---~v~~v~~~~~~~~~~~~sg~  148 (321)
                      ..+.+++.+...++++.+++               -++++|-++.+.....++....   .+..+.+..+.+...+++.+
T Consensus       716 ~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  716 SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence            45566666644444443321               2568888888776655552111   22233344454554444422


Q ss_pred             CCC----CCCCCcEEEEeCCCC---cEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEE
Q 020784          149 PDP----QYPLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCA  221 (321)
Q Consensus       149 ~~~----~~~d~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~  221 (321)
                      ...    .-..|.|.|+.+..+   +.+.+.+..+.|.++..-+.+++++-...|++|++.+.+.++.=..+..+..+..
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~  875 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALD  875 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEE
Confidence            210    012366788876653   2445566677888888777788888899999999998877666555666666777


Q ss_pred             EeeCCCceEEEeecCCCCcEEE--EeeCCcceEE--eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~--l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      +...+  ..+++ |+--+.|.+  ++...+....  -..|....+++.+-.+..+|. +-.+|. +.+-..
T Consensus       876 l~v~g--deI~V-gDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg-ae~~gN-lf~v~~  941 (1096)
T KOG1897|consen  876 LQVKG--DEIAV-GDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG-AENSGN-LFTVRK  941 (1096)
T ss_pred             EEecC--cEEEE-eeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe-eccccc-EEEEEe
Confidence            77765  44553 788888887  4433333333  234777888888876555543 444666 555443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.72  E-value=2.8  Score=36.91  Aligned_cols=136  Identities=10%  Similarity=0.106  Sum_probs=87.3

Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeE--EEEeCCeEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~~~~~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ...|+.+|+.+++......++....+  +....+.+...+  ++...+||..+.+.+.++......   ..++.+++ .+
T Consensus        67 ~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG---WGLt~dg~-~L  142 (264)
T PF05096_consen   67 QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG---WGLTSDGK-RL  142 (264)
T ss_dssp             EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-----EEEECSS-CE
T ss_pred             cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcc---eEEEcCCC-EE
Confidence            45799999999999888888776554  777888888776  579999999999999988654222   23334443 34


Q ss_pred             EEeecCCCCcEEEEeeCCcc-eEEee--ccc---cceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          231 LVCPGLQKGQVRVEHYASKR-TKFIM--AHD---SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~-~~~l~--~H~---~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      +..  +....+..+|-.+-. ...+.  ...   ..++.+.|- +|...|=.=.... |-.-|..+|+++..++
T Consensus       143 i~S--DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~-I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  143 IMS--DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR-IVRIDPETGKVVGWID  212 (264)
T ss_dssp             EEE---SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE-EEEEETTT-BEEEEEE
T ss_pred             EEE--CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe-EEEEeCCCCeEEEEEE
Confidence            442  223467777754322 22222  122   346667776 7888887766666 8889999999998774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.62  E-value=1.9  Score=39.94  Aligned_cols=177  Identities=11%  Similarity=0.015  Sum_probs=86.3

Q ss_pred             EEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEE
Q 020784          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQ  209 (321)
Q Consensus       134 ~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~  209 (321)
                      ++..+++.+++.+..+    ....+.+.|+.+++..+--.... ......++++  .++-.. +..++-.|+.+++....
T Consensus        42 ~ft~dG~kllF~s~~d----g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFD----GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -B-TTS-EEEEEE-TT----SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred             CcCCCCCEEEEEeccC----CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence            3455788888877532    35678888999998776544432 2223333333  333333 45888889988776555


Q ss_pred             EeccCCCCceEEEeeCCCceEEEeecCC-----------------------CCcEEEEeeCCcceEEeeccccceeEEEE
Q 020784          210 IETIANPKGLCAVSQGVGSLVLVCPGLQ-----------------------KGQVRVEHYASKRTKFIMAHDSRIACFAL  266 (321)
Q Consensus       210 l~~~~~~~~~~~~s~~~d~~~la~sGs~-----------------------dg~V~i~d~~~~~~~~l~~H~~~V~~vaf  266 (321)
                      +.......+...+..+.|+..++  |..                       ...|...|+.++..+++-.-...+.-+-|
T Consensus       118 y~~p~~~~g~gt~v~n~d~t~~~--g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~f  195 (386)
T PF14583_consen  118 YEVPDDWKGYGTWVANSDCTKLV--GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQF  195 (386)
T ss_dssp             EE--TTEEEEEEEEE-TTSSEEE--EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEE
T ss_pred             EECCcccccccceeeCCCccEEE--EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCccc
Confidence            55555555445555555666665  211                       11222345566666665555666788999


Q ss_pred             CCCCCEEEEEeCCC-----cEEEEEEcCC-CcEEEEEeCC--CcceeE-EEeecCceEEE
Q 020784          267 TQDGQLLATSSTKG-----TLVRIFNTLD-GTLLQEECCP--SISAQS-GLWLSSAWLRV  317 (321)
Q Consensus       267 spdg~~las~S~Dg-----t~IrIWd~~t-g~~i~~~~~g--~~~~~~-~~s~d~~~la~  317 (321)
                      ||....+++-+..|     . -|||-+.+ |...+.++.-  ...+.. -+++||..|..
T Consensus       196 sP~dp~li~fCHEGpw~~Vd-~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVD-QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS--SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CCCCCCEEEEeccCCcceec-eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            98876666654433     2 37897754 4444433222  122222 56788876654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.49  E-value=5  Score=38.87  Aligned_cols=48  Identities=21%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EEeecC-ceEEEe
Q 020784          270 GQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GLWLSS-AWLRVL  318 (321)
Q Consensus       270 g~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~s~d~-~~la~~  318 (321)
                      +.+|..++.||. |+-+|..+|+.+-+++.+......  .+..++ .|++++
T Consensus       406 g~~v~~g~~dG~-l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~  456 (488)
T cd00216         406 GNLVFAGAADGY-FRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVM  456 (488)
T ss_pred             CCeEEEECCCCe-EEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEE
Confidence            456677888999 999999999999888765443222  334455 455543

The alignment model contains an 8-bladed beta-propeller.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.39  E-value=4.6  Score=38.08  Aligned_cols=153  Identities=16%  Similarity=0.124  Sum_probs=73.8

Q ss_pred             cCCCCEEEEEc--C-----CcEEEEEecCCceeEEeeeecCCc---eEEEEEecCCCeEEEEeCCCC-------------
Q 020784           94 NQDHGCFAAGT--D-----HGFRIYNCDPFREIFRRDFERGGG---IGVVEMLFRCNILALVGGGPD-------------  150 (321)
Q Consensus        94 s~dg~~lasg~--~-----~gv~vw~~~~~~~~~~~~~~~~~~---v~~v~~~~~~~~~~~~sg~~~-------------  150 (321)
                      -|+|+.++++.  .     .++.+.|-++++....++.. .+.   -...-+.+.-|.+++...+.-             
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~-~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD-RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB--TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC-CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            47888777643  1     34789998888877666641 111   123344566677776654430             


Q ss_pred             -CCCCCCcEEEEeCCCCcEEEEEeeCC---ceeEEEEeCC------eEEEEECCEE-EEEEcCCc--EEEEEEeccC---
Q 020784          151 -PQYPLNKVMIWDDHQSRCIGELSFRS---EVRSVKLRRD------RIIVVLEQKI-FVYNFADL--KLLHQIETIA---  214 (321)
Q Consensus       151 -~~~~d~~v~iWD~~~~~~~~~~~~~~---~v~~v~~~~~------~~~~~~~~~I-~iwd~~~~--~~~~~l~~~~---  214 (321)
                       .. .-+++.+||+.+.+.++++.+..   .+..|.|..+      +..++...+| ++|...++  +..+.++-..   
T Consensus       217 ~~~-yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  217 AGK-YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             HH--S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             ccc-ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence             01 13789999999999999998863   4667777543      2333344444 44443332  2222222111   


Q ss_pred             --C------------CCceEEEeeCCCceEEEeecCCCCcEEEEeeCC
Q 020784          215 --N------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (321)
Q Consensus       215 --~------------~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~  248 (321)
                        .            +-.+.+|.-.-|..+|-++.-..|.|+-+|+..
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence              0            123455555556677777889999999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=94.34  E-value=5.5  Score=39.33  Aligned_cols=60  Identities=10%  Similarity=-0.021  Sum_probs=35.1

Q ss_pred             eEEEeecCCCC------cEEEEeeCC-cc---eEEeeccccceeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCc
Q 020784          229 LVLVCPGLQKG------QVRVEHYAS-KR---TKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGT  292 (321)
Q Consensus       229 ~~la~sGs~dg------~V~i~d~~~-~~---~~~l~~H~~~V~~vafspdg~~las~S~Dg--t~IrIWd~~tg~  292 (321)
                      .+.++ |+.++      .|..+|..+ ..   +..+.........+++  +|++.+.|+.||  + +-.||..+.+
T Consensus       465 ~IYv~-GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~-~e~yd~~~~~  536 (557)
T PHA02713        465 DIYVV-CDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML-QDTFNVYTYE  536 (557)
T ss_pred             EEEEE-eCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee-hhhcCccccc
Confidence            56665 54332      345577665 33   1233333334444444  688999999998  6 7777777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.22  E-value=6  Score=38.75  Aligned_cols=192  Identities=13%  Similarity=0.170  Sum_probs=101.1

Q ss_pred             CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEE---EEE-----ecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGV---VEM-----LFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        96 dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~---v~~-----~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      +|..+++..++.|.-.|..+++.+.+........+..   ...     ......+.+.+       .++.|.-.|.++|+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~l~ALDa~TGk  141 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDARLVALDAKTGK  141 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCEEEEEECCCCC
Confidence            4544444444556666777887766554310011110   000     01123344444       46889999999999


Q ss_pred             EEEEEeeCC-----ceeE-EEEeCCeEEEEE-------CCEEEEEEcCCcEEEEEEeccCCCC-----------------
Q 020784          168 CIGELSFRS-----EVRS-VKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK-----------------  217 (321)
Q Consensus       168 ~~~~~~~~~-----~v~~-v~~~~~~~~~~~-------~~~I~iwd~~~~~~~~~l~~~~~~~-----------------  217 (321)
                      .+-......     .+.+ -.+..+.+++..       ++.|..+|..+++.+-++.......                 
T Consensus       142 ~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~  221 (527)
T TIGR03075       142 VVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK  221 (527)
T ss_pred             EEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence            876654321     1111 123345566553       3689999999999888765432110                 


Q ss_pred             ------------ce-EEEeeCCCceEEEe-ecC---CCC-----------cEEEEeeCCcceE-Eee--ccc-------c
Q 020784          218 ------------GL-CAVSQGVGSLVLVC-PGL---QKG-----------QVRVEHYASKRTK-FIM--AHD-------S  259 (321)
Q Consensus       218 ------------~~-~~~s~~~d~~~la~-sGs---~dg-----------~V~i~d~~~~~~~-~l~--~H~-------~  259 (321)
                                  .+ ...+.+++..++.+ +|.   .++           .|.-.|..+++++ .++  .|+       .
T Consensus       222 tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~  301 (527)
T TIGR03075       222 TWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN  301 (527)
T ss_pred             CCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence                        00 01234443333322 222   112           2222566666655 222  232       1


Q ss_pred             ceeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCcEEE
Q 020784          260 RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQ  295 (321)
Q Consensus       260 ~V~~vafspdg~---~las~S~Dgt~IrIWd~~tg~~i~  295 (321)
                      ...-+.+..+|+   .++.+..+|. +.+.|-++|+.+.
T Consensus       302 ~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i~  339 (527)
T TIGR03075       302 EMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLLS  339 (527)
T ss_pred             CcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCceec
Confidence            122233335776   7888999998 9999999999873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.14  E-value=0.68  Score=44.17  Aligned_cols=144  Identities=10%  Similarity=0.080  Sum_probs=78.4

Q ss_pred             CCCEE-EEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC-c-EEEE
Q 020784           96 DHGCF-AAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-R-CIGE  171 (321)
Q Consensus        96 dg~~l-asg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~-~-~~~~  171 (321)
                      +..+| ..|.. +++.=.|++.++++-.+.+  ...|..+.+.++...-.+.+.+.....+++.|.-||.+-. . .+.-
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeec--cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            33443 34544 6666678899999988888  4558888887665443333322222336799999998732 2 1211


Q ss_pred             EeeCC-----ceeEEEEeCCe-EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEE
Q 020784          172 LSFRS-----EVRSVKLRRDR-IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (321)
Q Consensus       172 ~~~~~-----~v~~v~~~~~~-~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~  244 (321)
                      .+.+.     ...|..-..++ +++++ ++.||+||-...+...-|.+-..++.-+.++.++  .+|++  ..+..+.+.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadG--Kwil~--Tc~tyLlLi  497 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADG--KWILA--TCKTYLLLI  497 (644)
T ss_pred             eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccC--cEEEE--ecccEEEEE
Confidence            22221     23334434444 44444 5799999963222222234444444455555544  66653  444455553


Q ss_pred             e
Q 020784          245 H  245 (321)
Q Consensus       245 d  245 (321)
                      +
T Consensus       498 ~  498 (644)
T KOG2395|consen  498 D  498 (644)
T ss_pred             E
Confidence            3

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.02  E-value=3.3  Score=42.86  Aligned_cols=129  Identities=13%  Similarity=0.124  Sum_probs=80.2

Q ss_pred             CCCcEEEEeCC-CCc---EEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCce
Q 020784          154 PLNKVMIWDDH-QSR---CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       154 ~d~~v~iWD~~-~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      .++.+..|++. +|+   .+........|.+++-..++++++-++.+++||+.+.+++++.....-+..+..+....  .
T Consensus       910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~--~  987 (1205)
T KOG1898|consen  910 SSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG--A  987 (1205)
T ss_pred             CCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecc--e
Confidence            34667777754 344   22233344578888877778888888999999999888887766544445555665544  3


Q ss_pred             EEEeecCCCCcEEE--EeeCCcceEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          230 VLVCPGLQKGQVRV--EHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       230 ~la~sGs~dg~V~i--~d~~~~~~~~l~~--H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      -+++ |+..-.|.+  |+-..+.+.++..  -.+.|+++.+- |...+|.|..=|.   +|=++
T Consensus       988 RI~V-gD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGN---i~~vR 1046 (1205)
T KOG1898|consen  988 RIVV-GDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGN---IAVVR 1046 (1205)
T ss_pred             EEEE-eeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCc---EEEEE
Confidence            4443 555445555  7766666766643  34567777665 3445665544444   56554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.99  E-value=0.15  Score=43.32  Aligned_cols=135  Identities=13%  Similarity=0.130  Sum_probs=71.6

Q ss_pred             CCCcEEEEeCCCCcEEE-EEeeCCceeEEEEeCCeEEEE-ECCEEEEEEcCCcEEE-EEEeccCCCCceEEEeeCCCceE
Q 020784          154 PLNKVMIWDDHQSRCIG-ELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~-~~~~I~iwd~~~~~~~-~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      .++.|+-++++..+... .-.+...-..+.-....++++ +++.|.+|+....... ..+...... ..+.| +..+...
T Consensus        38 a~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~-i~~~I-p~~~~~~  115 (238)
T KOG2444|consen   38 ADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES-IDLGI-PNGRDSS  115 (238)
T ss_pred             CCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhccccc-ceecc-ccccccc
Confidence            35667777665433211 111111112333223344454 4678888887521111 111111111 12333 3333333


Q ss_pred             EEeecCCCCcEEEEeeCCcceE-Eeeccc-cceeEEEECCCCCEEEEE--eCCCcEEEEEEcCCC
Q 020784          231 LVCPGLQKGQVRVEHYASKRTK-FIMAHD-SRIACFALTQDGQLLATS--STKGTLVRIFNTLDG  291 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~~-~l~~H~-~~V~~vafspdg~~las~--S~Dgt~IrIWd~~tg  291 (321)
                      +++.|..||.|+-|+....... ..-+|. ..+.....+..++.++.+  |.|.. ++.|++..-
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~-~k~W~ve~~  179 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV-LKKWNVEKI  179 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh-hhhcchhhh
Confidence            4556999999999988765543 344566 566666666667777777  77877 888887653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.95  E-value=0.41  Score=28.81  Aligned_cols=40  Identities=18%  Similarity=0.191  Sum_probs=29.4

Q ss_pred             CCCCEEEEE-eCCCcEEEEEEcCCCcEEEEEeCCCcceeEEE
Q 020784          268 QDGQLLATS-STKGTLVRIFNTLDGTLLQEECCPSISAQSGL  308 (321)
Q Consensus       268 pdg~~las~-S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~  308 (321)
                      |+|++|..+ -.+++ |.++|..+++.+.++..|.....+.+
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECCCCCceEEe
Confidence            567655544 44666 99999999999999988766655544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.71  E-value=0.32  Score=49.93  Aligned_cols=106  Identities=23%  Similarity=0.305  Sum_probs=63.4

Q ss_pred             eeEEEEeCCeEEEEEC-CEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEe
Q 020784          178 VRSVKLRRDRIIVVLE-QKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI  254 (321)
Q Consensus       178 v~~v~~~~~~~~~~~~-~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l  254 (321)
                      +.+.+.-.-.++++++ +.|-..|+... ...+.=+....++..++|+.  ++.+++ .|-.+|.|.+||...++ ++.+
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~--dg~~l~-~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ--DGSLLL-AGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC--CCceec-cccCCCcEEEEEccCCcceeee
Confidence            4444444445666666 47777777542 11111112223444555554  568887 49999999999998754 6777


Q ss_pred             eccccceeEEEEC---CCCCEEEEEeCCCcEEEEEEcC
Q 020784          255 MAHDSRIACFALT---QDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       255 ~~H~~~V~~vafs---pdg~~las~S~Dgt~IrIWd~~  289 (321)
                      ..|..+++.+-+.   .++..+.|+...|.   +|.+.
T Consensus       169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs---f~~lv  203 (1206)
T KOG2079|consen  169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS---FWKLV  203 (1206)
T ss_pred             eecCCccceEEEEEEeCCCcEEEEccCCCc---eEEEE
Confidence            7777666555443   44556777655554   67653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.67  E-value=0.0084  Score=57.68  Aligned_cols=157  Identities=16%  Similarity=0.122  Sum_probs=88.4

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCC----c-EEEEEecCC--ceeEEeeee--cCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           83 SPPPTLLHISFNQ-DHGCFAAGTDH----G-FRIYNCDPF--REIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        83 ~~~~~V~~v~fs~-dg~~lasg~~~----g-v~vw~~~~~--~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      .+....++++|++ |..+||.|-++    . +.|||..+.  ...-...|.  ...+...++|.-+..++..+.      
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm------  173 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM------  173 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccc------
Confidence            4445889999998 67789988752    2 779998765  111111121  123445667764444443333      


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeeCCceeEEEE---eCCeEEEEECCEEEEEE-cCCc-EEEEEEeccCC----CCceEEEe
Q 020784          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKL---RRDRIIVVLEQKIFVYN-FADL-KLLHQIETIAN----PKGLCAVS  223 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~---~~~~~~~~~~~~I~iwd-~~~~-~~~~~l~~~~~----~~~~~~~s  223 (321)
                       ..+.++++|++........--...|..+.+   .++.++.-.++.|-+|| .++. ..++.+....+    ....++++
T Consensus       174 -~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  174 -TSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             -ccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence             347899999874332111111123444444   45666666789999999 3332 22333322222    24566777


Q ss_pred             eCCCceEEEeecCCCCcEEEEeeC
Q 020784          224 QGVGSLVLVCPGLQKGQVRVEHYA  247 (321)
Q Consensus       224 ~~~d~~~la~sGs~dg~V~i~d~~  247 (321)
                      +.-.|.+.++ -...++|+.+++.
T Consensus       253 Ptrtglla~l-~RdS~tIrlydi~  275 (783)
T KOG1008|consen  253 PTRTGLLAVL-SRDSITIRLYDIC  275 (783)
T ss_pred             cCCcchhhhh-ccCcceEEEeccc
Confidence            7665555443 4556788888764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.31  E-value=6.3  Score=37.29  Aligned_cols=133  Identities=13%  Similarity=0.067  Sum_probs=78.1

Q ss_pred             CCCcEEEEeCCCCc-----EEEEEeeCCceeEEEEeC-------CeEEEEECCEEEEEEcCC--cE-------EEEEEec
Q 020784          154 PLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-------DRIIVVLEQKIFVYNFAD--LK-------LLHQIET  212 (321)
Q Consensus       154 ~d~~v~iWD~~~~~-----~~~~~~~~~~v~~v~~~~-------~~~~~~~~~~I~iwd~~~--~~-------~~~~l~~  212 (321)
                      ..|.+||++...+.     .+.+.++..+|.++...+       ..+++..-.++.+|.+..  +.       .+..+-.
T Consensus        45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~ye  124 (418)
T PF14727_consen   45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYE  124 (418)
T ss_pred             cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEE
Confidence            56999999975433     566777888999988653       245666678999998821  11       1122222


Q ss_pred             cCC---CCceEEEeeCCC--ceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          213 IAN---PKGLCAVSQGVG--SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       213 ~~~---~~~~~~~s~~~d--~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      |.-   ....|.-.+.+-  ...++ .=+-||++.+++-..-....+-..---.-.++|.+.-..|++++.+.. +.-+.
T Consensus       125 h~l~~~a~nm~~G~Fgg~~~~~~Ic-VQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~-l~~Yk  202 (418)
T PF14727_consen  125 HSLQRTAYNMCCGPFGGVKGRDFIC-VQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWT-LECYK  202 (418)
T ss_pred             EecccceeEEEEEECCCCCCceEEE-EEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCcee-EEEec
Confidence            221   122222222221  23444 378899999987544332222222333456777777777888877766 66665


Q ss_pred             c
Q 020784          288 T  288 (321)
Q Consensus       288 ~  288 (321)
                      .
T Consensus       203 y  203 (418)
T PF14727_consen  203 Y  203 (418)
T ss_pred             H
Confidence            4

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.29  E-value=9.5  Score=37.93  Aligned_cols=179  Identities=9%  Similarity=0.051  Sum_probs=90.7

Q ss_pred             CeEEEEEcCCCCEEEEEc------CCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCC-----CC
Q 020784           87 TLLHISFNQDHGCFAAGT------DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-----YP  154 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~------~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~-----~~  154 (321)
                      .+...+++|||+.+|.-.      ++. -.||-....+.......  +.....-.|++++..++++..+....     ..
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            678899999999887554      232 34665543332222221  23344556777777777765331000     01


Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEECCEEEEE---EcCCcEEEEEE------eccCCCCceEEEe
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLEQKIFVY---NFADLKLLHQI------ETIANPKGLCAVS  223 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~I~iw---d~~~~~~~~~l------~~~~~~~~~~~~s  223 (321)
                      .+.+.+.+++.+....  .+...|..+.|+++.  ++...+++|.+=   ....++  ..+      ..... .....+.
T Consensus       429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~-~~~~~l~  503 (591)
T PRK13616        429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLG-DTAVSLD  503 (591)
T ss_pred             CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccC-Cccccce
Confidence            2344444555544433  445679999998864  555556776663   323343  222      11111 1123445


Q ss_pred             eCCCceEEEeecCCCCcEEEEeeC--CcceEEeec--cccceeEEEECCCCCEEEE
Q 020784          224 QGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMA--HDSRIACFALTQDGQLLAT  275 (321)
Q Consensus       224 ~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~l~~--H~~~V~~vafspdg~~las  275 (321)
                      +.+++.+++  +..++...+|.+.  ......+..  ....|.+|+=+++ .++++
T Consensus       504 W~~~~~L~V--~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~  556 (591)
T PRK13616        504 WRTGDSLVV--GRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVT  556 (591)
T ss_pred             EecCCEEEE--EecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEE
Confidence            555666654  3333434444332  222222233  3567888887763 44443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.14  E-value=0.096  Score=52.32  Aligned_cols=103  Identities=16%  Similarity=0.232  Sum_probs=74.8

Q ss_pred             EEEeCCe--EEEEE-----CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEE
Q 020784          181 VKLRRDR--IIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF  253 (321)
Q Consensus       181 v~~~~~~--~~~~~-----~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~  253 (321)
                      ..|||..  ++++.     .+.|.||- .+|+.-+.+.   .|+...+++++|...+|+ +|-.-|.+.+|..+.+..++
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---~P~hatSLCWHpe~~vLa-~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT---YPVHATSLCWHPEEFVLA-QGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc---cceehhhhccChHHHHHh-hccccceeEEEecCCceeee
Confidence            4566643  44442     36777774 2333322222   245556677788777777 59999999999988877664


Q ss_pred             -eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          254 -IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       254 -l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                       -..|..+|.-+.||++|..|+|+..-|. |.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence             4569999999999999999999999998 9999876

>PHA03098 kelch-like protein; Provisional

Probab=92.72  E-value=11  Score=36.94  Aligned_cols=130  Identities=13%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             CcEEEEeCCCCcEEEEEeeC--CceeEEEEeCCeEEEEEC--------CEEEEEEcCCcEEEEEEeccCCCC-ceEEEee
Q 020784          156 NKVMIWDDHQSRCIGELSFR--SEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQ  224 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~--------~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~  224 (321)
                      +.+-.||..+++....-...  ..-.++....+.+++.++        +.+..||..+.+= ..+.....+. ..++...
T Consensus       358 ~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~  436 (534)
T PHA03098        358 NTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIYH  436 (534)
T ss_pred             ceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEEE
Confidence            56888998877654322211  111233344556655532        4688889865432 2222111111 2223333


Q ss_pred             CCCceEEEeecCCCC--------cEEEEeeCCcceEEee---ccccceeEEEECCCCCEEEEEeCC-----CcEEEEEEc
Q 020784          225 GVGSLVLVCPGLQKG--------QVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNT  288 (321)
Q Consensus       225 ~~d~~~la~sGs~dg--------~V~i~d~~~~~~~~l~---~H~~~V~~vafspdg~~las~S~D-----gt~IrIWd~  288 (321)
                      +  +.+.++ |+.++        .+.++|..+..-..+.   ........+.+  ++++++.|+.+     +. |.++|.
T Consensus       437 ~--~~iyv~-GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~  510 (534)
T PHA03098        437 D--GKIYVI-GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINE-IEVYDD  510 (534)
T ss_pred             C--CEEEEE-CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccce-eEEEeC
Confidence            2  356665 54321        2566776654322221   11111222333  67777778765     34 778887


Q ss_pred             CCCc
Q 020784          289 LDGT  292 (321)
Q Consensus       289 ~tg~  292 (321)
                      .+.+
T Consensus       511 ~~~~  514 (534)
T PHA03098        511 KTNT  514 (534)
T ss_pred             CCCE
Confidence            7653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.68  E-value=2.5  Score=44.66  Aligned_cols=134  Identities=11%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCCcEEEEeCCCCcEEEEEee-CCceeEEEEe-C----------CeEEEEECCEEEEEEcC----CcE---EEEEEeccC
Q 020784          154 PLNKVMIWDDHQSRCIGELSF-RSEVRSVKLR-R----------DRIIVVLEQKIFVYNFA----DLK---LLHQIETIA  214 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~-~~~v~~v~~~-~----------~~~~~~~~~~I~iwd~~----~~~---~~~~l~~~~  214 (321)
                      .|+.+.+|+.+++.....+.. ...|..|..- +          ..+++++-..|.++-+.    ++.   ....++-..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            579999999998766655543 3456666642 2          13566676677777542    111   111122224


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCCcE-EE-EeeCC----c-----------------ceEEee-ccccceeEEEECCCC
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKGQV-RV-EHYAS----K-----------------RTKFIM-AHDSRIACFALTQDG  270 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~V-~i-~d~~~----~-----------------~~~~l~-~H~~~V~~vafspdg  270 (321)
                      +.+.+.++....+|.++.  |+.||.| .+ |....    +                 .+..+. .|..+|..+++....
T Consensus       177 dg~~V~~I~~t~nGRIF~--~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFF--AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CCceEEEEEeccCCcEEE--eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            455666666666777776  3445532 22 22111    0                 111233 578899999999888


Q ss_pred             CEEEEEeCCCcEEEEEEcCC
Q 020784          271 QLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       271 ~~las~S~Dgt~IrIWd~~t  290 (321)
                      ..|-+-++.|+ |++||+..
T Consensus       255 ~IlY~lsek~~-v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGT-VSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCce-EEEEEccC
Confidence            89999999999 99999986

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.53  E-value=9.3  Score=35.87  Aligned_cols=207  Identities=11%  Similarity=0.058  Sum_probs=102.6

Q ss_pred             CeEEEEEcCCCCEEEEEcC-C-----cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC----CCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP----QYPLN  156 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~-----gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~----~~~d~  156 (321)
                      .+...+++|||++||-+-+ +     .++|+|+++++.+... + .......+.|..++..+....-....    .....
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-I-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-E-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-c-cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            3446789999999986533 2     2679999998654322 1 01112237888888877666533210    00156


Q ss_pred             cEEEEeCCCCcE--EEEEeeCC--c-eeEEEEeCC--eEEEE-E---C-CEEEEEEcCCc----EEEEEEeccCCCCceE
Q 020784          157 KVMIWDDHQSRC--IGELSFRS--E-VRSVKLRRD--RIIVV-L---E-QKIFVYNFADL----KLLHQIETIANPKGLC  220 (321)
Q Consensus       157 ~v~iWD~~~~~~--~~~~~~~~--~-v~~v~~~~~--~~~~~-~---~-~~I~iwd~~~~----~~~~~l~~~~~~~~~~  220 (321)
                      .|..|++.+...  ...++...  . ...+..+.+  .+++. .   . ..+.+.++..+    ...+.+....... ..
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~-~~  281 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV-EY  281 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce-EE
Confidence            789999877642  23333322  2 445666654  34433 2   2 36788888764    2233333222211 11


Q ss_pred             EEeeCCCceEEEeecC--CCCcEEEEeeCCcc----eEEeeccccc--eeEEEECCCCCEEEEEeCCC-cEEEEEEcCCC
Q 020784          221 AVSQGVGSLVLVCPGL--QKGQVRVEHYASKR----TKFIMAHDSR--IACFALTQDGQLLATSSTKG-TLVRIFNTLDG  291 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs--~dg~V~i~d~~~~~----~~~l~~H~~~--V~~vafspdg~~las~S~Dg-t~IrIWd~~tg  291 (321)
                      .+...++ .+++.+..  .++.|.-.++....    ...+-.|...  +..+.... +.+++....++ ..|+|+++..+
T Consensus       282 ~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  282 YVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCC
Confidence            2222233 33333332  23444445555432    2366667664  44554432 33455555444 34788999844


Q ss_pred             cEEEEEe
Q 020784          292 TLLQEEC  298 (321)
Q Consensus       292 ~~i~~~~  298 (321)
                      .......
T Consensus       360 ~~~~~~~  366 (414)
T PF02897_consen  360 KESREIP  366 (414)
T ss_dssp             EEEEEEE
T ss_pred             cEEeeec
Confidence            4444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.43  E-value=14  Score=37.63  Aligned_cols=74  Identities=18%  Similarity=0.108  Sum_probs=50.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecC----------C-ceeEEeeee---------cCCceEEEEEecC---CCeEE
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDP----------F-REIFRRDFE---------RGGGIGVVEMLFR---CNILA  143 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~----------~-~~~~~~~~~---------~~~~v~~v~~~~~---~~~~~  143 (321)
                      .|..|.+|++|++||..|..+|.|-.+-.          + ..+..+.+.         +...|..+.|+|.   +..++
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            79999999999999999998877665521          1 112222211         2335677788775   36677


Q ss_pred             EEeCCCCCCCCCCcEEEEeCCCCc
Q 020784          144 LVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus       144 ~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      +..       +|+++|+||+...+
T Consensus       166 vLt-------sdn~lR~y~~~~~~  182 (717)
T PF10168_consen  166 VLT-------SDNTLRLYDISDPQ  182 (717)
T ss_pred             EEe-------cCCEEEEEecCCCC
Confidence            766       68999999987543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.06  E-value=8.7  Score=38.05  Aligned_cols=130  Identities=16%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             CCcEEEEeCCCCcEEEEEee--CCceeEEEEeCCeEEEEEC--------CEEEEEEcCCcE--EEEEEeccCCCCceEEE
Q 020784          155 LNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLK--LLHQIETIANPKGLCAV  222 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~--------~~I~iwd~~~~~--~~~~l~~~~~~~~~~~~  222 (321)
                      -++|-.||..+.+....-..  ...-.+++.....++++++        +.+..||..+.+  .+..........+++  
T Consensus       395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--  472 (571)
T KOG4441|consen  395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--  472 (571)
T ss_pred             cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE--
Confidence            35688888877664322211  1122334445556665543        478899986543  222222222222222  


Q ss_pred             eeCCCceEEEeecCCCCc-----EEEEeeCCcceEE---eeccccceeEEEECCCCCEEEEEeCCCc----EEEEEEcCC
Q 020784          223 SQGVGSLVLVCPGLQKGQ-----VRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLD  290 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~-----V~i~d~~~~~~~~---l~~H~~~V~~vafspdg~~las~S~Dgt----~IrIWd~~t  290 (321)
                      ..  ++.+.++ |+.||.     |..+|..+..-..   +....+.+-.++.  ++.+.|.|+.||.    .|..||-.+
T Consensus       473 ~~--~~~iYvv-GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  473 VL--NGKIYVV-GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             EE--CCEEEEE-CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            22  2367775 777762     5557766654332   2223333434443  5778888998883    155555544


Q ss_pred             C
Q 020784          291 G  291 (321)
Q Consensus       291 g  291 (321)
                      .
T Consensus       548 d  548 (571)
T KOG4441|consen  548 D  548 (571)
T ss_pred             C
Confidence            3

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.97  E-value=0.088  Score=52.90  Aligned_cols=59  Identities=22%  Similarity=0.464  Sum_probs=42.3

Q ss_pred             eEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEE-----------ECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA-----------LTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~va-----------fspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      .++++ |..+|.|++..........+++|...+..++           .||||..||+++.||. ++.|.+.
T Consensus       196 ~~ic~-~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy  265 (1283)
T KOG1916|consen  196 VYICY-GLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY  265 (1283)
T ss_pred             ceeee-ccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence            56665 8888999984433333345666876655543           6899999999999998 8888764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.63  E-value=4.7  Score=40.04  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             CeEEEEEC--CEEEEEEcCCcEEEEEEec-cCCCCceEEEeeCCCceEEEeecCCCCcEEEE-----eeCCc-----ceE
Q 020784          186 DRIIVVLE--QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE-----HYASK-----RTK  252 (321)
Q Consensus       186 ~~~~~~~~--~~I~iwd~~~~~~~~~l~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~-----d~~~~-----~~~  252 (321)
                      ++++++.+  ..+.|||.+.+.+...-.. ....+.-.++...+|++.+.+.|.. ..|.++     |+...     .+.
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-HHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC-cEEEEEEccchhhhcCCcccceeE
Confidence            34555542  4999999988776544332 2334455666667777655544554 466664     22221     122


Q ss_pred             --Eeeccc-cceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          253 --FIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       253 --~l~~H~-~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                        .+..|+ .+|.+.+|-++|.+++.++  + ++.|+|-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--N-qlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--N-QLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEeC--C-EEEEECC
Confidence              244555 6799999999998776443  3 3888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.32  E-value=11  Score=34.05  Aligned_cols=64  Identities=14%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             EcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           93 FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        93 fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      +..++++|+.|.+.|+.+.+.........+-+ +...|..+++...-+.+++.+|.      ...++++|+
T Consensus         9 ~~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk------~~~L~~~~L   72 (302)
T smart00036        9 ITCDGKWLLVGTEEGLYVLNISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGK------KPQLYSHPL   72 (302)
T ss_pred             cccCCcEEEEEeCCceEEEEcccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCC------cceEEEEEH
Confidence            34455799999999988777654211222222 35678899998888888888743      234999986

Unpublished observations.

>PRK13616 lipoprotein LpqB; Provisional

Probab=91.11  E-value=3.7  Score=40.74  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=50.2

Q ss_pred             eEEEeeCCCceEEEeecC-----CCCc--EEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE----
Q 020784          219 LCAVSQGVGSLVLVCPGL-----QKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN----  287 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs-----~dg~--V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd----  287 (321)
                      ..+++++  +..+|+...     .|+.  +.+.+..........+.  ..+.-.|+|||..|++.+..+..+++.+    
T Consensus       354 spaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        354 SAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             cceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            4456654  455555331     2333  43444432222222332  3788999999998888874323244433    


Q ss_pred             -------cCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          288 -------TLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       288 -------~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                             +..++...  ........+.+|+||..||+.
T Consensus       430 gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        430 GQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             ceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence                   33222211  112334556889999998874

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.82  E-value=10  Score=36.48  Aligned_cols=131  Identities=16%  Similarity=0.203  Sum_probs=80.1

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC---------eEEEE-ECCEEEEEEcCC-cEEEEEEeccCCCCceEEE
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIVV-LEQKIFVYNFAD-LKLLHQIETIANPKGLCAV  222 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------~~~~~-~~~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~  222 (321)
                      ..+.+.-.|++.|+.+.+...+..| -|.+.+.         ..+++ ++..|.-.|.+- +..+...+. .....-..|
T Consensus       488 ~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-KdY~tKn~F  565 (776)
T COG5167         488 ERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-KDYKTKNKF  565 (776)
T ss_pred             CcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-hhccccccc
Confidence            3577888888999999888877766 5555543         33444 455777667642 222222111 111111111


Q ss_pred             ee--CCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          223 SQ--GVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       223 s~--~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      +.  .-.+-++|+ |+..|.|+++|.-....+ .+.+...+|-.|..+.+|.++...+ ..+ +-+-|+.
T Consensus       566 ss~~tTesGyIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~y-llL~d~~  632 (776)
T COG5167         566 SSGMTTESGYIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNY-LLLTDVP  632 (776)
T ss_pred             cccccccCceEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cce-EEEEecc
Confidence            11  112246664 899999999886655544 5778888999999999998765554 444 6677764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.72  E-value=18  Score=35.50  Aligned_cols=144  Identities=17%  Similarity=0.085  Sum_probs=74.3

Q ss_pred             CceeEEEEeCC-------eEEEEECCEEEEEEcC-----CcEEEEEEecc---CCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          176 SEVRSVKLRRD-------RIIVVLEQKIFVYNFA-----DLKLLHQIETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       176 ~~v~~v~~~~~-------~~~~~~~~~I~iwd~~-----~~~~~~~l~~~---~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      .+|.+++|.+-       .+++-..+.|.+|.+.     +.+.+.....+   .-++.--..-++|...+|++-...|-.
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            36889999764       2334445799999884     23333332211   112221122234445666653333322


Q ss_pred             EEEEeeC--CcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEE-----EEEeCCCcceeEEEeecCc
Q 020784          241 VRVEHYA--SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL-----QEECCPSISAQSGLWLSSA  313 (321)
Q Consensus       241 V~i~d~~--~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i-----~~~~~g~~~~~~~~s~d~~  313 (321)
                      |. .+..  ...++.=-.-.+-|.|.||.+||+.|+.+=...-.-.|||-....+.     -.|..+...+.+. +.-..
T Consensus       137 V~-~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~-AT~ds  214 (671)
T PF15390_consen  137 VL-PSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIE-ATVDS  214 (671)
T ss_pred             Ee-eeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEE-Eeccc
Confidence            22 3322  23333222456779999999999987766333333679985533221     1244444433333 23345


Q ss_pred             eEEEeecC
Q 020784          314 WLRVLRTL  321 (321)
Q Consensus       314 ~la~~~~~  321 (321)
                      .+|+|+-|
T Consensus       215 qVAvaTEL  222 (671)
T PF15390_consen  215 QVAVATEL  222 (671)
T ss_pred             eEEEEecC
Confidence            56777644

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.67  E-value=13  Score=33.68  Aligned_cols=187  Identities=11%  Similarity=0.117  Sum_probs=80.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeee-cCC--ceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGG--GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~-~~~--~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ...+..|.|..+..-+++|....  |+....++........ ...  ......+.+.++...+++       ..+ +.+-
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-------~~g-~ll~   85 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-------EPG-LLLH   85 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-------ETT-EEEE
T ss_pred             CCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-------CCc-eEEE
Confidence            34799999997777788887654  4555444433222110 011  122223334444444444       123 3222


Q ss_pred             eCCCCcEEEEEe----eCCceeEEE-EeCCeEEEEECCEEEEEEc-CCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          162 DDHQSRCIGELS----FRSEVRSVK-LRRDRIIVVLEQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       162 D~~~~~~~~~~~----~~~~v~~v~-~~~~~~~~~~~~~I~iwd~-~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      -.+.|+.-..+.    .......+. +......++++. -.||-. ..++.-+.+... ....+..+....|+.++++  
T Consensus        86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~iy~T~DgG~tW~~~~~~-~~gs~~~~~r~~dG~~vav--  161 (302)
T PF14870_consen   86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GAIYRTTDGGKTWQAVVSE-TSGSINDITRSSDGRYVAV--  161 (302)
T ss_dssp             ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEE--
T ss_pred             ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-CcEEEeCCCCCCeeEcccC-CcceeEeEEECCCCcEEEE--
Confidence            233333222222    223333333 233333334332 223333 223332332221 1223455566678888886  


Q ss_pred             CCCCcEEE-EeeCCcce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          236 LQKGQVRV-EHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       236 s~dg~V~i-~d~~~~~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      +..|.+.. |+-....- ..-+.-...|.++.|+|++.+.+.+ ..|. |+.=+
T Consensus       162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~  213 (302)
T PF14870_consen  162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSD  213 (302)
T ss_dssp             ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE
T ss_pred             ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEcc
Confidence            56677776 87543321 1222345789999999999887655 5666 76555

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.33  E-value=0.69  Score=45.44  Aligned_cols=41  Identities=29%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             cceeEEEECC----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          259 SRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       259 ~~V~~vafsp----dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      +.+..++++.    +..+|++.+.|++ +||||+.+++++++....
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEETT
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEeccc
Confidence            3466677766    6788999999999 999999999998876443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=89.83  E-value=18  Score=34.19  Aligned_cols=29  Identities=14%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEec
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCD  114 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~  114 (321)
                      ++|.++.|+.+.++++.-.++.+++||+.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            68999999998887777777778899974

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.74  E-value=26  Score=35.98  Aligned_cols=143  Identities=10%  Similarity=0.129  Sum_probs=77.6

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCce----------------eE-EEEeCCeEEEEE-----------CCEEEEEEcCCcE
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEV----------------RS-VKLRRDRIIVVL-----------EQKIFVYNFADLK  205 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v----------------~~-v~~~~~~~~~~~-----------~~~I~iwd~~~~~  205 (321)
                      .|+.|.-.|.++|+.+..+..++.|                ++ -.+..+.+++..           .+.|+-||..+++
T Consensus       268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            5688888899999887665433222                01 112344555542           3679999999999


Q ss_pred             EEEEEeccCCC-C--------------ce-EEEeeCCCceEEEe-ecC----------------CCCcEEEEeeCCcceE
Q 020784          206 LLHQIETIANP-K--------------GL-CAVSQGVGSLVLVC-PGL----------------QKGQVRVEHYASKRTK  252 (321)
Q Consensus       206 ~~~~l~~~~~~-~--------------~~-~~~s~~~d~~~la~-sGs----------------~dg~V~i~d~~~~~~~  252 (321)
                      ++-.+...... .              .. ...+.+++..++.+ .|.                ..+.|.-.|..+++++
T Consensus       348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence            99888642100 0              00 11222222222221 111                1122222455555544


Q ss_pred             -Eeec--cc-------cceeEEEECC-CCC---EEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          253 -FIMA--HD-------SRIACFALTQ-DGQ---LLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       253 -~l~~--H~-------~~V~~vafsp-dg~---~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                       .++.  |+       ....-+.+.- +|+   .++.+..+|. +.++|-+||+.+...
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEeec
Confidence             2222  21       1122223332 563   7888999999 999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.62  E-value=11  Score=37.47  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=65.7

Q ss_pred             EEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEec--CCCeEEEEeCCCCCCCCCCcEEEEeCCC--
Q 020784           91 ISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDDHQ--  165 (321)
Q Consensus        91 v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~sg~~~~~~~d~~v~iWD~~~--  165 (321)
                      +.-+.-++.-++.++ ..+.|||...+..++...+...+.|..++|..  ++..+..+|       -.+.|.++--..  
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-------f~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-------FPHHVLLYTQLRYD  107 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-------cCcEEEEEEccchh
Confidence            333444443333333 34779999988887777764567888888854  555555555       467888885311  


Q ss_pred             -------CcEEEEEee----CCceeEEEEeCCeE-EEEECCEEEEEEc
Q 020784          166 -------SRCIGELSF----RSEVRSVKLRRDRI-IVVLEQKIFVYNF  201 (321)
Q Consensus       166 -------~~~~~~~~~----~~~v~~v~~~~~~~-~~~~~~~I~iwd~  201 (321)
                             -..+..+..    ..+|.+..|.+++. +++.++++.|+|-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence                   112333332    24688888988765 5567789999975

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.59  E-value=2.4  Score=41.51  Aligned_cols=50  Identities=18%  Similarity=0.158  Sum_probs=37.1

Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEeecC-ceEEEee
Q 020784          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWLSS-AWLRVLR  319 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~d~-~~la~~~  319 (321)
                      .|.++..+..||. ++.+|.+||+.+-+++.+....  -+.+.-+| +|++++.
T Consensus       471 ~g~lvf~g~~~G~-l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~~~  523 (527)
T TIGR03075       471 AGDLVFYGTLEGY-FKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLS  523 (527)
T ss_pred             CCcEEEEECCCCe-EEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEEEe
Confidence            4456666888999 9999999999999888765433  23555777 7777653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.54  E-value=8.6  Score=30.12  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             EEEEEcCCCCEEEEEcC-CcEEEEEecCC--------ceeEEeeeecCCceEEEEEec----CCCeEEEEeCCCCCCCCC
Q 020784           89 LHISFNQDHGCFAAGTD-HGFRIYNCDPF--------REIFRRDFERGGGIGVVEMLF----RCNILALVGGGPDPQYPL  155 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~-~gv~vw~~~~~--------~~~~~~~~~~~~~v~~v~~~~----~~~~~~~~sg~~~~~~~d  155 (321)
                      ..-.|......|++++. +.|.|++-...        ..+....+  +..|.+++.-.    +..-+.+++       +.
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliG-------t~   72 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIG-------TQ   72 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEe-------cc
Confidence            44567766778888877 45778864322        12233333  45666665422    122333334       35


Q ss_pred             CcEEEEeCCCCcEEEEEeeCCceeEEEEe-----CCeEEEEEC-CEEEEEEcCCcEEEEEE
Q 020784          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLR-----RDRIIVVLE-QKIFVYNFADLKLLHQI  210 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-----~~~~~~~~~-~~I~iwd~~~~~~~~~l  210 (321)
                      ..+..||+.+..-+.--+.+.-|.++.+.     +..++++.+ ..|.-||....+...++
T Consensus        73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            78999999887765544455556666553     233444443 47777777766665554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=88.73  E-value=18  Score=32.74  Aligned_cols=194  Identities=16%  Similarity=0.059  Sum_probs=99.1

Q ss_pred             EEcCCCCEEEEEc-CCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           92 SFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        92 ~fs~dg~~lasg~-~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      .|.+++..|.-.. .++ +.-|+..+++.. ....  .+.+......-....++.+.         ..+.++|.+++..+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~--p~~~~~~~~~d~~g~Lv~~~---------~g~~~~~~~~~~~~   98 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS--PGGFSSGALIDAGGRLIACE---------HGVRLLDPDTGGKI   98 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC--CCCcccceeecCCCeEEEEc---------cccEEEeccCCcee
Confidence            4556666444333 333 455655544332 2221  33344433333333444433         56788887666553


Q ss_pred             EEEeeC------CceeEEEEeCCe-EEEEECC-----------EEEEEEcC-CcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          170 GELSFR------SEVRSVKLRRDR-IIVVLEQ-----------KIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       170 ~~~~~~------~~v~~v~~~~~~-~~~~~~~-----------~I~iwd~~-~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ..+...      .....+.+.++. +.+.+-.           .-.+|-+. .+..++-+..+-..-.-+++++++  ..
T Consensus        99 t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg--~t  176 (307)
T COG3386          99 TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG--KT  176 (307)
T ss_pred             EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC--CE
Confidence            322111      112234444443 2222111           12344443 444444444322223345666654  44


Q ss_pred             EEeecCCCCcEEEEeeCC--c-----c-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          231 LVCPGLQKGQVRVEHYAS--K-----R-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~--~-----~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      +.++-+..+.|.-+++..  .     . ...+..+.+..-.++...+|.+.+++-.+|..|.+|+-. |+++.+++.-
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            443356556666654431  1     1 123334567788899999999987666665339999988 9999888755

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.00  E-value=13  Score=37.83  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=28.6

Q ss_pred             cccceeEEEECCC---CCEEEEEeCCCcEEEEEEcCCCc
Q 020784          257 HDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       257 H~~~V~~vafspd---g~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      +...|..+.|+|.   +.+|+.-..|++ +|+||+...+
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~-lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNT-LRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCE-EEEEecCCCC
Confidence            4557999999987   477888888999 9999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=87.53  E-value=19  Score=31.54  Aligned_cols=175  Identities=9%  Similarity=0.078  Sum_probs=89.3

Q ss_pred             CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC--ceeEEEEeCC-eEEEEE--CCEEEEEEcC
Q 020784          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRD-RIIVVL--EQKIFVYNFA  202 (321)
Q Consensus       128 ~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~-~~~~~~--~~~I~iwd~~  202 (321)
                      ..+..+.+.++.+.++++.+.      ++.|...|. +|+.+..+.+.+  ..-.|++..+ .+++..  .+.+.++++.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~------~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDE------PGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETT------TTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCccccEEcCCCCeEEEEECC------CCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            358888999988888777753      577877786 578888877654  5777887664 455555  3588888872


Q ss_pred             C------cEEEEEEec--c-CCCCc--eEEEeeCCCceEEEeecCCCCcEEEEeeCC----cceE--Ee------ecccc
Q 020784          203 D------LKLLHQIET--I-ANPKG--LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTK--FI------MAHDS  259 (321)
Q Consensus       203 ~------~~~~~~l~~--~-~~~~~--~~~~s~~~d~~~la~sGs~dg~V~i~d~~~----~~~~--~l------~~H~~  259 (321)
                      .      ....+++..  . ....+  -+++.+.. +.++++  ....-..|+.+..    ..+.  ..      ..+..
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~--kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVA--KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEE--EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEE--eCCCChhhEEEccccCccceeeccccccccccceec
Confidence            2      111233332  1 11122  34444433 344442  4455555544432    1121  11      22445


Q ss_pred             ceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEe--CCC--------cceeEEEeecCce
Q 020784          260 RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEEC--CPS--------ISAQSGLWLSSAW  314 (321)
Q Consensus       260 ~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~~i~~~~--~g~--------~~~~~~~s~d~~~  314 (321)
                      .+.+++|+|. |.+++-..+... |-++| .+|+.+..+.  .|.        +.-.+++..+|..
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred             cccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence            6899999987 455665555555 88999 7888776553  332        2334577777744

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=87.18  E-value=32  Score=33.82  Aligned_cols=96  Identities=15%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             EEEEcCCCCEEEEEcCCcE-EEEEec--CCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           90 HISFNQDHGCFAAGTDHGF-RIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~~gv-~vw~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      .|-|+|....|+.=..+.+ .++++.  ..+......  ..|.|-+.+|..+++.++++-|+.      =.-.|||-...
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSs------LHSyiWd~~qK  188 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSS------LHSYIWDSAQK  188 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCe------EEEEEecCchh
Confidence            4779999998887666444 466653  333333333  367888999999999888887652      35789996544


Q ss_pred             cEE-----EEEeeCCceeEEEEeCC-eEEEEEC
Q 020784          167 RCI-----GELSFRSEVRSVKLRRD-RIIVVLE  193 (321)
Q Consensus       167 ~~~-----~~~~~~~~v~~v~~~~~-~~~~~~~  193 (321)
                      ...     ..|+..+.|.++.-.-+ .++++++
T Consensus       189 tL~~CsfcPVFdv~~~Icsi~AT~dsqVAvaTE  221 (671)
T PF15390_consen  189 TLHRCSFCPVFDVGGYICSIEATVDSQVAVATE  221 (671)
T ss_pred             hhhhCCcceeecCCCceEEEEEeccceEEEEec
Confidence            321     23455667777665443 5666664

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.01  E-value=40  Score=34.76  Aligned_cols=112  Identities=16%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecCCc----eeEEeeeecCCce----------EEEEEecCCCeEEEEeC
Q 020784           84 PPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR----EIFRRDFERGGGI----------GVVEMLFRCNILALVGG  147 (321)
Q Consensus        84 ~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~~~----~~~~~~~~~~~~v----------~~v~~~~~~~~~~~~sg  147 (321)
                      ...+...|+|+|. .+.||.-..+| .-||++....    ..........|.+          ..++|..+.+.++++. 
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-  222 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-  222 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-
Confidence            4457788999984 46788888877 5599992111    1111110011222          2445555555555554 


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEE---EEeeCCceeEEEEeCC---eEEEEECCEEEEEEcCC
Q 020784          148 GPDPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD---RIIVVLEQKIFVYNFAD  203 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~---~~~~~~~v~~v~~~~~---~~~~~~~~~I~iwd~~~  203 (321)
                             ...+.++|+++.....   .......|..+.-.+.   .+++.+...|...++..
T Consensus       223 -------r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  223 -------RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             -------CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence                   4678888888765422   2222245777776655   78888999999999865

These proteins are found in fungi.

>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp

Probab=86.98  E-value=0.42  Score=35.30  Aligned_cols=11  Identities=55%  Similarity=1.038  Sum_probs=7.1

Q ss_pred             CCCCCCCCCCC
Q 020784           12 PEPTPDPNPNP   22 (321)
Q Consensus        12 ~~~~~~~~~~~   22 (321)
                      ||||||||-|-
T Consensus        63 PePPpPPPRn~   73 (124)
T PF12355_consen   63 PEPPPPPPRNH   73 (124)
T ss_pred             CCCCCcCCCCC
Confidence            67777666554

This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].

>PHA02790 Kelch-like protein; Provisional

Probab=86.69  E-value=32  Score=33.27  Aligned_cols=140  Identities=16%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             CCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCc--eeEEEEeCCeEEEEEC-----CEEEEEEcCCcEEEEEEe
Q 020784          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE--VRSVKLRRDRIIVVLE-----QKIFVYNFADLKLLHQIE  211 (321)
Q Consensus       139 ~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~--v~~v~~~~~~~~~~~~-----~~I~iwd~~~~~~~~~l~  211 (321)
                      ++.+.++||.+    ....+..||..+++....-.....  -.++....+.+++.++     ..+..||..+.+ .....
T Consensus       318 ~~~iYviGG~~----~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~  392 (480)
T PHA02790        318 NNKLYVVGGLP----NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGP  392 (480)
T ss_pred             CCEEEEECCcC----CCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE-EEeCC
Confidence            34555555542    125688899877665432222211  1233344555555532     357788876542 12211


Q ss_pred             ccCCCC-ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEE---eeccccceeEEEECCCCCEEEEEeCCCc----EE
Q 020784          212 TIANPK-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGT----LV  283 (321)
Q Consensus       212 ~~~~~~-~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~---l~~H~~~V~~vafspdg~~las~S~Dgt----~I  283 (321)
                      ....+. ..++...+  +.+.++ |   |.+.++|..+..=..   +.........+.+  +|++.+.|+.++.    .|
T Consensus       393 ~m~~~r~~~~~~~~~--~~IYv~-G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~v  464 (480)
T PHA02790        393 STYYPHYKSCALVFG--RRLFLV-G---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTI  464 (480)
T ss_pred             CCCCccccceEEEEC--CEEEEE-C---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceE
Confidence            111111 12233333  366664 5   356677765543111   2111222222333  6778888876532    15


Q ss_pred             EEEEcCCC
Q 020784          284 RIFNTLDG  291 (321)
Q Consensus       284 rIWd~~tg  291 (321)
                      .+||..++
T Consensus       465 e~Yd~~~~  472 (480)
T PHA02790        465 EVYNNRTY  472 (480)
T ss_pred             EEEECCCC
Confidence            55555543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.46  E-value=7.7  Score=33.25  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=46.4

Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCCcceE--------Eee-------ccccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--------FIM-------AHDSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~--------~l~-------~H~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                      +.+...+ +.++|+  +.+|.+++||+..+...        .+.       .....|..+.++.+|.-+++-+ +|. ..
T Consensus        16 ~~l~~~~-~~Ll~i--T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~-~y   90 (219)
T PF07569_consen   16 SFLECNG-SYLLAI--TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD-SY   90 (219)
T ss_pred             EEEEeCC-CEEEEE--eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC-EE
Confidence            3344433 235554  88899999999865432        122       3556799999999999999887 577 78


Q ss_pred             EEEcCCC
Q 020784          285 IFNTLDG  291 (321)
Q Consensus       285 IWd~~tg  291 (321)
                      .|+..-+
T Consensus        91 ~y~~~L~   97 (219)
T PF07569_consen   91 SYSPDLG   97 (219)
T ss_pred             Eeccccc
Confidence            9986543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.35  E-value=18  Score=32.25  Aligned_cols=109  Identities=10%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             CcEEEEEeeCCceeEEEEeCCe---EEEEE--CCEEEEEEcCCcEEEEEEeccCC--CCceEEEeeCCCceEEEeec---
Q 020784          166 SRCIGELSFRSEVRSVKLRRDR---IIVVL--EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPG---  235 (321)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~~~---~~~~~--~~~I~iwd~~~~~~~~~l~~~~~--~~~~~~~s~~~d~~~la~sG---  235 (321)
                      |+++........-..+.+++-.   ++.+-  .....++|..+.+...++....+  -.+--.|++  |+.+|..+-   
T Consensus        58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~--dG~~LYATEndf  135 (366)
T COG3490          58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP--DGRLLYATENDF  135 (366)
T ss_pred             CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC--CCcEEEeecCCC
Confidence            4555444444433445555432   22222  23677888887777776654322  122234454  456665432   


Q ss_pred             -CCCCcEEEEeeCCcc--eEEeeccccceeEEEECCCCCEEEEE
Q 020784          236 -LQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATS  276 (321)
Q Consensus       236 -s~dg~V~i~d~~~~~--~~~l~~H~~~V~~vafspdg~~las~  276 (321)
                       ...|.|-|||...+-  +-.+..|.-....+.+.+||++|+.+
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence             124678889887443  44788898889999999999999876

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=85.24  E-value=5.1  Score=34.29  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             cCCCCcEEEEeeCCcceE--EeeccccceeE-EEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc---ceeEEE
Q 020784          235 GLQKGQVRVEHYASKRTK--FIMAHDSRIAC-FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI---SAQSGL  308 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~--~l~~H~~~V~~-vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~---~~~~~~  308 (321)
                      |..+|.|.+|..+..-.+  ....-...|.+ |.--.++.+..+++.||. ||-|++.-++.+.-. ..|.   ..-...
T Consensus        76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~-g~h~~~~~e~~iv  153 (238)
T KOG2444|consen   76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYV-GQHNFESGEELIV  153 (238)
T ss_pred             ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeee-ccccCCCcceeEE
Confidence            999999999776521111  11111222222 333345668889999999 999999998876533 2222   122355


Q ss_pred             eecCceEEEe
Q 020784          309 WLSSAWLRVL  318 (321)
Q Consensus       309 s~d~~~la~~  318 (321)
                      +.++++|+.+
T Consensus       154 v~sd~~i~~a  163 (238)
T KOG2444|consen  154 VGSDEFLKIA  163 (238)
T ss_pred             ecCCceEEee
Confidence            6777887776

>PHA02713 hypothetical protein; Provisional

Probab=85.17  E-value=11  Score=37.16  Aligned_cols=90  Identities=18%  Similarity=0.169  Sum_probs=45.3

Q ss_pred             CcEEEEeCCCCcEEEEEee--CCceeEEEEeCCeEEEEEC--------CEEEEEEcCC---cEEEEEEeccCCCCceEEE
Q 020784          156 NKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVLE--------QKIFVYNFAD---LKLLHQIETIANPKGLCAV  222 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~--------~~I~iwd~~~---~~~~~~l~~~~~~~~~~~~  222 (321)
                      +++..||.++.+....-..  ...-.++....+.+++.++        ..+..||..+   ...+..+.......+  ..
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~--~~  509 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH--TI  509 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce--eE
Confidence            4688899888765432211  1112234445556666542        2467888875   333333322211112  22


Q ss_pred             eeCCCceEEEeecCCCC--cEEEEeeCCcc
Q 020784          223 SQGVGSLVLVCPGLQKG--QVRVEHYASKR  250 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg--~V~i~d~~~~~  250 (321)
                      ..  ++.+.++ |+.+|  .|..+|..+.+
T Consensus       510 ~~--~~~iyv~-Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        510 LH--DNTIMML-HCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EE--CCEEEEE-eeecceeehhhcCccccc
Confidence            22  3366664 87777  45556665544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.28  E-value=13  Score=35.18  Aligned_cols=39  Identities=8%  Similarity=-0.106  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEee
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRD  123 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~  123 (321)
                      +..+.+|+.+|++++.|+...-| |.|+|+.++..+..++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            34799999999999888765544 7899998887665554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=83.92  E-value=36  Score=31.52  Aligned_cols=111  Identities=11%  Similarity=0.081  Sum_probs=56.9

Q ss_pred             ceeEEEEeCCeEEEEECCEEEEE-EcCC-c----E---EEEEEeccC--CCCceEEEeeCCCceEEEeecCCC-------
Q 020784          177 EVRSVKLRRDRIIVVLEQKIFVY-NFAD-L----K---LLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQK-------  238 (321)
Q Consensus       177 ~v~~v~~~~~~~~~~~~~~I~iw-d~~~-~----~---~~~~l~~~~--~~~~~~~~s~~~d~~~la~sGs~d-------  238 (321)
                      .+..+++.++.++++....|..| |... +    +   ++..+....  .......+...+|+.+.+..|+..       
T Consensus        73 ~p~Gi~~~~~GlyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~  152 (367)
T TIGR02604        73 MVTGLAVAVGGVYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP  152 (367)
T ss_pred             CccceeEecCCEEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence            46788888777777766666655 4421 1    1   112222210  012233445556666665445321       


Q ss_pred             -----------CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          239 -----------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       239 -----------g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                                 |.|.-++..+.....+..--.....++|+++|.++++-..++...+|-.
T Consensus       153 ~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~  212 (367)
T TIGR02604       153 GTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPPLCRVTP  212 (367)
T ss_pred             CCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCCceeEEcc
Confidence                       2222233333333333322345679999999999887654444344433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.43  E-value=5.3  Score=28.94  Aligned_cols=53  Identities=15%  Similarity=0.188  Sum_probs=34.5

Q ss_pred             ecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEE-eCCCcEEEEE
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIF  286 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~-S~Dgt~IrIW  286 (321)
                      .+..+|.+.-||..+++..++..--.-.+.|++++|+..|+.+ ..-..+.|.|
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ryw   85 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYW   85 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence            3667788888999988877666555678999999999966544 3333434444

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.15  E-value=4.1  Score=25.10  Aligned_cols=30  Identities=13%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCC-C--CEEEEEcCCc-EEEEEecC
Q 020784           86 PTLLHISFNQD-H--GCFAAGTDHG-FRIYNCDP  115 (321)
Q Consensus        86 ~~V~~v~fs~d-g--~~lasg~~~g-v~vw~~~~  115 (321)
                      +.|++|.|+|+ +  ++|+-.-+.+ |.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            36899999974 4  5777766655 77999874

It contains a characteristic DLL sequence motif.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.06  E-value=35  Score=30.68  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=78.2

Q ss_pred             EEEEEeeCCceeEEEEeCCeEEEEEC-CEEEEEEcCCcE---EEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE
Q 020784          168 CIGELSFRSEVRSVKLRRDRIIVVLE-QKIFVYNFADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (321)
Q Consensus       168 ~~~~~~~~~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~---~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i  243 (321)
                      .+..+....-+..+.+..+...++-. ..++|.|+.+..   ++..+...   ...-.+...++..+++  .-.||-+. 
T Consensus        79 l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---gyaygv~vsGn~aYVa--dlddgfLi-  152 (370)
T COG5276          79 LLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---GYAYGVYVSGNYAYVA--DLDDGFLI-  152 (370)
T ss_pred             eEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCC---ceEEEEEecCCEEEEe--eccCcEEE-
Confidence            34445556667788899998888854 589999996533   22222221   2233344445444443  33555544 


Q ss_pred             EeeCCc--c-eE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC---cEEEEEeCCCcceeEEEeecCceEE
Q 020784          244 EHYASK--R-TK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG---TLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       244 ~d~~~~--~-~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg---~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      .|+.+.  + +. .+..-...-..++.|-+..+.  +.+|+. ++|-|+..-   +++..++.+-.......+.+-.|++
T Consensus       153 vdvsdpssP~lagrya~~~~d~~~v~ISGn~AYv--A~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v  229 (370)
T COG5276         153 VDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYV--AWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV  229 (370)
T ss_pred             EECCCCCCceeeeeeccCCCCceeEEEecCeEEE--EEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence            444432  2 22 333334445778888554443  457888 889999764   4566665543322333344445554


Q ss_pred             E
Q 020784          317 V  317 (321)
Q Consensus       317 ~  317 (321)
                      +
T Consensus       230 v  230 (370)
T COG5276         230 V  230 (370)
T ss_pred             E
Confidence            4

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=83.03  E-value=23  Score=37.60  Aligned_cols=130  Identities=15%  Similarity=0.203  Sum_probs=79.0

Q ss_pred             CCcEEEEeCCC-----C-----cEEEEE---eeCCceeEEEEeCCeEEEEECCEEEEEEc-CCcEEEEEEeccCCCCceE
Q 020784          155 LNKVMIWDDHQ-----S-----RCIGEL---SFRSEVRSVKLRRDRIIVVLEQKIFVYNF-ADLKLLHQIETIANPKGLC  220 (321)
Q Consensus       155 d~~v~iWD~~~-----~-----~~~~~~---~~~~~v~~v~~~~~~~~~~~~~~I~iwd~-~~~~~~~~l~~~~~~~~~~  220 (321)
                      .|.+.|+|+..     |     ..+.++   +..++|..+|=-..+++++.+.+|.+|++ +...++- +..-.-+..+.
T Consensus      1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~lig-VaFiD~~~yv~ 1142 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIG-VAFIDLPLYVH 1142 (1366)
T ss_pred             cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCccee-eEEeccceeEE
Confidence            48899999532     2     122222   23467888887777888899999999999 4444322 11112223333


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCCcceE-Eeec---cccceeEEEECCCCC--EEEEEeCCCcEEEEEEcC
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA---HDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~---H~~~V~~vafspdg~--~las~S~Dgt~IrIWd~~  289 (321)
                      .+..-  +++|.+ |+.-+.|....++.++.. .+-.   -.-.|.++.|--||.  +|+.+..|++ |+++-..
T Consensus      1143 s~~~v--knlIl~-gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN-i~vy~Y~ 1213 (1366)
T KOG1896|consen 1143 SMKVV--KNLILA-GDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN-IHVYMYA 1213 (1366)
T ss_pred             ehhhh--hhheeh-hhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc-EEEEEeC
Confidence            33221  134443 787777887555555432 2222   233588888876664  6788888999 9999654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.27  E-value=60  Score=32.88  Aligned_cols=42  Identities=17%  Similarity=0.297  Sum_probs=34.4

Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       258 ~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      .+.+..+..||++++||---++|. |.+-+....+++-+++.+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~  257 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCT  257 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCC
Confidence            467888999999999999999999 888887777776666533

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=81.93  E-value=42  Score=30.81  Aligned_cols=176  Identities=17%  Similarity=0.141  Sum_probs=91.0

Q ss_pred             cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCC--CC-CCCCCCcEEEEeCCCCcEEEEEeeCCcee----
Q 020784          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG--PD-PQYPLNKVMIWDDHQSRCIGELSFRSEVR----  179 (321)
Q Consensus       107 gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~--~~-~~~~d~~v~iWD~~~~~~~~~~~~~~~v~----  179 (321)
                      .+.|+|.++++.+-....   +-...+..+++++.+.+++.=  +. ..-...-|.+||.++-....++.......    
T Consensus        18 rv~viD~d~~k~lGmi~~---g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDT---GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE---ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             eEEEEECCCCcEEEEeec---ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            356888888776555442   334445667888877765410  00 00011349999999999888887654211    


Q ss_pred             ----EEEEe--CCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeC--C
Q 020784          180 ----SVKLR--RDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--S  248 (321)
Q Consensus       180 ----~v~~~--~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~  248 (321)
                          ...++  .+.+++..   ...|.+.|+...+.+..+...    +|..+-|.++..+...  +.||.+.-..+.  .
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----GC~~iyP~~~~~F~~l--C~DGsl~~v~Ld~~G  168 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----GCWLIYPSGNRGFSML--CGDGSLLTVTLDADG  168 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----SEEEEEEEETTEEEEE--ETTSCEEEEEETSTS
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----CEEEEEecCCCceEEE--ecCCceEEEEECCCC
Confidence                12333  23344432   247888888888888777653    3555555554445443  455655543332  2


Q ss_pred             cceE----Eeeccccce-eEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          249 KRTK----FIMAHDSRI-ACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       249 ~~~~----~l~~H~~~V-~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      +...    .|..-+.++ ..=++...+..+.=-|..|. |+--|+...+
T Consensus       169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~-v~~~dlsg~~  216 (342)
T PF06433_consen  169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN-VYSADLSGDS  216 (342)
T ss_dssp             SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE-EEEEEETTSS
T ss_pred             CEeEeeccccCCCCcccccccceECCCCeEEEEecCCE-EEEEeccCCc
Confidence            2211    121111222 22234444433444566776 6666665443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK10115 protease 2; Provisional

Probab=81.90  E-value=63  Score=32.86  Aligned_cols=202  Identities=9%  Similarity=0.003  Sum_probs=101.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Cc-----EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           87 TLLHISFNQDHGCFAAGTD-HG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~g-----v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+..+.++|||++||.+.+ +|     +++.|+.++..+... .  .+....++|..+++.++...-.+.. -....|..
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i--~~~~~~~~w~~D~~~~~y~~~~~~~-~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L--DNVEPSFVWANDSWTFYYVRKHPVT-LLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c--cCcceEEEEeeCCCEEEEEEecCCC-CCCCEEEE
Confidence            5778899999999997766 33     456677766532111 1  1222457888888877666532210 12367888


Q ss_pred             EeCCCC--cEEEEEeeCC-cee-EEEEe--CCeEEEEE----CCEEEEEEc--CCcEEEEEEeccCCCCceEEEeeCCCc
Q 020784          161 WDDHQS--RCIGELSFRS-EVR-SVKLR--RDRIIVVL----EQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       161 WD~~~~--~~~~~~~~~~-~v~-~v~~~--~~~~~~~~----~~~I~iwd~--~~~~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                      +++.++  +....+.... ... .+...  .+.+++..    ++.+.+|+.  .+++....+... ... ...+...++ 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~-  280 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-KDH-EYSLDHYQH-  280 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-CCC-EEEEEeCCC-
Confidence            999887  3322333221 121 12222  23333332    247888884  233322222221 111 122222223 


Q ss_pred             eEEEeecCCCCcEEE--EeeC-CcceEEeecc-c-cceeEEEECCCCCEEEEEeCCCcEEEEEEcCC-CcEEEEE
Q 020784          229 LVLVCPGLQKGQVRV--EHYA-SKRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEE  297 (321)
Q Consensus       229 ~~la~sGs~dg~V~i--~d~~-~~~~~~l~~H-~-~~V~~vafspdg~~las~S~Dgt~IrIWd~~t-g~~i~~~  297 (321)
                      .+.+.+.......+|  .++. .+....+-.+ . ..|..+.+. .+.++++...+|. -+|+-+.. +..+..+
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~-~~l~~~~~~~~~~~~l  353 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGL-TSLRQINRKTREVIGI  353 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCE-EEEEEEcCCCCceEEe
Confidence            333333322223334  4443 2333455555 3 368888887 3456666666765 66665442 3344444

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.03  E-value=5.8  Score=23.32  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             ccccceeEEEECCCCCEEEEEeCC---CcEEEEE
Q 020784          256 AHDSRIACFALTQDGQLLATSSTK---GTLVRIF  286 (321)
Q Consensus       256 ~H~~~V~~vafspdg~~las~S~D---gt~IrIW  286 (321)
                      .....-...+|||||++|+=++..   |. -.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            344567788999999988876654   44 5555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=80.70  E-value=15  Score=31.44  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=23.5

Q ss_pred             EEEcCCCCEEEEEcCCc-EEEEEecCCceeEEe
Q 020784           91 ISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRR  122 (321)
Q Consensus        91 v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~  122 (321)
                      +.+..++.+|++-..+| +.+||+.+.+..+..
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~   48 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP   48 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC
Confidence            33566788888888766 779999988765443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.34  E-value=10  Score=31.08  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEE
Q 020784           88 LLHISFNQDHGCFAAGTDHGFRIYN  112 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~gv~vw~  112 (321)
                      ..+|+||.||+ ||.+.++.|.|.+
T Consensus         7 ~~~l~WS~Dg~-laV~t~~~v~IL~   30 (173)
T PF12657_consen    7 PNALAWSEDGQ-LAVATGESVHILD   30 (173)
T ss_pred             CcCeeECCCCC-EEEEcCCeEEEEe
Confidence            46899999996 7777777877763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.28  E-value=26  Score=33.36  Aligned_cols=61  Identities=20%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc----EEEEEeCCCcceeEEEeec-CceEEEee
Q 020784          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT----LLQEECCPSISAQSGLWLS-SAWLRVLR  319 (321)
Q Consensus       257 H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~----~i~~~~~g~~~~~~~~s~d-~~~la~~~  319 (321)
                      -.++|.+|.||+|.+.||.--.|++ |.+++....+    ..++++.++ ..++.|.|. +.=+|..+
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~l~~~~~ck~k~-~~IlGF~W~~s~e~A~i~  130 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQLEYTQECKTKN-ANILGFCWTSSTEIAFIT  130 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCce-EEEEecCCCchhhHHHHHhccCc-ceeEEEEEecCeeEEEEe
Confidence            4568999999999999999999999 9999984322    223343332 234555544 34466544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	321
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		4e-15
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-13

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 20/210 (9%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P + I  ++    G I    ML R N +A V    +  
Sbjct: 22  FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTI---RMLHRTNYIAFVSTKKELL 78
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           +      IWDD + + I  +   + V+ + L R+ I+V     I ++ F +    ++I  
Sbjct: 79  H------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNP--WNKITE 130
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFAL 266
                G+C  + G   L++       GQ+ V    +   +       + AH + +    L
Sbjct: 131 DIKFGGVCEFANG---LLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRL 187
Query: 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            + G ++AT S  GTL+R+F T +G L++E
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVRE 217

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 31/221 (14%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P   I  ++      +  V ML R N +A V G  +  
Sbjct: 27  FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEV- 82
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
                V IWDD + + +  +   + V+ + L R+ I+V     I V+ F +     +I  
Sbjct: 83  -----VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP--WKRITD 135
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------RTKFIM 255
                G+C  S G   L++       GQ+ +    S                  +   I 
Sbjct: 136 DIRFGGVCEFSNG---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AH + I    L +   ++AT S  GT++R+F T DG L++E
Sbjct: 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	5e-67
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	7e-12

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score =  212 bits (542), Expect = 5e-67
 Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 36/251 (14%)

Query: 63  PESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR 122
           P  +   + P+      ++      +    FNQD  C    T   F IYN  P   I  +
Sbjct: 2   PLGSMITRNPIVPENHVSNP-----VTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQ 56

Query: 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVK 182
           +      +  V ML R N +A V G          V IWDD + + +  +   + V+ + 
Sbjct: 57  EM---RHLSKVRMLHRTNYVAFVTGVK------EVVHIWDDVKKQDVSRIKVDAPVKDLF 107

Query: 183 LRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242
           L R+ I+V     I V+ F +     +I       G+C  S     L++       GQ+ 
Sbjct: 108 LSREFIVVSYGDVISVFKFGN--PWKRITDDIRFGGVCEFSN---GLLVYSNEFNLGQIH 162

Query: 243 VEHYAS-----------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285
           +    S                  +   I AH + I    L +   ++AT S  GT++R+
Sbjct: 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222

Query: 286 FNTLDGTLLQE 296
           F T DG L++E
Sbjct: 223 FKTEDGVLVRE 233

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 64.4 bits (156), Expect = 7e-12
 Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 8/143 (5%)

Query: 160 IWDDHQSRCIGELSFRSEVRSVKLR-----RDRIIVVLEQKIFVYNFADLKLLHQIETIA 214
           + D      I   + R+      +         +++    +I + +    K+L +IE  +
Sbjct: 65  LKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124

Query: 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQL 272
             + +        +         +G +  + Y       + +   D   +   L +D  L
Sbjct: 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL 184

Query: 273 LATSSTKGTLVRIFNTLDGTLLQ 295
           LA  S  G  + ++N        
Sbjct: 185 LALYSPDGI-LDVYNLSSPDQAS 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.98
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.79
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.7
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.67
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.66
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.66
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.64
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.58
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.54
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.53
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.53
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.48
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.45
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.43
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.42
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.38
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.35
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.33
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.3
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.27
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.24
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.24
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.23
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.18
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.17
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.14
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.13
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.11
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.1
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.09
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.09
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.05
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.04
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.03
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.01
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.01
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.01
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.99
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.95
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.84
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.83
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.77
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.74
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.62
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.55
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.54
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.47
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.36
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.14
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.08
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.05
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.83
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.75
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.71
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.62
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.58
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.42
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.39
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.21
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.1
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.92
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.84
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.73
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.72
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.72
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.67
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.42
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.36
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.3
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.27
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.95
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.86
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.85
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.67
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.46
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.38
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.33
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.95
3ott_A	758	Two-component system sensor histidine kinase; beta	94.35
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.17
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.95
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.58
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.47
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.08
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.5
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.17
3ott_A	758	Two-component system sensor histidine kinase; beta	91.95
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.73
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.7
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.57
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.99
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	90.92
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.68
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.47
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.12
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	88.88
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.32
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.67
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	84.49
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.38
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	84.21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	84.15
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	83.32
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.09
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	82.24
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	81.82

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7.5e-33  Score=253.94  Aligned_cols=222  Identities=27%  Similarity=0.426  Sum_probs=187.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ..|...|+|++|+|||++||+|++++++||++++.+......+   +.+..+++.++++.+++++++      |++|+||
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------d~~v~iW   86 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGV------KEVVHIW   86 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSS------TTEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECC------ccEEEEE
Confidence            4577899999999999999999999999999998877666553   458888999999998887754      5899999


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCCceEEEee-cCCCC
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQKG  239 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d~~~la~s-Gs~dg  239 (321)
                      |..+++.+.++.+...|.++.++++.++++.++.|++||+.++ +.++++..   +..++++++    .+++++ |+.||
T Consensus        87 d~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----~~la~~sg~~~g  159 (355)
T 3vu4_A           87 DDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN----GLLVYSNEFNLG  159 (355)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET----TEEEEEESSCTT
T ss_pred             ECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc----cEEEEeCCCcCc
Confidence            9999999999999899999999999999999999999999887 77666665   455677776    345555 89999


Q ss_pred             cEEEEeeCCcc-----------------eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC-C
Q 020784          240 QVRVEHYASKR-----------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP-S  301 (321)
Q Consensus       240 ~V~i~d~~~~~-----------------~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g-~  301 (321)
                      .|++||+....                 +..+.+|.+.|++++|+|+|++|||||.||+.|+|||+++++++.+++.| |
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h  239 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD  239 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            99999998754                 67899999999999999999999999999965999999999999999855 5


Q ss_pred             ccee--EEEeecCceEEEee
Q 020784          302 ISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       302 ~~~~--~~~s~d~~~la~~~  319 (321)
                      ...+  +++++||++|+.+.
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEE
Confidence            5443  47788999998864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.7e-32  Score=245.93  Aligned_cols=224  Identities=13%  Similarity=0.140  Sum_probs=172.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeee---ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .+...|++++|++|+. |++|+. +.|+|||+++++......+   .|.+.|..++++++++.+++++       .|++|
T Consensus        80 ~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-------~d~~i  151 (344)
T 4gqb_B           80 QTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-------KDICI  151 (344)
T ss_dssp             EESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSCE
T ss_pred             ccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------CCCeE
Confidence            3456899999999976 555555 5589999998875443332   2678999999999999999888       68999


Q ss_pred             EEEeCCCCcEEEEEeeC-CceeEEEEeCCe---EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC-CceEEE
Q 020784          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLV  232 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~-d~~~la  232 (321)
                      +|||+++++++..+..+ ..|.++.|+++.   ++.++ |++|++||+++++.+..+..+.....+.++...+ ++.+++
T Consensus       152 ~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             EEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence            99999999999888754 589999998753   44554 5799999999998888876544433444444444 345666


Q ss_pred             eecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EE
Q 020784          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GL  308 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg-~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~  308 (321)
                       +|+.||.|+|||+.++. +.++.+|...|++|+|+|+| ++|||||.|++ |||||+++++++. + .+|...+.  +|
T Consensus       232 -sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~~-~-~~H~~~V~~v~~  307 (344)
T 4gqb_B          232 -FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELFR-S-QAHRDFVRDATW  307 (344)
T ss_dssp             -EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEEE-E-CCCSSCEEEEEE
T ss_pred             -EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEEE-E-cCCCCCEEEEEE
Confidence             59999999999998755 67899999999999999998 58999999999 9999999998875 3 47776554  55


Q ss_pred             eecCce-EEEe
Q 020784          309 WLSSAW-LRVL  318 (321)
Q Consensus       309 s~d~~~-la~~  318 (321)
                      ++++++ |+.+
T Consensus       308 sp~~~~llas~  318 (344)
T 4gqb_B          308 SPLNHSLLTTV  318 (344)
T ss_dssp             CSSSTTEEEEE
T ss_pred             eCCCCeEEEEE
Confidence            667765 5444

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.3e-31  Score=235.33  Aligned_cols=227  Identities=9%  Similarity=0.057  Sum_probs=184.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|++++++|++|+.++ |+|||+.+++.+..... |.+.|..++++++++.+++++       .|++|++
T Consensus        52 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs-------~D~~v~l  123 (304)
T 2ynn_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS-------DDLTVKL  123 (304)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE-------TTSCEEE
T ss_pred             eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEEEC-------CCCeEEE
Confidence            45777999999999999999999865 88999999987766655 788999999999999998887       7899999


Q ss_pred             EeCCCCc-EEEEEee-CCceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEec-cCCCCceEEEeeCCCceEEEe
Q 020784          161 WDDHQSR-CIGELSF-RSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       161 WD~~~~~-~~~~~~~-~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~-~~~~~~~~~~s~~~d~~~la~  233 (321)
                      ||++++. ....+.. ...|.+++|+++   .++.++ +++|++||+++.+....+.. +...+..+++++.+++.+|+ 
T Consensus       124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-  202 (304)
T 2ynn_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-  202 (304)
T ss_dssp             EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE-
T ss_pred             EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE-
Confidence            9998874 4445554 457999999873   455555 57999999987776666654 33455667777777778888 


Q ss_pred             ecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce-eEEEeec
Q 020784          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA-QSGLWLS  311 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~-~~~~s~d  311 (321)
                      +|+.||.|++||+.++. +.++.+|...|++++|+|++++|||||.||+ |||||++++++++++..+.... .++++++
T Consensus       203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 2ynn_A          203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (304)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred             EEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeeccCCCccEEEEEECCC
Confidence            59999999999998765 6789999999999999999999999999999 9999999999999996544332 3455676


Q ss_pred             Cc--eEEEe
Q 020784          312 SA--WLRVL  318 (321)
Q Consensus       312 ~~--~la~~  318 (321)
                      +.  +||.+
T Consensus       282 ~~~~~~asg  290 (304)
T 2ynn_A          282 GRKNYIASG  290 (304)
T ss_dssp             CGGGCEEEE
T ss_pred             CCceEEEEe
Confidence            64  56654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-30  Score=237.63  Aligned_cols=227  Identities=12%  Similarity=0.115  Sum_probs=186.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|.+.|++++|+|||++|++|+.|+ |+|||+.+.+....... |.+.+..++++++++.+++++       .|+.|+
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~-------~d~~v~  122 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG-------LDNICS  122 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEE-------TTCEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEe-------CCCeEE
Confidence            467889999999999999999999866 88999998887766665 678899999999999998888       679999


Q ss_pred             EEeCCCCc----EEEEEee-CCceeEEEEeCCe-EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          160 IWDDHQSR----CIGELSF-RSEVRSVKLRRDR-IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       160 iWD~~~~~----~~~~~~~-~~~v~~v~~~~~~-~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      +||+.++.    ....+.. ...|.++.|.++. ++.++ ++.|++||+.+++.+.++..|...+..+++++  ++.+++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~  200 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--DTRLFV  200 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC--CCCEEE
Confidence            99998653    3444443 3578889887654 44444 57999999999999999998877655555554  557777


Q ss_pred             eecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC---cceeEEE
Q 020784          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS---ISAQSGL  308 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~---~~~~~~~  308 (321)
                       +|+.||.|++||+..+. ..++.+|...|++++|+|+|.+||+|+.||+ |+|||+++++.+.++....   ....+.+
T Consensus       201 -sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~  278 (340)
T 1got_B          201 -SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             -EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             -EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEEEE
Confidence             59999999999998765 6689999999999999999999999999999 9999999999988875332   2234578


Q ss_pred             eecCceEEEee
Q 020784          309 WLSSAWLRVLR  319 (321)
Q Consensus       309 s~d~~~la~~~  319 (321)
                      +++|++|+++.
T Consensus       279 s~~g~~l~~g~  289 (340)
T 1got_B          279 SKSGRLLLAGY  289 (340)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEC
Confidence            89999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=236.28  Aligned_cols=225  Identities=16%  Similarity=0.131  Sum_probs=189.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|.+++|++++.+|++|+.++ |+|||+.+++.+..... +...+..++++++++.+++++       .+++|++
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~g~-------~dg~v~i  148 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQYLATGT-------HVGKVNI  148 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CTTCCCCEEECTTSSEEEEEC-------TTSEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC-CCccEEEEEECCCCCEEEEEc-------CCCcEEE
Confidence            57888999999999999999998755 88999999887665554 456777889999999988877       6799999


Q ss_pred             EeCCCCcEEEEEeeCC-ceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ||+++++....+..+. .|.+++|+++.  ++++. ++.|++||+++++.++++..|..++..+++++  ++.+|+ +|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp--d~~~l~-s~s  225 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP--DSQLLV-TAS  225 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT--TSCEEE-EEC
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC--CCCEEE-EEc
Confidence            9999998887776554 79999999863  55554 57999999999999999999888777777766  457887 599


Q ss_pred             CCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCc
Q 020784          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSA  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~  313 (321)
                      .||.|++||+.... ..++.+|...|++++|+|+|.+||+|+.|++ |+|||+.++++++++. +|...+  +.++++++
T Consensus       226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS
T ss_pred             CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCC
Confidence            99999999998755 5689999999999999999999999999999 9999999999999994 555444  46778888


Q ss_pred             eEEEee
Q 020784          314 WLRVLR  319 (321)
Q Consensus       314 ~la~~~  319 (321)
                      +|+.+.
T Consensus       304 ~l~s~~  309 (321)
T 3ow8_A          304 KIVSVG  309 (321)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-30  Score=235.01  Aligned_cols=228  Identities=11%  Similarity=0.100  Sum_probs=184.9

Q ss_pred             cCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCce-----eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      ...|.+.|++++|++++ ++|++|+.|+ |++|++.....     ...... |.+.|..++++++++.+++++       
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s-------   84 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGAYALSAS-------   84 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEE-------
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCCEEEEEe-------
Confidence            35788999999999965 8999998865 88999864322     122222 788999999999999999888       


Q ss_pred             CCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC---
Q 020784          154 PLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV---  226 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~---  226 (321)
                      .|++|+|||+++++.+..+..+ ..|.+++|+++.  ++.++ +++|++||++. +.+.++.+|...+..+.+.+..   
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC----
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCC
Confidence            7899999999999998888755 589999998763  45554 56999999974 5667888887776666766642   


Q ss_pred             -CceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce
Q 020784          227 -GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA  304 (321)
Q Consensus       227 -d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~  304 (321)
                       ++..++ +|+.||.|++||+.... ...+.+|...|++++|+|+|++||+|+.||+ |+|||+.+++++.++.......
T Consensus       164 ~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~  241 (319)
T 3frx_A          164 DDSVTII-SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVF  241 (319)
T ss_dssp             --CCEEE-EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEE
T ss_pred             CCccEEE-EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEE
Confidence             334666 59999999999998765 5578999999999999999999999999999 9999999999999997655555


Q ss_pred             eEEEeecCceEEEee
Q 020784          305 QSGLWLSSAWLRVLR  319 (321)
Q Consensus       305 ~~~~s~d~~~la~~~  319 (321)
                      .++|++++.+|+++.
T Consensus       242 ~~~~sp~~~~la~~~  256 (319)
T 3frx_A          242 SLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEEECSSSSEEEEEE
T ss_pred             EEEEcCCCCEEEEEc
Confidence            678999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-30  Score=233.06  Aligned_cols=227  Identities=10%  Similarity=0.097  Sum_probs=184.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|.+.|++++|+|||++|++|+.++ |+|||+.+......... |...+..+++.++++.+++++       .|++|+
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s-------~d~~i~   80 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGS-------DDFRIR   80 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEE-------TTSEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCCEEEEEC-------CCCEEE
Confidence            346778999999999999999998865 88999999887666554 678899999999999999888       689999


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +||+++++.+..+..+ ..|.+++|+++.  ++.++ +++|++||++++ .+.+.+..|...+..+++++. ++.+++ +
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~-s  158 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-DPSTFA-S  158 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT-CTTEEE-E
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC-CCCEEE-E
Confidence            9999999998888755 479999999864  55554 579999999876 666778888777666666653 345676 5


Q ss_pred             cCCCCcEEEEeeCCcc-eEE-eeccccceeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEE
Q 020784          235 GLQKGQVRVEHYASKR-TKF-IMAHDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGL  308 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~-~~~-l~~H~~~V~~vafsp--dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~  308 (321)
                      |+.||.|++||+.... ... ..+|...|..++|+|  ++.+||+||.|++ |+|||+++++++.++. +|...+  +.+
T Consensus       159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~-~h~~~v~~~~~  236 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLE-GHMSNVSFAVF  236 (304)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEE-CCSSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeC-CCCCCEEEEEE
Confidence            9999999999987543 333 446778999999986  7889999999999 9999999999999995 555443  477


Q ss_pred             eecCceEEEee
Q 020784          309 WLSSAWLRVLR  319 (321)
Q Consensus       309 s~d~~~la~~~  319 (321)
                      ++++.+|+.+.
T Consensus       237 ~p~~~~l~s~s  247 (304)
T 2ynn_A          237 HPTLPIIISGS  247 (304)
T ss_dssp             CSSSSEEEEEE
T ss_pred             CCCCCEEEEEc
Confidence            78888888764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-31  Score=246.22  Aligned_cols=226  Identities=12%  Similarity=0.154  Sum_probs=190.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|..+|++++|+|++.+|++|+.|+ |+|||+.+++....... |.+.|..++++++++.+++++       .|++|+
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs-------~D~~i~  175 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS-------ADMTIK  175 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSCCC
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEe-------CCCeEE
Confidence            357889999999999999999999865 88999999887666554 688999999999999888888       689999


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      |||+.+++++..+..+ ..|.+++|+++  .+++++ +++|++||+++++.++++..|...+..+  .+++++.+++ +|
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~--~~~~~g~~l~-s~  252 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIA-SC  252 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECTTSSEEE-EE
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE--EECCCCCEEE-EE
Confidence            9999999988887654 47999999875  455554 5799999999999999999887665444  4555668888 59


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCC--------------------CCEEEEEeCCCcEEEEEEcCCCcEE
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspd--------------------g~~las~S~Dgt~IrIWd~~tg~~i  294 (321)
                      +.||.|++||+.... ...+.+|...|.+++|+|+                    |.+|++|+.|++ |+|||+++++++
T Consensus       253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~~  331 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCL  331 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCceE
Confidence            999999999998765 5689999999999999996                    679999999999 999999999999


Q ss_pred             EEEeCCCcce--eEEEeecCceEEEee
Q 020784          295 QEECCPSISA--QSGLWLSSAWLRVLR  319 (321)
Q Consensus       295 ~~~~~g~~~~--~~~~s~d~~~la~~~  319 (321)
                      .++. +|...  .+.+++++++|+.+.
T Consensus       332 ~~~~-~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          332 MTLV-GHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             EEEE-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEE-CCCCcEEEEEEcCCCCEEEEEe
Confidence            9985 55544  347778899998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-31  Score=247.03  Aligned_cols=227  Identities=11%  Similarity=0.171  Sum_probs=190.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+++|++|++|+.|+ |+|||+.+.+.+..... |.+.|..++++++++.+++++       .|++|++
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~l~s~s-------~D~~i~~  218 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSAS-------RDKTIKM  218 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC-CSSCEEEEEECSSSSEEEEEE-------TTSEEEE
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEEeCCCCEEEEEe-------CCCeEEE
Confidence            56888999999999999999999865 88999988876555443 678899999999999988887       6899999


Q ss_pred             EeCCCCcEEEEEeeCC-ceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCC---------
Q 020784          161 WDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---------  227 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d---------  227 (321)
                      ||++++.++..+..+. .|.++.++++.  +++++ ++.|++||+.+++....+..|...+..++++++..         
T Consensus       219 wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  298 (410)
T 1vyh_C          219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG  298 (410)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred             EECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence            9999999988887654 68999998764  55554 57999999999999999988887777777776421         


Q ss_pred             ---------ceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          228 ---------SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       228 ---------~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                               +.+++ +|+.||.|++||+.++. +.++.+|...|++++|+|+|++|+||+.||+ |+|||+.+++++.++
T Consensus       299 ~~~~~~~~~g~~l~-sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          299 SETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTL  376 (410)
T ss_dssp             CC-------CCEEE-EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEE
T ss_pred             ccccccCCCCCEEE-EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEE
Confidence                     45677 59999999999998765 6789999999999999999999999999999 999999999999998


Q ss_pred             eCCCccee--EEEeecCceEEEee
Q 020784          298 CCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       298 ~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      . +|...+  +.+++++.+|+.+.
T Consensus       377 ~-~h~~~v~~l~~~~~~~~l~sgs  399 (410)
T 1vyh_C          377 N-AHEHFVTSLDFHKTAPYVVTGS  399 (410)
T ss_dssp             E-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             c-CCCCcEEEEEEcCCCCEEEEEe
Confidence            5 555444  46778888998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-30  Score=235.04  Aligned_cols=227  Identities=14%  Similarity=0.171  Sum_probs=183.7

Q ss_pred             cCCCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~d----g~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      ...|.+.|++|+|+++    +++|++|+.|+ |+||++...+......+. |...|..+++.++...+++++       .
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s-------~  100 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS-------L  100 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE-------T
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe-------C
Confidence            3578999999999975    67899998755 889999877654443332 677899999999888888877       6


Q ss_pred             CCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      |++|++||+.+++.+..+..+ ..+.+++|+++.  ++++. ++.|++||+.+++....+..+...+..+++  .+++.+
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~--spdg~~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY--SPDGKY  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE--CTTSSE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE--CCCCCE
Confidence            899999999999988887654 478889999864  44443 479999999999988888877655444555  556688


Q ss_pred             EEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EE
Q 020784          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SG  307 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~  307 (321)
                      || +|+.||.|++||+.++. +.++.+|...|++++|+|+|++||+|+.||+ |+|||+++++++.++. +|...+  +.
T Consensus       179 la-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~h~~~v~~~~  255 (321)
T 3ow8_A          179 LA-SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLS-GHASWVLNVA  255 (321)
T ss_dssp             EE-EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEEC-CCSSCEEEEE
T ss_pred             EE-EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEc-CCCCceEEEE
Confidence            88 59999999999998765 5689999999999999999999999999999 9999999999999884 565443  47


Q ss_pred             EeecCceEEEee
Q 020784          308 LWLSSAWLRVLR  319 (321)
Q Consensus       308 ~s~d~~~la~~~  319 (321)
                      +++++++|+.+.
T Consensus       256 ~sp~~~~l~s~s  267 (321)
T 3ow8_A          256 FCPDDTHFVSSS  267 (321)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            778899998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.3e-30  Score=233.94  Aligned_cols=229  Identities=11%  Similarity=0.081  Sum_probs=188.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|...|+|++|+|||++||+|+.|+ |+|||..+.+....... |...+..++++++++.+++++       .|++++
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~-------~d~~i~  131 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGG-------LDNKCS  131 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEES-------TTSEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEee-------CCCCEE
Confidence            357889999999999999999999866 88999988877666555 567889999999999988877       679999


Q ss_pred             EEeCCCC------cEEEEEe-eCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCce
Q 020784          160 IWDDHQS------RCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       160 iWD~~~~------~~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      +|++...      .....+. +...|.++.|+++  .++.++ +++|++||+.+++.++++.+|...+..+++++++++.
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            9998643      1223333 4457899999875  455554 5799999999999999999998887788888877777


Q ss_pred             EEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc---cee
Q 020784          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI---SAQ  305 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~---~~~  305 (321)
                      +++ +|+.||.|++||+.++. +..+.+|...|++++|+|+|.+||+|+.|++ |||||+++++.+..+.....   ...
T Consensus       212 ~l~-sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          212 TFV-SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGASS  289 (354)
T ss_dssp             EEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EEE-EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcccceeE
Confidence            887 59999999999998765 5689999999999999999999999999999 99999999998887753322   234


Q ss_pred             EEEeecCceEEEee
Q 020784          306 SGLWLSSAWLRVLR  319 (321)
Q Consensus       306 ~~~s~d~~~la~~~  319 (321)
                      +.+++++++|+++.
T Consensus       290 ~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          290 VDFSLSGRLLFAGY  303 (354)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             EEEeCCCCEEEEEE
Confidence            57888999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.98  E-value=7.3e-31  Score=240.99  Aligned_cols=227  Identities=13%  Similarity=0.141  Sum_probs=173.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeee---ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..|...|++++|+||+++|+++.++.|+|||+.+.+......+   .|.+.|..++++++++.+++++       .|++|
T Consensus        91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-------~dg~v  163 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-------KDFSV  163 (357)
T ss_dssp             EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------TTSCE
T ss_pred             CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------CCCeE
Confidence            3567789999999999988877778899999987654322221   2678899999999999998887       67999


Q ss_pred             EEEeCCCCcEEEEEeeC-CceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCC-ceEEE
Q 020784          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLV  232 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d-~~~la  232 (321)
                      +|||+++++.+..+..+ ..|.+++|+++   .++.+. ++.|++||+++++.+..+........+.++.+.++ +.+++
T Consensus       164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            99999999998888754 57999999864   344454 57999999998887776655444444445554444 35666


Q ss_pred             eecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EE
Q 020784          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GL  308 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg-~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~  308 (321)
                       +|+.||.|++||+.+.. +.++.+|...|++|+|+|++ ++|||||.|++ |||||++++++++.+  +|...+.  +|
T Consensus       244 -~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~--~H~~~V~~vaf  319 (357)
T 4g56_B          244 -CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL--SHRDFVTGVAW  319 (357)
T ss_dssp             -EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC--CCSSCEEEEEE
T ss_pred             -EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC--CCCCCEEEEEE
Confidence             59999999999998755 67899999999999999987 68999999999 999999999998765  5665544  55


Q ss_pred             ee-cCceEEEee
Q 020784          309 WL-SSAWLRVLR  319 (321)
Q Consensus       309 s~-d~~~la~~~  319 (321)
                      ++ |+++|+.+.
T Consensus       320 sP~d~~~l~s~s  331 (357)
T 4g56_B          320 SPLDHSKFTTVG  331 (357)
T ss_dssp             CSSSTTEEEEEE
T ss_pred             eCCCCCEEEEEc
Confidence            65 688998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=236.35  Aligned_cols=201  Identities=8%  Similarity=-0.010  Sum_probs=163.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCC-eEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|.+.|++|+|+|||++|++|+.++ |+|||+.+++.+..... |.+.|..+++++++. .+++++       .|++|+
T Consensus       124 ~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s-------~D~~v~  195 (344)
T 4gqb_B          124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDSVFLSCS-------EDNRIL  195 (344)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTTEEEEEE-------TTSCEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCCceeeec-------cccccc
Confidence            46888999999999999999999865 89999999887766654 788999999988875 456666       679999


Q ss_pred             EEeCCCCcEEEEEeeC---CceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          160 IWDDHQSRCIGELSFR---SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~---~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      |||+++++....+...   ..+.+++|+++   .++++. ++.|++||++++++++++..|...+..++|++++. .+||
T Consensus       196 iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~-~~la  274 (344)
T 4gqb_B          196 LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV-PFLA  274 (344)
T ss_dssp             EEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS-CCEE
T ss_pred             cccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC-eEEE
Confidence            9999999988776533   35889999864   344444 57999999999999999999988777777776532 4566


Q ss_pred             eecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCcE
Q 020784          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg~~  293 (321)
                       +|+.||+|+|||..++.+..+.+|.+.|++|+|+|+|+ +|||||.||+ |++|++.+..+
T Consensus       275 -sgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~-v~~w~v~~~~~  334 (344)
T 4gqb_B          275 -SLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ-VVHHVVPTEPL  334 (344)
T ss_dssp             -EEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEECCC---
T ss_pred             -EEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe-EEEEECCCCCC
Confidence             69999999999999988888999999999999999986 6789999999 99999988654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=4.4e-29  Score=222.97  Aligned_cols=229  Identities=17%  Similarity=0.130  Sum_probs=171.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCC--ceeEEeeeecCCceEEEEEecC--CCeEEEEeCCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF--REIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~--~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~d  155 (321)
                      ...|...|++++|++||++||+|+.|+ |+|||+...  +....... |.+.|..+++.++  ++.+++++       .|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s-------~D   76 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS-------YD   76 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEE-------TT
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEc-------CC
Confidence            356888999999999999999999755 899999743  33334433 7888999998753  67888877       68


Q ss_pred             CcEEEEeCCCCc--EEEEEe-eCCceeEEEEeCC----eEEEEE-CCEEEEEEcCCcE--EEEEEeccCCCCceEEEeeC
Q 020784          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       156 ~~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~~~~~~-~~~I~iwd~~~~~--~~~~l~~~~~~~~~~~~s~~  225 (321)
                      ++|+|||+++++  .+..+. +...|.+++|+++    .+++++ ++.|++||+++..  ....+..|...+..++++++
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            999999998874  344444 3457999999874    455555 5799999997653  23456677666666666664


Q ss_pred             C-----------CceEEEeecCCCCcEEEEeeCCcc-----eEEeeccccceeEEEECCCC---CEEEEEeCCCcEEEEE
Q 020784          226 V-----------GSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIF  286 (321)
Q Consensus       226 ~-----------d~~~la~sGs~dg~V~i~d~~~~~-----~~~l~~H~~~V~~vafspdg---~~las~S~Dgt~IrIW  286 (321)
                      .           ++.+|| +|+.||+|++||+....     ..++.+|...|++|+|+|++   .+|||||.|++ |+||
T Consensus       157 ~~~~~~~~~~~~~~~~l~-sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iW  234 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIW  234 (297)
T ss_dssp             C------------CCEEE-EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEE
T ss_pred             cccccccCCCCCCcceEE-EEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEE
Confidence            2           235777 59999999999987543     35788999999999999995   89999999999 9999


Q ss_pred             EcCCCc--EEEEEe--CCCcc--eeEEEeecCceEEEee
Q 020784          287 NTLDGT--LLQEEC--CPSIS--AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       287 d~~tg~--~i~~~~--~g~~~--~~~~~s~d~~~la~~~  319 (321)
                      |+++++  ......  .++..  ..+.++++|++||.+.
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence            998753  222221  23333  3457788999998864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=1.8e-29  Score=247.54  Aligned_cols=210  Identities=16%  Similarity=0.205  Sum_probs=167.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ....|...|++++|+|||++||+|+.++ |+|||+.+.+......+. |.+.|..++|++++..+++++.+.+   ..++
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~---~~~~  130 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGH  130 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEE
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC---ceeE
Confidence            3457888999999999999999999865 889999765433222222 6789999999999999988875422   2357


Q ss_pred             EEEEeCCCCcEEEEEeeC-CceeEEEEeCCe---EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          158 VMIWDDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      |++||.  ++....+..+ ..|.+++|+++.   ++.++ +++|++||..++++++++.+|...+..++|++  |+.+||
T Consensus       131 v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~la  206 (611)
T 1nr0_A          131 VFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFA  206 (611)
T ss_dssp             EEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEE
T ss_pred             EEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEE
Confidence            888884  4444455444 479999999863   55555 46999999999999999998887766666665  557888


Q ss_pred             eecCCCCcEEEEeeCCcc-eEEee-------ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          233 CPGLQKGQVRVEHYASKR-TKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~-~~~l~-------~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                       +|+.||+|++||...+. +..+.       +|.+.|++++|+|+|++|||||.|++ |||||+.+++++.++.
T Consensus       207 -s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          207 -STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIP  278 (611)
T ss_dssp             -EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEE
T ss_pred             -EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeec
Confidence             59999999999987654 44563       79999999999999999999999999 9999999999887664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=8.1e-29  Score=229.93  Aligned_cols=220  Identities=15%  Similarity=0.157  Sum_probs=178.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      .|++++|+|||++||+|+.++ |+|||+.+.+....... |.+.|..++++++++.+++++       .|++|++||+++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s-------~d~~v~iwd~~~  196 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGS-------GDRTVRIWDLRT  196 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEec-------CCCcEEEEECCC
Confidence            599999999999999998865 88999998877655554 678899999999999998887       679999999999


Q ss_pred             CcEEEEEeeCCceeEEEEeC-C--eEEEEE-CCEEEEEEcCCcEEEEEEe-------ccCCCCceEEEeeCCCceEEEee
Q 020784          166 SRCIGELSFRSEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIE-------TIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~-~--~~~~~~-~~~I~iwd~~~~~~~~~l~-------~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +++...+.....+.++.+++ +  .+++++ ++.|++||+++++.+..+.       +|...  +.++.+.+++.+|+ +
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~--v~~v~~~~~g~~l~-s  273 (393)
T 1erj_A          197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS--VYSVVFTRDGQSVV-S  273 (393)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC--EEEEEECTTSSEEE-E
T ss_pred             CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC--EEEEEECCCCCEEE-E
Confidence            99988888888999999987 3  455554 5799999999998888773       34444  44455555668887 5


Q ss_pred             cCCCCcEEEEeeCCc-------------ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          235 GLQKGQVRVEHYASK-------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~-------------~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      |+.||.|++||+...             ....+.+|...|.+++|+|++.+|++||.||+ |+|||+++++++.++. +|
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~-~h  351 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ-GH  351 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE-CC
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEEC-CC
Confidence            999999999998642             23478899999999999999999999999999 9999999999999885 66


Q ss_pred             cceeEEEe--e------cCceEEEee
Q 020784          302 ISAQSGLW--L------SSAWLRVLR  319 (321)
Q Consensus       302 ~~~~~~~s--~------d~~~la~~~  319 (321)
                      ...+.++.  +      ++.+|+.+.
T Consensus       352 ~~~v~~v~~~~~~~~~p~~~~l~sgs  377 (393)
T 1erj_A          352 RNSVISVAVANGSSLGPEYNVFATGS  377 (393)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             CCCEEEEEecCCcCcCCCCCEEEEEC
Confidence            66555443  2      567787754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1.2e-28  Score=224.52  Aligned_cols=227  Identities=14%  Similarity=0.060  Sum_probs=176.3

Q ss_pred             cCCCCCCeEEEEE-----cC-CCCEEEEEcCCc-EEEEEecCCc-------eeEEeeeecCCceEEEEEecCCCeEEEEe
Q 020784           81 SSSPPPTLLHISF-----NQ-DHGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRCNILALVG  146 (321)
Q Consensus        81 ~~~~~~~V~~v~f-----s~-dg~~lasg~~~g-v~vw~~~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~~~~s  146 (321)
                      ...|...|++++|     ++ ||++|++|+.|+ |+|||+...+       ....... |.+.|..+++++++..+++++
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEEEEEE
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEEEEEc
Confidence            3578889999999     76 999999999855 8999987532       1112222 678899999999999888877


Q ss_pred             CCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEe---ccCCCCce
Q 020784          147 GGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIE---TIANPKGL  219 (321)
Q Consensus       147 g~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~---~~~~~~~~  219 (321)
                             .|++|++||+++++.+..+..+ ..|.+++|+++  .+++++ +++|++||+..... ..+.   .|...+..
T Consensus        96 -------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           96 -------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDWVSC  167 (343)
T ss_dssp             -------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSCEEE
T ss_pred             -------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCceeee
Confidence                   6899999999999988888754 58999999976  455554 57999999985433 3332   34444455


Q ss_pred             EEEeeCCC--------ceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc-CC
Q 020784          220 CAVSQGVG--------SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LD  290 (321)
Q Consensus       220 ~~~s~~~d--------~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~-~t  290 (321)
                      ++++++..        +.+++ +|+.||.|++||........+.+|...|++++|+|+|++||+|+.||+ |+|||+ ..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~  245 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFA-SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL  245 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEE-EEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC
T ss_pred             eeeccccccccccCCCCCEEE-EEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC
Confidence            55555431        25676 599999999999766667789999999999999999999999999999 999999 45


Q ss_pred             CcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          291 GTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       291 g~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      +.....+..++....++|++++++|+++
T Consensus       246 ~~~~~~~~~~~~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          246 TYPQREFDAGSTINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             SSCSEEEECSSCEEEEEECSSSCEEEEE
T ss_pred             cccceeecCCCcEEEEEECCCCCEEEEE
Confidence            5566666566666667889999998875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.9e-29  Score=227.82  Aligned_cols=181  Identities=12%  Similarity=0.054  Sum_probs=144.5

Q ss_pred             eEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEECCEEEEEEcCCcEEE
Q 020784          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLEQKIFVYNFADLKLL  207 (321)
Q Consensus       130 v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~I~iwd~~~~~~~  207 (321)
                      +.+++++++++.+++++++     .|++|+|||+++++.+..+.++..|.+++|+++.  ++.++++.+++|+..+++.+
T Consensus       136 ~~~v~fSpDg~~la~as~~-----~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~  210 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSK-----VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI  210 (365)
T ss_dssp             EEEEEECTTSSCEEEEESC-----SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred             EEEEEEcCCCCEEEEEECC-----CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence            5678889999999988876     5799999999999999999988899999999864  55566788999998877765


Q ss_pred             EEEe--ccCCCCceEEEeeCCCceEEEeecCCCC----cEEEEeeCCcc-----eEEeeccccceeEEEECCCCCEEEEE
Q 020784          208 HQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATS  276 (321)
Q Consensus       208 ~~l~--~~~~~~~~~~~s~~~d~~~la~sGs~dg----~V~i~d~~~~~-----~~~l~~H~~~V~~vafspdg~~las~  276 (321)
                      ....  .|...+..++|++  ++..+++ ++.|+    .+++|+.....     ...+.+|...|++|+|||||++||+|
T Consensus       211 ~~~~~~~~~~~v~~v~fsp--dg~~l~~-~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg  287 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIA--DDTVLIA-ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA  287 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEE--TTEEEEE-EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred             eeeecCCCCCCEEEEEEcC--CCCEEEE-EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence            5443  2434445566666  4577774 55555    45668876533     23678899999999999999999999


Q ss_pred             eCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          277 STKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       277 S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      +.|++ |+|||++++++++++..+|...+  ++|++||++||.++
T Consensus       288 s~D~~-V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          288 SNDNS-IALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             ETTSC-EEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred             cCCCE-EEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence            99999 99999999999999877887654  48889999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=223.42  Aligned_cols=230  Identities=11%  Similarity=0.124  Sum_probs=189.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ....|...|++++|+|||++|++|+.++ |+|||+.+.+....... |.+.+..++++++++.+++++       .|++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~-------~dg~i   98 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGS-------ADYSI   98 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTTEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEe-------CCCeE
Confidence            3467889999999999999999998765 88999998887666554 688899999999999998887       67999


Q ss_pred             EEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE-C-----CEEEEEEcCCcE-----------EEEEEeccCCCCce
Q 020784          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-E-----QKIFVYNFADLK-----------LLHQIETIANPKGL  219 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-~-----~~I~iwd~~~~~-----------~~~~l~~~~~~~~~  219 (321)
                      ++||+.+++.+..+.+...|.++.|+++.  ++++. +     +.|++||+...+           .+..+..+.....+
T Consensus        99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B           99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            99999999999999988899999998753  44444 3     799999986542           23344444442245


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      .++...+++.++++ |+.||.|++||+..  ..+..+..|...|.+++|+|++.+|++++.||. |+|||+++++++..+
T Consensus       179 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          179 TVAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EEEEECGGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             eEEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeee
Confidence            55555666678874 89999999999986  346688999999999999999999999999999 999999999999999


Q ss_pred             eCCCcceeEEEeecCceEEEee
Q 020784          298 CCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       298 ~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ........+.+++++++|+++.
T Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          257 ETDCPLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEE
T ss_pred             cCCCCceeEEecCCCceEEEee
Confidence            8666666778899999998764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=4.9e-30  Score=237.10  Aligned_cols=228  Identities=13%  Similarity=0.137  Sum_probs=178.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|.+.|++++|+|||++|++|+.|+ |+|||..+.+....... |...+..++++++++.+++++       .|+.|+
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las~~-------~d~~v~  133 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVACGG-------LDSACS  133 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEECC-------SSSCCE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEEee-------CCCcEE
Confidence            467899999999999999999999866 88999999887766665 678899999999999887766       679999


Q ss_pred             EEeCCCCc-------EEEEEe-eCCceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEe-----ccCCCCceEEE
Q 020784          160 IWDDHQSR-------CIGELS-FRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIE-----TIANPKGLCAV  222 (321)
Q Consensus       160 iWD~~~~~-------~~~~~~-~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~-----~~~~~~~~~~~  222 (321)
                      |||+.+..       ....+. +...|.++.|.++   .++.++ |++|++||+.+++.+..+.     +|...+..+++
T Consensus       134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred             EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence            99986532       122233 3346788888763   355554 5799999999999888873     34443334444


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      ++ .++.+++ +|+.||.|++||+..  ..+.++.+|.+.|++|+|+|+|.+|||||.||+ |||||+++++++..+...
T Consensus       214 ~~-~~~~~l~-sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~  290 (380)
T 3iz6_a          214 NS-LNANMFI-SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYNRE  290 (380)
T ss_dssp             CS-SSCCEEE-EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEECCC
T ss_pred             ec-CCCCEEE-EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEeccc
Confidence            33 2456777 599999999999863  446789999999999999999999999999999 999999999999888643


Q ss_pred             Cc--------ceeEEEeecCceEEEee
Q 020784          301 SI--------SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       301 ~~--------~~~~~~s~d~~~la~~~  319 (321)
                      ..        ...++|+++|++|+++.
T Consensus       291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~  317 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSISGRLLFAGY  317 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred             ccccccccCceEEEEECCCCCEEEEEE
Confidence            22        23458889999998753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=9.6e-29  Score=225.51  Aligned_cols=227  Identities=15%  Similarity=0.151  Sum_probs=173.4

Q ss_pred             CCCCC-CeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeee--ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPP-TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~-~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|.. .|++++|+|||++||+|+.|+ |+|||++..........  .|.+.|..++++++++.+++++       .|++
T Consensus        12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s-------~D~~   84 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS-------FDAT   84 (345)
T ss_dssp             CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE-------CCCc
Confidence            35655 899999999999999998755 89999988764332221  2678899999999999999888       6899


Q ss_pred             EEEEeCCCCc--EEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCc---EEEEEEeccCCCCceEEEeeCCCc
Q 020784          158 VMIWDDHQSR--CIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGS  228 (321)
Q Consensus       158 v~iWD~~~~~--~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~---~~~~~l~~~~~~~~~~~~s~~~d~  228 (321)
                      |+|||...+.  ++..+..+ ..|.+++|+++  .++.++ ++.|++||+..+   +.+..+..|...+..+++++  ++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~  162 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP--SQ  162 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS--SS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC--CC
Confidence            9999988764  45566544 58999999975  455554 579999999764   45666777766655555555  55


Q ss_pred             eEEEeecCCCCcEEEEeeCCcc---eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC---------------
Q 020784          229 LVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD---------------  290 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~~~---~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t---------------  290 (321)
                      .+|+ +|+.||.|++|+.....   ..++.+|...|++|+|+|+|++||+||.|++ |||||+..               
T Consensus       163 ~~l~-s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~  240 (345)
T 3fm0_A          163 ELLA-SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPS  240 (345)
T ss_dssp             SCEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CE
T ss_pred             CEEE-EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCc
Confidence            7777 59999999999987653   3578999999999999999999999999999 99999732               


Q ss_pred             CcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          291 GTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       291 g~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      .+++.++...|...+  +.+++++.+|+.+.
T Consensus       241 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  271 (345)
T 3fm0_A          241 WKCICTLSGFHSRTIYDIAWCQLTGALATAC  271 (345)
T ss_dssp             EEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred             cceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence            245556643344433  46677778887653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.8e-28  Score=223.20  Aligned_cols=225  Identities=10%  Similarity=0.086  Sum_probs=177.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCce--eEEeee-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--IFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~--~~~~~~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|...|.+++|+|+|++|++|+.++ ++||++.+...  .....+ .|.+.+.++.+..++. +++++       .|++
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s-------~d~~  165 (340)
T 1got_B           94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSS-------GDTT  165 (340)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEE-------TTSC
T ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEE-------CCCc
Confidence            45677899999999999999998866 77999976531  112222 1677888888876654 55655       5799


Q ss_pred             EEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          158 VMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      |++||+++++.+..+..+ ..|.+++|+++.  ++++. ++.|++||+++++.+.++..|...+..+++++  ++.+++ 
T Consensus       166 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~-  242 (340)
T 1got_B          166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP--NGNAFA-  242 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT--TSSEEE-
T ss_pred             EEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC--CCCEEE-
Confidence            999999999988888754 589999999864  44444 57999999999999999998877666666655  557887 


Q ss_pred             ecCCCCcEEEEeeCCcc-eEEee--ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEE
Q 020784          234 PGLQKGQVRVEHYASKR-TKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGL  308 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~~~l~--~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~  308 (321)
                      +|+.||.|++||+.... +..+.  .+...|++++|+|+|++|++|+.||+ |+|||+.+++++.++. +|...+  +.+
T Consensus       243 s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~-~h~~~v~~~~~  320 (340)
T 1got_B          243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA-GHDNRVSCLGV  320 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE-CCSSCEEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEee-cCCCcEEEEEE
Confidence            59999999999998755 33443  23457999999999999999999999 9999999999999885 666544  477


Q ss_pred             eecCceEEEee
Q 020784          309 WLSSAWLRVLR  319 (321)
Q Consensus       309 s~d~~~la~~~  319 (321)
                      +++|++||.+.
T Consensus       321 s~dg~~l~s~s  331 (340)
T 1got_B          321 TDDGMAVATGS  331 (340)
T ss_dssp             CTTSSCEEEEE
T ss_pred             cCCCCEEEEEc
Confidence            78899998864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=4.7e-29  Score=224.87  Aligned_cols=228  Identities=16%  Similarity=0.121  Sum_probs=167.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEec--CCCeEEEEeCCCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLF--RCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~--~~~~~~~~sg~~~~~~~d~  156 (321)
                      ...|...|++++|++||++||+|+.|+ |+|||+.+.+......+. |.+.|..+++.+  +++.+++++       .|+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s-------~D~   81 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS-------YDR   81 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE-------TTS
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE-------CCC
Confidence            457888999999999999999999865 889999887543222222 788999999975  378888887       689


Q ss_pred             cEEEEeCCCCc--EEEEEe-eCCceeEEEEeCC----eEEEEE-CCEEEEEEcCCcE---EEEEEeccCCCCceEEEeeC
Q 020784          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLK---LLHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       157 ~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~~~~~~-~~~I~iwd~~~~~---~~~~l~~~~~~~~~~~~s~~  225 (321)
                      +|+|||++++.  .+..+. +...|.+++|+++    .++++. ++.|++||++...   ....+..|...+..++++++
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            99999999874  444554 3458999999875    345444 5799999997653   23334456556666676664


Q ss_pred             C---------------CceEEEeecCCCCcEEEEeeCCc----ceEEeeccccceeEEEECCCC----CEEEEEeCCCcE
Q 020784          226 V---------------GSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDG----QLLATSSTKGTL  282 (321)
Q Consensus       226 ~---------------d~~~la~sGs~dg~V~i~d~~~~----~~~~l~~H~~~V~~vafspdg----~~las~S~Dgt~  282 (321)
                      .               ++.+|+ +|+.||.|++||....    .+..+.+|...|++|+|+|++    .+|||||.||+ 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-  239 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-  239 (316)
T ss_dssp             CCC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-
T ss_pred             cCCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-
Confidence            2               134666 6999999999998743    355789999999999999987    89999999999 


Q ss_pred             EEEEEcCCC-------cEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          283 VRIFNTLDG-------TLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       283 IrIWd~~tg-------~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      |+|||+.++       +.+..+  ......+.+++++++||++.
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~  281 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSG  281 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEc
Confidence            999999873       233222  22334557889999998864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=4.6e-28  Score=224.82  Aligned_cols=225  Identities=14%  Similarity=0.136  Sum_probs=174.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeee-----------------cCCceEEEEEecCCCeEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-----------------RGGGIGVVEMLFRCNILALV  145 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~-----------------~~~~v~~v~~~~~~~~~~~~  145 (321)
                      .|...|+|++|+|||++||+|+++.++||++.+++.+......                 +...|..++++++++.++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            4788999999999999999999889999999888765444320                 01137889999999999888


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEE
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~  221 (321)
                      +       .|++|+|||+.+++.+..+..+ ..|.+++|+++  .++.++ +++|++||+++++....+..+ ..+..++
T Consensus       142 ~-------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~  213 (393)
T 1erj_A          142 A-------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVA  213 (393)
T ss_dssp             E-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred             c-------CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-CCcEEEE
Confidence            7       6799999999999988887754 57999999875  455554 579999999999988887643 3334445


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcce-EEe-------eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC--
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI-------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--  291 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~l-------~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg--  291 (321)
                      +++. ++.+++ +|+.||.|++||..++.. ..+       .+|...|++++|+|+|++||+|+.||+ |+|||++++  
T Consensus       214 ~~~~-~~~~l~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~  290 (393)
T 1erj_A          214 VSPG-DGKYIA-AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANN  290 (393)
T ss_dssp             ECST-TCCEEE-EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-----
T ss_pred             EECC-CCCEEE-EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCC
Confidence            5442 557777 599999999999887653 344       579999999999999999999999999 999999864  


Q ss_pred             ----------cEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          292 ----------TLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       292 ----------~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                                .+..++ .+|...+  +.+++++++|+.+.
T Consensus       291 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs  329 (393)
T 1erj_A          291 KSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGS  329 (393)
T ss_dssp             ----------CEEEEE-ECCSSCEEEEEECGGGCEEEEEE
T ss_pred             cccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEe
Confidence                      445555 3555444  46677889988754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=6.9e-28  Score=217.46  Aligned_cols=223  Identities=10%  Similarity=0.111  Sum_probs=178.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|++||++|++|+.|+ |+|||+.+++....... |.+.|..+++.+++..+++++       .|++|++
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s-------~D~~i~v  133 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGS-------RDKTIKV  133 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEE-------TTSCEEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEe-------CCCeEEE
Confidence            46888999999999999999998755 88999999887655554 788999999999999888887       6899999


Q ss_pred             EeCCCCcEEEEEe-eCCceeEEEEeCC--------eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          161 WDDHQSRCIGELS-FRSEVRSVKLRRD--------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       161 WD~~~~~~~~~~~-~~~~v~~v~~~~~--------~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ||++.. ++..+. +...|.++.+.+.        .++.+. ++.|++||+++++....+.+|...+..+++++  ++.+
T Consensus       134 wd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp--~g~~  210 (319)
T 3frx_A          134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--DGTL  210 (319)
T ss_dssp             EETTSC-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT--TSSE
T ss_pred             EECCCC-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC--CCCE
Confidence            999754 444444 4457899998764        344444 56999999999999999988877666666655  5688


Q ss_pred             EEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC-------c
Q 020784          231 LVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS-------I  302 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~-------~  302 (321)
                      |+ +|+.||.|++||+..+.. .++. +...|.+++|+|+|.+||+++ ++. |+||++..+.++..++...       .
T Consensus       211 l~-s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~-~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~  286 (319)
T 3frx_A          211 IA-SAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAAT-ATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE  286 (319)
T ss_dssp             EE-EEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEE-TTE-EEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred             EE-EEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEc-CCC-cEEEEeCcCeeeeccCccccccccCcC
Confidence            88 599999999999987664 4555 456899999999999999887 556 9999999998888775321       1


Q ss_pred             --ceeEEEeecCceEEEee
Q 020784          303 --SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       303 --~~~~~~s~d~~~la~~~  319 (321)
                        ...+++++||++|+.+.
T Consensus       287 ~~v~~~~~spdg~~l~sg~  305 (319)
T 3frx_A          287 PHAVSLAWSADGQTLFAGY  305 (319)
T ss_dssp             CCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEEECCCCCEEEEee
Confidence              22458889999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=6e-28  Score=216.19  Aligned_cols=224  Identities=13%  Similarity=0.203  Sum_probs=181.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|+|++|++|+.++ ++||+..+++....... |...+..++++++++.+++++       .|+.|++
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~-------~d~~i~v   91 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSAS-------DDKTLKI   91 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEEC-------CCCEEEE
Confidence            57888999999999999999998765 88999988876655544 678899999999999998888       6799999


Q ss_pred             EeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ||+++++++..+..+ ..|.++.|+++  .++++. ++.|++||+++++.+..+..|..++..+++++  ++.+++ +|+
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~-~~~  168 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR--DGSLIV-SSS  168 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEE-EEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC--CCCEEE-EEe
Confidence            999999988888755 47999999875  455554 57999999999999999988876655555554  557777 589


Q ss_pred             CCCcEEEEeeCCcc-eEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce----eEEEe-
Q 020784          237 QKGQVRVEHYASKR-TKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA----QSGLW-  309 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~~~l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~----~~~~s-  309 (321)
                      .||.|++||+..+. +..+ ..|...|.+++|+|+|++|++++.||. |+|||+++++++.++. ++...    ...++ 
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~  246 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYT-GHKNEKYCIFANFSV  246 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEEC-SSCCSSSCCCEEEEC
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEE-ecCCceEEEEEEEEe
Confidence            99999999998765 3444 457788999999999999999999999 9999999999999885 33321    12333 


Q ss_pred             ecCceEEEe
Q 020784          310 LSSAWLRVL  318 (321)
Q Consensus       310 ~d~~~la~~  318 (321)
                      .++++|+.+
T Consensus       247 ~~~~~l~sg  255 (312)
T 4ery_A          247 TGGKWIVSG  255 (312)
T ss_dssp             SSSCEEEEC
T ss_pred             CCCcEEEEE
Confidence            567777764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=3.1e-29  Score=230.13  Aligned_cols=200  Identities=12%  Similarity=0.049  Sum_probs=163.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCC-eEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|...|++++|+|||++|++|+.++ |+|||+.+.+....... |.+.+..++++++++ .+++++       .|++|+
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~-------~dg~v~  207 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDTIFLSCG-------EDGRIL  207 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSSCEEEEE-------TTSCEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCceeeeec-------cCCceE
Confidence            46888999999999999999998865 88999999887766654 678899999988775 555555       679999


Q ss_pred             EEeCCCCcEEEEEee---CCceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          160 IWDDHQSRCIGELSF---RSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       160 iWD~~~~~~~~~~~~---~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      |||+++++.+..+..   ...+.+++|+++   .++++. ++.|++||+++++.++++..+...+..++|++++ ..+||
T Consensus       208 ~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~la  286 (357)
T 4g56_B          208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS-SPFLA  286 (357)
T ss_dssp             ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS-SCCEE
T ss_pred             EEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC-CCEEE
Confidence            999999887665543   346899999864   344444 4699999999999999999888777777776653 24666


Q ss_pred             eecCCCCcEEEEeeCCcceEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                       +|+.||+|+|||..++++....+|.+.|++|+|+| ++.+|||||.||+ |+|||+.+..
T Consensus       287 -sgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~-v~iW~~~~~~  345 (357)
T 4g56_B          287 -SISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHK-VLHHHLPSEG  345 (357)
T ss_dssp             -EEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEECC---
T ss_pred             -EEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCe-EEEEECCCCC
Confidence             59999999999999888777779999999999998 7999999999999 9999997643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8.8e-28  Score=217.86  Aligned_cols=229  Identities=12%  Similarity=0.107  Sum_probs=179.5

Q ss_pred             ccCCCCCCeEEEEEcCC---CCEEEEEcCCc-EEEEEecC-Ccee-EEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQD---HGCFAAGTDHG-FRIYNCDP-FREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~d---g~~lasg~~~g-v~vw~~~~-~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      ....|.+.|++++|+|+   |++|++|+.++ |+|||+.+ .... ..... |.+.|..++++++++.+++++       
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~-------  105 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTAS-------  105 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEE-------
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEc-------
Confidence            34678899999999999   69999999865 88999987 3333 22222 788999999999999998887       


Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCceeEEEE--eCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCC-------------
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKL--RRDR--IIVVL-EQKIFVYNFADLKLLHQIETIAN-------------  215 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~--~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~-------------  215 (321)
                      .|+.|++||+++++.+....+...|.+++|  +++.  ++++. ++.|++||+++++.+..+..+..             
T Consensus       106 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV  185 (368)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred             CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence            679999999999998887778889999999  6654  44444 57999999998887777664431             


Q ss_pred             ----------------------------CCceEEEeeCCCc--eEEEeecCCCCcEEEEeeCCc----ceEEeecccc--
Q 020784          216 ----------------------------PKGLCAVSQGVGS--LVLVCPGLQKGQVRVEHYASK----RTKFIMAHDS--  259 (321)
Q Consensus       216 ----------------------------~~~~~~~s~~~d~--~~la~sGs~dg~V~i~d~~~~----~~~~l~~H~~--  259 (321)
                                                  ...++++..+...  ..++ +|+.||.|++|++...    .+..+.+|..  
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA-LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE-EEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE-EecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence                                        1122333333221  2255 5899999999998764    3567888877  


Q ss_pred             ----------ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEeecCceEEEee
Q 020784          260 ----------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       260 ----------~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s~d~~~la~~~  319 (321)
                                .|++++|+|+|++||+|+.||. |+|||+.+++++.++. ++..  ..++++++|++|+++.
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEe
Confidence                      7999999999999999999999 9999999999999885 4443  3458889999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=8.9e-28  Score=220.04  Aligned_cols=224  Identities=9%  Similarity=0.074  Sum_probs=180.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCC------ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~------~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      .|...|.+++|+|+|.+||+|+.++ +++|++...      ........ |.+.+..+.+.+++..+++++       .|
T Consensus       104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s-------~D  175 (354)
T 2pbi_B          104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM-HTNYLSACSFTNSDMQILTAS-------GD  175 (354)
T ss_dssp             CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE-CSSCEEEEEECSSSSEEEEEE-------TT
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec-cCCcEEEEEEeCCCCEEEEEe-------CC
Confidence            4566899999999999999999866 779998543      12222222 688899999999998888888       67


Q ss_pred             CcEEEEeCCCCcEEEEEeeC-CceeEEEEeC----CeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCce
Q 020784          156 NKVMIWDDHQSRCIGELSFR-SEVRSVKLRR----DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~----~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      ++|++||+++++.+..+..+ ..|.++.+++    +.++.++ ++.|++||+++++.++.+..|...+..+++++  ++.
T Consensus       176 ~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~  253 (354)
T 2pbi_B          176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP--SGD  253 (354)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSS
T ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC--CCC
Confidence            99999999999998888755 4788888865    3455555 57999999999999999988877666666655  557


Q ss_pred             EEEeecCCCCcEEEEeeCCcc-eEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee-
Q 020784          230 VLVCPGLQKGQVRVEHYASKR-TKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ-  305 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~-~~~l~~--H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~-  305 (321)
                      +++ +|+.||+|++||+.... +..+..  +...+++++|+|+|++|++|+.|++ |+|||+.+++++.++. +|...+ 
T Consensus       254 ~l~-s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~-~h~~~v~  330 (354)
T 2pbi_B          254 AFA-SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILF-GHENRVS  330 (354)
T ss_dssp             EEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEEC-CCSSCEE
T ss_pred             EEE-EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEE-CCCCcEE
Confidence            787 59999999999998754 334443  3457899999999999999999999 9999999999998884 666544 


Q ss_pred             -EEEeecCceEEEee
Q 020784          306 -SGLWLSSAWLRVLR  319 (321)
Q Consensus       306 -~~~s~d~~~la~~~  319 (321)
                       +.+++||++|+.+.
T Consensus       331 ~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGS  345 (354)
T ss_dssp             EEEECTTSSCEEEEE
T ss_pred             EEEECCCCCEEEEEc
Confidence             47788999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-27  Score=216.33  Aligned_cols=225  Identities=15%  Similarity=0.177  Sum_probs=165.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCC-------ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      |...|++++|+|+|++||+|+.++ |+||++...       +....... |.+.|..++++++++.+++++       .|
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las~s-------~D  128 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLATCS-------RD  128 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEE-------TT
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCCEEEEEe-------CC
Confidence            788999999999999999998755 889998532       22222222 678899999999999999888       68


Q ss_pred             CcEEEEeCCCC----cEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCc--EEEEEEeccCCCCceEEEeeC
Q 020784          156 NKVMIWDDHQS----RCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       156 ~~v~iWD~~~~----~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~--~~~~~l~~~~~~~~~~~~s~~  225 (321)
                      ++|+|||++..    +++..+..+ ..|.++.|+++  .++.++ +++|++||+.++  +++..+.+|...+..++++++
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence            99999999432    455556544 57999999875  455554 579999999765  678888888887777777776


Q ss_pred             CCceEEEeecCCCCcEEEEeeCCc---------ceEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc--E
Q 020784          226 VGSLVLVCPGLQKGQVRVEHYASK---------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--L  293 (321)
Q Consensus       226 ~d~~~la~sGs~dg~V~i~d~~~~---------~~~~l~~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~--~  293 (321)
                      .++..|+ +|+.||+|++|++...         ....+.+ |...|++|+|++++ +||+++.||+ |+|||+.+++  +
T Consensus       209 ~~~~~l~-s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~  285 (330)
T 2hes_X          209 EGVFRLC-SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKV  285 (330)
T ss_dssp             SSSCEEE-EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEE
T ss_pred             CCeeEEE-EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEE
Confidence            5466777 5999999999998643         2334554 99999999999765 7999999999 9999999884  4


Q ss_pred             EEEEeCCCcc-ee--EEEee--cCceEEEee
Q 020784          294 LQEECCPSIS-AQ--SGLWL--SSAWLRVLR  319 (321)
Q Consensus       294 i~~~~~g~~~-~~--~~~s~--d~~~la~~~  319 (321)
                      +.....+|.. .+  +.+++  ++++||.+.
T Consensus       286 ~~~~~~~h~~~~v~~v~~~~~~~~~~las~s  316 (330)
T 2hes_X          286 FAKRALCHGVYEINVVKWLELNGKTILATGG  316 (330)
T ss_dssp             EEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred             EeccccccccceEEEEEEecCCCceEEEEec
Confidence            4444345554 33  35555  678888764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=1.9e-26  Score=206.85  Aligned_cols=225  Identities=9%  Similarity=0.141  Sum_probs=183.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .|...|++++|+|+|++|++|+.++ +++||+.+.+......+. |...+..++++++++.+++++       .|+.|++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~v~~  167 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-------SDGNIAV  167 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe-------CCCcEEE
Confidence            5778999999999999999998755 889999887633333221 567899999999999888887       6799999


Q ss_pred             EeCCCCcEEEEEee-CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ||+++++.+..+.. ...|.+++|+++  .++++. ++.|++||+++++.+..+.. ...  +.++...+++.++++ |+
T Consensus       168 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~--v~~~~~s~~~~~l~~-~~  243 (337)
T 1gxr_A          168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TSQ--IFSLGYCPTGEWLAV-GM  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSC--EEEEEECTTSSEEEE-EE
T ss_pred             EeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-CCc--eEEEEECCCCCEEEE-Ec
Confidence            99999998888774 458999999875  455555 56999999999998888753 233  444555556688884 88


Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      .+|.|++|++.......+..|...|++++|+|+|++|++++.||. |+|||+.+++.+...........+.+++++++|+
T Consensus       244 ~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  322 (337)
T 1gxr_A          244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSCEEEEEECTTSCEEE
T ss_pred             CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEecCCCcEEEEEECCCCCEEE
Confidence            899999999998888889999999999999999999999999999 9999999999987775555555668889999998


Q ss_pred             Eee
Q 020784          317 VLR  319 (321)
Q Consensus       317 ~~~  319 (321)
                      ++.
T Consensus       323 ~~~  325 (337)
T 1gxr_A          323 TGS  325 (337)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=1.1e-27  Score=237.87  Aligned_cols=228  Identities=14%  Similarity=0.097  Sum_probs=180.4

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCce-----eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      ..|.+.|++|+|++++ ++|++|+.|+ |+||++.....     ...... |.+.|..++++++++.+++++       .
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs-------~  450 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGS-------W  450 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEe-------C
Confidence            5799999999999875 7899998765 88999875421     122222 788899999999999998888       6


Q ss_pred             CCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEE---eccCCCCceEEEeeCCC
Q 020784          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVG  227 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l---~~~~~~~~~~~~s~~~d  227 (321)
                      |++|+|||+.++..+..+..+ ..|.+++|+++  .++.++ +++|++||+.........   ..|...+.++++++++.
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            899999999999988887654 58999999875  455555 579999998765443322   23444455666666544


Q ss_pred             ceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE
Q 020784          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS  306 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~  306 (321)
                      ...++ +|+.||.|++||+.... ..++.+|.+.|++|+|+|+|++||||+.||+ |+|||+++++++.++........+
T Consensus       531 ~~~l~-s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~  608 (694)
T 3dm0_A          531 QPTIV-SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLEANSVIHAL  608 (694)
T ss_dssp             SCEEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCBCSSCEEEE
T ss_pred             cceEE-EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEecCCCcEEEE
Confidence            45666 59999999999998765 5589999999999999999999999999999 999999999999888655445556


Q ss_pred             EEeecCceEEEee
Q 020784          307 GLWLSSAWLRVLR  319 (321)
Q Consensus       307 ~~s~d~~~la~~~  319 (321)
                      ++++++.+|+.+.
T Consensus       609 ~~sp~~~~l~~~~  621 (694)
T 3dm0_A          609 CFSPNRYWLCAAT  621 (694)
T ss_dssp             EECSSSSEEEEEE
T ss_pred             EEcCCCcEEEEEc
Confidence            8889999987753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=5.4e-27  Score=211.09  Aligned_cols=229  Identities=13%  Similarity=0.096  Sum_probs=179.7

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecCCcee---EEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFREI---FRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~~~~~---~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      .++|.+.|++|+|+|+ +++||+|+.|+ |+|||+.+.+..   ....+. |.+.|..++++++++.+++++       .
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-------~  106 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-------W  106 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-------c
Confidence            3679999999999998 68999998765 899999765421   122221 678899999999999998888       6


Q ss_pred             CCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEE-EEeccCCCCceEEEeeCCCce
Q 020784          155 LNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~-~l~~~~~~~~~~~~s~~~d~~  229 (321)
                      |+.|++|+.............. .+..+.+.+.  .++.+. ++.+++||+....... .+..|...+..+++++++...
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            8999999999888766665443 5666666653  455554 5799999997655433 234455666677787777666


Q ss_pred             EEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEE
Q 020784          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGL  308 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~  308 (321)
                      +++ +|+.|+.|++||..... ...+.+|.+.|++|+|+|+|++||+|+.||+ |+|||+++++++..+........+.+
T Consensus       187 ~~~-s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~  264 (340)
T 4aow_A          187 IIV-SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCF  264 (340)
T ss_dssp             EEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             EEE-EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeec
Confidence            776 58999999999998765 5688999999999999999999999999999 99999999999999976555555677


Q ss_pred             eecCceEEEe
Q 020784          309 WLSSAWLRVL  318 (321)
Q Consensus       309 s~d~~~la~~  318 (321)
                      ++++.+++.+
T Consensus       265 ~~~~~~~~~~  274 (340)
T 4aow_A          265 SPNRYWLCAA  274 (340)
T ss_dssp             CSSSSEEEEE
T ss_pred             CCCCceeecc
Confidence            7887777654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=6e-28  Score=236.69  Aligned_cols=223  Identities=13%  Similarity=0.089  Sum_probs=177.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      +++.+.+++|+|||++||+++++.++||++.+.+....... |.+.|.+++++++++++++++       .|++|+|||+
T Consensus        17 ~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~lasg~-------~d~~v~lWd~   88 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGD-------VHGNVRIWDT   88 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEEEES
T ss_pred             ccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecC-CCCceEEEEECCCCcEEEEEe-------CCCCEEEeEC
Confidence            45578889999999999999988899999987766555544 788999999999999999988       6899999999


Q ss_pred             CCCc--EEEEEe-eCCceeEEEEeCCe--EEEEECC-----EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          164 HQSR--CIGELS-FRSEVRSVKLRRDR--IIVVLEQ-----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       164 ~~~~--~~~~~~-~~~~v~~v~~~~~~--~~~~~~~-----~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      .+++  ...++. +...|.+++|+++.  ++++.++     .|++||.  ++.+.++.+|...+..++|++++. ..|+ 
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~-~~l~-  164 (611)
T 1nr0_A           89 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRP-FRII-  164 (611)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSS-CEEE-
T ss_pred             CCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCC-eEEE-
Confidence            7544  344454 34589999999864  4555432     6778874  455667788877766677766432 2455 


Q ss_pred             ecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC------CCccee-
Q 020784          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC------PSISAQ-  305 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~------g~~~~~-  305 (321)
                      +|+.|++|++||..... ..++.+|...|++++|+|||++|||||.|++ |+|||+.+|+++.++..      +|...+ 
T Consensus       165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECCCCcEeeeeccccccccccCCCEE
Confidence            69999999999987654 5689999999999999999999999999999 99999999999998853      566544 


Q ss_pred             -EEEeecCceEEEee
Q 020784          306 -SGLWLSSAWLRVLR  319 (321)
Q Consensus       306 -~~~s~d~~~la~~~  319 (321)
                       +.+++||++|+.+.
T Consensus       244 ~v~~spdg~~l~s~s  258 (611)
T 1nr0_A          244 GLTWSPDGTKIASAS  258 (611)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence             47778999998864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.1e-27  Score=213.38  Aligned_cols=230  Identities=17%  Similarity=0.132  Sum_probs=171.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecC--CCeEEEEeCCCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPLN  156 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~d~  156 (321)
                      ...|...|++++|+|||++||+|+.++ |+||++..........+. |.+.|..++++++  ++.+++++       .|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-------~dg   79 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDG   79 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTS
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-------cCC
Confidence            456888999999999999999998755 889999854333333332 6788999999876  78888887       679


Q ss_pred             cEEEEeCCCCc--EEEEEe-eCCceeEEEEeCC----eEEEEE-CCEEEEEEcCCcE--EEEEEeccCCCCceEEEeeCC
Q 020784          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       157 ~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~~~~~~-~~~I~iwd~~~~~--~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      .|++||+++++  .+..+. +...|.+++|+++    .++++. ++.|++||+++.+  ....+..|...+..+++++..
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999987  444444 3458999999976    355554 5799999998763  333455565555555555521


Q ss_pred             -----------CceEEEeecCCCCcEEEEeeCCcc-----eEEeeccccceeEEEECCC---CCEEEEEeCCCcEEEEEE
Q 020784          227 -----------GSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       227 -----------d~~~la~sGs~dg~V~i~d~~~~~-----~~~l~~H~~~V~~vafspd---g~~las~S~Dgt~IrIWd  287 (321)
                                 ++.+++ +|+.||.|++||+....     ...+.+|...|++++|+|+   +.+||+++.||+ |+|||
T Consensus       160 ~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd  237 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWT  237 (379)
T ss_dssp             ----------CTTCEEE-EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEE
T ss_pred             ccccccccCCCCCCEEE-EEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEe
Confidence                       457777 48999999999987542     3478899999999999999   899999999999 99999


Q ss_pred             cCCCc---EEEEEeC-CCcc--eeEEEeecCceEEEee
Q 020784          288 TLDGT---LLQEECC-PSIS--AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       288 ~~tg~---~i~~~~~-g~~~--~~~~~s~d~~~la~~~  319 (321)
                      +++++   ....+.. ++..  ..+.+++++++|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence            99874   2222221 1332  3447788999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=6.6e-27  Score=226.11  Aligned_cols=221  Identities=17%  Similarity=0.222  Sum_probs=179.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|||++|++|+.++ +++|+.. .+....... |...+..++++++++.+++++       .|+.|++
T Consensus       341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~-------~d~~v~~  411 (577)
T 2ymu_A          341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASAS-------DDKTVKL  411 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEEC-CSSCEEEEEECTTSSCEEEEE-------TTSEEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecC-CCCCeEEEEECCCCCEEEEEe-------CCCEEEE
Confidence            45778999999999999999999866 7899954 444434333 678899999999999998887       6799999


Q ss_pred             EeCCCCcEEEEEee-CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ||. +++.+..+.. ...|.+++|+++  .++++. ++.|++||. +++.+..+..|...+..+++++  ++.+|| +|+
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp--d~~~la-s~~  486 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP--DGQTIA-SAS  486 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT--TSCEEE-EEE
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC--CCCEEE-EEe
Confidence            995 4566666654 458999999875  455554 469999996 4677888888877666666655  568888 589


Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCce
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAW  314 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~  314 (321)
                      .||.|++|+...+.+..+.+|...|++|+|+|||++||+++.||+ |+|||+ +|++++++. +|...+  +.|++||++
T Consensus       487 ~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~  563 (577)
T 2ymu_A          487 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQT  563 (577)
T ss_dssp             TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSC
T ss_pred             CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCE
Confidence            999999999877778899999999999999999999999999999 999995 789999985 666544  478899999


Q ss_pred             EEEee
Q 020784          315 LRVLR  319 (321)
Q Consensus       315 la~~~  319 (321)
                      |+.+.
T Consensus       564 l~s~~  568 (577)
T 2ymu_A          564 IASAS  568 (577)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=6.1e-29  Score=227.93  Aligned_cols=223  Identities=12%  Similarity=0.040  Sum_probs=164.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc--eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .+.++|++++|+|||++||+|+.++ |+|||+.+..  ....... |.+.|..++++++++.+++++       .|++|+
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s-------~d~~v~   80 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCS-------QDRNAY   80 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEE-------TTSSEE
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEe-------CCCeEE
Confidence            3556899999999999999997755 8899999873  3333332 678899999999999998888       679999


Q ss_pred             EEeCCCCc---EEEEE-eeCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcE---EEEEEec-cCCCCceEEEeeCCCc
Q 020784          160 IWDDHQSR---CIGEL-SFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLK---LLHQIET-IANPKGLCAVSQGVGS  228 (321)
Q Consensus       160 iWD~~~~~---~~~~~-~~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~---~~~~l~~-~~~~~~~~~~s~~~d~  228 (321)
                      |||+.+++   ....+ .+...|.+++|+++  .++++. ++.|++||+++++   ..+.+.. |...+..++++  +++
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~  158 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH--PNN  158 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEEC--TTS
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEc--CCC
Confidence            99999876   33333 35568999999875  455555 5799999998876   3667776 65555555554  466


Q ss_pred             eEEEeecCCCCcEEEEeeCC-------------------cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          229 LVLVCPGLQKGQVRVEHYAS-------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       229 ~~la~sGs~dg~V~i~d~~~-------------------~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      .+|+ +|+.||.|++||+..                   ..+..+ +|...|++++|+|+|++||+++.||+ |+|||+.
T Consensus       159 ~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~  235 (377)
T 3dwl_C          159 VLLA-AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPS  235 (377)
T ss_dssp             SEEE-EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEEC
T ss_pred             CEEE-EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECC
Confidence            7887 489999999999851                   223455 99999999999999999999999999 9999999


Q ss_pred             CCcE----EEEEeCCCcc--eeEEEeecCceEEEee
Q 020784          290 DGTL----LQEECCPSIS--AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       290 tg~~----i~~~~~g~~~--~~~~~s~d~~~la~~~  319 (321)
                      ++++    +.++. ++..  ..+.+++++++|+.+.
T Consensus       236 ~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          236 APEQPPRALITVK-LSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             STTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEES
T ss_pred             CCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEc
Confidence            9987    66664 4443  3457889999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=1.2e-26  Score=207.83  Aligned_cols=227  Identities=13%  Similarity=0.184  Sum_probs=179.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|...|.+++|+|+|++|++|+.++ ++|||+.+.+....... |...+..+.+.++++.+++++       .|++|+
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~-------~d~~i~  132 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGS-------FDESVR  132 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE-------TTSCEE
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-------CCCcEE
Confidence            356778999999999999999998865 88999999887665554 678899999999999998887       679999


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +||+++++.+..+..+ ..|.++.|+++  .++++. ++.|++||+++++.+..+..+.. ..+..+..++++.+++ +|
T Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~  210 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYIL-AA  210 (312)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC-CCEEEEEECTTSSEEE-EE
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC-CceEEEEECCCCCEEE-EE
Confidence            9999999988887654 57999999875  355554 57999999999988887754322 2233344455667887 48


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEE--EEC-CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeE--EEe
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACF--ALT-QDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQS--GLW  309 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~v--afs-pdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~s  309 (321)
                      +.||.|++||+.... +..+.+|...+.++  .|+ +++.+|++|+.||+ |+|||+++++++.++. +|...+.  .++
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~-~h~~~v~~~~~~  288 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQ-GHTDVVISTACH  288 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEEC-CCSSCEEEEEEC
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhh-ccCCcEEEEeec
Confidence            999999999998765 56788887764433  344 77899999999999 9999999999999985 5655443  667


Q ss_pred             ecCceEEEee
Q 020784          310 LSSAWLRVLR  319 (321)
Q Consensus       310 ~d~~~la~~~  319 (321)
                      +++.+|+.+.
T Consensus       289 p~~~~l~s~~  298 (312)
T 4ery_A          289 PTENIIASAA  298 (312)
T ss_dssp             SSSSEEEEEE
T ss_pred             CcCCceEEEE
Confidence            8889998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-26  Score=210.17  Aligned_cols=224  Identities=12%  Similarity=0.101  Sum_probs=164.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc--eeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~--~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|...|++++|+++  +||+|+.++ |+|||+....  ........ |.+.|..++++++++.+++++       .|++
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-------~D~~   81 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-------FDST   81 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe-------CCCc
Confidence            468889999999998  899888755 8899998753  22222111 577899999999999998888       6899


Q ss_pred             EEEEeCCC-------CcEEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCC----cEEEEEEeccCCCCceEEE
Q 020784          158 VMIWDDHQ-------SRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFAD----LKLLHQIETIANPKGLCAV  222 (321)
Q Consensus       158 v~iWD~~~-------~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~----~~~~~~l~~~~~~~~~~~~  222 (321)
                      |+|||.+.       .+.+..+..+ ..|.+++|+++  .++.++ +++|++||++.    .+.+..+..|...+..+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            99999853       2345555543 57999999976  455555 57999999942    3677788888776655666


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCCc---ceEEeeccccceeEEEECCC--CCEEEEEeCCCcEEEEEEcCCC------
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDG------  291 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~~---~~~~l~~H~~~V~~vafspd--g~~las~S~Dgt~IrIWd~~tg------  291 (321)
                      ++  ++.+|+ +|+.||+|++|+....   .+.++.+|.+.|++++|+|+  +.+||||+.|++ |||||+.++      
T Consensus       162 ~p--~~~~l~-s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          162 HP--SEALLA-SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             CS--SSSEEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSCE
T ss_pred             CC--CCCEEE-EEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccccc
Confidence            55  557887 5999999999998654   46689999999999999999  779999999999 999999875      


Q ss_pred             --cEEEEEeCCCcceeEEEee-cCceEEEe
Q 020784          292 --TLLQEECCPSISAQSGLWL-SSAWLRVL  318 (321)
Q Consensus       292 --~~i~~~~~g~~~~~~~~s~-d~~~la~~  318 (321)
                        ++...+...|...+.++++ ++.+|+.+
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~  267 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGFNGLIASV  267 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECTTSCEEEE
T ss_pred             eeEEeeecccccccceEEEEEcCCCEEEEE
Confidence              4555554335544443333 23455554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=8.5e-27  Score=212.18  Aligned_cols=224  Identities=11%  Similarity=0.032  Sum_probs=169.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|++.+|++|+.|+ |+|||+.+++....... |.+.|..++++++++.+++++       .|++|++
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~-------~d~~i~~  144 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAG-------AEREIKL  144 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEE-------TTSCEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEc-------CCCEEEE
Confidence            56888999999999999999999755 88999999887655554 688999999999999998887       6899999


Q ss_pred             EeCCCCcEEEEE---eeCCceeEEEEeCC------------eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEee
Q 020784          161 WDDHQSRCIGEL---SFRSEVRSVKLRRD------------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       161 WD~~~~~~~~~~---~~~~~v~~v~~~~~------------~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~  224 (321)
                      ||+.........   .+...|.++.|+++            .++.++ ++.|++|| .+.+....+..|...+..++++ 
T Consensus       145 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s-  222 (343)
T 2xzm_R          145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS-  222 (343)
T ss_dssp             EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC-
T ss_pred             EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEEC-
Confidence            999844332222   23446899999875            345554 57999999 4567778888887665555555 


Q ss_pred             CCCceEEEeecCCCCcEEEEeeC-CcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEE--EEe---
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EEC---  298 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~-~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~--~~~---  298 (321)
                       +++.+|+ +|+.||.|++||+. .........|...|++++|+|++++|+++ .|++ |+|||+.+++...  ++.   
T Consensus       223 -~~g~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~-v~iw~~~~~~~~~~~~~~~~~  298 (343)
T 2xzm_R          223 -PNGKYIA-TGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQG-VKIFNLMTQSKAPVCTIEAEP  298 (343)
T ss_dssp             -TTSSEEE-EEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSC-EEEEESSSCCSCSEEECCCCS
T ss_pred             -CCCCEEE-EEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCC-EEEEEeCCCCCCceEEeecCc
Confidence             4668888 59999999999984 33332333456679999999999988765 4888 9999999887544  332   


Q ss_pred             -------CCCcce--eEEEeecCceEEEee
Q 020784          299 -------CPSISA--QSGLWLSSAWLRVLR  319 (321)
Q Consensus       299 -------~g~~~~--~~~~s~d~~~la~~~  319 (321)
                             .++...  .++++++|++|+++.
T Consensus       299 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  328 (343)
T 2xzm_R          299 ITKAEGQKGKNPQCTSLAWNALGKKLFAGF  328 (343)
T ss_dssp             GGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred             chhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence                   134333  347788899998864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=1e-26  Score=208.41  Aligned_cols=202  Identities=13%  Similarity=0.134  Sum_probs=152.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCce----eEEeeeecCCceEEEEEec--CCCeEEEEeCCCCCC
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE----IFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQ  152 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~----~~~~~~~~~~~v~~v~~~~--~~~~~~~~sg~~~~~  152 (321)
                      +...|.+.|++++|+|+|++||+|+.++ |+|||+.+...    ...... |.+.|..+++++  +++.+++++      
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~------   78 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASAS------   78 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEE------
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEc------
Confidence            3467889999999999999999999866 88999987642    222222 678899999988  478888877      


Q ss_pred             CCCCcEEEEeCCCC---------cEEEEEe-eCCceeEEEEeCC----eEEEEE-CCEEEEEEcCCcEEEEEEe------
Q 020784          153 YPLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLKLLHQIE------  211 (321)
Q Consensus       153 ~~d~~v~iWD~~~~---------~~~~~~~-~~~~v~~v~~~~~----~~~~~~-~~~I~iwd~~~~~~~~~l~------  211 (321)
                       .|++|++||++++         +.+..+. +...|.+++|+++    .+++++ ++.|++||+++++.+..+.      
T Consensus        79 -~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           79 -YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             -TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             -CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence             6799999999876         4455554 3458999999975    455554 5799999998765544332      


Q ss_pred             -------ccCCCCceEEEeeCC-CceEEEeecCCCCcEEEEeeCCcc---eEEeeccccceeEEEECCCC----CEEEEE
Q 020784          212 -------TIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDG----QLLATS  276 (321)
Q Consensus       212 -------~~~~~~~~~~~s~~~-d~~~la~sGs~dg~V~i~d~~~~~---~~~l~~H~~~V~~vafspdg----~~las~  276 (321)
                             .+...+..++++++. ++.++++ |+.+|.+.+|+...+.   +..+.+|...|++++|+|++    .+||+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence                   233333444555431 1466764 8889999777766554   45788999999999999998    899999


Q ss_pred             eCCCcEEEEEEcCCC
Q 020784          277 STKGTLVRIFNTLDG  291 (321)
Q Consensus       277 S~Dgt~IrIWd~~tg  291 (321)
                      +.||+ |+|||++++
T Consensus       237 ~~dg~-i~iwd~~~~  250 (351)
T 3f3f_A          237 CKDGR-IRIFKITEK  250 (351)
T ss_dssp             ETTSC-EEEEEEEEC
T ss_pred             cCCCe-EEEEeCCCC
Confidence            99999 999999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=2.5e-26  Score=209.27  Aligned_cols=224  Identities=13%  Similarity=0.102  Sum_probs=175.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc--eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .|..+|++++|+|||++|++|+.++ |+|||+++.+  ....... |.+.+..++++++++.+++++       .|+.|+
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~-------~dg~i~   77 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCG-------TDRNAY   77 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEE-------TTSCEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEc-------CCCeEE
Confidence            4778999999999999999997655 8899999886  4433333 678999999999999998887       679999


Q ss_pred             EEeCCCCcEEEEEe---eCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcE---EEEEE-eccCCCCceEEEeeCCCce
Q 020784          160 IWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLK---LLHQI-ETIANPKGLCAVSQGVGSL  229 (321)
Q Consensus       160 iWD~~~~~~~~~~~---~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~---~~~~l-~~~~~~~~~~~~s~~~d~~  229 (321)
                      +||+++++....+.   +...|.+++|+++  .++++. ++.|++||+...+   ....+ ..|...  +.++.+.+++.
T Consensus        78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~  155 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST--VLSLDWHPNSV  155 (372)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC--EEEEEECTTSS
T ss_pred             EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC--eeEEEEcCCCC
Confidence            99999887655543   4558999999875  455555 4699999997654   23333 233343  44555555667


Q ss_pred             EEEeecCCCCcEEEEeeC------------------C-cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          230 VLVCPGLQKGQVRVEHYA------------------S-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~------------------~-~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +++ +|+.||.|++||+.                  . ..+..+.+|...|++++|+|+|.+|++++.||+ |+|||+++
T Consensus       156 ~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~  233 (372)
T 1k8k_C          156 LLA-AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADK  233 (372)
T ss_dssp             EEE-EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGG
T ss_pred             EEE-EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCC
Confidence            887 48999999999953                  2 345678899999999999999999999999999 99999999


Q ss_pred             CcEEEEEeCCCc-ceeEEEeecCceEEEe
Q 020784          291 GTLLQEECCPSI-SAQSGLWLSSAWLRVL  318 (321)
Q Consensus       291 g~~i~~~~~g~~-~~~~~~s~d~~~la~~  318 (321)
                      ++++.++..... ...+.+++++++|+++
T Consensus       234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          234 KMAVATLASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             TTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             CceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence            999999964332 3345788999998875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1e-26  Score=213.95  Aligned_cols=194  Identities=12%  Similarity=0.115  Sum_probs=149.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc--CC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGT--DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~--~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .+...|++|+|+|||++||+++  .+ .|+|||+.+++.+....  |.+.|..++++++++.+++++        ++.++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s--------~~~~~  200 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYIT--------GSSLE  200 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEEC--------SSCEE
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEecc--------ceeEE
Confidence            3445799999999999987543  44 48899999998877665  578899999999999888776        46688


Q ss_pred             EEeCCCCcEEEEEe---eCCceeEEEEeCCe--EEEEE-CC----EEEEEEcCCcEE----EEEEeccCCCCceEEEeeC
Q 020784          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDR--IIVVL-EQ----KIFVYNFADLKL----LHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       160 iWD~~~~~~~~~~~---~~~~v~~v~~~~~~--~~~~~-~~----~I~iwd~~~~~~----~~~l~~~~~~~~~~~~s~~  225 (321)
                      +|+..+++.+....   +...|.++.|+++.  ++++. ++    .+++|++.....    .+.+..|...+..++|  .
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--S  278 (365)
T 4h5i_A          201 VISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV--D  278 (365)
T ss_dssp             EEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE--C
T ss_pred             EEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE--C
Confidence            88888887665433   23468999999864  33333 33    688999865543    3345556555545555  4


Q ss_pred             CCceEEEeecCCCCcEEEEeeCCcc-eEE-eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       226 ~d~~~la~sGs~dg~V~i~d~~~~~-~~~-l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +|+.+|| +|+.||+|+|||..+.. +.+ +.+|...|++|+|||||++|||||.|++ |||||+..
T Consensus       279 pdg~~la-sgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-vrvw~ip~  343 (365)
T 4h5i_A          279 MKGELAV-LASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT-IHIIKLPL  343 (365)
T ss_dssp             TTSCEEE-EEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-EEEEECCT
T ss_pred             CCCCceE-EEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-EEEEEcCC
Confidence            5668998 59999999999998765 555 5799999999999999999999999999 99999964

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.2e-25  Score=204.87  Aligned_cols=227  Identities=14%  Similarity=0.098  Sum_probs=169.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|...|++++|+|||++||+|+.++ ++||+...........+. |.+.|..++++++++.+++++       .|++|+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s-------~D~~v~  130 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS-------RDKSVW  130 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-------CCCeEE
Confidence            56888999999999999999999755 889999876533233322 678899999999999999888       689999


Q ss_pred             EEeCCCCc---EEEEEee-CCceeEEEEeCCe--EEEEE-CCEEEEEEcCCcE--EEEEEeccCCCCceEEEeeCCCceE
Q 020784          160 IWDDHQSR---CIGELSF-RSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       160 iWD~~~~~---~~~~~~~-~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~--~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      +||++++.   ++..+.. ...|.++.|+++.  +++++ ++.|++||++.++  ...++.+|...+..++|+  +++.+
T Consensus       131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s--p~g~~  208 (345)
T 3fm0_A          131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD--PSGQR  208 (345)
T ss_dssp             EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--TTSSE
T ss_pred             EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC--CCCCE
Confidence            99998764   3344443 4579999998753  55555 5799999998765  446777777665555555  46688


Q ss_pred             EEeecCCCCcEEEEeeCCc----------------ceEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc-
Q 020784          231 LVCPGLQKGQVRVEHYASK----------------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-  292 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~----------------~~~~l~~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~-  292 (321)
                      |+ +|+.||+|+||+....                .+.++.+ |...|++++|+|++.+||+++.|++ ||||+...+. 
T Consensus       209 l~-s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~  286 (345)
T 3fm0_A          209 LA-SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSD  286 (345)
T ss_dssp             EE-EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSC
T ss_pred             EE-EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCC
Confidence            88 5999999999986321                1234444 8999999999999999999999999 9999998653 


Q ss_pred             -------EEEEEeCCCcceeE--EEeecC-ceEEEee
Q 020784          293 -------LLQEECCPSISAQS--GLWLSS-AWLRVLR  319 (321)
Q Consensus       293 -------~i~~~~~g~~~~~~--~~s~d~-~~la~~~  319 (321)
                             +......+|...+.  ++++++ .+||.+.
T Consensus       287 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             TTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred             cceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence                   22223356665554  555665 4787654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=7.9e-27  Score=210.40  Aligned_cols=224  Identities=12%  Similarity=0.073  Sum_probs=175.5

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEe-cCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           83 SPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~-~lasg~~~g-v~vw~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .|...|++++|+|+|+ +|++|+.++ |++||+ .+.+........|...+..+++++ ++.+++++       .|+.|+
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~-------~d~~i~  125 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAAS-------WDGLIE  125 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEE-------TTSEEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEc-------CCCeEE
Confidence            5777999999999999 999998755 889999 777552222100467899999998 88888877       679999


Q ss_pred             EEeCCC---------CcEEEEEeeCCceeEEEEeCCeEEEEEC-CEEEEEEcCC-cEEE--EEEeccCCCCceEEEeeCC
Q 020784          160 IWDDHQ---------SRCIGELSFRSEVRSVKLRRDRIIVVLE-QKIFVYNFAD-LKLL--HQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       160 iWD~~~---------~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~~I~iwd~~~-~~~~--~~l~~~~~~~~~~~~s~~~  226 (321)
                      +||+++         ++.+..+.+...|.+++|+++.++++.. +.|++||+++ ++..  .....+..  .+.++...+
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~i~~i~~~~  203 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY--QIRDVALLP  203 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS--CEEEEEECS
T ss_pred             EEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC--ceeEEEECC
Confidence            999987         6666666677789999999999777765 6999999987 4432  22223333  345555555


Q ss_pred             -CceEEEeecCCCCcEEEEeeCCc-------ceEEeecccc---------ceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          227 -GSLVLVCPGLQKGQVRVEHYASK-------RTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       227 -d~~~la~sGs~dg~V~i~d~~~~-------~~~~l~~H~~---------~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                       ++.++++ |+.||.|++|++...       ....+..|..         .|++++|+|+|++|++|+.||+ |+|||+.
T Consensus       204 ~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~  281 (342)
T 1yfq_A          204 KEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQ  281 (342)
T ss_dssp             GGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETT
T ss_pred             CCCCEEEE-EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCc
Confidence             5677774 889999999998754       3568888866         9999999999999999999999 9999999


Q ss_pred             CCcEEEEEeCCC-cceeEEEeecCceEEEee
Q 020784          290 DGTLLQEECCPS-ISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       290 tg~~i~~~~~g~-~~~~~~~s~d~~~la~~~  319 (321)
                      +++++.++. ++ ...+..+++++++|+++.
T Consensus       282 ~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s  311 (342)
T 1yfq_A          282 TRKKIKNFA-KFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             TTEEEEECC-CCSSSEEEEEEECSSEEEEEE
T ss_pred             cHhHhhhhh-cccCCCceEecCCCCeEEEEe
Confidence            999999885 44 655555559999998875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-26  Score=217.12  Aligned_cols=207  Identities=12%  Similarity=0.206  Sum_probs=159.2

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecC---Cc---eeEEeeeecCCceEEEEEecCCCeEEEEeCCCC
Q 020784           79 STSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDP---FR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        79 ~~~~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~---~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      .+...|.+.|++++|+| ||++||+|+.++ |+|||+.+   ..   ......  |.+.|..++++++++.+++++    
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s----  130 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQITMIPNFDAFAVSS----  130 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEEEECTTSSEEEEEE----
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc--CCCCEEEEEEeCCCCEEEEEe----
Confidence            33367889999999999 999999999866 88999876   32   222222  688999999999999998888    


Q ss_pred             CCCCCCcEEEEeCC---CCcEEEEEee-------------CCceeEEEE--eC--CeEEEEE-CCEEEEEEcCCcEEEEE
Q 020784          151 PQYPLNKVMIWDDH---QSRCIGELSF-------------RSEVRSVKL--RR--DRIIVVL-EQKIFVYNFADLKLLHQ  209 (321)
Q Consensus       151 ~~~~d~~v~iWD~~---~~~~~~~~~~-------------~~~v~~v~~--~~--~~~~~~~-~~~I~iwd~~~~~~~~~  209 (321)
                         .|++|++||++   +++....+..             ...+.++.+  ++  ..+++++ ++.|++||+++++.+.+
T Consensus       131 ---~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          131 ---KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             ---TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ---CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence               68999999994   5555443332             223445443  23  3455554 47999999999999999


Q ss_pred             Eec--cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEee-ccccceeEEEEC----CCCCEEEEEeCCCc
Q 020784          210 IET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM-AHDSRIACFALT----QDGQLLATSSTKGT  281 (321)
Q Consensus       210 l~~--~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~-~H~~~V~~vafs----pdg~~las~S~Dgt  281 (321)
                      +..  |...+..+++  ++++.+|+ +|+.||.|++||+..+. +.++. .|...|++++|+    +++.+||+|+.||+
T Consensus       208 ~~~~~h~~~v~~~~~--s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          208 IENSPRHGAVSSICI--DEECCVLI-LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             EECCGGGCCEEEEEE--CTTSCEEE-EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             EccCCCCCceEEEEE--CCCCCEEE-EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence            988  5555444444  55668888 59999999999998765 45665 788899999555    56889999999999


Q ss_pred             EEEEEEcCCCcEEEEEe
Q 020784          282 LVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       282 ~IrIWd~~tg~~i~~~~  298 (321)
                       |+|||+++++++.++.
T Consensus       285 -i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          285 -LTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             -EEEEETTTTEEEEEEE
T ss_pred             -EEEEEcCCCcEEEEEE
Confidence             9999999999999886

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=2e-27  Score=223.29  Aligned_cols=225  Identities=12%  Similarity=0.056  Sum_probs=165.6

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeee-ecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~-~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .|...|+|++|+| ++++||+|+.+| |+|||+.+.+......+ .|.+.|..++|++ +++.+++++       .|++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-------~D~~v  189 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-------MEGTT  189 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-------SSSCE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-------CCCEE
Confidence            4667899999999 567999999866 88999987765444333 2678899999986 577887776       68999


Q ss_pred             EEEeCCCCcEEEEEeeCC---ceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          159 MIWDDHQSRCIGELSFRS---EVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~---~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      +|||++++........+.   .+.+++|+++.  ++++. ++.|++||++. +.+.++..|...+..++++++++ .+++
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~-~~~~  267 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD-WFLA  267 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-SEEE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-eEEE
Confidence            999998765543333322   46788998764  44443 46999999974 45667777777766666665432 3555


Q ss_pred             eecCCCCcEEEEeeCCcc----eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc------
Q 020784          233 CPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI------  302 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~----~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~------  302 (321)
                       +|+.||.|+|||+....    +....+|...|++|+|+|+|.+|+||+.||+ |+|||+.++++...+.....      
T Consensus       268 -s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~  345 (435)
T 4e54_B          268 -TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHL  345 (435)
T ss_dssp             -EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred             -EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccc
Confidence             58999999999987533    2345689999999999999999999999999 99999999998877632111      


Q ss_pred             -ceeEEEeecCceEEEe
Q 020784          303 -SAQSGLWLSSAWLRVL  318 (321)
Q Consensus       303 -~~~~~~s~d~~~la~~  318 (321)
                       .....+.+++.+++++
T Consensus       346 ~~~~~~~~~~~~~~~~~  362 (435)
T 4e54_B          346 TPIKAAWHPRYNLIVVG  362 (435)
T ss_dssp             CCCBCEECSSSSCEEEE
T ss_pred             eeEEEEEcCCCCEEEEE
Confidence             1122455566666654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=5.7e-27  Score=216.49  Aligned_cols=226  Identities=12%  Similarity=0.114  Sum_probs=173.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCce-------eEEeeeecCCceEEEEEecCCC-eEEEEeCCCCCC
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-------IFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQ  152 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~-------~~~~~~~~~~~v~~v~~~~~~~-~~~~~sg~~~~~  152 (321)
                      ..|...|.+++|+|+|++||+|+.++ ++||++.+...       ...... |.+.+..+.+.++.. .+++++      
T Consensus       105 ~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g-h~~~v~~~~~~~~~~~~l~s~s------  177 (380)
T 3iz6_a          105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG-HKGYASSCQYVPDQETRLITGS------  177 (380)
T ss_dssp             ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC-CSSCCCCCBCCSSSSSCEEEEC------
T ss_pred             ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC-CCcceEEEEEecCCCCEEEEEC------
Confidence            45777899999999999999999855 88999864321       111111 566777777777544 466655      


Q ss_pred             CCCCcEEEEeCCCCcEEEEEe------eCCceeEEEEeC---CeEEEEE-CCEEEEEEcC-CcEEEEEEeccCCCCceEE
Q 020784          153 YPLNKVMIWDDHQSRCIGELS------FRSEVRSVKLRR---DRIIVVL-EQKIFVYNFA-DLKLLHQIETIANPKGLCA  221 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~------~~~~v~~v~~~~---~~~~~~~-~~~I~iwd~~-~~~~~~~l~~~~~~~~~~~  221 (321)
                       .|++|++||+.+++.+..+.      +...|.++.+++   +.++.++ +++|++||++ ..+.++.+.+|...+..++
T Consensus       178 -~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~  256 (380)
T 3iz6_a          178 -GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK  256 (380)
T ss_dssp             -TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred             -CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE
Confidence             57999999999999887763      234789999865   3455555 5799999997 5577888888888877777


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccc-------cceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD-------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~-------~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      +++  ++.+|+ +|+.||+|++||+.++. +..+..|.       ..|++++|+|+|++|++|+.||+ |+|||+.++++
T Consensus       257 ~~p--~~~~l~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~  332 (380)
T 3iz6_a          257 FFP--DGQRFG-TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEM  332 (380)
T ss_dssp             ECT--TSSEEE-EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCE
T ss_pred             Eec--CCCeEE-EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCce
Confidence            766  457787 59999999999998765 44555443       34899999999999999999999 99999999999


Q ss_pred             EEEEe---CCCcce--eEEEeecCceEEEee
Q 020784          294 LQEEC---CPSISA--QSGLWLSSAWLRVLR  319 (321)
Q Consensus       294 i~~~~---~g~~~~--~~~~s~d~~~la~~~  319 (321)
                      +.++.   .+|...  .+.+++||++|+.+.
T Consensus       333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             EEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             EEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence            88874   345543  457789999998864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=4.3e-26  Score=226.43  Aligned_cols=225  Identities=12%  Similarity=0.124  Sum_probs=177.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|++||++|++|+.++ |+|||+.+++....... |.+.|..++++++++.+++++       .|++|+|
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s-------~D~~i~i  498 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSAS-------RDRTIKL  498 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEE-------TTSCEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEe-------CCCEEEE
Confidence            56888999999999999999999865 88999998877655554 788999999999999998888       6899999


Q ss_pred             EeCCCCcEEEEEe----eCCceeEEEEeCCe----EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEE
Q 020784          161 WDDHQSRCIGELS----FRSEVRSVKLRRDR----IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       161 WD~~~~~~~~~~~----~~~~v~~v~~~~~~----~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      ||...........    +...|.+++|+++.    ++.++ ++.|++||+++++++.++..|...+..+++++  ++.+|
T Consensus       499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp--dg~~l  576 (694)
T 3dm0_A          499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP--DGSLC  576 (694)
T ss_dssp             ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEE
T ss_pred             EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC--CCCEE
Confidence            9987554333221    33469999998753    45554 57999999999999999998877766666655  55788


Q ss_pred             EeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc---------
Q 020784          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI---------  302 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~---------  302 (321)
                      + +|+.||.|++||+.++.......+...|++++|+|++.+|++++ |+. |+|||+++++++.++.....         
T Consensus       577 ~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          577 A-SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             E-EEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEECCCCC---------
T ss_pred             E-EEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhcccccccccccccc
Confidence            8 59999999999998766443334567899999999999888776 777 99999999999988753211         


Q ss_pred             -----------ceeEEEeecCceEEEee
Q 020784          303 -----------SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       303 -----------~~~~~~s~d~~~la~~~  319 (321)
                                 ...+.+++||++|+.+.
T Consensus       654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs  681 (694)
T 3dm0_A          654 GPAATKRKVIYCTSLNWSADGSTLFSGY  681 (694)
T ss_dssp             -------CCCCEEEEEECTTSSEEEEEE
T ss_pred             ccccCCceeEEeeeEEEcCCCCEEEEEc
Confidence                       12346789999998864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=9.7e-26  Score=202.14  Aligned_cols=225  Identities=14%  Similarity=0.149  Sum_probs=176.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCce---eEEeee-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE---IFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~---~~~~~~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|...|++++|+|+|++|++|+++.++||++.+.+.   ...... .|...+..++++++++.+++++       .|+.
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~  120 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-------EAST  120 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-------SSSE
T ss_pred             ccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-------CCCc
Confidence            4688899999999999999999966689999976542   112111 2578899999999999888887       6799


Q ss_pred             EEEEeCCCCc--EEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEE
Q 020784          158 VMIWDDHQSR--CIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       158 v~iWD~~~~~--~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      |++||+++++  ....+..+ ..|.+++|+++  .++++. ++.|++||+++++.+..+..|...+..+++++  ++.++
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l  198 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKL  198 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEE
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEE
Confidence            9999999887  44444433 47999999875  455554 47999999999999999988766655555554  55777


Q ss_pred             EeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEe
Q 020784          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLW  309 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s  309 (321)
                      + +|+.||.|++||+..........|...|.+++|+|+|++|++++.|+. |++||+++++... + .++..  ..+.++
T Consensus       199 ~-~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~~-~-~~~~~~v~~~~~~  274 (337)
T 1gxr_A          199 W-TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQ-L-HLHESCVLSLKFA  274 (337)
T ss_dssp             E-EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEE-E-CCCSSCEEEEEEC
T ss_pred             E-EEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeEE-E-cCCccceeEEEEC
Confidence            7 488999999999987765555568899999999999999999999999 9999999998754 3 23433  345778


Q ss_pred             ecCceEEEee
Q 020784          310 LSSAWLRVLR  319 (321)
Q Consensus       310 ~d~~~la~~~  319 (321)
                      +++++|+++.
T Consensus       275 ~~~~~l~~~~  284 (337)
T 1gxr_A          275 YCGKWFVSTG  284 (337)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEec
Confidence            8899998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.4e-26  Score=210.66  Aligned_cols=222  Identities=15%  Similarity=0.215  Sum_probs=180.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      |.+.|++++|+|+|++|++|+.++ |+||| .+++....... |...+..++++++++.+++++       .|+.|++||
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd  177 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGTHIISMD-------VENVTILWN  177 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSSEEEEEE-------TTCCEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCCEEEEEe-------cCCeEEEEE
Confidence            567999999999999999998865 88999 45555444443 678899999999999998887       679999999


Q ss_pred             CCCCcEEEEEeeCCc----------------eeEEEEeCCeEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEee
Q 020784          163 DHQSRCIGELSFRSE----------------VRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~----------------v~~v~~~~~~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~  224 (321)
                      +.+++.+..+..+..                +.++.|+++..+++.  ++.|++||+.+++.+..+..|...+..+++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND  257 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence            999998887766542                888888876555443  46999999999988888888777666666665


Q ss_pred             CCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC-c
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS-I  302 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~-~  302 (321)
                      +  +.+++ +|+.||.|++||+.... ...+.+|...|.+++|+|++ +|++++.||. |+|||+++++++..+.... .
T Consensus       258 ~--~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~  332 (425)
T 1r5m_A          258 T--NKLLL-SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIVDGVP  332 (425)
T ss_dssp             T--TTEEE-EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEECTTCC
T ss_pred             C--CCEEE-EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEecccCCcc
Confidence            4  46777 48899999999988755 66888999999999999999 9999999999 9999999999999886422 2


Q ss_pred             ceeEEEeecCceEEEee
Q 020784          303 SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       303 ~~~~~~s~d~~~la~~~  319 (321)
                      ...+.+++++++|+++.
T Consensus       333 i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEE
Confidence            33457788899998864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=216.02  Aligned_cols=222  Identities=11%  Similarity=0.127  Sum_probs=164.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCce-----------eEEeeeecC------------CceEEEEEecCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-----------IFRRDFERG------------GGIGVVEMLFRC  139 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~-----------~~~~~~~~~------------~~v~~v~~~~~~  139 (321)
                      +.+.|++++|+|||++||+|+.++ |+||++.+.+.           ...... |.            +.|..++|++++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCC
Confidence            456899999999999999999866 88999987652           223332 55            669999999987


Q ss_pred             --CeEEEEeCCCCCCCCCCcEEEEeCCCCcEEE---------------------------------------EE--eeCC
Q 020784          140 --NILALVGGGPDPQYPLNKVMIWDDHQSRCIG---------------------------------------EL--SFRS  176 (321)
Q Consensus       140 --~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~---------------------------------------~~--~~~~  176 (321)
                        ..+++++       .|++|++||+.+++...                                       .+  .+..
T Consensus       106 ~~~~l~s~s-------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B          106 NAAQFLLST-------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             SSSEEEEEE-------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             CcceEEEeC-------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence              6777776       67999999987654321                                       11  2445


Q ss_pred             ceeEEEEeCC--eEEEEECCEEEEEEcC-CcEEEEEE-------eccCCCCceEEEeeCCCc-eEEEeecCCCCcEEEEe
Q 020784          177 EVRSVKLRRD--RIIVVLEQKIFVYNFA-DLKLLHQI-------ETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEH  245 (321)
Q Consensus       177 ~v~~v~~~~~--~~~~~~~~~I~iwd~~-~~~~~~~l-------~~~~~~~~~~~~s~~~d~-~~la~sGs~dg~V~i~d  245 (321)
                      .|.+++|+++  .++++.++.|++||++ ..+.+..+       ..|...+..+++  ++++ .+++ +|+.||.|++||
T Consensus       179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~-s~~~dg~i~iwd  255 (447)
T 3dw8_B          179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF--HPNSCNTFV-YSSSKGTIRLCD  255 (447)
T ss_dssp             CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE--CSSCTTEEE-EEETTSCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE--CCCCCcEEE-EEeCCCeEEEEE
Confidence            7999999875  4555656799999998 44555433       344444444444  5555 6676 599999999999


Q ss_pred             eCCcc-----eEEeecccc------------ceeEEEECCCCCEEEEEeCCCcEEEEEEcCC-CcEEEEEeCCCcc----
Q 020784          246 YASKR-----TKFIMAHDS------------RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEECCPSIS----  303 (321)
Q Consensus       246 ~~~~~-----~~~l~~H~~------------~V~~vafspdg~~las~S~Dgt~IrIWd~~t-g~~i~~~~~g~~~----  303 (321)
                      +....     ...+.+|..            .|++++|+|+|++|++++. ++ |+|||+++ ++++.++.. +..    
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~-~~~~~~~  332 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQV-HEYLRSK  332 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEES-CGGGTTT
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeec-ccccccc
Confidence            88765     478888886            9999999999999999998 88 99999997 888888853 432    


Q ss_pred             -------------eeEEEeecCceEEEee
Q 020784          304 -------------AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       304 -------------~~~~~s~d~~~la~~~  319 (321)
                                   ..+++++++++|+++.
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s  361 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDSVVMTGS  361 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred             ccccccccccccceEEEECCCCCEEEEec
Confidence                         1268899999998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=1.4e-25  Score=216.72  Aligned_cols=221  Identities=17%  Similarity=0.215  Sum_probs=179.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|||++|++++.++ +++||....... .... |...+..+++++++..+++++       .|++|++
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~-~~~~-~~~~v~~~~~s~~g~~l~~~~-------~dg~v~~  370 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTG-HSSSVWGVAFSPDGQTIASAS-------DDKTVKL  370 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-EECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-EEeC-CCCCEEEEEECCCCCEEEEEe-------CCCEEEE
Confidence            46778999999999999999998865 889998765433 2222 577899999999999998887       6799999


Q ss_pred             EeCCCCcEEEEEee-CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ||. +++.+..+.. ...|.+++|+++  .++++. ++.|++||. +++.++++..|...+..++++  +|+.+|+ +++
T Consensus       371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s--~d~~~l~-~~~  445 (577)
T 2ymu_A          371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS--PDDQTIA-SAS  445 (577)
T ss_dssp             EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC--TTSSEEE-EEE
T ss_pred             EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC--CCCCEEE-EEc
Confidence            995 5566666654 458999999876  355554 469999995 567788888887765555555  4567888 489


Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEeecCce
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWLSSAW  314 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~d~~~  314 (321)
                      .||.|++|+...+.+..+.+|...|++++|+|+|++||+++.|++ |+||| .+|++++++. +|...  .++|++||++
T Consensus       446 ~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~-~~~~~~~~~~-~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEE-TTSCEEEEEE-CCSSCEEEEEECTTSSC
T ss_pred             CCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEc-CCCCEEEEEe-CCCCCEEEEEEcCCCCE
Confidence            999999999877778899999999999999999999999999999 99999 5789999885 55543  4578899999


Q ss_pred             EEEee
Q 020784          315 LRVLR  319 (321)
Q Consensus       315 la~~~  319 (321)
                      ||++.
T Consensus       523 l~s~~  527 (577)
T 2ymu_A          523 IASAS  527 (577)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=5.1e-26  Score=203.07  Aligned_cols=198  Identities=11%  Similarity=0.071  Sum_probs=153.4

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEecCCc--eeEEeeeecCCceEEEEEecC--CCeEEEEeCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYP  154 (321)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasg~~~g-v~vw~~~~~~--~~~~~~~~~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~  154 (321)
                      ..|.+.|++++|++  +|++||+|+.|+ |+|||+.+++  ....... |...|..++++++  +..+++++       .
T Consensus        50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~~l~s~s-------~  121 (297)
T 2pm7_B           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLLVAS-------S  121 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEE-------T
T ss_pred             ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec-CCCceeEEEeCcCCCCcEEEEEE-------C
Confidence            56888999999986  489999998755 8899998764  2223332 6788999999887  67788777       6


Q ss_pred             CCcEEEEeCCCCcE--EEEEe-eCCceeEEEEeCC---------------eEEEEE-CCEEEEEEcCCcE----EEEEEe
Q 020784          155 LNKVMIWDDHQSRC--IGELS-FRSEVRSVKLRRD---------------RIIVVL-EQKIFVYNFADLK----LLHQIE  211 (321)
Q Consensus       155 d~~v~iWD~~~~~~--~~~~~-~~~~v~~v~~~~~---------------~~~~~~-~~~I~iwd~~~~~----~~~~l~  211 (321)
                      |++|++||++++..  ...+. +...|.++.|+++               .+++++ +++|++||+++++    ++.++.
T Consensus       122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~  201 (297)
T 2pm7_B          122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  201 (297)
T ss_dssp             TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence            89999999987631  22333 4457999999875               455555 5699999997654    667888


Q ss_pred             ccCCCCceEEEeeCC-CceEEEeecCCCCcEEEEeeCCcc----eEEe--eccccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          212 TIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKR----TKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       212 ~~~~~~~~~~~s~~~-d~~~la~sGs~dg~V~i~d~~~~~----~~~l--~~H~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                      +|...+..+++++++ .+.+|| +|+.||+|+||+.....    ...+  ..|...|.+++|+|+|++||+++.||+ |+
T Consensus       202 ~H~~~V~~v~~sp~~~~~~~la-s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~-v~  279 (297)
T 2pm7_B          202 GHSDWVRDVAWSPTVLLRSYMA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VT  279 (297)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC-EE
T ss_pred             CCCCceEEEEECCCCCCceEEE-EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc-EE
Confidence            888777777777653 236777 69999999999987632    2234  578899999999999999999999999 99


Q ss_pred             EEEcC
Q 020784          285 IFNTL  289 (321)
Q Consensus       285 IWd~~  289 (321)
                      ||+..
T Consensus       280 lw~~~  284 (297)
T 2pm7_B          280 LWKEN  284 (297)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=9.9e-26  Score=207.30  Aligned_cols=204  Identities=11%  Similarity=0.090  Sum_probs=162.4

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCceeEEeee-ecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~~~~~~~-~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|...|++++|+|+| ++|++|+.++ |+|||+.+.+....... .|.+.|..+++++ +++.+++++       .|++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~d~~  142 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS-------IRGA  142 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE-------TTTE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe-------CCCE
Confidence            5678899999999999 9999998865 88999998776655542 2678899999998 667777777       6799


Q ss_pred             EEEEeCCCCcEEEEEee-C---CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCce-
Q 020784          158 VMIWDDHQSRCIGELSF-R---SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL-  229 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~-~---~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~-  229 (321)
                      |++||++.. .+..+.. .   ..|.+++|+++  .++++. ++.|++||+ +++.+..+..|...+..++++++  +. 
T Consensus       143 i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~--~~~  218 (383)
T 3ei3_B          143 TTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR--CDW  218 (383)
T ss_dssp             EEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS--CTT
T ss_pred             EEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC--CCC
Confidence            999999864 4444432 2   46999999875  455554 479999999 56788888888776666666554  45 


Q ss_pred             EEEeecCCCCcEEEEeeCC----cceEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          230 VLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~----~~~~~l~~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      +++ +|+.||.|++||+..    .......+|...|++++|+| +|.+|++++.|++ |+|||+++++++.++.
T Consensus       219 ~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          219 LMA-TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQII  290 (383)
T ss_dssp             EEE-EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEE
T ss_pred             EEE-EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCccccccc
Confidence            666 589999999999986    44444448999999999999 9999999999999 9999999998776664

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=4.2e-25  Score=208.19  Aligned_cols=223  Identities=11%  Similarity=0.162  Sum_probs=181.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEec--CCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..|.+.|++++|++++ +|++|+.+ .|+|||+.+++....... |.+.+.++++.+  +++.+++++       .|++|
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s-------~d~~i  229 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGS-------RDNTL  229 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEEEEE-------TTSCE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEEEEc-------CCCcE
Confidence            4688999999999999 77777775 488999999887665554 688999999885  445666666       67999


Q ss_pred             EEEeCCCCcE-----------------------EEEEe-eCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEecc
Q 020784          159 MIWDDHQSRC-----------------------IGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETI  213 (321)
Q Consensus       159 ~iWD~~~~~~-----------------------~~~~~-~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~  213 (321)
                      ++||+.++..                       +..+. +...|.++..+.+.++++. ++.|++||+++++.+..+..|
T Consensus       230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  309 (464)
T 3v7d_B          230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  309 (464)
T ss_dssp             EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            9999987653                       22232 2346788888888888876 569999999999999999888


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      ...+..+++++  ++..++ +|+.||.|++||+.++. +.++.+|...|++++|+  +.+|++|+.||+ |+|||+.+++
T Consensus       310 ~~~v~~~~~~~--~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~~  383 (464)
T 3v7d_B          310 TDRIYSTIYDH--ERKRCI-SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYS  383 (464)
T ss_dssp             SSCEEEEEEET--TTTEEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCC
T ss_pred             CCCEEEEEEcC--CCCEEE-EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCCc
Confidence            77666666655  557777 59999999999997655 66899999999999997  589999999999 9999999999


Q ss_pred             EEEEEeCCCcceeEEEeecCceEEEee
Q 020784          293 LLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       293 ~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ....+..........+++++++|+++.
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          384 RKFSYHHTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred             eeeeecCCCCccEEEEEeCCCEEEEec
Confidence            888887666667779999999998753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=2.2e-25  Score=205.09  Aligned_cols=201  Identities=13%  Similarity=0.157  Sum_probs=162.0

Q ss_pred             cCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeee------------ecCCceEEEEEec-CCCeEEEE
Q 020784           81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDF------------ERGGGIGVVEMLF-RCNILALV  145 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~------------~~~~~v~~v~~~~-~~~~~~~~  145 (321)
                      ...|.+.|++++|+| +|++|++|+.++ |+|||+.+.+.......            .|.+.|..+++++ +++.++++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            356888999999999 999999998766 88999987654322220            1578899999988 66778777


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC-----eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCce
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-----RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                      +       .|+.|++||+.+++.+..+.+...+.++.+.+.     .++++. ++.|++||+++++.+..+..|...+..
T Consensus       119 ~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          119 S-------FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             E-------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             e-------CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            7       679999999999999999988889999998763     455554 469999999999999999888776666


Q ss_pred             EEEeeCCCce-EEEeecCCCCcEEEEeeCCcc--eEEe---------------eccccceeEEEECCCCCEEEEEeCCCc
Q 020784          220 CAVSQGVGSL-VLVCPGLQKGQVRVEHYASKR--TKFI---------------MAHDSRIACFALTQDGQLLATSSTKGT  281 (321)
Q Consensus       220 ~~~s~~~d~~-~la~sGs~dg~V~i~d~~~~~--~~~l---------------~~H~~~V~~vafspdg~~las~S~Dgt  281 (321)
                      ++++++  +. +++ +|+.||.|++||+....  +..+               .+|...|++++|+|+|++|++++.||.
T Consensus       192 ~~~~~~--~~~ll~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          192 VSWSPR--YDYILA-TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEECSS--CTTEEE-EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEECCC--CCcEEE-EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            666654  44 455 58999999999986542  3333               679999999999999999999999999


Q ss_pred             EEEEEEcCCCc
Q 020784          282 LVRIFNTLDGT  292 (321)
Q Consensus       282 ~IrIWd~~tg~  292 (321)
                       |+|||+.+++
T Consensus       269 -i~vwd~~~~~  278 (408)
T 4a11_B          269 -MRLWNSSNGE  278 (408)
T ss_dssp             -EEEEETTTCC
T ss_pred             -EEEEECCCCc
Confidence             9999987653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=7.3e-26  Score=208.40  Aligned_cols=205  Identities=15%  Similarity=0.153  Sum_probs=163.8

Q ss_pred             CCCCCCeEEEEEcCC----C---CEEEEEcCCc-EEEEEecCCce-----eEEeeeec-----CCceEEEEEe----cCC
Q 020784           82 SSPPPTLLHISFNQD----H---GCFAAGTDHG-FRIYNCDPFRE-----IFRRDFER-----GGGIGVVEML----FRC  139 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d----g---~~lasg~~~g-v~vw~~~~~~~-----~~~~~~~~-----~~~v~~v~~~----~~~  139 (321)
                      ..|...|++++|+++    |   ++|++|+.++ |++|++.+.+.     ...... |     .+.+..++++    +++
T Consensus        59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~  137 (397)
T 1sq9_A           59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL-LDSDMKKHSFWALKWGASNDRLL  137 (397)
T ss_dssp             ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC-SCTTGGGSCEEEEEEECCC----
T ss_pred             ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecc-cccccCCCcEEEEEEeeccCCCC
Confidence            467789999999999    9   9999988755 88999987764     444443 4     4789999999    888


Q ss_pred             Ce-EEEEeCCCCCCCCCCcEEEEeCCC------CcEEE-----EEee--------CCceeEEEEeCCe-EEEEE-CCEEE
Q 020784          140 NI-LALVGGGPDPQYPLNKVMIWDDHQ------SRCIG-----ELSF--------RSEVRSVKLRRDR-IIVVL-EQKIF  197 (321)
Q Consensus       140 ~~-~~~~sg~~~~~~~d~~v~iWD~~~------~~~~~-----~~~~--------~~~v~~v~~~~~~-~~~~~-~~~I~  197 (321)
                      +. +++++       .|+.|++||+.+      ++.+.     .+..        ...|.+++|+++. ++++. ++.|+
T Consensus       138 ~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~  210 (397)
T 1sq9_A          138 SHRLVATD-------VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQ  210 (397)
T ss_dssp             CEEEEEEE-------TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEE
T ss_pred             ceEEEEEe-------CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEE
Confidence            88 87777       679999999988      65544     5542        4579999999875 33333 46999


Q ss_pred             EEEcCCcEEEEEEec---c---CCCCceEEEeeCCCceEEEeecCCC---CcEEEEeeCCcc-eEEeec-----------
Q 020784          198 VYNFADLKLLHQIET---I---ANPKGLCAVSQGVGSLVLVCPGLQK---GQVRVEHYASKR-TKFIMA-----------  256 (321)
Q Consensus       198 iwd~~~~~~~~~l~~---~---~~~~~~~~~s~~~d~~~la~sGs~d---g~V~i~d~~~~~-~~~l~~-----------  256 (321)
                      +||+++++.+..+..   |   ...+..+++++  ++.+|++ |+.|   |.|++||+.... +..+.+           
T Consensus       211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~--~~~~l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 1sq9_A          211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSP--QGSLLAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  287 (397)
T ss_dssp             EEETTTTEEEEEEECCC---CCCCCEEEEEECS--STTEEEE-EEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             EEECCCCceeEEEeccccccccCCccceEEECC--CCCEEEE-EecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence            999999999999988   6   55555555554  5577774 8888   999999987655 668888           


Q ss_pred             --cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          257 --HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       257 --H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                        |...|++++|+|+|++||+++.||+ |+|||+++++++.++.
T Consensus       288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          288 FAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLN  330 (397)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEe
Confidence              9999999999999999999999999 9999999999999997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=4.8e-25  Score=196.48  Aligned_cols=222  Identities=14%  Similarity=0.108  Sum_probs=166.6

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      +++|+||+++ +||+|.++.|+|||+++++.+....+. |...|.+++++++++.+++++       .|++|++||++++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs-------~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE-------CCCcEEEeecCCc
Confidence            4679999987 899999999999999999876655542 556799999999999998888       7899999999999


Q ss_pred             cEEEEEeeCC-ceeEE-----------------------------------------EEeCC--eEEEEE-CCEEEEEEc
Q 020784          167 RCIGELSFRS-EVRSV-----------------------------------------KLRRD--RIIVVL-EQKIFVYNF  201 (321)
Q Consensus       167 ~~~~~~~~~~-~v~~v-----------------------------------------~~~~~--~~~~~~-~~~I~iwd~  201 (321)
                      +.+..+..+. .+.++                                         .+.++  .++.+. ++.|++||+
T Consensus       100 ~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            8877655432 22222                                         22221  233443 468999998


Q ss_pred             CCcEE----EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEe
Q 020784          202 ADLKL----LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       202 ~~~~~----~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S  277 (321)
                      ++++.    ......+...+..+.+++.....+...+|+.++.|++|+...........|...|..++|++++..+++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEE
Confidence            76542    22333344444555666555444444578999999999998887777778889999999999999887765


Q ss_pred             --CCCcEEEEEEcCCCcEEEEEeCCCcceeE--EEeecCceEEEee
Q 020784          278 --TKGTLVRIFNTLDGTLLQEECCPSISAQS--GLWLSSAWLRVLR  319 (321)
Q Consensus       278 --~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~~s~d~~~la~~~  319 (321)
                        .|++ |+|||+++++++++++ +|...+.  ++++||++|+.+.
T Consensus       260 g~~d~~-i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s  303 (318)
T 4ggc_A          260 GFAQNQ-LVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAA  303 (318)
T ss_dssp             CTTTCC-EEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             EcCCCE-EEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence              7999 9999999999999994 6765544  6778899998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=5.6e-25  Score=204.20  Aligned_cols=226  Identities=12%  Similarity=0.114  Sum_probs=176.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|+|++|++|+.++ |+|||+.+.+....... |.+.+..+.+  +++.+++++       .|+.|++
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~-------~dg~i~i  200 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSW--NRHVLSSGS-------RSGAIHH  200 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEE--ETTEEEEEE-------TTSEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEE--CCCEEEEEc-------CCCCEEE
Confidence            34778999999999999999998765 88999998887666554 6777887776  567787777       6799999


Q ss_pred             EeCC-CCcEEEEEee-CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe-e
Q 020784          161 WDDH-QSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC-P  234 (321)
Q Consensus       161 WD~~-~~~~~~~~~~-~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~-s  234 (321)
                      ||++ .+..+..+.. ...|.+++|+++  .+++++ ++.|++||+++++.+..+..|...+..+++++++.. ++++ +
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-ll~~~~  279 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN-LLATGG  279 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT-EEEEEC
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC-EEEEec
Confidence            9998 4555666654 458999999875  455555 479999999999999999888888888888876543 4442 2


Q ss_pred             cCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCcEEEEEe-CCCcc--eeEEEe
Q 020784          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEEC-CPSIS--AQSGLW  309 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S--~Dgt~IrIWd~~tg~~i~~~~-~g~~~--~~~~~s  309 (321)
                      |+.||.|++||+.++.......|...|++++|+|+|++|++++  .||. |+|||+.+++...... .+|..  ..+.++
T Consensus       280 gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s  358 (401)
T 4aez_A          280 GTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALS  358 (401)
T ss_dssp             CTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence            4489999999998766443335778999999999999999954  8999 9999999987765542 34443  345778


Q ss_pred             ecCceEEEee
Q 020784          310 LSSAWLRVLR  319 (321)
Q Consensus       310 ~d~~~la~~~  319 (321)
                      +++++|+++.
T Consensus       359 ~dg~~l~s~~  368 (401)
T 4aez_A          359 PDGRILSTAA  368 (401)
T ss_dssp             TTSSEEEEEC
T ss_pred             CCCCEEEEEe
Confidence            8999998864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.4e-26  Score=207.45  Aligned_cols=222  Identities=13%  Similarity=0.106  Sum_probs=175.7

Q ss_pred             CCCCeEEEEEcCC----CCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCc
Q 020784           84 PPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        84 ~~~~V~~v~fs~d----g~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~  157 (321)
                      |...|++++|+++    |++|++|+.++ |+|||+.+.+....... |.+.|..+++++ +++.+++++       .|+.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~-------~dg~  139 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVS-------KDHA  139 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEE-------TTSC
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEe-------CCCe
Confidence            6678999999999    67999998866 88999998887665553 688999999998 788888877       6799


Q ss_pred             EEEEeCCCCcEEEEE----eeCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEec------------------
Q 020784          158 VMIWDDHQSRCIGEL----SFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIET------------------  212 (321)
Q Consensus       158 v~iWD~~~~~~~~~~----~~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~------------------  212 (321)
                      |++||+++++.+..+    .+...|.+++|+++  .++++. ++.|++||+++++.+..+..                  
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999988887    35568999999875  455554 57999999987765443332                  


Q ss_pred             ----------cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc---------------ceEEeeccccceeEEEEC
Q 020784          213 ----------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---------------RTKFIMAHDSRIACFALT  267 (321)
Q Consensus       213 ----------~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~---------------~~~~l~~H~~~V~~vafs  267 (321)
                                |...+..++++  +  .+++ +|+.||.|++||....               .+..+.+|...|++++|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~--~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--G--DLIL-SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--T--TEEE-EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred             ccCccccccCCcceEEEEEEc--C--CEEE-EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence                      66666666666  2  4666 4899999999998753               245788999999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEEEcCCCc----EEEEEeCC---CcceeEEEeecCceEEEee
Q 020784          268 QD--GQLLATSSTKGTLVRIFNTLDGT----LLQEECCP---SISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       268 pd--g~~las~S~Dgt~IrIWd~~tg~----~i~~~~~g---~~~~~~~~s~d~~~la~~~  319 (321)
                      |+  |++||+|+.||. |+|||+.+++    .+.++...   .....+.+++++++|+++.
T Consensus       295 ~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  354 (366)
T 3k26_A          295 MDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC  354 (366)
T ss_dssp             ECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence            99  999999999999 9999999986    44466432   2233457788999998864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=1.1e-25  Score=207.21  Aligned_cols=224  Identities=13%  Similarity=0.206  Sum_probs=175.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc------eeEEeeeecCCceEEEEEecC----C---CeEEEEe
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR------EIFRRDFERGGGIGVVEMLFR----C---NILALVG  146 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~------~~~~~~~~~~~~v~~v~~~~~----~---~~~~~~s  146 (321)
                      ...|.+.|++++|+|  ++|++|+.++ |+||++++.+      ....... |...|..++++++    +   +.+++++
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEc
Confidence            357889999999999  7888888765 8899998877      4444443 6888999999988    7   8888877


Q ss_pred             CCCCCCCCCCcEEEEeCCCCcE-----EEEEeeC------CceeEEEEe----CC--e-EEEEE-CCEEEEEEcCC----
Q 020784          147 GGPDPQYPLNKVMIWDDHQSRC-----IGELSFR------SEVRSVKLR----RD--R-IIVVL-EQKIFVYNFAD----  203 (321)
Q Consensus       147 g~~~~~~~d~~v~iWD~~~~~~-----~~~~~~~------~~v~~v~~~----~~--~-~~~~~-~~~I~iwd~~~----  203 (321)
                             .|+.|++||+.+++.     +..+..+      ..|.+++|+    ++  . ++++. ++.|++||+.+    
T Consensus        89 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           89 -------FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             -------TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             -------CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence                   679999999988875     6666655      789999999    54  4 55554 47999999988    


Q ss_pred             --cEEEE-----EEec-------cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeec---c---cccee
Q 020784          204 --LKLLH-----QIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA---H---DSRIA  262 (321)
Q Consensus       204 --~~~~~-----~l~~-------~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~---H---~~~V~  262 (321)
                        ++.+.     ++..       +...+..++++  +++ +++ +|+.||.|++||+.... +..+..   |   ...|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEE-EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEE-EEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence              66666     6643       44445555554  456 666 58999999999998655 567888   9   99999


Q ss_pred             EEEECCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEeCC------------Ccce--eEEEeecCceEEEee
Q 020784          263 CFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEECCP------------SISA--QSGLWLSSAWLRVLR  319 (321)
Q Consensus       263 ~vafspdg~~las~S~D---gt~IrIWd~~tg~~i~~~~~g------------~~~~--~~~~s~d~~~la~~~  319 (321)
                      +++|+|++.+|++++.|   |. |+|||+++++++.++...            +...  .+.+++++++|+++.
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             eEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence            99999999999999999   99 999999999999998531            4433  447778899998864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=8.2e-25  Score=203.11  Aligned_cols=221  Identities=13%  Similarity=0.042  Sum_probs=179.8

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      .+.+++|++ +.+++++.++.|+|||+.+++........|.+.+..++++++++.+++++       .|+.|++||+.++
T Consensus        95 ~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-------~dg~i~iwd~~~~  166 (401)
T 4aez_A           95 YLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL-------GNGLVDIYDVESQ  166 (401)
T ss_dssp             TCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTC
T ss_pred             eEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC-------CCCeEEEEECcCC
Confidence            466677876 44566666677999999998876655543577899999999999998887       6799999999999


Q ss_pred             cEEEEEeeC-CceeEEEEeCCeEEEEEC-CEEEEEEcC-CcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE
Q 020784          167 RCIGELSFR-SEVRSVKLRRDRIIVVLE-QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (321)
Q Consensus       167 ~~~~~~~~~-~~v~~v~~~~~~~~~~~~-~~I~iwd~~-~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i  243 (321)
                      +.+..+..+ ..|.++.|+++.+++++. +.|++||++ ....+..+..|...+..++++  +++.+++ +|+.||.|++
T Consensus       167 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~-s~~~d~~v~i  243 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR--SDGLQLA-SGGNDNVVQI  243 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC--TTSSEEE-EEETTSCEEE
T ss_pred             eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc--CCCCEEE-EEeCCCeEEE
Confidence            988888644 589999999988888764 699999998 567778888877665555554  4667888 4899999999


Q ss_pred             EeeCCcc-eEEeeccccceeEEEECCCC-CEEEEEe--CCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          244 EHYASKR-TKFIMAHDSRIACFALTQDG-QLLATSS--TKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       244 ~d~~~~~-~~~l~~H~~~V~~vafspdg-~~las~S--~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ||+.... ...+..|...|.+++|+|++ .++++|+  .|++ |++||+.+++++.++..+.....+.+++++++|+++.
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEe
Confidence            9998755 56888999999999999976 5677765  7999 9999999999999998666666778899999998853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.7e-26  Score=211.45  Aligned_cols=224  Identities=13%  Similarity=0.149  Sum_probs=174.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecC----CceeEEeeeecCCceEEEEEecC-CCeEEEEeCCCCCCCCCC
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP----FREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLN  156 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~----~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~sg~~~~~~~d~  156 (321)
                      .|...|++++|+|+|++|++|+.++ |+||++..    .+....... |.+.|..++++++ ++.+++++       .|+
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-------~dg  136 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGG-------NNG  136 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEEC-------SSS
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEc-------CCC
Confidence            4677999999999999999998755 88999987    233333333 6788999999987 77777776       679


Q ss_pred             cEEEEeCCCCc------EEEEE----eeCCceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEecc------CCC
Q 020784          157 KVMIWDDHQSR------CIGEL----SFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETI------ANP  216 (321)
Q Consensus       157 ~v~iWD~~~~~------~~~~~----~~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~------~~~  216 (321)
                      +|++||+.+++      ....+    .+...|.+++|+++   .++++. ++.|++||+++++.+..+..+      ...
T Consensus       137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (416)
T 2pm9_A          137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ  216 (416)
T ss_dssp             CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCC
T ss_pred             eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCc
Confidence            99999998876      32222    24457999999976   344443 569999999999999988876      344


Q ss_pred             CceEEEeeCCCc-eEEEeecCCCC---cEEEEeeCCc--ceEEee-ccccceeEEEECC-CCCEEEEEeCCCcEEEEEEc
Q 020784          217 KGLCAVSQGVGS-LVLVCPGLQKG---QVRVEHYASK--RTKFIM-AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       217 ~~~~~~s~~~d~-~~la~sGs~dg---~V~i~d~~~~--~~~~l~-~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~  288 (321)
                      +..+++++  ++ .+++ +|+.||   .|++||+...  .+..+. +|...|++++|+| ++.+|++++.||+ |+|||+
T Consensus       217 v~~~~~~~--~~~~~l~-~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~  292 (416)
T 2pm9_A          217 LSVVEWHP--KNSTRVA-TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNP  292 (416)
T ss_dssp             EEEEEECS--SCTTEEE-EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECS
T ss_pred             eEEEEECC--CCCCEEE-EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeC
Confidence            44455554  43 4555 488888   9999999864  456787 9999999999999 9999999999999 999999


Q ss_pred             CCCcEEEEEeCCCc--ceeEEEeecC-ceEEEee
Q 020784          289 LDGTLLQEECCPSI--SAQSGLWLSS-AWLRVLR  319 (321)
Q Consensus       289 ~tg~~i~~~~~g~~--~~~~~~s~d~-~~la~~~  319 (321)
                      ++++++.++. ++.  ...+.+++++ ++|+++.
T Consensus       293 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          293 ESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             SSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECC
T ss_pred             CCCccceeec-CCCCceEEEEECCCCCCEEEEEe
Confidence            9999999986 333  3345788888 7887753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-25  Score=229.08  Aligned_cols=201  Identities=8%  Similarity=0.117  Sum_probs=162.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|||++||+|+.++ |+||+....+......  |.+.|..+++++ +..+++++       .|++|+|
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~s-------~D~~v~l   83 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVIN-------AKDTVYV   83 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEEE-------TTCEEEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CCEEEEEE-------CcCeEEE
Confidence            46788999999999999999999865 8899988776544433  567899999998 77777777       6799999


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEE-----------EEEeccCCCCceEEEeeCC
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLL-----------HQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~-----------~~l~~~~~~~~~~~~s~~~  226 (321)
                      ||+++++++..+.++..|.+++|+++  .++++. ++.|++||+.++++.           ..+..|..++..++++++.
T Consensus        84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           84 LSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             EETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             EECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence            99999999988888889999999976  455554 579999999988764           1123455566666776642


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcc-eEEeecc------------------ccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAH------------------DSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H------------------~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                       +..++ +|+.||.| +||+..+. +..+..|                  ...|++++|+|+|.+||||+.||+ |+|||
T Consensus       164 -~~~l~-~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd  239 (902)
T 2oaj_A          164 -IGTVL-ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWD  239 (902)
T ss_dssp             -EEEEE-EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEE
T ss_pred             -CCEEE-EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEE
Confidence             34555 48999999 99998765 4466655                  578999999999999999999999 99999


Q ss_pred             cCCCcEEEE
Q 020784          288 TLDGTLLQE  296 (321)
Q Consensus       288 ~~tg~~i~~  296 (321)
                      +++|+++..
T Consensus       240 ~~~g~~~~~  248 (902)
T 2oaj_A          240 ANSGHMIMA  248 (902)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCcEEEE
Confidence            999998864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=4.2e-25  Score=204.83  Aligned_cols=224  Identities=13%  Similarity=0.158  Sum_probs=172.4

Q ss_pred             cCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCC-------ceeEEeeeecCCceEEEEEecCC-CeEEEEeCCCC
Q 020784           81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRC-NILALVGGGPD  150 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~sg~~~  150 (321)
                      ...|.+.|++++|+| ++++|++|+.++ |+|||+.+.       +....... |.+.|..+++++++ +.+++++    
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~----  151 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAG----  151 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEE----
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEc----
Confidence            356888999999999 999999999866 889999876       33334443 68899999999987 5777777    


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEE--e-eCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEE-eccCCC-CceEEE
Q 020784          151 PQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI-ETIANP-KGLCAV  222 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~--~-~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l-~~~~~~-~~~~~~  222 (321)
                         .|++|+|||+++++.+..+  . +...|.+++|+++  .++++. ++.|++||+++++.+..+ ..|... ...+.+
T Consensus       152 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          152 ---CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             ---TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             ---CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence               6799999999999988887  3 4558999999875  455554 579999999999999998 566543 344555


Q ss_pred             eeCCCceEEEeec---CCCCcEEEEeeCCcc--eEEe-eccccceeEEEECCCCCEEE-EEeCCCcEEEEEEcCCCc---
Q 020784          223 SQGVGSLVLVCPG---LQKGQVRVEHYASKR--TKFI-MAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGT---  292 (321)
Q Consensus       223 s~~~d~~~la~sG---s~dg~V~i~d~~~~~--~~~l-~~H~~~V~~vafspdg~~la-s~S~Dgt~IrIWd~~tg~---  292 (321)
                      +  +++.++++ |   +.||.|++||.....  +... ..|...|.+++|+|+|.+|+ +|+.||+ |+|||+.+++   
T Consensus       229 ~--~~~~~l~~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~  304 (402)
T 2aq5_A          229 V--SEGKILTT-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFL  304 (402)
T ss_dssp             C--STTEEEEE-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCE
T ss_pred             c--CCCcEEEE-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcce
Confidence            5  45688874 7   789999999987643  3333 35788899999999999986 5557999 9999999988   


Q ss_pred             -EEEEEeCCCcceeEEEeecCceEE
Q 020784          293 -LLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       293 -~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                       .+..+........+.+++++.+++
T Consensus       305 ~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          305 HYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             EeecccccCCcccceEEecccccce
Confidence             333343223344567888887764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=3.9e-25  Score=207.43  Aligned_cols=216  Identities=12%  Similarity=0.180  Sum_probs=175.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .|...|+|++|  ||++|++|+.++ |+|||+.+++....... |.+.|.++++  +++.+++++       .|++|++|
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~sg~-------~dg~i~vw  198 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGS-------SDSTVRVW  198 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEE-------TTSCEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCCEEEEEc-------CCCeEEEE
Confidence            45567999887  799999998865 88999999887666554 5677766654  788888877       67999999


Q ss_pred             eCCCCcEEEEEeeC-CceeEEEEeCCeEEEEEC-CEEEEEEcCCcEEE---EEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          162 DDHQSRCIGELSFR-SEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~---~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      |+.+++.+..+..+ ..|.++.|+++.+++++. +.|++||+.+++.+   ..+..|...+  .++.++  +.+++ +|+
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~-s~~  273 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV--NVVDFD--DKYIV-SAS  273 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE--EEEEEE--TTEEE-EEE
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE--EEEEeC--CCEEE-EEe
Confidence            99999998888654 479999999988888764 69999999876554   5556665544  444443  36676 489


Q ss_pred             CCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceE
Q 020784          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWL  315 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~l  315 (321)
                      .||.|++||..+.. +..+.+|...|.+++|  ++.+|++|+.||+ |+|||+++++++.++. +|...+.++.+++.+|
T Consensus       274 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~l  349 (435)
T 1p22_A          274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLE-GHEELVRCIRFDNKRI  349 (435)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEEC-CCSSCEEEEECCSSEE
T ss_pred             CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEe-CCcCcEEEEEecCCEE
Confidence            99999999998765 6689999999999999  4789999999999 9999999999999984 6777777888899999


Q ss_pred             EEee
Q 020784          316 RVLR  319 (321)
Q Consensus       316 a~~~  319 (321)
                      +++.
T Consensus       350 ~sg~  353 (435)
T 1p22_A          350 VSGA  353 (435)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.5e-26  Score=207.41  Aligned_cols=200  Identities=13%  Similarity=0.157  Sum_probs=164.3

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEee--eecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRD--FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|...|++++|+| ++++|++|+.++ |+|||+.+.+......  ..|...+..++++++++.+++++       .|+.
T Consensus       112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~  184 (366)
T 3k26_A          112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-------MDHS  184 (366)
T ss_dssp             ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec-------CCCC
Confidence            46888999999999 999999999765 8899999887766551  11678999999999999998888       6799


Q ss_pred             EEEEeCCCCcEEEEEe-----------------------------eCCceeEEEEeCCeEEEEE-CCEEEEEEcCCc---
Q 020784          158 VMIWDDHQSRCIGELS-----------------------------FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADL---  204 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~-----------------------------~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~---  204 (321)
                      |++||+++++....+.                             +...|.++.|+++.++++. ++.|++||+.++   
T Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  264 (366)
T 3k26_A          185 LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDD  264 (366)
T ss_dssp             EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCC
T ss_pred             EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCcccc
Confidence            9999998876443222                             4567999999987777765 579999999765   


Q ss_pred             -----------EEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-----eEEeecc--ccceeEEEE
Q 020784          205 -----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAH--DSRIACFAL  266 (321)
Q Consensus       205 -----------~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-----~~~l~~H--~~~V~~vaf  266 (321)
                                 ..+..+..|...+..+++++++++.+|+ +|+.||.|++||+..+.     ...+.+|  ...|++++|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA-LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE-EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEE
T ss_pred             ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE-EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEe
Confidence                       4478888888888888888886568888 49999999999998642     3377787  799999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          267 TQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       267 spdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +|+|++||+|+.||+ |+|||+.+
T Consensus       344 s~~~~~l~s~~~dg~-i~iwd~~~  366 (366)
T 3k26_A          344 SRDSSILIAVCDDAS-IWRWDRLR  366 (366)
T ss_dssp             CTTSSEEEEEETTSE-EEEEEC--
T ss_pred             CCCCCeEEEEeCCCE-EEEEEecC
Confidence            999999999999999 99999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=2.1e-25  Score=207.01  Aligned_cols=223  Identities=11%  Similarity=0.072  Sum_probs=173.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      .+....|+++|++|++|+.++ |+|||+.+.+....... |.+.|..++++++++.+++++       .|++|++||+++
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s-------~d~~i~iwd~~~  170 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALISSS-------QDMQLKIWSVKD  170 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTT
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEEEe-------CCCeEEEEeCCC
Confidence            455557899999999998865 88999988776544333 688999999999999888887       679999999999


Q ss_pred             CcEEEEEee-CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccC---CCCceEEE----------------
Q 020784          166 SRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIA---NPKGLCAV----------------  222 (321)
Q Consensus       166 ~~~~~~~~~-~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~---~~~~~~~~----------------  222 (321)
                      ++.+..+.. ...|.+++|+++  .++.+. ++.|++||+++++.+..+..+.   ..+..+++                
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            988888774 458999999975  455555 5699999999999999987643   22222222                


Q ss_pred             ---eeCCCceEEEeecCCCCcEEEEeeCCcc-eEE-eeccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCcE-EE
Q 020784          223 ---SQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF-IMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL-LQ  295 (321)
Q Consensus       223 ---s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~-l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg~~-i~  295 (321)
                         .+++++.+++ +|+.||.|++||+.... ... ..+|...|++++|+|++. +|++|+.||+ |+|||+++++. +.
T Consensus       251 ~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          251 NNLEFGTYGKYVI-AGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVG  328 (420)
T ss_dssp             CTTCSSCTTEEEE-EEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSE
T ss_pred             cceEEcCCCCEEE-EEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCchh
Confidence               2345678888 49999999999998765 333 456899999999999999 9999999999 99999999854 67


Q ss_pred             EEeCCCcceeE-EEeecCceEEEee
Q 020784          296 EECCPSISAQS-GLWLSSAWLRVLR  319 (321)
Q Consensus       296 ~~~~g~~~~~~-~~s~d~~~la~~~  319 (321)
                      ++...+...+. .+++++++|+++.
T Consensus       329 ~~~~~~~~~v~~~~~~~~~~l~s~~  353 (420)
T 3vl1_A          329 EFLINEGTPINNVYFAAGALFVSSG  353 (420)
T ss_dssp             EEEESTTSCEEEEEEETTEEEEEET
T ss_pred             hhhccCCCCceEEEeCCCCEEEEec
Confidence            77543443333 4567888888763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=7.9e-25  Score=206.30  Aligned_cols=220  Identities=17%  Similarity=0.224  Sum_probs=173.9

Q ss_pred             CCCCCC-eEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPT-LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~-V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|... +.|+.|  ++++|++|+.++ |++||+.+++....... |.+.|..+++.+++ .+++++       .|++|+
T Consensus       118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s-------~dg~i~  186 (464)
T 3v7d_B          118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG-ILVSGS-------TDRTVR  186 (464)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSTT-EEEEEE-------TTSCEE
T ss_pred             cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCC-EEEEEe-------CCCCEE
Confidence            456555 566666  567999998865 88999999887766654 78899999987766 666666       679999


Q ss_pred             EEeCCCCcEEEEEee-CCceeEEEEeC--C--eEEEEE-CCEEEEEEcCCcEE-----------------------EEEE
Q 020784          160 IWDDHQSRCIGELSF-RSEVRSVKLRR--D--RIIVVL-EQKIFVYNFADLKL-----------------------LHQI  210 (321)
Q Consensus       160 iWD~~~~~~~~~~~~-~~~v~~v~~~~--~--~~~~~~-~~~I~iwd~~~~~~-----------------------~~~l  210 (321)
                      +||+++++.+..+.. ...|.++++.+  +  .+++++ ++.|++||+.+++.                       +..+
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            999999998888874 45899999873  3  345554 57999999987653                       3344


Q ss_pred             eccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       211 ~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      .+|..  .+.++++++  .+++ +|+.||.|++||+.+.. +..+.+|...|++++|+|+|.+|++|+.||+ |+|||++
T Consensus       267 ~~~~~--~v~~~~~~~--~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~  340 (464)
T 3v7d_B          267 RGHMA--SVRTVSGHG--NIVV-SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLE  340 (464)
T ss_dssp             CCCSS--CEEEEEEET--TEEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETT
T ss_pred             cCccc--eEEEEcCCC--CEEE-EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECC
Confidence            44433  355566554  6677 48999999999998765 6688999999999999999999999999999 9999999


Q ss_pred             CCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          290 DGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       290 tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      +++++.++ .+|...+.++.+++.+|+++.
T Consensus       341 ~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s  369 (464)
T 3v7d_B          341 NGELMYTL-QGHTALVGLLRLSDKFLVSAA  369 (464)
T ss_dssp             TTEEEEEE-CCCSSCEEEEEECSSEEEEEE
T ss_pred             CCcEEEEE-eCCCCcEEEEEEcCCEEEEEe
Confidence            99999999 467777778888899988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=7.5e-25  Score=220.01  Aligned_cols=226  Identities=10%  Similarity=0.061  Sum_probs=185.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|||++|++|+.++ |+|||+.+++....... |.+.+..+++++++..+++++       .|++|++
T Consensus        52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-------~dg~i~v  123 (814)
T 3mkq_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS-------DDLTVKL  123 (814)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE-------TTSEEEE
T ss_pred             ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEc-------CCCEEEE
Confidence            46778999999999999999999866 88999999887766654 688899999999999998877       6799999


Q ss_pred             EeCCCC-cEEEEEee-CCceeEEEEeC-C--eEEEEE-CCEEEEEEcCCcEEEEEEeccC-CCCceEEEeeCCCceEEEe
Q 020784          161 WDDHQS-RCIGELSF-RSEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       161 WD~~~~-~~~~~~~~-~~~v~~v~~~~-~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~-~~~~~~~~s~~~d~~~la~  233 (321)
                      ||++++ .....+.. ...|.+++|++ +  .+++++ ++.|++||+.+++....+..+. ..+..+++++.+++.+++ 
T Consensus       124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-  202 (814)
T 3mkq_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-  202 (814)
T ss_dssp             EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE-
T ss_pred             EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE-
Confidence            999887 55556654 45799999998 4  344444 5799999998888777777654 667778888766778888 


Q ss_pred             ecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc-eeEEEeec
Q 020784          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS-AQSGLWLS  311 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~-~~~~~s~d  311 (321)
                      +|+.||.|++||...+. +..+.+|...|++++|+|+|.+|++++.||+ |+|||+.+++++.++...... ..++++++
T Consensus       203 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  281 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (814)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence            48999999999988765 5688999999999999999999999999999 999999999999998654332 34466777


Q ss_pred             Cc--eEEE
Q 020784          312 SA--WLRV  317 (321)
Q Consensus       312 ~~--~la~  317 (321)
                      ++  ++++
T Consensus       282 ~~~~~~~~  289 (814)
T 3mkq_A          282 GRKNYIAS  289 (814)
T ss_dssp             CGGGEEEE
T ss_pred             CCceEEEE
Confidence            76  4554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=8.6e-25  Score=219.59  Aligned_cols=226  Identities=11%  Similarity=0.102  Sum_probs=185.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|.+.|++++|+|||++||+|+.+| |+|||+.+++....... |.+.+..++|+++++.+++++       .|+.|+|
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-------~dg~i~v   81 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGS-------DDFRIRV   81 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEE-------TTSEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEe-------CCCeEEE
Confidence            46778999999999999999999865 88999999887666654 688999999999999999888       6799999


Q ss_pred             EeCCCCcEEEEEee-CCceeEEEEeCCe--EEEEE-CCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          161 WDDHQSRCIGELSF-RSEVRSVKLRRDR--IIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      ||+.+++.+..+.. ...|.+++|+++.  ++++. ++.|++||+.++ .....+..|...+..+++++. ++..++ +|
T Consensus        82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~-~~  159 (814)
T 3mkq_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-DPSTFA-SG  159 (814)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT-EEEEEE-EE
T ss_pred             EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC-CCCEEE-EE
Confidence            99999999888874 4589999999764  55555 469999999876 777888888776666666652 446676 48


Q ss_pred             CCCCcEEEEeeCCcc-eEEeecc-ccceeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEe
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAH-DSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLW  309 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H-~~~V~~vafsp--dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s  309 (321)
                      +.||.|++||+.... ...+..| ...|++++|+|  ++.+|++|+.||+ |++||+.+++++.++. ++..  ..+.++
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~-~~~~~v~~~~~~  237 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLE-GHMSNVSFAVFH  237 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEE-CCSSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEc-CCCCCEEEEEEc
Confidence            999999999987644 4455554 48999999999  9999999999999 9999999999999885 3433  345778


Q ss_pred             ecCceEEEee
Q 020784          310 LSSAWLRVLR  319 (321)
Q Consensus       310 ~d~~~la~~~  319 (321)
                      +++++|+++.
T Consensus       238 ~~~~~l~~~~  247 (814)
T 3mkq_A          238 PTLPIIISGS  247 (814)
T ss_dssp             SSSSEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            8999988764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8.4e-27  Score=215.83  Aligned_cols=202  Identities=13%  Similarity=0.180  Sum_probs=161.0

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecCCc------eeEEe--eeecCCceEEEEEecC-CCeEEEEeCCCC
Q 020784           82 SSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR------EIFRR--DFERGGGIGVVEMLFR-CNILALVGGGPD  150 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~~~------~~~~~--~~~~~~~v~~v~~~~~-~~~~~~~sg~~~  150 (321)
                      ..|...|++++|+|+ +++|++|+.++ |+|||+.+.+      .....  ...|.+.+..++++++ +..+++++    
T Consensus       110 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----  185 (416)
T 2pm9_A          110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG----  185 (416)
T ss_dssp             CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES----
T ss_pred             cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc----
Confidence            568889999999998 89999998855 8899998775      32222  1115778999999988 56676666    


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEee-------CCceeEEEEeCC---eEEEEEC-C---EEEEEEcCCc-EEEEEEe-ccC
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRD---RIIVVLE-Q---KIFVYNFADL-KLLHQIE-TIA  214 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~-------~~~v~~v~~~~~---~~~~~~~-~---~I~iwd~~~~-~~~~~l~-~~~  214 (321)
                         .|+.|++||+++++.+..+..       ...|.+++|+++   .++++.. +   .|++||++++ +.+..+. .|.
T Consensus       186 ---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~  262 (416)
T 2pm9_A          186 ---SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ  262 (416)
T ss_dssp             ---SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS
T ss_pred             ---CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc
Confidence               579999999999998888876       457999999986   3555554 4   9999999875 5666666 666


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCc
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg-~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      ..+..+++++. ++.+|+ +|+.||.|++||+.+.. +..+.+|...|++++|+|++ .+||+++.||+ |+|||+.+++
T Consensus       263 ~~v~~~~~s~~-~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~  339 (416)
T 2pm9_A          263 KGILSLDWCHQ-DEHLLL-SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLT  339 (416)
T ss_dssp             SCEEEEEECSS-CSSCEE-EEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCC
T ss_pred             CceeEEEeCCC-CCCeEE-EEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCC
Confidence            65555555552 456777 48999999999988755 66899999999999999999 89999999999 9999999876


Q ss_pred             E
Q 020784          293 L  293 (321)
Q Consensus       293 ~  293 (321)
                      .
T Consensus       340 ~  340 (416)
T 2pm9_A          340 N  340 (416)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=1.6e-24  Score=203.57  Aligned_cols=217  Identities=16%  Similarity=0.209  Sum_probs=177.4

Q ss_pred             CCCCCCe-EEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTL-LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V-~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|.+.| .|+  +++|++|++|+.++ |+|||+.+++....... |.+.|..+.+.  ++.+++++       .|++|+
T Consensus       115 ~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~~-------~dg~i~  182 (445)
T 2ovr_B          115 KGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGS-------TDRTLK  182 (445)
T ss_dssp             ECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEE-------TTSCEE
T ss_pred             cccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CCEEEEEe-------CCCeEE
Confidence            4566654 554  45689999998865 88999999887666554 67778777664  67777777       679999


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +||+.+++.+..+..+ ..|.++.++++.+++++ ++.|++||+.+++.+..+..|...+..+++  +  +.+++ +|+.
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~-~~~~  257 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D--GRRVV-SGAY  257 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C--SSCEE-EEET
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C--CCEEE-EEcC
Confidence            9999999988888754 47999999999888886 469999999999999999888766554444  3  35666 4899


Q ss_pred             CCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       238 dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      ||.|++||..+.. +..+.+|...|.+++|  ++.+|++|+.||+ |+|||+++++++.++ .++......+++++.+|+
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~l~  333 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTL-TGHQSLTSGMELKDNILV  333 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEE-CCCCSCEEEEEEETTEEE
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEE-cCCcccEEEEEEeCCEEE
Confidence            9999999987655 6688999999999999  8899999999999 999999999999988 467777778888999988


Q ss_pred             Eee
Q 020784          317 VLR  319 (321)
Q Consensus       317 ~~~  319 (321)
                      ++.
T Consensus       334 ~~~  336 (445)
T 2ovr_B          334 SGN  336 (445)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=1.3e-24  Score=193.55  Aligned_cols=201  Identities=13%  Similarity=0.179  Sum_probs=148.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeee------------------------------------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDF------------------------------------  124 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~------------------------------------  124 (321)
                      +.|...|++++|+|+|++||+|+.++ |+||++.+++.+.....                                    
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~  143 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV  143 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeE
Confidence            45777899999999999999999866 88999988765443321                                    


Q ss_pred             ----ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE-----EEEeeCCceeEEEEeCC---eEEEEE
Q 020784          125 ----ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-----GELSFRSEVRSVKLRRD---RIIVVL  192 (321)
Q Consensus       125 ----~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~-----~~~~~~~~v~~v~~~~~---~~~~~~  192 (321)
                          .|...+..+.+...++.+++++       .|++|+|||+++++..     ........|.++.+.+.   .+.+++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          144 ATLSGHSQEVCGLRWAPDGRHLASGG-------NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             EEEcCccCceEEEEEcCCCCEEEEEe-------cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence                0233444455555566666555       6799999999876532     22234457888888753   344443


Q ss_pred             ---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECC
Q 020784          193 ---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ  268 (321)
Q Consensus       193 ---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafsp  268 (321)
                         ++.|++||............ ...+..+.+++..+ .+++++|+.||.|+|||+.++. +.++.+|.+.|++|+|+|
T Consensus       217 ~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp  294 (318)
T 4ggc_A          217 GTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP  294 (318)
T ss_dssp             CTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             cCCCCEEEEEecccccccccccc-eeeeeeeeeccccc-ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence               36999999998877666543 34455666666554 3444468899999999998765 678999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          269 DGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      ||++|||||.||+ |||||+.+..
T Consensus       295 dg~~l~S~s~D~~-v~iWd~~~~d  317 (318)
T 4ggc_A          295 DGATVASAAADET-LRLWRCFELD  317 (318)
T ss_dssp             TSSCEEEEETTTE-EEEECCSCCC
T ss_pred             CCCEEEEEecCCe-EEEEECCCCC
Confidence            9999999999999 9999997653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=3.4e-25  Score=198.41  Aligned_cols=206  Identities=13%  Similarity=0.156  Sum_probs=157.1

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEecCCc---------eeEEeeeecCCceEEEEEecC--CCeEEEEeC
Q 020784           82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFR---------EIFRRDFERGGGIGVVEMLFR--CNILALVGG  147 (321)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasg~~~g-v~vw~~~~~~---------~~~~~~~~~~~~v~~v~~~~~--~~~~~~~sg  147 (321)
                      ..|...|++++|+|  |+++|++|+.++ |+|||+.+.+         ....... |.+.+..+++.++  ++.+++++ 
T Consensus        54 ~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~-  131 (351)
T 3f3f_A           54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLG-  131 (351)
T ss_dssp             ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEE-
T ss_pred             ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEec-
Confidence            45778999999999  699999999865 8899998763         2333332 6788999999998  88888887 


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe--------------eCCceeEEEEeCC-----eEEEEEC-CEEEEEEcCCcEE-
Q 020784          148 GPDPQYPLNKVMIWDDHQSRCIGELS--------------FRSEVRSVKLRRD-----RIIVVLE-QKIFVYNFADLKL-  206 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~--------------~~~~v~~v~~~~~-----~~~~~~~-~~I~iwd~~~~~~-  206 (321)
                            .|+.|++||+++++.+..+.              +...+.++.|+++     .++++.. +.+.+|+...++. 
T Consensus       132 ------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~  205 (351)
T 3f3f_A          132 ------NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH  205 (351)
T ss_dssp             ------TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE
T ss_pred             ------CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee
Confidence                  67999999998876443322              2346888998753     4555655 4777777666654 


Q ss_pred             -EEEEeccCCCCceEEEeeCCCc--eEEEeecCCCCcEEEEeeCC-----------------------------------
Q 020784          207 -LHQIETIANPKGLCAVSQGVGS--LVLVCPGLQKGQVRVEHYAS-----------------------------------  248 (321)
Q Consensus       207 -~~~l~~~~~~~~~~~~s~~~d~--~~la~sGs~dg~V~i~d~~~-----------------------------------  248 (321)
                       +..+..|...+..+++++++..  .+|+ +|+.||.|++||+..                                   
T Consensus       206 ~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
T 3f3f_A          206 VAAKLPGHKSLIRSISWAPSIGRWYQLIA-TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT  284 (351)
T ss_dssp             EEEECCCCCSCEEEEEECCCSSCSSEEEE-EEETTSCEEEEEEEECC---------------------------------
T ss_pred             eeeecCCCCcceeEEEECCCCCCcceEEE-EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence             5666666666555565554321  6777 599999999999875                                   


Q ss_pred             ------------cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          249 ------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       249 ------------~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                                  ..+..+.+|...|++++|+|+|++||||+.||+ |+|||+.+++.+..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK-VRLWKATYSNEFKCM  344 (351)
T ss_dssp             ------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC-EEEEEECTTSCEEEE
T ss_pred             ceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc-EEEEecCcCcchhhe
Confidence                        335578899999999999999999999999999 999999998766655

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=1.5e-24  Score=202.60  Aligned_cols=226  Identities=12%  Similarity=0.094  Sum_probs=172.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|+||+|+|||++||+|+.++ |+|||+.+++.+..... |...+.++  .+++..+++++       .|+.+++
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-h~~~v~~~--s~~~~~l~sgs-------~d~~i~~  213 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSL--SWNSYILSSGS-------RSGHIHH  213 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEE--EEETTEEEEEE-------TTSEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-CCCceEEE--eeCCCEEEEEe-------CCCceeE
Confidence            45667899999999999999999866 88999999987766554 55555554  45677777777       6799999


Q ss_pred             EeCCCCc-EEEEEeeC-CceeEEEEeCC--eEEEEE-CCEEEEEEcCCcE----EEEEEeccCCCCceEEEeeCCCceEE
Q 020784          161 WDDHQSR-CIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLK----LLHQIETIANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       161 WD~~~~~-~~~~~~~~-~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~----~~~~l~~~~~~~~~~~~s~~~d~~~l  231 (321)
                      ||..... .+..+..+ ..+..+.+.++  .++.+. ++.|++|+...++    .+..+..+...+..+++++.....+.
T Consensus       214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            9988654 45555544 47888888865  344444 5799999997654    34556666666667777776555444


Q ss_pred             EeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCcEEEEEeCCCcceeE--E
Q 020784          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEECCPSISAQS--G  307 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S--~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~--~  307 (321)
                      ..+|+.||.|++||+.++.......+...|.+++|++++..|++++  .|++ |+|||+.+++++.++ .||...+.  +
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l-~gH~~~V~~l~  371 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAEL-KGHTSRVLSLT  371 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEE-CCCSSCEEEEE
T ss_pred             EEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEE-cCCCCCEEEEE
Confidence            4467899999999998877554444566799999999999988765  7899 999999999999999 47776554  6


Q ss_pred             EeecCceEEEee
Q 020784          308 LWLSSAWLRVLR  319 (321)
Q Consensus       308 ~s~d~~~la~~~  319 (321)
                      +++||++|+.+.
T Consensus       372 ~spdg~~l~S~s  383 (420)
T 4gga_A          372 MSPDGATVASAA  383 (420)
T ss_dssp             ECTTSSCEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            778999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.6e-24  Score=189.46  Aligned_cols=220  Identities=13%  Similarity=0.061  Sum_probs=175.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|.+.|++++| +++++|++|+.++ |+|||+.+.+....... |.+.+..++++++++.+++++       .|+.|+
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~dg~i~   84 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGG-------KDTMIN   84 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEE-------TTSCEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEec-------CCCeEE
Confidence            3578889999999 9999999999866 88999988876655554 688999999999999999888       679999


Q ss_pred             EEeCCCC---cEEEEEe-eCCceeEEEEeCCeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          160 IWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       160 iWD~~~~---~~~~~~~-~~~~v~~v~~~~~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +||+...   +.+..+. +...|.++.|+++.++++.. +.|++||  .++.+..+..|...+..+++.+. ++..++ +
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~-~  160 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-SENKFL-T  160 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-TTTEEE-E
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-CCCEEE-E
Confidence            9998654   4444554 44589999998888888764 6999999  67788888888777767777663 335566 4


Q ss_pred             cCCCCcEEEEeeCCcceEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeec
Q 020784          235 GLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLS  311 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~~l~~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d  311 (321)
                      |+.||.|++|| .......+.. |...|.+++|+|++. |++++.||. |+|||+++++++.++. ++...+  +.++++
T Consensus       161 ~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~  236 (313)
T 3odt_A          161 ASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYE-GHESFVYCIKLLPN  236 (313)
T ss_dssp             EETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEE-CCSSCEEEEEECTT
T ss_pred             EECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhh-cCCceEEEEEEecC
Confidence            89999999999 3444566776 999999999999998 899999999 9999999999999985 444433  466677


Q ss_pred             CceEEEe
Q 020784          312 SAWLRVL  318 (321)
Q Consensus       312 ~~~la~~  318 (321)
                      ++ |+++
T Consensus       237 ~~-l~~~  242 (313)
T 3odt_A          237 GD-IVSC  242 (313)
T ss_dssp             SC-EEEE
T ss_pred             CC-EEEE
Confidence            74 4443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.8e-25  Score=206.41  Aligned_cols=224  Identities=9%  Similarity=0.061  Sum_probs=174.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCc---eeEEeeee-------------------------------------
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---EIFRRDFE-------------------------------------  125 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~---~~~~~~~~-------------------------------------  125 (321)
                      .++.+++|++||++|+++.++.|++||+.+++   .+..+...                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            37899999999999999888889999999887   44333210                                     


Q ss_pred             ----------------cCCceEEEEEecCCCeE-EEEeCCCCCCCCCCcEEEEeCC--CCcEEEEEe---eCCceeEEEE
Q 020784          126 ----------------RGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS---FRSEVRSVKL  183 (321)
Q Consensus       126 ----------------~~~~v~~v~~~~~~~~~-~~~sg~~~~~~~d~~v~iWD~~--~~~~~~~~~---~~~~v~~v~~  183 (321)
                                      |.+.|..++++++++.+ ++++       .|++|+|||+.  +++.+..+.   +...|.+++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD-------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEG-------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC-------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence                            12258899999999986 5554       57999999999  888777764   3468999999


Q ss_pred             eCC--eEEEEE-CCEEEEEEcCCcEEEE----EEeccCCCCceEEEeeC-CCceEEEeecCCCCcEEEEeeCCcc-eEE-
Q 020784          184 RRD--RIIVVL-EQKIFVYNFADLKLLH----QIETIANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYASKR-TKF-  253 (321)
Q Consensus       184 ~~~--~~~~~~-~~~I~iwd~~~~~~~~----~l~~~~~~~~~~~~s~~-~d~~~la~sGs~dg~V~i~d~~~~~-~~~-  253 (321)
                      +++  .++++. ++.|++|++.+++...    .+..|...+..++++++ ..+.+|+ +|+.||.|++||+..+. +.. 
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII-TSDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE-EEETTSCEEEEEESCTTCEEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE-EEcCCCcEEEEECCCCceeeee
Confidence            876  455554 4699999998776543    66677766667777775 1157777 58999999999998765 445 


Q ss_pred             eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC--------------------------cceeEE
Q 020784          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS--------------------------ISAQSG  307 (321)
Q Consensus       254 l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~--------------------------~~~~~~  307 (321)
                      +.+|...|++++|+ +|.+|++|+.|++ |+|||+++++++.++..++                          ....+.
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence            66899999999999 9999999999999 9999999999999886321                          123446


Q ss_pred             EeecCceEEEee
Q 020784          308 LWLSSAWLRVLR  319 (321)
Q Consensus       308 ~s~d~~~la~~~  319 (321)
                      +++++++|+++.
T Consensus       315 ~~~~~~~l~~~~  326 (450)
T 2vdu_B          315 KSKNLPFVAFFV  326 (450)
T ss_dssp             ECSSSSEEEEEE
T ss_pred             EeCCCCEEEEEE
Confidence            778899988764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.94  E-value=3.2e-25  Score=200.60  Aligned_cols=229  Identities=10%  Similarity=0.083  Sum_probs=172.7

Q ss_pred             CCCCCCeEEEEEcCCCCE-EEEEcC---C-cEEEEEecCCceeEEeeeecCCceEEEEEecC---CCeEEEEeCCCCCCC
Q 020784           82 SSPPPTLLHISFNQDHGC-FAAGTD---H-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFR---CNILALVGGGPDPQY  153 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~-lasg~~---~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~~~sg~~~~~~  153 (321)
                      ..|...|++++|+|+|.. +++|+.   + .|+|||+.+.+........|...+..++++++   ++.+++++       
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-------   87 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD-------   87 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE-------
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec-------
Confidence            458889999999999965 456654   4 48899999887655544446889999999887   58888877       


Q ss_pred             CCCcEEEEeCCCCc-EEEEEee-CCceeEEEEe------CC--eEEEEE-CCEEEEEEcCCcE-EEEEEeccCC--CCce
Q 020784          154 PLNKVMIWDDHQSR-CIGELSF-RSEVRSVKLR------RD--RIIVVL-EQKIFVYNFADLK-LLHQIETIAN--PKGL  219 (321)
Q Consensus       154 ~d~~v~iWD~~~~~-~~~~~~~-~~~v~~v~~~------~~--~~~~~~-~~~I~iwd~~~~~-~~~~l~~~~~--~~~~  219 (321)
                      .|+.|++||+.+++ .+..+.. ...|.++.|.      ++  .++++. ++.|++||+++++ .+..+..+..  ...+
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            67999999999887 6666664 4579998764      33  555555 4699999998876 6777766543  2234


Q ss_pred             EEEe----eCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECC---CCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          220 CAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       220 ~~~s----~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafsp---dg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      .++.    ..+++.+++ +|+.||.|++||+..........|...|++++|+|   ++.+|++|+.||. |+|||+++++
T Consensus       168 ~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~  245 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVC-AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQH  245 (357)
T ss_dssp             EEEEEECCCC-CCCEEE-EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEE-EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCC
Confidence            3433    455668887 48999999999999888777788999999999999   9999999999999 9999999876


Q ss_pred             EEEEEe----CCCccee--EEEeecCc-eEEEee
Q 020784          293 LLQEEC----CPSISAQ--SGLWLSSA-WLRVLR  319 (321)
Q Consensus       293 ~i~~~~----~g~~~~~--~~~s~d~~-~la~~~  319 (321)
                      .+..+.    .++...+  +.++++++ +|+++.
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence            554442    2444433  46677777 677653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=9.3e-25  Score=229.31  Aligned_cols=226  Identities=12%  Similarity=0.123  Sum_probs=186.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|.+.|++++|+|||++||+|+.++ |+|||+.+++....... |.+.|.+++++++++.+++++       .|++|+
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~-------~d~~v~  682 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCS-------ADKKVK  682 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEEEe-------CCCeEE
Confidence            357888999999999999999998865 88999999887766654 788999999999999999888       679999


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeC--C--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRR--D--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~--~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      |||+.+++.+..+..+ ..|.++.|++  +  .++.++ ++.|++||+.+++.+.++.+|...+..+++++  ++.+++ 
T Consensus       683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~-  759 (1249)
T 3sfz_A          683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP--DDELLA-  759 (1249)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS--STTEEE-
T ss_pred             EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec--CCCEEE-
Confidence            9999999998888755 4799999987  3  244444 46999999999999999998887766666665  457777 


Q ss_pred             ecCCCCcEEEEeeCCcce-EE-------------------------------------------------------eecc
Q 020784          234 PGLQKGQVRVEHYASKRT-KF-------------------------------------------------------IMAH  257 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~-~~-------------------------------------------------------l~~H  257 (321)
                      +|+.||.|++||+..... ..                                                       ..+|
T Consensus       760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence            589999999999754321 11                                                       1278


Q ss_pred             ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEeecCceEEEee
Q 020784          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWLSSAWLRVLR  319 (321)
Q Consensus       258 ~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~d~~~la~~~  319 (321)
                      ...|++++|+|++.++++++.||+ |+|||+.+++++..+. +|...  .+.++++|++|+++.
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s  901 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTAS  901 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEe
Confidence            899999999999999999999999 9999999999999884 55544  347788899988764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.5e-26  Score=218.87  Aligned_cols=225  Identities=8%  Similarity=-0.052  Sum_probs=166.3

Q ss_pred             CCCCeEEEEEcCCC---------CEEEEEc-------------------CC-cEEEEEecCCceeE----EeeeecCCce
Q 020784           84 PPPTLLHISFNQDH---------GCFAAGT-------------------DH-GFRIYNCDPFREIF----RRDFERGGGI  130 (321)
Q Consensus        84 ~~~~V~~v~fs~dg---------~~lasg~-------------------~~-gv~vw~~~~~~~~~----~~~~~~~~~v  130 (321)
                      +.+.|++++|+|++         ++||+|+                   .+ .|+||++++.+...    .... |.+.|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~-~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH-SFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEE-CCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEe-cCCcE
Confidence            45789999999987         7787755                   33 37899998776432    1222 46789


Q ss_pred             EEEEEecC------CCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE-----------EEEee-CCceeEEEEeCC-eEEEE
Q 020784          131 GVVEMLFR------CNILALVGGGPDPQYPLNKVMIWDDHQSRCI-----------GELSF-RSEVRSVKLRRD-RIIVV  191 (321)
Q Consensus       131 ~~v~~~~~------~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~-----------~~~~~-~~~v~~v~~~~~-~~~~~  191 (321)
                      ..++|+++      +..+++++       .|++|+|||+.++...           ..+.. ...|.+++|+++ .++++
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s-------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasg  283 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVS-------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCG  283 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEE-------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEE
T ss_pred             EEEEECCCCCCCCCCceEEEEe-------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEE
Confidence            99999886      45777777       6899999999866421           23433 357999999865 44455


Q ss_pred             E-CCEEEEEEcCCc-EEEEEEeccCCCCceEEEeeCCCc-eEEEeecCCCCcEEEEeeCCcc-eEEeecccc--ceeEEE
Q 020784          192 L-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS--RIACFA  265 (321)
Q Consensus       192 ~-~~~I~iwd~~~~-~~~~~l~~~~~~~~~~~~s~~~d~-~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~--~V~~va  265 (321)
                      + +++|++||++++ .....+..|...+..+++.+.+++ .+|| +|+.||+|+|||+.... ..++.+|..  .|++|+
T Consensus       284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la-S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS-TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE-EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE
T ss_pred             eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE-EeccCCeEEEEECCCCCcccccccccccCcccceE
Confidence            4 479999999865 344567888777666544555565 6777 69999999999987644 557778864  589999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       266 fspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      |+|+++.||+++.|++ |||||++++++++++. +|...+  +++++++++|+.+.
T Consensus       363 fsp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          363 YCPQIYSYIYSDGASS-LRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             EETTTTEEEEECSSSE-EEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEE
T ss_pred             eCCCcCeEEEeCCCCc-EEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEE
Confidence            9999999999999999 9999999999988875 565444  47778889988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=8.4e-25  Score=205.19  Aligned_cols=217  Identities=11%  Similarity=0.209  Sum_probs=175.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|  ++++|++|+.++ |+|||+.+++....... |.+.+..+++  +++.+++++       .|++|++
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s-------~dg~i~v  237 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF--NNGMMVTCS-------KDRSIAV  237 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEEC--CTTEEEEEE-------TTSCEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEE--cCCEEEEee-------CCCcEEE
Confidence            568889999999  789999998865 88999999887666554 5666766665  567777777       6799999


Q ss_pred             EeCCCCcEE---EEEe-eCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          161 WDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       161 WD~~~~~~~---~~~~-~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      ||+.++...   ..+. +...|.++.+..+.+++++ ++.|++||+++++.+.++..|...+..+.+  ++  .+++ +|
T Consensus       238 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~--~~l~-~g  312 (435)
T 1p22_A          238 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RD--RLVV-SG  312 (435)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ET--TEEE-EE
T ss_pred             EeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CC--CEEE-EE
Confidence            999887654   3333 3458999999888888886 469999999999999999988766544444  33  5666 48


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc---------EEEEEeCCCccee
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT---------LLQEECCPSISAQ  305 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~---------~i~~~~~g~~~~~  305 (321)
                      +.||.|++||+.++. +.++.+|...|++++|  ++.+|++|+.||+ |+|||+.+++         ++.++ .+|...+
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v  388 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTL-VEHSGRV  388 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCC
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeec-cCCCCCe
Confidence            999999999998655 6689999999999999  7899999999999 9999998877         88888 5677777


Q ss_pred             EEEeecCceEEEee
Q 020784          306 SGLWLSSAWLRVLR  319 (321)
Q Consensus       306 ~~~s~d~~~la~~~  319 (321)
                      .++.+++++|+++.
T Consensus       389 ~~l~~~~~~l~s~s  402 (435)
T 1p22_A          389 FRLQFDEFQIVSSS  402 (435)
T ss_dssp             CCEEECSSCEEECC
T ss_pred             EEEEeCCCEEEEEe
Confidence            77778999988754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=1.1e-24  Score=211.23  Aligned_cols=222  Identities=13%  Similarity=0.134  Sum_probs=178.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCC----ceeEEeeeecCCc-eEEEEEec--CCCeEEEEeCCCCCCCCC
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF----REIFRRDFERGGG-IGVVEMLF--RCNILALVGGGPDPQYPL  155 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~----~~~~~~~~~~~~~-v~~v~~~~--~~~~~~~~sg~~~~~~~d  155 (321)
                      .|.+.|++++|+|||++||+|+++.++||++++.    +....... |.+. |.++++++  +++.+++++       .|
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~-------~d   87 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGD-------ES   87 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEE-------TT
T ss_pred             CccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCCEEEEec-------CC
Confidence            4667899999999999999999888999999987    66555544 6778 99999999  999998887       67


Q ss_pred             CcEEEEeCCCC--------cEEEEEe-eCCceeEEEEeCC--eEEEEEC-----CEEEEEEcCCcEEEEEEeccCCCCce
Q 020784          156 NKVMIWDDHQS--------RCIGELS-FRSEVRSVKLRRD--RIIVVLE-----QKIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       156 ~~v~iWD~~~~--------~~~~~~~-~~~~v~~v~~~~~--~~~~~~~-----~~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                      ++|+|||+.++        ..+..+. +...|.+++|+++  .++++..     +.|++||  .++.+..+..|...+..
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~  165 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINA  165 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEE
Confidence            99999999754        5555665 4458999999986  4555554     3788887  56677888888776666


Q ss_pred             EEEeeCCCce-EEEeecCCCCcEEEEeeCCcc-eEEeecccc---ceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          220 CAVSQGVGSL-VLVCPGLQKGQVRVEHYASKR-TKFIMAHDS---RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       220 ~~~s~~~d~~-~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~---~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      ++++++  +. +++ +|+.||.|++||..... +..+.+|..   .|++++|+|+ |++|++++.||. |+|||++++++
T Consensus       166 ~~~~~~--~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~  241 (615)
T 1pgu_A          166 CHLKQS--RPMRSM-TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEF  241 (615)
T ss_dssp             EEECSS--SSCEEE-EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCE
T ss_pred             EEECCC--CCcEEE-EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCE
Confidence            666654  44 455 58999999999988765 568899999   9999999999 999999999999 99999999999


Q ss_pred             EEEEeC---CCcceeE--EEeecCceEEEee
Q 020784          294 LQEECC---PSISAQS--GLWLSSAWLRVLR  319 (321)
Q Consensus       294 i~~~~~---g~~~~~~--~~s~d~~~la~~~  319 (321)
                      +.++..   ++...+.  .++ ++++|+++.
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~  271 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVG  271 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred             eEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence            998844   5554444  555 899988764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.1e-25  Score=222.56  Aligned_cols=230  Identities=17%  Similarity=0.131  Sum_probs=170.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecC--CCeEEEEeCCCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPLN  156 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~d~  156 (321)
                      ...|.+.|++++|+|+|++|++|+.+| |+|||+..........+. |.+.|..++++++  ++.+++++       .||
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s-------~Dg   77 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDG   77 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE-------TTS
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe-------CCC
Confidence            457889999999999999999998766 889999854333333332 6788999999887  78888887       689


Q ss_pred             cEEEEeCCCCc--EEEEEe-eCCceeEEEEeCC----eEEEEE-CCEEEEEEcCCcE--EEEEEeccCCCCceEEEeeCC
Q 020784          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       157 ~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~~~~~~-~~~I~iwd~~~~~--~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      +|++||+.+++  .+..+. +...|.++.|+++    .+++++ ++.|++||++++.  ....+..|...+..+++++..
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            99999999886  444444 4458999999875    455555 4799999998763  334455565555555555521


Q ss_pred             -----------CceEEEeecCCCCcEEEEeeCCc-----ceEEeeccccceeEEEECCC---CCEEEEEeCCCcEEEEEE
Q 020784          227 -----------GSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       227 -----------d~~~la~sGs~dg~V~i~d~~~~-----~~~~l~~H~~~V~~vafspd---g~~las~S~Dgt~IrIWd  287 (321)
                                 ++.+++ +|+.||.|++||+...     ....+.+|...|++++|+|+   |.+|++|+.||+ |+|||
T Consensus       158 ~~~~~~~~~~~d~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd  235 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWT  235 (753)
T ss_dssp             ---------CGGGCCEE-EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEE
T ss_pred             cccccccccCCCCCEEE-EEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEec
Confidence                       456777 4899999999998764     23478899999999999999   999999999999 99999


Q ss_pred             cCCCcEE--EEEe--CCCc--ceeEEEeecCceEEEee
Q 020784          288 TLDGTLL--QEEC--CPSI--SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       288 ~~tg~~i--~~~~--~g~~--~~~~~~s~d~~~la~~~  319 (321)
                      +.+++..  ....  .++.  ...++++++|++|+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence            9987411  1111  1222  33458889999998763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=6.1e-25  Score=198.00  Aligned_cols=223  Identities=12%  Similarity=0.035  Sum_probs=170.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc----eeEEeeeecCCceEEEEEecCCC-eEEEEeCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~----~~~~~~~~~~~~v~~v~~~~~~~-~~~~~sg~~~~~~~  154 (321)
                      ...|.+.|++++|+|+|++|++|+.++ |+||++.+.+    .....  .|...+..++++++++ .+++++       .
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-------~   77 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGT-------V   77 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEE-------T
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEc-------C
Confidence            346888999999999999999988755 8899998876    32222  2688999999999998 888877       6


Q ss_pred             CCcEEEEeC-CCCcEEEEEe--eCCceeEEEEeC-CeEEEEE-CCEEEEEEcCC---------cEEEEEEeccCCCCceE
Q 020784          155 LNKVMIWDD-HQSRCIGELS--FRSEVRSVKLRR-DRIIVVL-EQKIFVYNFAD---------LKLLHQIETIANPKGLC  220 (321)
Q Consensus       155 d~~v~iWD~-~~~~~~~~~~--~~~~v~~v~~~~-~~~~~~~-~~~I~iwd~~~---------~~~~~~l~~~~~~~~~~  220 (321)
                      |+.|++||+ .+++......  +...|.+++|++ +.++++. ++.|++||+++         ++.+.++. +...  +.
T Consensus        78 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~--v~  154 (342)
T 1yfq_A           78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK--IF  154 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC--EE
T ss_pred             CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc--eE
Confidence            799999999 8887643333  556899999995 4555554 56999999986         65555554 3333  44


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCC-cc--e-EEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEEEcCCC----
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR--T-KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG----  291 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~-~~--~-~~l~~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~tg----  291 (321)
                      ++...+++  ++ +|+.||.|++||+.. ..  . .....|...|++++|+| ++.+|++++.||. |+||++..+    
T Consensus       155 ~~~~~~~~--l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~  230 (342)
T 1yfq_A          155 TMDTNSSR--LI-VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDY  230 (342)
T ss_dssp             EEEECSSE--EE-EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCST
T ss_pred             EEEecCCc--EE-EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCccc
Confidence            55555554  44 488999999999987 33  2 25567899999999999 9999999999999 999999887    


Q ss_pred             --cEEEEEeCCC----------cceeEEEeecCceEEEee
Q 020784          292 --TLLQEECCPS----------ISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       292 --~~i~~~~~g~----------~~~~~~~s~d~~~la~~~  319 (321)
                        +.+.++....          ....+.+++++++|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  270 (342)
T 1yfq_A          231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred             ccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence              7777775332          233447778899998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.6e-25  Score=202.31  Aligned_cols=224  Identities=10%  Similarity=0.083  Sum_probs=175.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCc---------------eEEEEEecCCCeEEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGG---------------IGVVEMLFRCNILALV  145 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~---------------v~~v~~~~~~~~~~~~  145 (321)
                      ..|...|++++|+|+|++|++++.++ +++||+.+.+....... +...               +..+.+.+++ .++++
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  223 (425)
T 1r5m_A          146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL-KETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIP  223 (425)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC-C---------------CCCBSCCEEEETT-EEEEE
T ss_pred             cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec-cccCccceeeccccCCcceeeEEEEcCCC-EEEEE
Confidence            45778999999999999999988755 88999998877655543 2333               6666776653 45555


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEee-CCceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEE
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~-~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~  221 (321)
                      +       .++.|++||+.+++.+..+.. ...|.+++|+++.  ++++. ++.|++||+++++.+..+..|...+..++
T Consensus       224 ~-------~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  296 (425)
T 1r5m_A          224 G-------PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS  296 (425)
T ss_dssp             C-------GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred             c-------CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence            4       579999999999887777654 4589999998753  55555 57999999999998888887776665666


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc--------
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--------  292 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~--------  292 (321)
                      +++  ++ +++ +|+.||.|++||+.... +..+..|...|++++|+|+|++||+++.||. |+|||+.+++        
T Consensus       297 ~~~--~~-~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~  371 (425)
T 1r5m_A          297 WVG--DD-KVI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYG  371 (425)
T ss_dssp             EET--TT-EEE-EEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC-------
T ss_pred             ECC--CC-EEE-EEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeec
Confidence            655  44 555 48899999999997755 5688899999999999999999999999999 9999999998        


Q ss_pred             ------------EEEEEeCCC---cceeEEEeecCceEEEee
Q 020784          293 ------------LLQEECCPS---ISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       293 ------------~i~~~~~g~---~~~~~~~s~d~~~la~~~  319 (321)
                                  ++.++....   ....+.+++++++|+++.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  413 (425)
T 1r5m_A          372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY  413 (425)
T ss_dssp             -------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred             ccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence                        888885432   333457788899998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=2.1e-25  Score=200.90  Aligned_cols=199  Identities=10%  Similarity=0.027  Sum_probs=149.8

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecC--CCeEEEEeCCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (321)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~d  155 (321)
                      ..|.+.|++++|++  +|++|++|+.|+ |+|||+.+........+. |.+.|..++++++  +..+++++       .|
T Consensus        54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs-------~D  126 (316)
T 3bg1_A           54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS-------SD  126 (316)
T ss_dssp             ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEEC-------SS
T ss_pred             cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEc-------CC
Confidence            46888999999986  489999998754 899999876422222221 6778999999887  56777766       68


Q ss_pred             CcEEEEeCCCCcEE---EEEe-eCCceeEEEEeCC-------------------eEEEEE-CCEEEEEEcCCc---EEEE
Q 020784          156 NKVMIWDDHQSRCI---GELS-FRSEVRSVKLRRD-------------------RIIVVL-EQKIFVYNFADL---KLLH  208 (321)
Q Consensus       156 ~~v~iWD~~~~~~~---~~~~-~~~~v~~v~~~~~-------------------~~~~~~-~~~I~iwd~~~~---~~~~  208 (321)
                      ++|++||++.+...   ..+. +...|.++.|+++                   .++.++ |+.|++||++..   +.+.
T Consensus       127 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  206 (316)
T 3bg1_A          127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ  206 (316)
T ss_dssp             SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEE
T ss_pred             CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceee
Confidence            99999999876422   1122 2346888888875                   344444 579999999754   5677


Q ss_pred             EEeccCCCCceEEEeeCC--CceEEEeecCCCCcEEEEeeCCc-----ceEEeeccccceeEEEECCCCCEEEEEeCCCc
Q 020784          209 QIETIANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (321)
Q Consensus       209 ~l~~~~~~~~~~~~s~~~--d~~~la~sGs~dg~V~i~d~~~~-----~~~~l~~H~~~V~~vafspdg~~las~S~Dgt  281 (321)
                      ++..|...+..+++++++  ++.+|| +|+.||+|+||+....     ....+..|...|++++|+|+|++||+|+.||+
T Consensus       207 ~l~~h~~~V~~v~~sp~~~~~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          207 KLEAHSDWVRDVAWAPSIGLPTSTIA-SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             CCBCCSSCEEEEECCCCSSCSCCEEE-EEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             ecccCCCceEEEEecCCCCCCCceEE-EEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            788887776666666653  236677 6999999999998652     23456789999999999999999999999999


Q ss_pred             EEEEEEcC
Q 020784          282 LVRIFNTL  289 (321)
Q Consensus       282 ~IrIWd~~  289 (321)
                       |+||+..
T Consensus       286 -v~lw~~~  292 (316)
T 3bg1_A          286 -VTLWKES  292 (316)
T ss_dssp             -EEEEEEC
T ss_pred             -EEEEEEC
Confidence             9999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=3.9e-24  Score=198.51  Aligned_cols=223  Identities=11%  Similarity=0.054  Sum_probs=167.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|+|++|++|+.++ |+|||+.+.+....... |.+.|..++++++++.+++++       .|++|++
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~-------~d~~v~i  207 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLSAS-------LDGTIRL  207 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEEEE-------TTSCEEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEEEc-------CCCcEEE
Confidence            57888999999999999999999865 88999998877665554 688999999999999998887       6799999


Q ss_pred             EeCCCCcEEEEEeeC----CceeEEEE---------------------eCC--eEEEEE-CCEEEEEEcCCcEEEEEEec
Q 020784          161 WDDHQSRCIGELSFR----SEVRSVKL---------------------RRD--RIIVVL-EQKIFVYNFADLKLLHQIET  212 (321)
Q Consensus       161 WD~~~~~~~~~~~~~----~~v~~v~~---------------------~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~  212 (321)
                      ||+++++.+..+..+    ..|.++.+                     +++  .++++. ++.|++||+++++.+..+..
T Consensus       208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  287 (420)
T 3vl1_A          208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS  287 (420)
T ss_dssp             EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence            999999988887642    24555554                     343  344444 46999999999888777754


Q ss_pred             -cCCCCceEEEeeCCCce-EEEeecCCCCcEEEEeeCCcc--eEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          213 -IANPKGLCAVSQGVGSL-VLVCPGLQKGQVRVEHYASKR--TKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       213 -~~~~~~~~~~s~~~d~~-~la~sGs~dg~V~i~d~~~~~--~~~l~~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                       |...+..+++  .+++. +++ +|+.||.|++||+....  +..+.+ |...|+++.| +++.+|++++.||+ |+|||
T Consensus       288 ~~~~~v~~~~~--~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~-v~iw~  362 (420)
T 3vl1_A          288 KFTCSCNSLTV--DGNNANYIY-AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTS-IKLDI  362 (420)
T ss_dssp             TTSSCEEEEEE--CSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE-EEEEE
T ss_pred             ccCCCceeEEE--eCCCCCEEE-EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCcc-EEEEe
Confidence             4444444455  44555 666 59999999999998643  567777 6777888855 57889999999999 99999


Q ss_pred             cCCCcE---------EEEEeCCCc--ceeEEEeecCc----eEEEe
Q 020784          288 TLDGTL---------LQEECCPSI--SAQSGLWLSSA----WLRVL  318 (321)
Q Consensus       288 ~~tg~~---------i~~~~~g~~--~~~~~~s~d~~----~la~~  318 (321)
                      +.+...         ...+ .++.  ...+++++|++    .+++.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~g~l~a~g  407 (420)
T 3vl1_A          363 ISDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDDESNGEVLEVG  407 (420)
T ss_dssp             ECCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred             ccCCCCCccceeccCccEE-ccCCcceEEEEEccCCCCcceEEEEc
Confidence            987321         1112 2333  34558888888    55553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=2.6e-24  Score=197.76  Aligned_cols=221  Identities=13%  Similarity=0.123  Sum_probs=164.9

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeee-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           83 SPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        83 ~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .|...|++++|+| ++++|++|+.++ |++||+........... .+...+..++++++++.+++++       .|+.|+
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i~  188 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD-------STGRLL  188 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE-------TTSEEE
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC-------CCCCEE
Confidence            5888999999999 789999998865 88999986433222211 0236699999999999998887       679999


Q ss_pred             EEeCCCCcEEEEEee-CCceeEEEEeCC---eEEEEE-CCEEEEEEcCC----cEEEEEEeccCCCCceEEEeeCC-Cce
Q 020784          160 IWDDHQSRCIGELSF-RSEVRSVKLRRD---RIIVVL-EQKIFVYNFAD----LKLLHQIETIANPKGLCAVSQGV-GSL  229 (321)
Q Consensus       160 iWD~~~~~~~~~~~~-~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~----~~~~~~l~~~~~~~~~~~~s~~~-d~~  229 (321)
                      +||+ +++.+..+.. ...|.+++|+++   .++++. ++.|++||+++    ++.+..+ .|...+..+++  .+ ++.
T Consensus       189 i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~--s~~~~~  264 (383)
T 3ei3_B          189 LLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYF--NPTDST  264 (383)
T ss_dssp             EEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEE--CTTTSC
T ss_pred             EEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEE--cCCCCC
Confidence            9999 4666666664 458999999986   355554 56999999987    6677776 45554444444  45 557


Q ss_pred             EEEeecCCCCcEEEEeeCCcc-eEEeeccc-----------------cceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHD-----------------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~-~~~l~~H~-----------------~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      +|+ +|+.||.|++||+.+.. ...+.+|.                 ..+..++|+|+|++  +|+.||+ |+|||+.++
T Consensus       265 ~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~  340 (383)
T 3ei3_B          265 KLL-TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSG  340 (383)
T ss_dssp             EEE-EEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTC
T ss_pred             EEE-EEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCC
Confidence            787 48899999999987654 34555543                 33445777787776  7889999 999999999


Q ss_pred             cEEEEEeCCC-cc--eeEEEeecCceEEEe
Q 020784          292 TLLQEECCPS-IS--AQSGLWLSSAWLRVL  318 (321)
Q Consensus       292 ~~i~~~~~g~-~~--~~~~~s~d~~~la~~  318 (321)
                      +++.++...+ ..  ..+.+++++++|+.+
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          341 GLVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             CEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             ceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            9999996422 22  234788999999876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=8.3e-25  Score=197.19  Aligned_cols=194  Identities=7%  Similarity=0.023  Sum_probs=132.0

Q ss_pred             CCCCCCeEEEEEcCC----CCEEEEEcC---------------------CcEEEEEecC-CceeEEeeeecCCceEEEEE
Q 020784           82 SSPPPTLLHISFNQD----HGCFAAGTD---------------------HGFRIYNCDP-FREIFRRDFERGGGIGVVEM  135 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d----g~~lasg~~---------------------~gv~vw~~~~-~~~~~~~~~~~~~~v~~v~~  135 (321)
                      ..+-..|++++|+||    ++++++++.                     +.|++|++.+ ++.+..... |...+..+++
T Consensus       108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~-~~~~v~~l~f  186 (356)
T 2w18_A          108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL-MPPEETILTF  186 (356)
T ss_dssp             SSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE-CCCSSCEEEE
T ss_pred             cccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc-CCCceeeEEe
Confidence            445568999999999    888887653                     3355555533 333222222 4445555555


Q ss_pred             ec---CCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC----ceeEEEEeCCeEEE--------------EE-C
Q 020784          136 LF---RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS----EVRSVKLRRDRIIV--------------VL-E  193 (321)
Q Consensus       136 ~~---~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~----~v~~v~~~~~~~~~--------------~~-~  193 (321)
                      ++   ++..++.++       .|++|||||+++++++.++..+.    .+.++.|+++...+              +. +
T Consensus       187 s~~~g~~~~LaSgS-------~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D  259 (356)
T 2w18_A          187 AEVQGMQEALLGTT-------IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV  259 (356)
T ss_dssp             EEEETSTTEEEEEE-------TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred             eccCCCCceEEEec-------CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence            55   445555555       68999999999999999987432    46667788765432              11 3


Q ss_pred             CEEEEEEcCCcEEEEEEe-----ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeecccccee-EEEE
Q 020784          194 QKIFVYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA-CFAL  266 (321)
Q Consensus       194 ~~I~iwd~~~~~~~~~l~-----~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~-~vaf  266 (321)
                      ++|++||..+++.+..+.     +|..  ...+.+.+  +.++| +|+.||+|+|||+.++. +.+|.+|...|. +++|
T Consensus       260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~--~~lsg~~s--g~~lA-SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf  334 (356)
T 2w18_A          260 FQLIVINPKTTLSVGVMLYCLPPGQAG--RFLEGDVK--DHCAA-AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW  334 (356)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCTTCCC--CEEEEEEE--TTEEE-EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred             cEEEEEECCCCEEEEEEEeeccCCCcc--eeEccccC--CCEEE-EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence            599999999999887663     2222  13333332  35666 69999999999999876 668999987655 6999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEEcC
Q 020784          267 TQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       267 spdg~~las~S~Dgt~IrIWd~~  289 (321)
                      ||||++|||||.|++ |||||+.
T Consensus       335 SPDG~~LaSGS~D~T-IklWd~~  356 (356)
T 2w18_A          335 SGTDSHLLAGQKDGN-IFVYHYS  356 (356)
T ss_dssp             CSSSSEEEEECTTSC-EEEEEEC
T ss_pred             CCCCCEEEEEECCCc-EEEecCC
Confidence            999999999999999 9999963

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=1.8e-23  Score=188.02  Aligned_cols=225  Identities=12%  Similarity=0.072  Sum_probs=172.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|++++|+|||++|++|+.++ +++|+............ +...+....+.+.++.+++++       .|+.+++
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s-------~d~~~~~  154 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGS-------RDKTIKL  154 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEE-------TTSCEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecC-CCCceeEEEEeecCccceeec-------CCCeEEE
Confidence            56888999999999999999999866 77999988776655544 466777778888888888877       6799999


Q ss_pred             EeCCCCcEEEEE-e-eCCceeEEEEeCC---e-EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          161 WDDHQSRCIGEL-S-FRSEVRSVKLRRD---R-IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       161 WD~~~~~~~~~~-~-~~~~v~~v~~~~~---~-~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      ||.......... . +...+..+.|..+   . ++.+. ++.|++||+++++.+..+..|...+..+++++  ++.+|+ 
T Consensus       155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~-  231 (340)
T 4aow_A          155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP--DGSLCA-  231 (340)
T ss_dssp             ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEE-
T ss_pred             EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC--CCCEEE-
Confidence            998876543322 2 2346888888653   2 33343 56999999999999999998877766666554  567888 


Q ss_pred             ecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC--------CCccee
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC--------PSISAQ  305 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~--------g~~~~~  305 (321)
                      +|+.||.|++||+..........+...|.+++|+|++.+++ ++.|++ |+|||++++.++.++..        ++...+
T Consensus       232 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (340)
T 4aow_A          232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC-AATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQC  309 (340)
T ss_dssp             EEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE-EEETTE-EEEEETTTTEEEEEECCC-------CCCCCE
T ss_pred             EEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee-ccCCCE-EEEEECCCCeEEEeccccceeeeccCCCCCE
Confidence            59999999999998766443334567899999999987655 556999 99999999998887642        333333


Q ss_pred             --EEEeecCceEEEee
Q 020784          306 --SGLWLSSAWLRVLR  319 (321)
Q Consensus       306 --~~~s~d~~~la~~~  319 (321)
                        +++++||++|+++.
T Consensus       310 ~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          310 TSLAWSADGQTLFAGY  325 (340)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEe
Confidence              47788999998864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-23  Score=190.37  Aligned_cols=230  Identities=7%  Similarity=0.022  Sum_probs=179.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...|...|++++|+|+|++|++|+.++ |+|||+.+.+......  +...+..++++++++.+++++...  ...++.|+
T Consensus        70 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~--~~~~g~i~  145 (369)
T 3zwl_B           70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNV--MKNPGSIN  145 (369)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCB--TTBCCEEE
T ss_pred             hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCc--cCCCCEEE
Confidence            356888999999999999999998866 8899999988776666  478899999999999988887220  00238999


Q ss_pred             EEeCCCCcEE-----------EEEe-eCC--ceeEEEEeCC--eEEEEE-CCEEEEEEcCC-cEEEEEEeccCCCCceEE
Q 020784          160 IWDDHQSRCI-----------GELS-FRS--EVRSVKLRRD--RIIVVL-EQKIFVYNFAD-LKLLHQIETIANPKGLCA  221 (321)
Q Consensus       160 iWD~~~~~~~-----------~~~~-~~~--~v~~v~~~~~--~~~~~~-~~~I~iwd~~~-~~~~~~l~~~~~~~~~~~  221 (321)
                      +||+..+...           ..+. +..  .+.+++|+++  .++++. ++.|++||+++ .+.+..+..|...+..++
T Consensus       146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  225 (369)
T 3zwl_B          146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ  225 (369)
T ss_dssp             EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE
Confidence            9998765321           1111 222  7888999875  455554 47999999988 788888988876655555


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC--------------cEEEEEE
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--------------TLVRIFN  287 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg--------------t~IrIWd  287 (321)
                      +++  ++.+|+ +|+.||.|++||+.+........|...+.+++|+|+++++++++.++              . |++||
T Consensus       226 ~~~--~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~d  301 (369)
T 3zwl_B          226 FSP--DLTYFI-TSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-ARFYH  301 (369)
T ss_dssp             ECT--TSSEEE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-EEEEE
T ss_pred             ECC--CCCEEE-EecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-eEEEe
Confidence            555  557777 48899999999998876554344889999999999999999999998              7 99999


Q ss_pred             cCCCcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          288 TLDGTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       288 ~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      +.+++++..+. ++...+  +.+++++++|+++.
T Consensus       302 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~  334 (369)
T 3zwl_B          302 KIFEEEIGRVQ-GHFGPLNTVAISPQGTSYASGG  334 (369)
T ss_dssp             TTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCcchhhee-cccCcEEEEEECCCCCEEEEEc
Confidence            99999999885 444333  47778999998864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=1.1e-23  Score=196.75  Aligned_cols=221  Identities=16%  Similarity=0.125  Sum_probs=178.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      .++.|+|+++ .+||+|.++.|+|||..+++......+. |...|.+++|+++++.+++++       .|++|+|||+++
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs-------~Dg~v~iWd~~~  178 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQ  178 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSCEEEEETTT
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE-------CCCeEEEEEcCC
Confidence            3567999986 5899999999999999999876555542 456799999999999999888       689999999999


Q ss_pred             CcEEEEEeeC-CceeEEEEeCCeEEEEEC-CEEEEEEcCC-cEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEE
Q 020784          166 SRCIGELSFR-SEVRSVKLRRDRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (321)
Q Consensus       166 ~~~~~~~~~~-~~v~~v~~~~~~~~~~~~-~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~  242 (321)
                      ++.+..+..+ ..+.++.+++..++.+.. +.+++||... ...+.++..|...+  +.+...+++.+++ +|+.||.|+
T Consensus       179 ~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~--~~~~~~~~g~~l~-s~~~D~~v~  255 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAPDGRHLA-SGGNDNLVN  255 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE--EEEEECTTSSEEE-EEETTSCEE
T ss_pred             CcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce--eeeeecCCCCeee-eeeccccce
Confidence            9998888765 478899999988888764 6999999865 55667777776654  4444555668888 599999999


Q ss_pred             EEeeCCcc-----eEEeeccccceeEEEECCCC-CEEEE--EeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCce
Q 020784          243 VEHYASKR-----TKFIMAHDSRIACFALTQDG-QLLAT--SSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAW  314 (321)
Q Consensus       243 i~d~~~~~-----~~~l~~H~~~V~~vafspdg-~~las--~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~  314 (321)
                      +|+...+.     +..+..|...|.+++|+|++ .+|++  |+.|++ |+|||+.+|+++..+..........+++++.+
T Consensus       256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~  334 (420)
T 4gga_A          256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDAHSQVCSILWSPHYKE  334 (420)
T ss_dssp             EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEECSSCEEEEEEETTTTE
T ss_pred             EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeeccccceeeeeecCCCCe
Confidence            99987542     45778899999999999975 55655  458999 99999999999999987666666788889988


Q ss_pred             EEEee
Q 020784          315 LRVLR  319 (321)
Q Consensus       315 la~~~  319 (321)
                      |+++.
T Consensus       335 lv~~s  339 (420)
T 4gga_A          335 LISGH  339 (420)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=2.3e-23  Score=195.68  Aligned_cols=218  Identities=15%  Similarity=0.183  Sum_probs=178.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...|.+++|+  +.+|++|+.++ |++||+.+++....... |.+.+.++.+  +++.+++++       .|++|++
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~s~s-------~dg~i~~  223 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHL--HEKRVVSGS-------RDATLRV  223 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEE--ETTEEEEEE-------TTSEEEE
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEe--cCCEEEEEe-------CCCEEEE
Confidence            5688899999998  66888888755 88999999887665553 5677777665  567777777       6799999


Q ss_pred             EeCCCCcEEEEEeeC-CceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      ||+.+++.+..+..+ ..|.++.++++.++++. ++.|++||+++++.+.++..|...+..++  +  ++..++ +|+.|
T Consensus       224 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~-~~~~d  298 (445)
T 2ovr_B          224 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--F--DGIHVV-SGSLD  298 (445)
T ss_dssp             EESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--E--CSSEEE-EEETT
T ss_pred             EECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE--E--CCCEEE-EEeCC
Confidence            999999988887654 57999999888888876 46999999999999999988766544444  4  346676 48999


Q ss_pred             CcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC--CCcceeEEEeecCceE
Q 020784          239 GQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC--PSISAQSGLWLSSAWL  315 (321)
Q Consensus       239 g~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~--g~~~~~~~~s~d~~~l  315 (321)
                      |.|++||+.++. +..+.+|...|.+++++  +.+|++|+.||+ |+|||+++++++.++..  ++...+.++.+++.+|
T Consensus       299 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  375 (445)
T 2ovr_B          299 TSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV  375 (445)
T ss_dssp             SCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE
T ss_pred             CeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEE
Confidence            999999998765 66899999999999884  679999999999 99999999999999864  2556677888899999


Q ss_pred             EEee
Q 020784          316 RVLR  319 (321)
Q Consensus       316 a~~~  319 (321)
                      +++.
T Consensus       376 ~s~~  379 (445)
T 2ovr_B          376 ITSS  379 (445)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.3e-24  Score=200.53  Aligned_cols=206  Identities=13%  Similarity=0.175  Sum_probs=155.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEec---CCceeEEee--------ee---cCCceEEEEE--ecCCCeEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD---PFREIFRRD--------FE---RGGGIGVVEM--LFRCNILALV  145 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~---~~~~~~~~~--------~~---~~~~v~~v~~--~~~~~~~~~~  145 (321)
                      .|...|++++|+|++++|++|+.++ |+|||++   .++......        +.   +...+..+.+  .++++.++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            5788999999999999999999866 8899985   443322211        10   1234444443  2456677776


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEee---CCceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEe-ccCCCCc
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSF---RSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIE-TIANPKG  218 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~---~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~-~~~~~~~  218 (321)
                      +       .|++|++||+++++.+..+..   ...|.+++|+++.  +++++ ++.|++||+++++.++++. .+...+.
T Consensus       189 ~-------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          189 T-------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT  261 (437)
T ss_dssp             E-------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred             e-------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence            6       679999999999999888875   4689999998754  55555 4699999999999999886 4544444


Q ss_pred             eEEEee--CCCceEEEeecCCCCcEEEEeeCCcc-eEEeec--------------------------cccceeEEEECCC
Q 020784          219 LCAVSQ--GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--------------------------HDSRIACFALTQD  269 (321)
Q Consensus       219 ~~~~s~--~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~--------------------------H~~~V~~vafspd  269 (321)
                      .+++++  .+++.+++ +|+.||.|++||+..+. +..+.+                          |...|++++|+ +
T Consensus       262 ~~~~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~  339 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVV-GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N  339 (437)
T ss_dssp             EEEECTTTCTTEEEEE-EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred             EEEeccccCCCccEEE-EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence            554443  35677887 59999999999997654 344442                          66779999999 7


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          270 GQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       270 g~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      +++|++|+.||+ |+|||+.+++++..+.
T Consensus       340 ~~~l~s~~~d~~-i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          340 DKILLTDEATSS-IVMFSLNELSSSKAVI  367 (437)
T ss_dssp             TEEEEEEGGGTE-EEEEETTCGGGCEEEE
T ss_pred             ceEEEecCCCCe-EEEEECCCcccceEEe
Confidence            899999999999 9999999999888775

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.8e-25  Score=215.31  Aligned_cols=196  Identities=10%  Similarity=0.046  Sum_probs=149.0

Q ss_pred             CCCCCeEEEEEcCC------CCEEEEEcCCc-EEEEEecCCcee-----------EEeeeecCCceEEEEEecCCCeEEE
Q 020784           83 SPPPTLLHISFNQD------HGCFAAGTDHG-FRIYNCDPFREI-----------FRRDFERGGGIGVVEMLFRCNILAL  144 (321)
Q Consensus        83 ~~~~~V~~v~fs~d------g~~lasg~~~g-v~vw~~~~~~~~-----------~~~~~~~~~~v~~v~~~~~~~~~~~  144 (321)
                      .|.+.|++|+|+|+      +.+||+|+.|+ |+|||+...+..           ..... |.+.+.+++++++ ..+++
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~~-~~las  282 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLSP-TTVVC  282 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESSS-SEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecCC-CeEEE
Confidence            35578999999997      57999998765 899999765321           12222 5678889888764 46666


Q ss_pred             EeCCCCCCCCCCcEEEEeCCCCc-EEEEEee-CCceeEE--EEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEeccCC-
Q 020784          145 VGGGPDPQYPLNKVMIWDDHQSR-CIGELSF-RSEVRSV--KLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIAN-  215 (321)
Q Consensus       145 ~sg~~~~~~~d~~v~iWD~~~~~-~~~~~~~-~~~v~~v--~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~-  215 (321)
                      ++       .|++|++||++++. ....+.. ...|.+|  .+.++   .++.++ |++|++||+++++.+.++.+|.. 
T Consensus       283 gs-------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          283 GF-------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             EE-------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             Ee-------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            66       68999999999764 3344544 4589998  45654   345554 57999999998887777776643 


Q ss_pred             -CCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       216 -~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                       .+..++++++  +..++ +|+.|++|++||..... +.++.+|.+.|++|+|+|+|++|||||.||+ |+|||+..+
T Consensus       356 ~~v~~v~fsp~--~~~l~-s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~  429 (524)
T 2j04_B          356 SNLVPVVYCPQ--IYSYI-YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARR  429 (524)
T ss_dssp             CSCCCEEEETT--TTEEE-EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSS
T ss_pred             CcccceEeCCC--cCeEE-EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHh
Confidence             2445666664  46676 48889999999988755 5788999999999999999999999999999 999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.4e-23  Score=183.79  Aligned_cols=216  Identities=12%  Similarity=0.159  Sum_probs=164.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc---eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|...|++++|+|++++|++|+.++ +++|++....   ....... |...+..+.+  +++.+++++       .|+.
T Consensus        56 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~l~~~~-------~d~~  125 (313)
T 3odt_A           56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSF--QDGVVISGS-------WDKT  125 (313)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEE--ETTEEEEEE-------TTSE
T ss_pred             ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEe--cCCEEEEEe-------CCCC
Confidence            45678999999999999999998866 7899986542   2222322 5677777766  677888777       6799


Q ss_pred             EEEEeCCCCcEEEEEee-CCceeEEEEeC---CeEEEEE-CCEEEEEEcCCcEEEEEEec-cCCCCceEEEeeCCCceEE
Q 020784          158 VMIWDDHQSRCIGELSF-RSEVRSVKLRR---DRIIVVL-EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~-~~~v~~v~~~~---~~~~~~~-~~~I~iwd~~~~~~~~~l~~-~~~~~~~~~~s~~~d~~~l  231 (321)
                      |++||  .++.+..+.. ...+.++.+.+   +.++++. ++.|++||  ..+.+..+.. +...+..+++++++  . +
T Consensus       126 i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~--~-~  198 (313)
T 3odt_A          126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG--H-F  198 (313)
T ss_dssp             EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETT--E-E
T ss_pred             EEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCC--e-E
Confidence            99999  5566666654 45788888854   4566665 46999999  4566677776 65666666666654  5 5


Q ss_pred             EeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc-ceeEEEe
Q 020784          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI-SAQSGLW  309 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~-~~~~~~s  309 (321)
                      + +|+.||.|++||+..+. +..+.+|...|++++|+|+| +|++++.||+ |+|||+++++++.++..... ...+.++
T Consensus       199 ~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~i~~~~~~  275 (313)
T 3odt_A          199 I-SCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITLPAISIWSVDCM  275 (313)
T ss_dssp             E-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEECSSSCEEEEEEC
T ss_pred             E-EccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEeccCceEEEEEEc
Confidence            5 48999999999998655 66889999999999999999 5889999999 99999999999999864432 2345777


Q ss_pred             ecCceEEE
Q 020784          310 LSSAWLRV  317 (321)
Q Consensus       310 ~d~~~la~  317 (321)
                      +++++++.
T Consensus       276 ~~~~~~~~  283 (313)
T 3odt_A          276 SNGDIIVG  283 (313)
T ss_dssp             TTSCEEEE
T ss_pred             cCCCEEEE
Confidence            88886653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=196.56  Aligned_cols=202  Identities=11%  Similarity=0.107  Sum_probs=153.1

Q ss_pred             cCCCCCCeEEEE------EcCCCCEEEEEcCCc-EEEEEecCCc-eeEEeeeecCC----ceEEEE----EecCCCeEEE
Q 020784           81 SSSPPPTLLHIS------FNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGG----GIGVVE----MLFRCNILAL  144 (321)
Q Consensus        81 ~~~~~~~V~~v~------fs~dg~~lasg~~~g-v~vw~~~~~~-~~~~~~~~~~~----~v~~v~----~~~~~~~~~~  144 (321)
                      ...|...|+++.      |++++++|++|+.++ +++||+.+.+ ....... +.+    .+..+.    ++++++.+++
T Consensus       107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~  185 (357)
T 3i2n_A          107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-VQGENKRDCWTVAFGNAYNQEERVVCA  185 (357)
T ss_dssp             ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-CTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred             EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-cCCCCCCceEEEEEEeccCCCCCEEEE
Confidence            356888999995      578999999998865 8899998776 3333332 222    566666    4567888887


Q ss_pred             EeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeC-----CeEEEEE-CCEEEEEEcCCcEEEEEEe-----cc
Q 020784          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-----DRIIVVL-EQKIFVYNFADLKLLHQIE-----TI  213 (321)
Q Consensus       145 ~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-----~~~~~~~-~~~I~iwd~~~~~~~~~l~-----~~  213 (321)
                      ++       .|+.|++||+++++......+...|.+++|++     +.++++. ++.|++||+++++.+..+.     .|
T Consensus       186 ~~-------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  258 (357)
T 3i2n_A          186 GY-------DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH  258 (357)
T ss_dssp             EE-------TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             Ec-------cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence            77       67999999999999877777788999999986     3455555 5799999998766655554     66


Q ss_pred             CCCCceEEEeeCCCce-EEEeecCCCCcEEEEeeCC--------------------cceEEeeccccceeEEEECCCCCE
Q 020784          214 ANPKGLCAVSQGVGSL-VLVCPGLQKGQVRVEHYAS--------------------KRTKFIMAHDSRIACFALTQDGQL  272 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~-~la~sGs~dg~V~i~d~~~--------------------~~~~~l~~H~~~V~~vafspdg~~  272 (321)
                      ...+..+++++  ++. +++ +|+.||.|++||+..                    ..+..+.+|...|++++|+|+|++
T Consensus       259 ~~~v~~~~~~~--~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          259 KSTVWQVRHLP--QNRELFL-TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             SSCEEEEEEET--TEEEEEE-EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             cCCEEEEEECC--CCCcEEE-EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence            66555555554  556 566 599999999999864                    235678899999999999999999


Q ss_pred             EE-EEeCCCcEEEEEEcCCCcEE
Q 020784          273 LA-TSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       273 la-s~S~Dgt~IrIWd~~tg~~i  294 (321)
                      || |++.||+ |+|||+.+++++
T Consensus       336 l~~s~~~d~~-i~iw~~~~~~~i  357 (357)
T 3i2n_A          336 LCVCSSFDQT-VRVLIVTKLNKI  357 (357)
T ss_dssp             EEEEEETTSE-EEEEEECC----
T ss_pred             EEEEecCCCc-EEEEECCCcccC
Confidence            98 8999999 999999987653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=202.95  Aligned_cols=199  Identities=9%  Similarity=0.076  Sum_probs=147.9

Q ss_pred             CCeEEEEEcCCC--CEEEEEcCCc-EEEEEecCCceeE---------------------------------------Eee
Q 020784           86 PTLLHISFNQDH--GCFAAGTDHG-FRIYNCDPFREIF---------------------------------------RRD  123 (321)
Q Consensus        86 ~~V~~v~fs~dg--~~lasg~~~g-v~vw~~~~~~~~~---------------------------------------~~~  123 (321)
                      ..|++++|+|++  .+|++|+.++ |+||++.......                                       ...
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            789999999998  7888887755 8899987643210                                       111


Q ss_pred             eecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC-CcEEEEE--------eeCCceeEEEEeCCe---EEEE
Q 020784          124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGEL--------SFRSEVRSVKLRRDR---IIVV  191 (321)
Q Consensus       124 ~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~-~~~~~~~--------~~~~~v~~v~~~~~~---~~~~  191 (321)
                      ..|...|..++++++++.++++        .|++|++||+++ ++.+..+        .+...|.+++|+++.   ++++
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA--------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE--------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe--------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence            1267889999999999888764        269999999984 4444433        234579999999863   5555


Q ss_pred             E-CCEEEEEEcCCcEE----EEEEeccCCC----------CceEEEeeCCCceEEEeecCCCCcEEEEeeCC-c-ceEEe
Q 020784          192 L-EQKIFVYNFADLKL----LHQIETIANP----------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K-RTKFI  254 (321)
Q Consensus       192 ~-~~~I~iwd~~~~~~----~~~l~~~~~~----------~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~-~-~~~~l  254 (321)
                      + ++.|++||+++++.    ++.+..+..+          ..+.++.+.+++.+|++ |+. |.|++||+.. + .+..+
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~-~~v~iwd~~~~~~~~~~~  323 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT-RDY-LSVKVWDLNMENRPVETY  323 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE-EES-SEEEEEETTCCSSCSCCE
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE-eeC-CeEEEEeCCCCcccccee
Confidence            5 46999999998876    6778776541          13444555556788884 676 9999999975 3 46688


Q ss_pred             eccccc---------------eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 020784          255 MAHDSR---------------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (321)
Q Consensus       255 ~~H~~~---------------V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~  295 (321)
                      .+|...               +..++|+|+|++||+|+.||+ |+|||+.+++.+.
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~-v~iwd~~~~~~~~  378 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF-FRMFDRNTKRDIT  378 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE-EEEEETTTCCEEE
T ss_pred             eccccccccccccccccccccceEEEECCCCCEEEEeccCCE-EEEEEcCCCccee
Confidence            888643               334999999999999999999 9999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=3.6e-25  Score=232.41  Aligned_cols=223  Identities=16%  Similarity=0.203  Sum_probs=185.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      +...|.+++|+|+|+++++|+.+| +++|++.+++....... |.+.+..++++++++.+++++       .|++|++||
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~-------~dg~i~vwd 1031 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG-HKKAVRHIQFTADGKTLISSS-------EDSVIQVWN 1031 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-CSSCCCCEEECSSSSCEEEEC-------SSSBEEEEE
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc-CCCceEEEEECCCCCEEEEEc-------CCCEEEEEE
Confidence            346899999999999999999866 88999998877655544 678899999999999998887       679999999


Q ss_pred             CCCCcEEEEEeeCCceeEEEEeCCeEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      +.+++......+...|.++.++++..+++  .++.|++||+.+++.+..+..|...+..++++++  +.+++ +|+.||.
T Consensus      1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~-s~s~d~~ 1108 (1249)
T 3sfz_A         1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD--ATKFS-STSADKT 1108 (1249)
T ss_dssp             TTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS--SSSCE-EECCSSC
T ss_pred             CCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCC--CCEEE-EEcCCCc
Confidence            99998876666677899999988654433  3579999999999999999998888877887765  46777 4899999


Q ss_pred             EEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE--------eCCCc--ceeEEEe
Q 020784          241 VRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE--------CCPSI--SAQSGLW  309 (321)
Q Consensus       241 V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~--------~~g~~--~~~~~~s  309 (321)
                      |++||+.+.. +..+.+|.+.|++++|+|+|++||+|+.||+ |+|||+.+|+++.++        ..++.  ...++|+
T Consensus      1109 v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 1187 (1249)
T 3sfz_A         1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187 (1249)
T ss_dssp             CCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSSSCCCCCCCCCC-------CCSCCCEEEEC
T ss_pred             EEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceEEEeccccccccccccCceEEEEEEC
Confidence            9999988655 6689999999999999999999999999999 999999999987654        12233  4456889


Q ss_pred             ecCceEEEe
Q 020784          310 LSSAWLRVL  318 (321)
Q Consensus       310 ~d~~~la~~  318 (321)
                      +||++|+++
T Consensus      1188 ~dg~~l~s~ 1196 (1249)
T 3sfz_A         1188 PDSKTLVSA 1196 (1249)
T ss_dssp             TTSSCEEEE
T ss_pred             CCCCEEEEC
Confidence            999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.4e-23  Score=191.14  Aligned_cols=204  Identities=11%  Similarity=0.017  Sum_probs=155.3

Q ss_pred             CCCCCCeEEEEEcCC--CCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecC--CCeEEEEeCCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d--g~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~d  155 (321)
                      ..|...|++++|+++  +++|++|+.++ |+|||+.+.+......+. |...+..++++++  ++.+++++       .|
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~d  124 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-------SD  124 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TT
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec-------CC
Confidence            467889999999987  99999999865 889999988633233222 6788999999998  88888887       67


Q ss_pred             CcEEEEeCCCCcE--EEEE-eeCCceeEEEEeC---------------CeEEEEE-CCEEEEEEcCCc----EEEEEEec
Q 020784          156 NKVMIWDDHQSRC--IGEL-SFRSEVRSVKLRR---------------DRIIVVL-EQKIFVYNFADL----KLLHQIET  212 (321)
Q Consensus       156 ~~v~iWD~~~~~~--~~~~-~~~~~v~~v~~~~---------------~~~~~~~-~~~I~iwd~~~~----~~~~~l~~  212 (321)
                      +.|++||++++..  ...+ .+...|.+++|++               ..++++. ++.|++||++++    ..+..+..
T Consensus       125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  204 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  204 (379)
T ss_dssp             SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence            9999999988743  2233 3445899999987               2355554 579999999654    35566777


Q ss_pred             cCCCCceEEEeeCCC-ceEEEeecCCCCcEEEEeeCCcc----eE--EeeccccceeEEEECCCCCEEEEEeCCCcEEEE
Q 020784          213 IANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR----TK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (321)
Q Consensus       213 ~~~~~~~~~~s~~~d-~~~la~sGs~dg~V~i~d~~~~~----~~--~l~~H~~~V~~vafspdg~~las~S~Dgt~IrI  285 (321)
                      |...+..++++++.. +.+|+ +|+.||.|++||+....    ..  ....|...|++++|+|+|++||+++.||. |+|
T Consensus       205 h~~~v~~~~~sp~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~i  282 (379)
T 3jrp_A          205 HSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VTL  282 (379)
T ss_dssp             CSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS-EEE
T ss_pred             ccCcEeEEEECCCCCCCCeEE-EEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc-EEE
Confidence            766655566655410 57777 58999999999998752    22  23448999999999999999999999999 999


Q ss_pred             EEcCCCcEE
Q 020784          286 FNTLDGTLL  294 (321)
Q Consensus       286 Wd~~tg~~i  294 (321)
                      ||+.++...
T Consensus       283 w~~~~~~~~  291 (379)
T 3jrp_A          283 WKENLEGKW  291 (379)
T ss_dssp             EEEEETTEE
T ss_pred             EeCCCCCcc
Confidence            999865433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=1.3e-22  Score=186.62  Aligned_cols=221  Identities=10%  Similarity=0.050  Sum_probs=177.5

Q ss_pred             CCeEEEEEcCCCCEE-EEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCF-AAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~l-asg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+.+++|+|||++| ++++. +.+++||+.+++.......  .+.+..++++++++.+++++.      .+++|++||+
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~------~~~~v~v~d~  103 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDT  103 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET------TTTEEEEEET
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEEC------CCCEEEEEEC
Confidence            468999999999977 56654 5688999999887666654  568899999999998877653      3589999999


Q ss_pred             CCCcEEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          164 HQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      .+++.+..+..+..+.+++|+++  .++++.  ++.|++||+.+++.+..+..+..+   ..+..++++..++++++.+|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP---KGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE---EEEEECTTSSEEEEEETTTT
T ss_pred             CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc---ceEEECCCCCEEEEEeCCCC
Confidence            99999888888888999999876  454443  469999999999999888776433   34444556666644688899


Q ss_pred             cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEe---CCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S---~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      .|++||..++.......|...+.+++|+|+|++|++++   .|+. |++||+.+++++..+..+.....+.+++++++|.
T Consensus       181 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  259 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY  259 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred             EEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEecCCCccEEEEccCCCEEE
Confidence            99999998877655555777899999999999999888   6888 9999999999999997766655678889999886


Q ss_pred             Ee
Q 020784          317 VL  318 (321)
Q Consensus       317 ~~  318 (321)
                      ++
T Consensus       260 ~s  261 (391)
T 1l0q_A          260 VA  261 (391)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=6.9e-24  Score=193.09  Aligned_cols=197  Identities=9%  Similarity=-0.026  Sum_probs=157.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeee-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|...|++++|+|+|++|++|+.++ +++||+.+.+....... .|...+..++++++++.+++++       .|+.|+
T Consensus        49 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~v~  121 (372)
T 1k8k_C           49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-------GSRVIS  121 (372)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-------TTSSEE
T ss_pred             cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-------CCCEEE
Confidence            35778999999999999999998865 88999988875444332 2577899999999999998888       679999


Q ss_pred             EEeCCCCcE---EEEEe--eCCceeEEEEeCC--eEEEEE-CCEEEEEEc------------------CCcEEEEEEecc
Q 020784          160 IWDDHQSRC---IGELS--FRSEVRSVKLRRD--RIIVVL-EQKIFVYNF------------------ADLKLLHQIETI  213 (321)
Q Consensus       160 iWD~~~~~~---~~~~~--~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~------------------~~~~~~~~l~~~  213 (321)
                      +||++.+..   ...+.  +...|.+++|+++  .++++. ++.|++||+                  ..++.+..+..|
T Consensus       122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
T 1k8k_C          122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  201 (372)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             EEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence            999987762   22332  3457999999875  455554 579999995                  367888888877


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      ...+..+++++  ++.+|+ +|+.||.|++||+..+. +..+..|...|++++|+|+|.+|++| .|+. |+||++.+
T Consensus       202 ~~~v~~~~~~~--~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~  274 (372)
T 1k8k_C          202 CGWVHGVCFSA--NGSRVA-WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDS  274 (372)
T ss_dssp             SSCEEEEEECS--SSSEEE-EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEET
T ss_pred             CCeEEEEEECC--CCCEEE-EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccC
Confidence            66555555554  557777 48999999999997654 67899999999999999999999988 7999 99999988

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=4.9e-24  Score=197.87  Aligned_cols=226  Identities=12%  Similarity=0.027  Sum_probs=144.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeee----ecCCceEEEEEec--------CCCeEEEEeCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDF----ERGGGIGVVEMLF--------RCNILALVGGGPD  150 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~----~~~~~v~~v~~~~--------~~~~~~~~sg~~~  150 (321)
                      +...+....+.+++++||+|+.| +|+|||+++........+    .|.+.|..+++++        ++..+++++    
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s----  163 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG----  163 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE----
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE----
Confidence            44456666777888999999875 599999998865433222    1778899999986        567788777    


Q ss_pred             CCCCCCcEEEEeCCCCcEE-EEEeeCCceeEEEEeCCe---EEEEE-CCEEEEEEcCCcEEEEEEe--------------
Q 020784          151 PQYPLNKVMIWDDHQSRCI-GELSFRSEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIE--------------  211 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~-~~~~~~~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~~~~~l~--------------  211 (321)
                         .|++|||||+.++..+ ..+.++..|.+++|+++.   ++++. +++|++||+++++....+.              
T Consensus       164 ---~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          164 ---DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             ---TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             ---CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence               7899999999877654 455677899999999863   44444 5799999998776544432              


Q ss_pred             -----------ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECC-----------
Q 020784          212 -----------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ-----------  268 (321)
Q Consensus       212 -----------~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafsp-----------  268 (321)
                                 ++...+..+.++ .+|+..++ +++.|+.+++||+.... ...+..|...+..+.+.|           
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~-s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  318 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWI-GSDGSGIL-AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL  318 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEE-TTTTCEEE-EECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred             cccceeeeecccccccceeeeee-cCCCCEEE-EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence                       222233344443 24567777 58999999999987654 335555555554444433           


Q ss_pred             ---------CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc-ceeEEEeecCceEEEee
Q 020784          269 ---------DGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI-SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       269 ---------dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~-~~~~~~s~d~~~la~~~  319 (321)
                               ++.++++|+.||+ |+|||+.+++++..+...+. ...++|++||++||+++
T Consensus       319 ~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          319 LGACPHPRYMDYFATAHSQHGL-IQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             SCCEECSSCTTEEEEEETTTTE-EEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             eeEEEccCCCCEEEEEECCCCE-EEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence                     3457788999999 99999999998877654333 33458899999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=4e-23  Score=200.30  Aligned_cols=228  Identities=16%  Similarity=0.217  Sum_probs=175.0

Q ss_pred             CCCCCC-eEEEEEcC--CCCEEEEEcCCc-EEEEEecCC------ceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCC
Q 020784           82 SSPPPT-LLHISFNQ--DHGCFAAGTDHG-FRIYNCDPF------REIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        82 ~~~~~~-V~~v~fs~--dg~~lasg~~~g-v~vw~~~~~------~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      ..|... |++++|+|  ||++||+|+.++ |+|||+.++      .......+. |.+.+..++++++++.+++++.+.+
T Consensus        60 ~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  139 (615)
T 1pgu_A           60 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD  139 (615)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC
Confidence            567788 99999999  999999999865 889999755      222222222 6788999999999999988884321


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe---EEEEE-CCEEEEEEcCCcEEEEEEeccCC---CCceEEE
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIETIAN---PKGLCAV  222 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~~~~~l~~~~~---~~~~~~~  222 (321)
                         ..+.|++||  .++.+..+..+ ..|.++.|+++.   ++++. ++.|++||+.+++.+.++..|..   .+..+++
T Consensus       140 ---~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  214 (615)
T 1pgu_A          140 ---NFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  214 (615)
T ss_dssp             ---CSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             ---CccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE
Confidence               126788888  55666666544 479999999873   55554 47999999999999999998876   5555555


Q ss_pred             eeCCC-ceEEEeecCCCCcEEEEeeCCcc-eEEe-e---ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 020784          223 SQGVG-SLVLVCPGLQKGQVRVEHYASKR-TKFI-M---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (321)
Q Consensus       223 s~~~d-~~~la~sGs~dg~V~i~d~~~~~-~~~l-~---~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~  296 (321)
                      ++  + +.+++ +|+.||.|++||+.++. +..+ .   +|...|++++|+ ++.+|++++.||+ |+|||+++++++.+
T Consensus       215 ~~--~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          215 SP--DSGEFVI-TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT-IRVWDVTTSKCVQK  289 (615)
T ss_dssp             CS--TTCCEEE-EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE-EEEEETTTTEEEEE
T ss_pred             CC--CCCCEEE-EEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc-EEEEECCCCcEEEE
Confidence            54  5 57777 48899999999988765 4566 5   899999999999 9999999999999 99999999999999


Q ss_pred             EeCCC---cceeE-EEeecCceEEEee
Q 020784          297 ECCPS---ISAQS-GLWLSSAWLRVLR  319 (321)
Q Consensus       297 ~~~g~---~~~~~-~~s~d~~~la~~~  319 (321)
                      +....   ..... ....++.+|+++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~l~~~~  316 (615)
T 1pgu_A          290 WTLDKQQLGNQQVGVVATGNGRIISLS  316 (615)
T ss_dssp             EECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             EcCCCCcccCceeEEEeCCCCeEEEEE
Confidence            87541   12222 2234788877653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=7.7e-24  Score=198.63  Aligned_cols=225  Identities=11%  Similarity=0.086  Sum_probs=168.5

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEecC----------CceeEEeeeecCCceEEEEEecCCC-eEEEEeCC
Q 020784           82 SSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDP----------FREIFRRDFERGGGIGVVEMLFRCN-ILALVGGG  148 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasg~~~g-v~vw~~~~----------~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~sg~  148 (321)
                      ..|.+.|++++|+|+ +.+||+|+.+| |+||++.+          ......... |.+.+..++|++++. .+++++  
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~--  201 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSAS--  201 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEEC--
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEe--
Confidence            467789999999997 78999998865 88999976          344444443 678899999998887 666665  


Q ss_pred             CCCCCCCCcEEEEeCCCCc----E---EEEE-eeCCceeEEEEeC---CeEEEEE-CCEEEEEEcCCc---EEEEEEecc
Q 020784          149 PDPQYPLNKVMIWDDHQSR----C---IGEL-SFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADL---KLLHQIETI  213 (321)
Q Consensus       149 ~~~~~~d~~v~iWD~~~~~----~---~~~~-~~~~~v~~v~~~~---~~~~~~~-~~~I~iwd~~~~---~~~~~l~~~  213 (321)
                           .|++|++||+..+.    .   ...+ .+...|.+++|++   ..++++. ++.|++||++++   +.+..+..|
T Consensus       202 -----~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          202 -----DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             -----TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             -----CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence                 67999999998732    1   2233 3345799999986   2455554 579999999876   567777777


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--cceEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCC
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~t  290 (321)
                      ...+..+++++++. .+++ +|+.||.|++||+..  ..+..+.+|...|++|+|+|++. +||+++.||+ |+|||+.+
T Consensus       277 ~~~v~~i~~~p~~~-~~l~-tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~  353 (430)
T 2xyi_A          277 TAEVNCLSFNPYSE-FILA-TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSK  353 (430)
T ss_dssp             SSCEEEEEECSSCT-TEEE-EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGG
T ss_pred             CCCeEEEEeCCCCC-CEEE-EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCC
Confidence            76666666665432 2455 589999999999986  34778999999999999999985 7999999999 99999987


Q ss_pred             --------------CcEEEEEeCCCcce--eEEEeecCc-eEEEe
Q 020784          291 --------------GTLLQEECCPSISA--QSGLWLSSA-WLRVL  318 (321)
Q Consensus       291 --------------g~~i~~~~~g~~~~--~~~~s~d~~-~la~~  318 (321)
                                    .+++..+ .+|...  .+++++++. +|+.+
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~  397 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSV  397 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEE
T ss_pred             CccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEE
Confidence                          3566655 455543  446677777 45443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=9.1e-24  Score=201.69  Aligned_cols=218  Identities=8%  Similarity=0.038  Sum_probs=163.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCC-----ceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGG-----GIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      .|...|++|+|||||++||+++.+| |+||+.+.  ......  |..     .+..++|+++++.+++++       .||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs-------~DG  151 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGN-------EDG  151 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEE-------TTS
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEc-------CCC
Confidence            4467899999999999999999866 88999544  222222  232     599999999999999998       789


Q ss_pred             cEEEEeCCCCc-------EEEEEeeC-----CceeEEEEeCCeEEEEE-CCEEEEEEcCCcE---EEEEEe-ccCCCCce
Q 020784          157 KVMIWDDHQSR-------CIGELSFR-----SEVRSVKLRRDRIIVVL-EQKIFVYNFADLK---LLHQIE-TIANPKGL  219 (321)
Q Consensus       157 ~v~iWD~~~~~-------~~~~~~~~-----~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~---~~~~l~-~~~~~~~~  219 (321)
                      +|+|||++++.       .+.++..+     ..|.+++|+++.+++++ |++|++||+.+.+   ..+++. .|...+..
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            99999999875       35565432     37999999999954444 5699999998766   345674 56667777


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEee-ccccceeEEEE--CCCCCEEEEEeCCCcEEEEEEcCC------
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFAL--TQDGQLLATSSTKGTLVRIFNTLD------  290 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~-~H~~~V~~vaf--spdg~~las~S~Dgt~IrIWd~~t------  290 (321)
                      ++|+  +  ..+|+ ++ +|+|++|+..++....+. +|.+.|+.|+|  +||+..|+++++||+  |||.+..      
T Consensus       232 vaFs--g--~~LAS-a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~~~~spd  303 (588)
T 2j04_A          232 LKIV--D--YKVVL-TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDELHVTAD  303 (588)
T ss_dssp             EEEE--T--TEEEE-EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSSEEEECC
T ss_pred             EEEE--C--CEEEE-Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeeccEEECCC
Confidence            8887  2  56664 44 589999999888775555 99999999999  999999999999987  8888631      


Q ss_pred             -----------------CcEEEEEeCCCc-ceeEEEeecCceEEEeec
Q 020784          291 -----------------GTLLQEECCPSI-SAQSGLWLSSAWLRVLRT  320 (321)
Q Consensus       291 -----------------g~~i~~~~~g~~-~~~~~~s~d~~~la~~~~  320 (321)
                                       |..+..++ +.. ...+++++||+.||++..
T Consensus       304 ~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          304 NIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             CSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred             ceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence                             11122221 111 223588999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.5e-23  Score=195.06  Aligned_cols=223  Identities=9%  Similarity=0.027  Sum_probs=167.3

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEcCC-cEEEEEec--CCceeEEeee-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           83 SPPPTLLHISFNQDHGCF-AAGTDH-GFRIYNCD--PFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~l-asg~~~-gv~vw~~~--~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      .|.+.|++++|+|||++| ++|+.+ .|+|||+.  +++....... .|...+..++++++++.+++++       .++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------~~g~  172 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD-------KFGD  172 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------TTSE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe-------CCCc
Confidence            456689999999999996 888765 48899998  6665544432 1467899999999999998887       5799


Q ss_pred             EEEEeCCCCcEEE----EEe-eCCceeEEEEeCC---e--EEEEE-CCEEEEEEcCCcEEEEEE-eccCCCCceEEEeeC
Q 020784          158 VMIWDDHQSRCIG----ELS-FRSEVRSVKLRRD---R--IIVVL-EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQG  225 (321)
Q Consensus       158 v~iWD~~~~~~~~----~~~-~~~~v~~v~~~~~---~--~~~~~-~~~I~iwd~~~~~~~~~l-~~~~~~~~~~~~s~~  225 (321)
                      |++||+.++....    .+. +...|.+++|+++   .  ++++. ++.|++||+.+++.+..+ .+|...+..++|+  
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--  250 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--  250 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--
Confidence            9999998776442    333 4458999999987   3  44444 469999999988887774 4666666666666  


Q ss_pred             CCceEEEeecCCCCcEEEEeeCCcc-eEEeec-------------------------cccceeEEEECCCCCEEEEEe-C
Q 020784          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA-------------------------HDSRIACFALTQDGQLLATSS-T  278 (321)
Q Consensus       226 ~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~-------------------------H~~~V~~vafspdg~~las~S-~  278 (321)
                       ++.+|+ +|+.||.|++||+.++. +..+..                         +...|.+|+|+|++++|++++ .
T Consensus       251 -d~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          251 -KDYLLL-SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             -STTEEE-EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             -CCCEEE-EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence             557777 58999999999998765 445553                         235799999999999999999 7


Q ss_pred             CCcEEEEEEc--CCC---cEEEEEeCCCcceeEEEeecCceEEE
Q 020784          279 KGTLVRIFNT--LDG---TLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       279 Dgt~IrIWd~--~tg---~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                      |++ |+||++  .++   +++.++........+.+++++.++++
T Consensus       329 d~~-i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~  371 (450)
T 2vdu_B          329 TKC-IIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTL  371 (450)
T ss_dssp             CSE-EEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred             CCe-EEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEE
Confidence            888 999999  666   67777765433333455554444544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.7e-24  Score=195.49  Aligned_cols=210  Identities=11%  Similarity=0.032  Sum_probs=151.3

Q ss_pred             EEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC------
Q 020784           92 SFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------  164 (321)
Q Consensus        92 ~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~------  164 (321)
                      .+..|+.+|++|+.|+ |+|||+.+++.+.....   +.+..+.+++.   +++++       .|++|++|+..      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~~~~~---~~s~s-------~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGGEHPA---IISRG-------PCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTCCCCS---EEEEC-------STTEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeeeeCCc---eEEec-------CCCeEEEEEccCceEEe
Confidence            4456888999999866 88999998877655442   33444444433   44444       57999999654      


Q ss_pred             ---CCcEEEEEee--CCceeEEEEeC--C--eEEEEE-CCEEEEEEcCCcEEEEEEecc-CCCCceEEEeeCCCceEEEe
Q 020784          165 ---QSRCIGELSF--RSEVRSVKLRR--D--RIIVVL-EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       165 ---~~~~~~~~~~--~~~v~~v~~~~--~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~-~~~~~~~~~s~~~d~~~la~  233 (321)
                         +++.+..+..  ...|.++++++  +  .++.++ +++|++||+++++.+..+..+ ...+..+++  ++++.++| 
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~--~pdg~~la-  186 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL--HKDSLLLA-  186 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE--CTTSCEEE-
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEE--CCCCCEEE-
Confidence               5555555543  35799999988  4  345454 579999999999887666443 334445555  45668888 


Q ss_pred             ecCCCCcEEEEeeCCcc-e-EEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC--CC-cc---e
Q 020784          234 PGLQKGQVRVEHYASKR-T-KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC--PS-IS---A  304 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~-~~l~~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~--g~-~~---~  304 (321)
                      +|+.||.|++||+.++. + ..+.. |.+.|++|+|+|+|.+||+++ |++ |+|||++++++++++..  .+ ..   .
T Consensus       187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCcceeecccccccccccce
Confidence            59999999999998766 3 57888 999999999999999999999 558 99999999987654431  01 11   2


Q ss_pred             eEEEeecCceEEEee
Q 020784          305 QSGLWLSSAWLRVLR  319 (321)
Q Consensus       305 ~~~~s~d~~~la~~~  319 (321)
                      .++++++|++|+++.
T Consensus       265 ~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYS  279 (343)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEec
Confidence            368889999999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=2e-22  Score=187.82  Aligned_cols=226  Identities=12%  Similarity=0.099  Sum_probs=179.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .|...|.+++|+++|+++++++. +.+++||+++.+....... |...+..+++.++++.+++++.      .+++|++|
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~------~~~~i~~~  239 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNW------ISEDISVI  239 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEec------CCCcEEEE
Confidence            56679999999999999999987 4588999998877655543 5678899999999988866653      36899999


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE---------CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~---------~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      |+++++.+..+.....+.+++|+++  .++++.         ++.|++||+.+++.+..+.... .  ...+..++++..
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-~--~~~~~~~~~g~~  316 (433)
T 3bws_A          240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-N--KRHIVSGNTENK  316 (433)
T ss_dssp             ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE-C--EEEEEECSSTTE
T ss_pred             ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC-C--cceEEECCCCCE
Confidence            9999999888888788999999876  455554         4599999999998877764332 2  333444555554


Q ss_pred             EEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeC---------------CCcEEEEEEcCCCcEEE
Q 020784          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---------------KGTLVRIFNTLDGTLLQ  295 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~---------------Dgt~IrIWd~~tg~~i~  295 (321)
                      ++++++.+|.|++||..++.......|...+.+++|+|+|++|++++.               ||. |++||+.+++++.
T Consensus       317 l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~~  395 (433)
T 3bws_A          317 IYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVKE  395 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcEEE
Confidence            544688999999999987765544458888999999999999888876               468 9999999999999


Q ss_pred             EEeCCCcceeEEEeecCceEEEee
Q 020784          296 EECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       296 ~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      .+..+.....+.+++||++|+++.
T Consensus       396 ~~~~~~~~~~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          396 FWEAGNQPTGLDVSPDNRYLVISD  419 (433)
T ss_dssp             EEECSSSEEEEEECTTSCEEEEEE
T ss_pred             EecCCCCCceEEEcCCCCEEEEEE
Confidence            997665556678899999998763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=1.9e-23  Score=192.05  Aligned_cols=203  Identities=11%  Similarity=0.114  Sum_probs=152.7

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCC---CeEEEEeCCCCCCCCCCc
Q 020784           83 SPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNK  157 (321)
Q Consensus        83 ~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~---~~~~~~sg~~~~~~~d~~  157 (321)
                      .|...|++++|+| ++.+|++|+.++ +++||+.+.+......  +...+..+.+.+..   ..+++++       .++.
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  167 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGT-------RGPK  167 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEE-------SSSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEc-------CCCe
Confidence            4788999999999 778999988755 8899999988766665  37788888887744   3666666       6799


Q ss_pred             EEEEeCCCCcEEEEEee-CCceeEEEEeCCe---EEEEE-CCEEEEEEcCCcE-EEEEE---------------eccCCC
Q 020784          158 VMIWDDHQSRCIGELSF-RSEVRSVKLRRDR---IIVVL-EQKIFVYNFADLK-LLHQI---------------ETIANP  216 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~-~~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~-~~~~l---------------~~~~~~  216 (321)
                      |++||+++++.+..+.. ...|.+++|+++.   ++++. ++.|++||+++++ .+..+               ..|.. 
T Consensus       168 v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  246 (408)
T 4a11_B          168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG-  246 (408)
T ss_dssp             EEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS-
T ss_pred             EEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC-
Confidence            99999999988877764 4589999999864   44454 5799999997654 44444               22333 


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeCCc-----------------------------------------------
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------------------------------------  249 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~-----------------------------------------------  249 (321)
                       .+.++...+++.+++ +|+.||.|++||+...                                               
T Consensus       247 -~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  324 (408)
T 4a11_B          247 -KVNGLCFTSDGLHLL-TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG  324 (408)
T ss_dssp             -CEEEEEECTTSSEEE-EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred             -ceeEEEEcCCCCEEE-EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC
Confidence             344555555668887 4889999999997542                                               


Q ss_pred             -ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          250 -RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       250 -~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                       .+..+.+|...|++++|+|+|++||+|+.||. |+|||+.+++.+....
T Consensus       325 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          325 EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN-ILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             CEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEEECC--------
T ss_pred             cceeeeccCCCeEEEEEEcCCCCEEEEECCCCe-EEEEeCCCCCccCCCC
Confidence             24467789999999999999999999999999 9999999999876554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=1.7e-23  Score=196.53  Aligned_cols=225  Identities=13%  Similarity=0.102  Sum_probs=160.6

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..|.+.|++|+|+| |+.+|++|+.|+ |+|||+............ +...+..++++++++.+++++       .|+.|
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-------~dg~i  233 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-------NVGNV  233 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-------SSSBE
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-------CCCcE
Confidence            46888999999998 789999998765 899999876543333220 123456778888888888776       67999


Q ss_pred             EEEeCCCCcEEEEEee-CCceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEE---eccCCCCceEEEeeCCCceE
Q 020784          159 MIWDDHQSRCIGELSF-RSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~-~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l---~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ++||++... +..+.. ...|.+++|+++   .++.++ ++.|++||+++.+....+   ..|...  +.++.+++++.+
T Consensus       234 ~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~spdg~~  310 (435)
T 4e54_B          234 ILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP--VNAACFSPDGAR  310 (435)
T ss_dssp             EEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSC--EEECCBCTTSSE
T ss_pred             eeeccCcce-eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccc--ccceeECCCCCe
Confidence            999987543 344443 458999999864   344444 579999999876554443   234444  445555567788


Q ss_pred             EEeecCCCCcEEEEeeCCcc-eEEeecccc------ceeEEEECCCCCEEEEEe------------CCCcEEEEEEcCCC
Q 020784          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDS------RIACFALTQDGQLLATSS------------TKGTLVRIFNTLDG  291 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~-~~~l~~H~~------~V~~vafspdg~~las~S------------~Dgt~IrIWd~~tg  291 (321)
                      |+ +|+.||.|+|||..... ...+..|..      .+..++|+|++.++++++            .+++ |+|||+.+|
T Consensus       311 l~-s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-i~iwd~~~g  388 (435)
T 4e54_B          311 LL-TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT-IDVFDGNSG  388 (435)
T ss_dssp             EE-EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC-EEEECSSSC
T ss_pred             eE-EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE-EEEEECCCC
Confidence            88 59999999999988654 455655543      234556777777776664            2356 999999999


Q ss_pred             cEEEEEeCCCcceeE---EEeecCceEEEe
Q 020784          292 TLLQEECCPSISAQS---GLWLSSAWLRVL  318 (321)
Q Consensus       292 ~~i~~~~~g~~~~~~---~~s~d~~~la~~  318 (321)
                      +++.++..++...+.   .|+++|++||.+
T Consensus       389 ~~~~~l~~~~~~~v~s~~~fspdg~~lasg  418 (435)
T 4e54_B          389 KMMCQLYDPESSGISSLNEFNPMGDTLASA  418 (435)
T ss_dssp             CEEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred             cEEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence            999998766664432   578999999865

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=8.4e-23  Score=189.52  Aligned_cols=198  Identities=14%  Similarity=0.045  Sum_probs=135.4

Q ss_pred             cCCCCCCeEEEEEcC--------CCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCC-eEEEEeCCCC
Q 020784           81 SSSPPPTLLHISFNQ--------DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPD  150 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~--------dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~sg~~~  150 (321)
                      ..+|.+.|++|+|+|        ||++||+|++|+ |+|||+.+.+....... |...+..+++++++. .+++++    
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~----  206 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLIVGE----  206 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEEEEE----
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEEecC----
Confidence            357889999999998        899999998855 89999988776544433 678899999998764 566665    


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEe--------------------------eCCceeEEEEe-C--CeEEEEE-CCEEEEEE
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELS--------------------------FRSEVRSVKLR-R--DRIIVVL-EQKIFVYN  200 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~--------------------------~~~~v~~v~~~-~--~~~~~~~-~~~I~iwd  200 (321)
                         .|++|++||+++++...+..                          +...+.++.|. +  ..++.+. ++++++||
T Consensus       207 ---~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          207 ---RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             ---TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             ---CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence               67999999998876543321                          12356777776 3  3444444 56999999


Q ss_pred             cCCcEEEEEEeccCCCC------------------ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccce
Q 020784          201 FADLKLLHQIETIANPK------------------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRI  261 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~------------------~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V  261 (321)
                      +..++....+..+....                  ..+.+++..++.+++ +|+.||.|++||...+. ...+.+|...|
T Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V  362 (393)
T 4gq1_A          284 LFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT-AHSQHGLIQLINTYEKDSNSIPIQLGMPI  362 (393)
T ss_dssp             C-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE-EETTTTEEEEEETTCTTCCEEEEECSSCE
T ss_pred             CccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE-EECCCCEEEEEECCCCcEEEEecCCCCcE
Confidence            98776666554332211                  123445555555666 69999999999988755 56788899999


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          262 ACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       262 ~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      ++|+|||||++||++++||  +.+|.+.
T Consensus       363 ~svafspdG~~LA~as~~G--v~lvrL~  388 (393)
T 4gq1_A          363 VDFCWHQDGSHLAIATEGS--VLLTRLM  388 (393)
T ss_dssp             EEEEECTTSSEEEEEESSE--EEEEEEG
T ss_pred             EEEEEcCCCCEEEEEeCCC--eEEEEEe
Confidence            9999999999999999665  5577653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=5.4e-23  Score=186.21  Aligned_cols=198  Identities=9%  Similarity=0.045  Sum_probs=148.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEE--ecCCCeEEEEeCCCCCCCCCCc
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEM--LFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~--~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ...|...|++++|+|+|++|++|+.++ |+|||+.+.+......  |.+.+..+++  .++++.+++++       .|+.
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~-------~dg~  152 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGS-------WDKT  152 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEEEECSSCEEEEEEE-------TTSE
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc--ccCceEEEEEEeCCCCCEEEEcc-------CCCc
Confidence            345788999999999999999999866 8899999887665444  6889999999  66677777777       6799


Q ss_pred             EEEEeCCCCcEEEEEeeCCceeEEEEeCC------------------------------------------------eEE
Q 020784          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD------------------------------------------------RII  189 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~------------------------------------------------~~~  189 (321)
                      |++||+++++.+..+..+..+.++.+...                                                .++
T Consensus       153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             EEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence            99999998887766665544433333221                                                144


Q ss_pred             EEE-CCEEEEEEcCCc---EEEEEEeccCCCC----------ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEe
Q 020784          190 VVL-EQKIFVYNFADL---KLLHQIETIANPK----------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI  254 (321)
Q Consensus       190 ~~~-~~~I~iwd~~~~---~~~~~l~~~~~~~----------~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l  254 (321)
                      ++. ++.|++||++..   +.+..+..|....          .+.++..++++.+|+ +|+.||.|++||+.++. +..+
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA-TVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE-EEETTSCEEEEETTTTEEEEEC
T ss_pred             EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE-EEccCCeEEEEECCCCcEEEEe
Confidence            444 468888888765   4555666654310          244555555667887 48999999999998765 6689


Q ss_pred             eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       255 ~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      .+|...|++++|+|+|++||+||.|+. .+.|++-
T Consensus       312 ~~~~~~v~~~~~s~~g~~l~~~s~d~~-~~~~~~~  345 (368)
T 3mmy_A          312 EQLDQPISACCFNHNGNIFAYASSYDW-SKGHEFY  345 (368)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEECCCS-TTCGGGC
T ss_pred             cCCCCCceEEEECCCCCeEEEEecccc-ccccccc
Confidence            999999999999999999999999885 5555543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8e-23  Score=208.75  Aligned_cols=201  Identities=11%  Similarity=0.102  Sum_probs=138.0

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCcEEEEEecCCceeEEeeee-----------------cCCceEEEEEecCCCeEE
Q 020784           82 SSPPPTLLHISFNQD-HGCFAAGTDHGFRIYNCDPFREIFRRDFE-----------------RGGGIGVVEMLFRCNILA  143 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasg~~~gv~vw~~~~~~~~~~~~~~-----------------~~~~v~~v~~~~~~~~~~  143 (321)
                      ..|.+.|++++|+|+ +.+|++|+.++..|||+.+.+........                 |...|..++|++++..++
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la  227 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII  227 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence            567789999999996 47888888876339999988766554430                 135699999999999998


Q ss_pred             EEeCCCCCCCCCCcEEEEeCCCCcEEEEEee-------------------CCceeEEEEe----CC--eEEEEE-C----
Q 020784          144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------------------RSEVRSVKLR----RD--RIIVVL-E----  193 (321)
Q Consensus       144 ~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~-------------------~~~v~~v~~~----~~--~~~~~~-~----  193 (321)
                      +++       .|++|++||+++++++....+                   ...|.+++|.    ++  .++++. .    
T Consensus       228 sgs-------~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          228 TIH-------EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             EEE-------TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             EEE-------CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            888       789999999999887653111                   2258888884    32  233222 2    


Q ss_pred             --CEEEEEEc----------------------------------------------------------------------
Q 020784          194 --QKIFVYNF----------------------------------------------------------------------  201 (321)
Q Consensus       194 --~~I~iwd~----------------------------------------------------------------------  201 (321)
                        ..+++|++                                                                      
T Consensus       301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~  380 (902)
T 2oaj_A          301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML  380 (902)
T ss_dssp             SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred             CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence              15656652                                                                      


Q ss_pred             -CCcEEEEE-------EeccCCCCceEEE--------------------------------eeCCCceEEEeecCCCCcE
Q 020784          202 -ADLKLLHQ-------IETIANPKGLCAV--------------------------------SQGVGSLVLVCPGLQKGQV  241 (321)
Q Consensus       202 -~~~~~~~~-------l~~~~~~~~~~~~--------------------------------s~~~d~~~la~sGs~dg~V  241 (321)
                       .++.....       +..|...+..+++                                ...+++.+|| +|+.||+|
T Consensus       381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la-Sgs~DgtV  459 (902)
T 2oaj_A          381 YPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI-TGHSNGSV  459 (902)
T ss_dssp             TTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE-EEETTSEE
T ss_pred             CCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE-EecCCCcE
Confidence             22111000       0000011111122                                1235667888 69999999


Q ss_pred             EEEeeCCcceE---Ee----e-----ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          242 RVEHYASKRTK---FI----M-----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       242 ~i~d~~~~~~~---~l----~-----~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      ++||+..+.+.   .+    .     +|...|++|+|+|||++||+|+.||+ |||||+.++
T Consensus       460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~  520 (902)
T 2oaj_A          460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVN  520 (902)
T ss_dssp             EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEEC
T ss_pred             EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCc
Confidence            99998765431   12    1     89999999999999999999999999 999999877

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=2.4e-22  Score=183.89  Aligned_cols=188  Identities=12%  Similarity=0.094  Sum_probs=143.5

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+..++|.+++++++ +|+. +.|+|||..+++.+....+  ...+..+.+.  .+.++++.        ++.|++||+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~--~~~v~~v~~~--~~~~~~~~--------~~~i~i~d~~  127 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV--DAPVKDLFLS--REFIVVSY--------GDVISVFKFG  127 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC--SSCEEEEEEC--SSEEEEEE--------TTEEEEEESS
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC--CCceEEEEEc--CCEEEEEE--------cCEEEEEECC
Confidence            477889999988875 4554 5689999999988776664  6677776664  45555554        5889999999


Q ss_pred             CC-cEEEEEeeCCceeEEEEeCCeEEEE---ECCEEEEEEcCCcE----------------EEEEEeccCCCCceEEEee
Q 020784          165 QS-RCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK----------------LLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       165 ~~-~~~~~~~~~~~v~~v~~~~~~~~~~---~~~~I~iwd~~~~~----------------~~~~l~~~~~~~~~~~~s~  224 (321)
                      ++ +.+..+..  ....+++.+..++++   .++.|++||+.+++                .++.+..|...+..+++++
T Consensus       128 ~~~~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~  205 (355)
T 3vu4_A          128 NPWKRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR  205 (355)
T ss_dssp             TTCCBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred             CCceeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence            87 55554444  333455666677665   24799999998765                2677888877766666655


Q ss_pred             CCCceEEEeecCCCCc-EEEEeeCCcc-eEEee-c-cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          225 GVGSLVLVCPGLQKGQ-VRVEHYASKR-TKFIM-A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~-V~i~d~~~~~-~~~l~-~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                        ++.+|| +|+.||+ |+|||+.++. +.++. + |...|++++|+|+|++||+|+.|++ |+|||++++.
T Consensus       206 --~g~~l~-s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~  273 (355)
T 3vu4_A          206 --KSDMVA-TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQ  273 (355)
T ss_dssp             --TSSEEE-EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCS
T ss_pred             --CCCEEE-EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCC
Confidence              568888 5999998 9999998765 66787 5 9999999999999999999999999 9999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=1.2e-22  Score=188.37  Aligned_cols=220  Identities=10%  Similarity=0.037  Sum_probs=165.1

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCcee----EEeeeecCCceEEEEEec-CCCeEEEEeCCCCCCCCCCcEE
Q 020784           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREI----FRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        87 ~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~----~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ...+++++|+...++ +|+. +.|+||++...+..    ..... |.+.|..+++++ +++.+++++       .|++|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s-------~dg~v~  107 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDNVIASGS-------EDCTVM  107 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTTEEEEEE-------TTSEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCCEEEEEe-------CCCeEE
Confidence            345689999886555 4555 45889998654321    11112 678999999998 888888887       679999


Q ss_pred             EEeCCCC-------cEEEEEe-eCCceeEEEEeCCe---EEEEE-CCEEEEEEcCCcEEEEEE--eccCCCCceEEEeeC
Q 020784          160 IWDDHQS-------RCIGELS-FRSEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQG  225 (321)
Q Consensus       160 iWD~~~~-------~~~~~~~-~~~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~~~~~l--~~~~~~~~~~~~s~~  225 (321)
                      |||+.++       +.+..+. +...|.+++|+++.   ++++. ++.|++||+.+++.+.++  ..|...+..++++  
T Consensus       108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--  185 (402)
T 2aq5_A          108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS--  185 (402)
T ss_dssp             EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC--
T ss_pred             EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC--
Confidence            9999887       4455665 44589999999863   44554 579999999999999999  5665555555554  


Q ss_pred             CCceEEEeecCCCCcEEEEeeCCcc-eEEe-eccccc-eeEEEECCCCCEEEEE---eCCCcEEEEEEcCCCcE-EEEEe
Q 020784          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFI-MAHDSR-IACFALTQDGQLLATS---STKGTLVRIFNTLDGTL-LQEEC  298 (321)
Q Consensus       226 ~d~~~la~sGs~dg~V~i~d~~~~~-~~~l-~~H~~~-V~~vafspdg~~las~---S~Dgt~IrIWd~~tg~~-i~~~~  298 (321)
                      +++.+|+ +|+.||.|++||+..+. +..+ .+|.+. +.+++|+|+|.+|++|   +.|+. |+|||+++++. +....
T Consensus       186 ~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~  263 (402)
T 2aq5_A          186 RDGALIC-TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQE  263 (402)
T ss_dssp             TTSSCEE-EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEE
T ss_pred             CCCCEEE-EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEe
Confidence            4667777 48899999999998765 4566 788876 9999999999999999   78999 99999999764 33333


Q ss_pred             CCC--cceeEEEeecCceEEEe
Q 020784          299 CPS--ISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       299 ~g~--~~~~~~~s~d~~~la~~  318 (321)
                      ..+  ....+.+++++++|+++
T Consensus       264 ~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          264 LDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             CCCCSSCEEEEEETTTTEEEEE
T ss_pred             ccCCCceeEEEEcCCCCEEEEE
Confidence            233  34455788999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.1e-23  Score=192.82  Aligned_cols=194  Identities=8%  Similarity=0.017  Sum_probs=142.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCc---eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..|...|++++|+|+|++|++|+.++ |+|||+.+.+   ....... |...+..++++++++.+++++       .|++
T Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~d~~  123 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNEDKFAVGS-------GARV  123 (377)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSSCCEEEE-------SSSC
T ss_pred             ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCCEEEEEe-------cCCe
Confidence            46788999999999999999998755 8999998876   3333222 678899999999999998888       6799


Q ss_pred             EEEEeCCCCc---EEEEEe--eCCceeEEEEeCC--eEEEEE-CCEEEEEEcC------------------CcEEEEEEe
Q 020784          158 VMIWDDHQSR---CIGELS--FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFA------------------DLKLLHQIE  211 (321)
Q Consensus       158 v~iWD~~~~~---~~~~~~--~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~------------------~~~~~~~l~  211 (321)
                      |++||+++++   ....+.  +...|.+++|+++  .+++++ ++.|++||+.                  .++++..+ 
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            9999999876   355555  4568999999976  355554 5699999985                  35566666 


Q ss_pred             ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-----eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 020784          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (321)
Q Consensus       212 ~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-----~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIW  286 (321)
                      .|...+..+++  .+++.+|+ +|+.||.|++||+....     +..+.+|...|++++|+|+|++|++|+.|+. + +|
T Consensus       203 ~~~~~v~~~~~--sp~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~  277 (377)
T 3dwl_C          203 PSGGWVHAVGF--SPSGNALA-YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP-I-LL  277 (377)
T ss_dssp             CCSSSEEEEEE--CTTSSCEE-EEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE-E-EE
T ss_pred             cCCceEEEEEE--CCCCCEEE-EEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE-E-EE
Confidence            55555444555  45667787 48999999999998754     4578999999999999999999999986655 5 77


Q ss_pred             EcC
Q 020784          287 NTL  289 (321)
Q Consensus       287 d~~  289 (321)
                      +..
T Consensus       278 ~~~  280 (377)
T 3dwl_C          278 QGN  280 (377)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            665

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.5e-23  Score=198.68  Aligned_cols=213  Identities=10%  Similarity=0.018  Sum_probs=155.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCC-----------------------------ceeEEeeeecCCceEEEEE
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF-----------------------------REIFRRDFERGGGIGVVEM  135 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~-----------------------------~~~~~~~~~~~~~v~~v~~  135 (321)
                      ..|.+|+|+|||+++|+++.|+ |+  |....                             +......+.|...|..++|
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE
Confidence            4788999999999999998865 52  32221                             1111111114567999999


Q ss_pred             ecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC-----ceeEEEEeCCe--EEEEE-CCEEEEEEcCCcE--
Q 020784          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDR--IIVVL-EQKIFVYNFADLK--  205 (321)
Q Consensus       136 ~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-----~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~--  205 (321)
                      ++++..+|+++       .||+|+|||.+.  ++..+.++.     .|.+++|+++.  +++++ +++|++||+.+++  
T Consensus        94 SPdG~~LAs~s-------~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           94 SPIDDWMAVLS-------NNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             CSSSSCEEEEE-------TTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             CCCCCEEEEEe-------CCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            99999999999       789999999654  666666222     49999999864  66666 5799999998774  


Q ss_pred             -----EEEEEe----ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce----EEe-eccccceeEEEECCCCC
Q 020784          206 -----LLHQIE----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFI-MAHDSRIACFALTQDGQ  271 (321)
Q Consensus       206 -----~~~~l~----~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~----~~l-~~H~~~V~~vafspdg~  271 (321)
                           .++++.    +|...+..+++++  |+  ++ +++.|+.|++|+...+..    .++ .+|...|.+|+|+  |+
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSP--dg--La-ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYE--DV--LV-AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY  237 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEET--TE--EE-EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred             cccceeeeeeecccccccccEEEEEEcC--Cc--EE-EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence                 467774    3445555566654  55  44 367799999999987653    356 4899999999999  68


Q ss_pred             EEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEE--eecCceEEEee
Q 020784          272 LLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGL--WLSSAWLRVLR  319 (321)
Q Consensus       272 ~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~--s~d~~~la~~~  319 (321)
                      +||+++ |++ |++||+.+++... +..||...  .+.+  ++|++.|++|-
T Consensus       238 ~LASa~-~~t-IkLWd~~~~~~~~-~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          238 KVVLTC-PGY-VHKIDLKNYSISS-LKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             EEEEEC-SSE-EEEEETTTTEEEE-EECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             EEEEEe-CCe-EEEEECCCCeEEE-EEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            999998 688 9999999888743 33366643  4577  88888888763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=2.1e-22  Score=188.88  Aligned_cols=199  Identities=11%  Similarity=0.156  Sum_probs=154.9

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEecCCce-------eEEeeeecCCceEEEEEec-CCCeEEEEeCCCCC
Q 020784           82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFRE-------IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDP  151 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasg~~~g-v~vw~~~~~~~-------~~~~~~~~~~~v~~v~~~~-~~~~~~~~sg~~~~  151 (321)
                      ..|...|++++|+|++. +|++|+.+| |+||++.....       ...... |.+.+..+++++ +.+.+++++     
T Consensus       178 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~-----  251 (430)
T 2xyi_A          178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVA-----  251 (430)
T ss_dssp             ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEE-----
T ss_pred             cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEe-----
Confidence            46788999999999998 999998765 88999987321       112222 677899999988 566777766     


Q ss_pred             CCCCCcEEEEeCCCC---cEEEEEe-eCCceeEEEEeCCe---EEEEE-CCEEEEEEcCC-cEEEEEEeccCCCCceEEE
Q 020784          152 QYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDR---IIVVL-EQKIFVYNFAD-LKLLHQIETIANPKGLCAV  222 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~---~~~~~~~-~~~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~-~~~~~~l~~~~~~~~~~~~  222 (321)
                        .|+.|++||++++   +.+..+. +...|.+++|+++.   ++++. ++.|++||+++ .+.+..+..|...+..+++
T Consensus       252 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~  329 (430)
T 2xyi_A          252 --DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  329 (430)
T ss_dssp             --TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred             --CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence              5799999999876   4555554 44689999999753   44444 57999999987 5677888888776666666


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCC---------------cceEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEE
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYAS---------------KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIF  286 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~---------------~~~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIW  286 (321)
                      ++++. .+++ +|+.||.|+|||+..               ..+..+.+|...|++++|+|+++ +||+++.||+ |+||
T Consensus       330 sp~~~-~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~-i~iw  406 (430)
T 2xyi_A          330 SPHNE-TILA-SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI-MQVW  406 (430)
T ss_dssp             CSSCT-TEEE-EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE-EEEE
T ss_pred             CCCCC-CEEE-EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC-EEEe
Confidence            66532 3455 588999999999875               34567889999999999999999 9999999999 9999


Q ss_pred             EcCCC
Q 020784          287 NTLDG  291 (321)
Q Consensus       287 d~~tg  291 (321)
                      ++..+
T Consensus       407 ~~~~~  411 (430)
T 2xyi_A          407 QMAEN  411 (430)
T ss_dssp             EECHH
T ss_pred             Ecccc
Confidence            99864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.8e-22  Score=202.57  Aligned_cols=201  Identities=11%  Similarity=0.015  Sum_probs=157.2

Q ss_pred             CCCCCCeEEEEEcCC--CCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecC--CCeEEEEeCCCCCCCCC
Q 020784           82 SSPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (321)
Q Consensus        82 ~~~~~~V~~v~fs~d--g~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~d  155 (321)
                      ..|.+.|++++|+++  |++|++|+.+| |+|||+.+++......+. |.+.|.+++++++  ++.+++++       .|
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-------~d  122 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-------SD  122 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TT
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe-------CC
Confidence            467889999999988  99999999866 889999988632222222 6788999999998  88888887       67


Q ss_pred             CcEEEEeCCCCcE--EEEE-eeCCceeEEEEeC---------------CeEEEEE-CCEEEEEEcCCc----EEEEEEec
Q 020784          156 NKVMIWDDHQSRC--IGEL-SFRSEVRSVKLRR---------------DRIIVVL-EQKIFVYNFADL----KLLHQIET  212 (321)
Q Consensus       156 ~~v~iWD~~~~~~--~~~~-~~~~~v~~v~~~~---------------~~~~~~~-~~~I~iwd~~~~----~~~~~l~~  212 (321)
                      ++|++||++++..  ...+ .+...|.++.|++               ..+++++ ++.|++||++++    ..+..+..
T Consensus       123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  202 (753)
T 3jro_A          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (753)
T ss_dssp             SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence            9999999988732  2222 3456899999987               2355555 579999999765    66677777


Q ss_pred             cCCCCceEEEeeCCC-ceEEEeecCCCCcEEEEeeCCc------ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEE
Q 020784          213 IANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASK------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (321)
Q Consensus       213 ~~~~~~~~~~s~~~d-~~~la~sGs~dg~V~i~d~~~~------~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrI  285 (321)
                      |...+..++++++.. +.+++ +|+.||.|++||...+      .......|...|++++|+|+|++|++|+.||. |+|
T Consensus       203 h~~~V~~l~~sp~~~~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~-I~v  280 (753)
T 3jro_A          203 HSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VTL  280 (753)
T ss_dssp             CSSCEEEEEECCCCSSSEEEE-EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC-EEC
T ss_pred             CCCcEEEEEeccCCCCCCEEE-EEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE-EEE
Confidence            777666666665410 57777 5999999999999875      23345669999999999999999999999999 999


Q ss_pred             EEcCCC
Q 020784          286 FNTLDG  291 (321)
Q Consensus       286 Wd~~tg  291 (321)
                      ||+.++
T Consensus       281 wd~~~~  286 (753)
T 3jro_A          281 WKENLE  286 (753)
T ss_dssp             CBCCSS
T ss_pred             EecCCC
Confidence            999853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=2.2e-21  Score=174.82  Aligned_cols=226  Identities=11%  Similarity=0.053  Sum_probs=147.3

Q ss_pred             CeEEEEEcCCCC---EEEEEcCCcEEEEEecCC---ceeEEeeeecCCceEEEEE-------------------------
Q 020784           87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPF---REIFRRDFERGGGIGVVEM-------------------------  135 (321)
Q Consensus        87 ~V~~v~fs~dg~---~lasg~~~gv~vw~~~~~---~~~~~~~~~~~~~v~~v~~-------------------------  135 (321)
                      .|.++.|-.-|-   +++++++.+|++|+....   +..+.+++ |...|..+.+                         
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            455666665554   789999999999999888   67777776 4433433333                         


Q ss_pred             ecC----CCeEEEEeC---------CCC----CCCCCCcEEEEeCC-CCcEEEEEeeCC-ceeEEEEeC-----CeEEEE
Q 020784          136 LFR----CNILALVGG---------GPD----PQYPLNKVMIWDDH-QSRCIGELSFRS-EVRSVKLRR-----DRIIVV  191 (321)
Q Consensus       136 ~~~----~~~~~~~sg---------~~~----~~~~d~~v~iWD~~-~~~~~~~~~~~~-~v~~v~~~~-----~~~~~~  191 (321)
                      +++    +..++..+.         +..    ..-.|++|++|++. +|+.+..+..+. .+..++|++     ..++.+
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence            333    222222110         000    00137888999984 477766665544 566666665     456665


Q ss_pred             E-CCEEEEEEcCCcEEEEEEeccCCC-Cce--EEEeeCCCceEEE-----------eecCCCCcEEEEeeCCcce-EEe-
Q 020784          192 L-EQKIFVYNFADLKLLHQIETIANP-KGL--CAVSQGVGSLVLV-----------CPGLQKGQVRVEHYASKRT-KFI-  254 (321)
Q Consensus       192 ~-~~~I~iwd~~~~~~~~~l~~~~~~-~~~--~~~s~~~d~~~la-----------~sGs~dg~V~i~d~~~~~~-~~l-  254 (321)
                      + |++|||||+.++++++++.+|... ..+  ++|+++  +.+++           .+|+.|++|++||..++.. .++ 
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd--G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM--GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET--TEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC--CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence            5 579999999999999999865432 233  356664  46552           3689999999999887763 333 


Q ss_pred             ----eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--e-eEEEeecCceEEEee
Q 020784          255 ----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--A-QSGLWLSSAWLRVLR  319 (321)
Q Consensus       255 ----~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~-~~~~s~d~~~la~~~  319 (321)
                          .+|...+.+..++  +.++|+||.|++ |||||+.+|++++++. +|..  . .+.|++||++|+.+.
T Consensus       278 ~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT-IkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDVK--DHCAAAILTSGT-IAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             ECCCTTCCCCEEEEEEE--TTEEEEEETTSC-EEEEETTTCSEEEEEC-CC--CCCCEEEECSSSSEEEEEC
T ss_pred             eeccCCCcceeEccccC--CCEEEEEcCCCc-EEEEECCCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEE
Confidence                4777766555554  889999999999 9999999999999995 4432  2 358999999998764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=1.7e-20  Score=172.49  Aligned_cols=209  Identities=11%  Similarity=0.069  Sum_probs=163.9

Q ss_pred             CEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC
Q 020784           98 GCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS  176 (321)
Q Consensus        98 ~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~  176 (321)
                      .+|++++.+ .|++||+++++.......  ...+..++++++++.++++++      .+++|++||..+++.+..+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~------~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeec--CCCcceEEECCCCCEEEEECC------CCCeEEEEECCCCeEEEEEECCC
Confidence            456777764 588999999887666553  456888999999987755542      46899999999999999998888


Q ss_pred             ceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE
Q 020784          177 EVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (321)
Q Consensus       177 ~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~  252 (321)
                      .+.+++|+++  .++++.  ++.|++||+.+++.+..+..+..   ..++...+++..++++++.++.|++||..++...
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            9999999975  355554  37999999999999888876543   3444555566766546888999999998876644


Q ss_pred             -EeeccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          253 -FIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       253 -~l~~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                       .+..| ..+.+++|+|+|++| ++++.|++ |++||+++++++..+........+.+++++++|+++.
T Consensus       152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEE
T ss_pred             EEEecC-CCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEe
Confidence             55544 567999999999877 67788888 9999999999998887655555668889999988764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.89  E-value=6.3e-21  Score=177.67  Aligned_cols=223  Identities=6%  Similarity=-0.013  Sum_probs=172.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeee----ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDF----ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~----~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..+.+++|+|++.++++++.++ |++||+.+++.......    .|.+.+..+++.+++..+++.+       .|+.|++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-------~d~~v~~  195 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM-------QANAVHV  195 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG-------GGTEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC-------CCCEEEE
Confidence            4567999999888888887754 99999998876543221    1456788888877777777666       5799999


Q ss_pred             EeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      ||+++++.+..+..+ ..+.+++|+++  .++++.  ++.|++||+++++.+..+..+..   ..++..++++..+++.+
T Consensus       196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL---PRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE---EEEEEECTTSSEEEEEE
T ss_pred             EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC---ceEEEEcCCCCEEEEEE
Confidence            999999988887654 47899999975  354554  47999999999998887765432   44555556666666433


Q ss_pred             C-------CCCcEEEEeeCCcceEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEE
Q 020784          236 L-------QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSG  307 (321)
Q Consensus       236 s-------~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~  307 (321)
                      .       .||.|++||..++.......|...+.+++|+|+|+ ++++++.|++ |++||+.+++++..+..+.....+.
T Consensus       273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~  351 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIPVFDKPNTIA  351 (433)
T ss_dssp             EESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             CCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEecCCCCCCeEE
Confidence            2       58899999998877666667888999999999997 5577788999 9999999999999887666666778


Q ss_pred             EeecCceEEEee
Q 020784          308 LWLSSAWLRVLR  319 (321)
Q Consensus       308 ~s~d~~~la~~~  319 (321)
                      +++++++|+++.
T Consensus       352 ~s~dg~~l~~~~  363 (433)
T 3bws_A          352 LSPDGKYLYVSC  363 (433)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            899999988764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.6e-21  Score=177.21  Aligned_cols=192  Identities=9%  Similarity=-0.003  Sum_probs=137.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEEec---------CCceeEEeeeecCCceEEEEEec--CCCeEEEEeCCCCCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCD---------PFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQY  153 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~g-v~vw~~~---------~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~sg~~~~~~  153 (321)
                      ..|+++.|+|+   |++|+.|+ +++|+.+         +.+.+......|.+.+..+++++  +++.+++++       
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-------  146 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD-------  146 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE-------
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe-------
Confidence            46777888888   77777654 7899654         44433333322456799999998  888888887       


Q ss_pred             CCCcEEEEeCCCCcEEEEEee--CCceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEE-EEEec-cCCCCceEEEeeCC
Q 020784          154 PLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLL-HQIET-IANPKGLCAVSQGV  226 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~-~~l~~-~~~~~~~~~~s~~~  226 (321)
                      .|++|++||+++++.+.....  ...+.+++|+++.  +++++ ++.|++||+++++.+ .++.. |..++..++|+  +
T Consensus       147 ~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs--~  224 (343)
T 3lrv_A          147 NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA--D  224 (343)
T ss_dssp             TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC--T
T ss_pred             CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe--C
Confidence            689999999999988665533  3469999999875  33333 579999999998877 77877 66665555555  4


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcc-eEEee---cccccee--EEEECCCCCEEEEEeC-CCcEEEEEEcCCCc
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIM---AHDSRIA--CFALTQDGQLLATSST-KGTLVRIFNTLDGT  292 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~-~~~l~---~H~~~V~--~vafspdg~~las~S~-Dgt~IrIWd~~tg~  292 (321)
                      ++.+|++ |+ ++.|++||+.... ...+.   .|...+.  +++|+|+|++||+++. |+. |+||++.++.
T Consensus       225 ~g~~l~s-~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~-i~v~~~~~~~  294 (343)
T 3lrv_A          225 NGYWMVV-EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS-LTIYKFDKKT  294 (343)
T ss_dssp             TSSEEEE-EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTE-EEEEEECTTT
T ss_pred             CCCEEEE-Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCc-EEEEEEcccc
Confidence            5688884 66 5599999988654 33333   3555555  6999999999999998 888 9999997654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.83  E-value=2.7e-18  Score=160.42  Aligned_cols=217  Identities=11%  Similarity=-0.008  Sum_probs=156.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC----cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDH----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~----gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .|...|.+++|+|||++||+++.+    .+++||+.+++......  +.+.+..++|+++++.+++++..+    .+..|
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~--~~~~~~~~~~spdg~~la~~~~~~----g~~~i  249 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKT----GSLNL  249 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEECTT----SSCEE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec--CCCcccCEEEcCCCCEEEEEEecC----CCceE
Confidence            466789999999999999988764    58899999887653332  467788999999999888665321    23569


Q ss_pred             EEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC--C--EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~--~--~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      ++||+.+++......+...+.++.|+++.  ++.+.+  +  .|.+||+.+++. ..+..+...  ...+.+.+|+.+|+
T Consensus       250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~--~~~~~~spdG~~l~  326 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQ--NQDADVSSDGKFMV  326 (415)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSE--EEEEEECTTSSEEE
T ss_pred             EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCc--ccCeEECCCCCEEE
Confidence            99999988875444445578899999764  555554  2  788889987764 334333333  33444555667777


Q ss_pred             eecCCC--CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEeCCCcceeEE
Q 020784          233 CPGLQK--GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEECCPSISAQSG  307 (321)
Q Consensus       233 ~sGs~d--g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg---t~IrIWd~~tg~~i~~~~~g~~~~~~~  307 (321)
                      +++..+  +.|.+||..++....+..|. .+.+++|+|||++|++++.|+   . |++||+.. +..+.+ .++...+..
T Consensus       327 ~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~-l~~~d~~g-~~~~~l-~~~~~~v~~  402 (415)
T 2hqs_A          327 MVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV-LNLVSTDG-RFKARL-PATDGQVKF  402 (415)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEE-EEEEETTS-CCEEEC-CCSSSEEEE
T ss_pred             EEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccE-EEEEECCC-CcEEEe-eCCCCCCcC
Confidence            644443  47888999888777777775 899999999999999998887   6 99999874 445666 345445555


Q ss_pred             EeecC
Q 020784          308 LWLSS  312 (321)
Q Consensus       308 ~s~d~  312 (321)
                      .+|++
T Consensus       403 ~~~~~  407 (415)
T 2hqs_A          403 PAWSP  407 (415)
T ss_dssp             EEECC
T ss_pred             Ccccc
Confidence            55554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=1.3e-18  Score=152.25  Aligned_cols=227  Identities=7%  Similarity=-0.087  Sum_probs=158.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecC-CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .|...|.+++|+|||++|++++++.+.+||+++ .+........+...+..++++++++.+++++...     ++.++||
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~l~  113 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE-----FGKSAIY  113 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT-----TSSCEEE
T ss_pred             cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC-----CCcceEE
Confidence            356689999999999999999988899999988 6654333220124567789999999998887331     2445555


Q ss_pred             --eCCCCcEEEEEeeCCceeEEEEeCCe--EEE-E-ECCEEEEEEc--CCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          162 --DDHQSRCIGELSFRSEVRSVKLRRDR--IIV-V-LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       162 --D~~~~~~~~~~~~~~~v~~v~~~~~~--~~~-~-~~~~I~iwd~--~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                        |..++. ...+.....+..+.|+++.  +++ + .++.+++|++  .+++. ..+..+...  +..+...+++..+++
T Consensus       114 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~--~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          114 LLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGEGR--NDGPDYSPDGRWIYF  189 (297)
T ss_dssp             EEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSSSC--EEEEEECTTSSEEEE
T ss_pred             EEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCCCc--cccceECCCCCEEEE
Confidence              455554 3445555568888998763  442 3 3578888886  34433 444444333  344455556677776


Q ss_pred             ecCCCCcEEEEeeC--CcceEEeeccccceeEEEECCCCCEEEEEeCC-----------CcEEEEEEcCCCcEE--EEEe
Q 020784          234 PGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQLLATSSTK-----------GTLVRIFNTLDGTLL--QEEC  298 (321)
Q Consensus       234 sGs~dg~V~i~d~~--~~~~~~l~~H~~~V~~vafspdg~~las~S~D-----------gt~IrIWd~~tg~~i--~~~~  298 (321)
                      ++..++.++||++.  .+....+..|...+.+++|+|+|++|+.++.|           +. |++||+.+++..  ..+.
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSCEEEEEEE
T ss_pred             EecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCceeeeccC
Confidence            56678899998764  45577888899999999999999999998876           45 999999998763  3332


Q ss_pred             C-CCcceeEEEeecCceEEEee
Q 020784          299 C-PSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       299 ~-g~~~~~~~~s~d~~~la~~~  319 (321)
                      . ......+.+++|+++|+++.
T Consensus       269 ~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          269 GGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             ESTTTSCSCCBCTTSSEEEEEE
T ss_pred             CCCcccccceECCCCCEEEEEE
Confidence            1 22344568889999998875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=1.4e-17  Score=149.36  Aligned_cols=228  Identities=12%  Similarity=0.077  Sum_probs=155.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC--CcEEEEEec--CCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD--HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~--~gv~vw~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      +...+.+++|+|||++|++++.  +.+++|+++  +++......+...+.+..++++++++.+++++.      .++.|+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~i~  109 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNVS  109 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------CCCeEE
Confidence            3446888999999998887776  458899998  444332223222346778889999998877763      358899


Q ss_pred             EEeCC---CCcEEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEcCC-cEEEE----EEeccCCCCceEEEeeCCC
Q 020784          160 IWDDH---QSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD-LKLLH----QIETIANPKGLCAVSQGVG  227 (321)
Q Consensus       160 iWD~~---~~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~-~~~~~----~l~~~~~~~~~~~~s~~~d  227 (321)
                      +||+.   .++.+..+.....+.++.|+++  .++++.  ++.|++||+.+ ++...    .+.... ......+..+++
T Consensus       110 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pd  188 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTT
T ss_pred             EEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCC
Confidence            99994   4445555555667888999876  455554  47999999987 65432    222221 123344555666


Q ss_pred             ceEEEeecCCCCcEEEEeeCC--cceE---Eee----cc--ccceeEEEECCCCCEEE-EEeCCCcEEEEEEcC--C--C
Q 020784          228 SLVLVCPGLQKGQVRVEHYAS--KRTK---FIM----AH--DSRIACFALTQDGQLLA-TSSTKGTLVRIFNTL--D--G  291 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~--~~~~---~l~----~H--~~~V~~vafspdg~~la-s~S~Dgt~IrIWd~~--t--g  291 (321)
                      +.++++++..++.|.+|++..  +.+.   .+.    +|  ...+..++|+|+|++|+ +++.|+. |++||+.  +  .
T Consensus       189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~~~  267 (343)
T 1ri6_A          189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSVL  267 (343)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCCE
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCCce
Confidence            676655577889999999853  3222   222    11  23577899999998776 5557888 9999998  3  3


Q ss_pred             cEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          292 TLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       292 ~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      +.+..+..+.....+.+++||++|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          268 SKEGFQPTETQPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             EEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             EEeeeecCCCccceEEECCCCCEEEEec
Confidence            5566666555566678899999988763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=8.8e-17  Score=145.02  Aligned_cols=220  Identities=13%  Similarity=0.032  Sum_probs=166.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           86 PTLLHISFNQDHGCFAAGTD--------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~--------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ..+..++|+|||++|++++.        +.|.+||..+++.......  ......+.++++++.++++..      .++.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~------~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNT------VNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEET------TTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEec------CCCE
Confidence            46889999999998887763        3488999998887666554  455667788899987776663      3589


Q ss_pred             EEEEeCCCCcEEEEEeeCC----------ceeEEEEeCC--eEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEE
Q 020784          158 VMIWDDHQSRCIGELSFRS----------EVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~----------~v~~v~~~~~--~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~  222 (321)
                      |.+||.++++.+..+....          .+.++.++++  .++++.   ++.|.+||+.+++.+..+..+......+++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            9999999999888877643          2678899875  466654   468999999999998888744333445666


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCCcceE-Eeec----cccceeEEEECCCCCEEEEEeCC-CcEEEEEEcCCCcEEEE
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA----HDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQE  296 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~----H~~~V~~vafspdg~~las~S~D-gt~IrIWd~~tg~~i~~  296 (321)
                      ++++  ..+++ ++.++.|.+||..++... .+..    +...+..++|+|+|++|+.++.+ +. |.+||+.+++.+..
T Consensus       193 s~dg--~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEG--KRLYT-TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTT--TEEEE-ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCEEEE
T ss_pred             CCCC--CEEEE-EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcEEEE
Confidence            6654  55554 466899999998876643 4443    56678899999999977666655 66 99999999999998


Q ss_pred             EeCCCcceeEEEeecCceEEEe
Q 020784          297 ECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       297 ~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      +..+. ...+.+++||++|.++
T Consensus       269 ~~~~~-~~~~~~s~dg~~l~v~  289 (353)
T 3vgz_A          269 VAAPE-SLAVLFNPARNEAYVT  289 (353)
T ss_dssp             EECSS-CCCEEEETTTTEEEEE
T ss_pred             EEcCC-CceEEECCCCCEEEEE
Confidence            87655 3557889999987665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.81  E-value=2e-17  Score=154.58  Aligned_cols=212  Identities=13%  Similarity=0.035  Sum_probs=151.9

Q ss_pred             CCEEEEEcC-------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           97 HGCFAAGTD-------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        97 g~~lasg~~-------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      +..|+.++.       ..+++||++..... .... |.+.+..++|+++++.++.++...    .+.+|++||+++++..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~-~l~~-~~~~v~~~~~Spdg~~la~~s~~~----~~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQF-VVHR-SPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVR  216 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCE-EEEE-ESSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCE-EEeC-CCCcceeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCcEE
Confidence            555655443       35889999754432 2222 578899999999999999888321    1258999999999877


Q ss_pred             EEEeeCCceeEEEEeCCe--EEEEE--C--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC--cE
Q 020784          170 GELSFRSEVRSVKLRRDR--IIVVL--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QV  241 (321)
Q Consensus       170 ~~~~~~~~v~~v~~~~~~--~~~~~--~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~V  241 (321)
                      ....+...+.++.|+++.  ++...  +  ..|++||+.+++. ..+..+...  ...+.+.+|+..|++++..+|  .|
T Consensus       217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~--~~~~~~spdg~~l~~~s~~~g~~~i  293 (415)
T 2hqs_A          217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN--NTEPTWFPDSQNLAFTSDQAGRPQV  293 (415)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC--EEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc--ccceEECCCCCEEEEEECCCCCcEE
Confidence            555566689999999864  44343  2  3699999988776 455555443  344445556677776454456  45


Q ss_pred             EEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          242 RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       242 ~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~D---gt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      .+||..++....+..|...+.+++|+|||++|++++.+   .. |++||+.++++. .+..........+++||++|+++
T Consensus       294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~  371 (415)
T 2hqs_A          294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYS  371 (415)
T ss_dssp             EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEE
Confidence            55788777777777888899999999999999998875   46 999999999884 45433334456889999999876


Q ss_pred             e
Q 020784          319 R  319 (321)
Q Consensus       319 ~  319 (321)
                      +
T Consensus       372 s  372 (415)
T 2hqs_A          372 S  372 (415)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=3e-17  Score=158.72  Aligned_cols=222  Identities=10%  Similarity=-0.036  Sum_probs=159.7

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEEe--cCCceeEEeeeecCCceEEEEEec----CCCeEEEEeCCCCCCCCCCcEE
Q 020784           87 TLLHISFNQDHGCFAAGTD-HGFRIYNC--DPFREIFRRDFERGGGIGVVEMLF----RCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~gv~vw~~--~~~~~~~~~~~~~~~~v~~v~~~~----~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .+.+++|+|||++|++++. +.|++||+  .+++.+....  ++.....+++++    +++.+++++.      .+++|+
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~------~~~~v~  251 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAY------WPPQFA  251 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEc------cCCeEE
Confidence            3899999999999998887 55889999  7777655554  356678889998    8988877762      358899


Q ss_pred             EEeCCCCcEEEEEeeC-----------C-cee--------------------------------------------EEEE
Q 020784          160 IWDDHQSRCIGELSFR-----------S-EVR--------------------------------------------SVKL  183 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-----------~-~v~--------------------------------------------~v~~  183 (321)
                      |||..+++++..+...           . .+.                                            .+.|
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~  331 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGW  331 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEE
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceE
Confidence            9998887776655421           0 122                                            2334


Q ss_pred             eCC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCC--ceEEEeeCCC-ceEEEeecCCCCcEEEEeeCC--------
Q 020784          184 RRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVG-SLVLVCPGLQKGQVRVEHYAS--------  248 (321)
Q Consensus       184 ~~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~--~~~~~s~~~d-~~~la~sGs~dg~V~i~d~~~--------  248 (321)
                      +++  .++++.  +++|.+||+.+++++.++.....+.  ....+. +++ +.+++++...|++|.+|+...        
T Consensus       332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~-~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~  410 (543)
T 1nir_A          332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  410 (543)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccC-CCCCccEEEeccCCCceEEEEEeCCCCCchhcC
Confidence            443  244443  4699999999999999887643222  233343 233 566664233689999999875        


Q ss_pred             cceEEeeccccceeEEEECCCCCEEEEEe-------CCCcEEEEEEcCCCcEE-EEEe--------C-CCcceeEEEeec
Q 020784          249 KRTKFIMAHDSRIACFALTQDGQLLATSS-------TKGTLVRIFNTLDGTLL-QEEC--------C-PSISAQSGLWLS  311 (321)
Q Consensus       249 ~~~~~l~~H~~~V~~vafspdg~~las~S-------~Dgt~IrIWd~~tg~~i-~~~~--------~-g~~~~~~~~s~d  311 (321)
                      +.+.++..|...+..|+|+|||++|++++       .+++ |+|||+.++++. ..+.        . +.......|++|
T Consensus       411 ~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  489 (543)
T 1nir_A          411 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  489 (543)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred             eEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence            34678999999999999999999999987       2778 999999999987 4442        1 233345588899


Q ss_pred             CceEEEe
Q 020784          312 SAWLRVL  318 (321)
Q Consensus       312 ~~~la~~  318 (321)
                      |++|.++
T Consensus       490 g~~~~~s  496 (543)
T 1nir_A          490 GDEVWFS  496 (543)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9998865

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=8.2e-17  Score=145.21  Aligned_cols=223  Identities=11%  Similarity=0.043  Sum_probs=162.2

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CcEEEEEecCCceeEEeeeecCC---------ceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGG---------GIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg-~~-~gv~vw~~~~~~~~~~~~~~~~~---------~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      .+.+++|++||++++.+ .. +.+.+||..+++....... +.+         ....+.++++++.++++..+     .+
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~  163 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVL-DDRKRTEEVRPLQPRELVADDATNTVYISGIG-----KE  163 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEES-CCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----SS
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEec-CCCccccccCCCCCceEEECCCCCEEEEEecC-----CC
Confidence            46789999999966544 43 4588999998887655554 111         15678889999888777633     35


Q ss_pred             CcEEEEeCCCCcEEEEEe-eCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCC--CCceEEEeeCCCce
Q 020784          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSL  229 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~--~~~~~~~s~~~d~~  229 (321)
                      +.|.+||..+++.+..+. ....+..+.|+++  .++++. ++.|.+||+.+++.+..+.....  ......+..++++.
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            889999999999888887 4445888889875  455554 46999999999999888875322  12233333344445


Q ss_pred             EEEeecCCCCcEEEEeeCCcce-EEeeccccceeEEEECCCCCEEE-EEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEE
Q 020784          230 VLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEECCPSISAQSG  307 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~~la-s~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~  307 (321)
                      .+++++..++.|.+||..++.. ..+..+.  ...++|+|+|+++. +...+++ |.+||+.+++.+.++..+.....+.
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~-v~~~d~~~~~~~~~~~~~~~~~~~~  320 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGK-VSVIDAKSYKVVKTFDTPTHPNSLA  320 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCe-EEEEECCCCeEEEEEecCCCCCeEE
Confidence            5554566778999999977653 3444333  36799999999554 4446888 9999999999999998777667778


Q ss_pred             EeecCceEEEe
Q 020784          308 LWLSSAWLRVL  318 (321)
Q Consensus       308 ~s~d~~~la~~  318 (321)
                      +++||++|.++
T Consensus       321 ~s~dg~~l~v~  331 (353)
T 3vgz_A          321 LSADGKTLYVS  331 (353)
T ss_dssp             ECTTSCEEEEE
T ss_pred             EcCCCCEEEEE
Confidence            99999988775

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.79  E-value=1.3e-16  Score=143.10  Aligned_cols=216  Identities=10%  Similarity=0.102  Sum_probs=153.5

Q ss_pred             EEEcCCCCE-EEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcE
Q 020784           91 ISFNQDHGC-FAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (321)
Q Consensus        91 v~fs~dg~~-lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~  168 (321)
                      ..|.+++.+ +++++. +.|++||.++++....... +.... .++++++++.+++++.+      ++.|.+||..+++.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL-GYDFV-DTAITSDCSNVVVTSDF------CQTLVQIETQLEPP   74 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC-CCCEE-EEEECSSSCEEEEEEST------TCEEEEEECSSSSC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc-cCCcc-eEEEcCCCCEEEEEeCC------CCeEEEEECCCCce
Confidence            346666665 556655 5588999999887665554 33445 88889999877777642      57999999999987


Q ss_pred             -EEEEeeCCceeE-EEEeCC--eEEEEECC----EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCc
Q 020784          169 -IGELSFRSEVRS-VKLRRD--RIIVVLEQ----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       169 -~~~~~~~~~v~~-v~~~~~--~~~~~~~~----~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                       ...+.....+.. +.|+++  .+++...+    .|++||+.+++.+..+..+..+   ..+..++|+..+++++..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDA---VGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTE---EEEEECTTSSCEEEEEETTTT
T ss_pred             eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCc---cceEECCCCCEEEEEecCCCc
Confidence             667776666666 899876  45533333    8999999999998888765433   344445555544444666678


Q ss_pred             -EEEEeeCCcc-e----EEeeccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCcE---EEEEeCCCcceeEEEee
Q 020784          241 -VRVEHYASKR-T----KFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTL---LQEECCPSISAQSGLWL  310 (321)
Q Consensus       241 -V~i~d~~~~~-~----~~l~~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~tg~~---i~~~~~g~~~~~~~~s~  310 (321)
                       |.+|++.... +    .....+...+..++|+|+|++| +++..+++ |++||+.+++.   +.++..+.....+.+++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp  230 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGTNNLPGTIVVSR  230 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEECSSCCCCEEECT
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccCCCCCceEEECC
Confidence             9999976422 2    1222345568999999999955 44556777 99999999998   88888776677789999


Q ss_pred             cCceEEEe
Q 020784          311 SSAWLRVL  318 (321)
Q Consensus       311 d~~~la~~  318 (321)
                      ||++|.++
T Consensus       231 dg~~l~v~  238 (331)
T 3u4y_A          231 DGSTVYVL  238 (331)
T ss_dssp             TSSEEEEE
T ss_pred             CCCEEEEE
Confidence            99988775

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.79  E-value=2.7e-16  Score=140.94  Aligned_cols=221  Identities=10%  Similarity=0.074  Sum_probs=153.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CcEEEEEecCCce-eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCC--cEEE
Q 020784           86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN--KVMI  160 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~--~v~i  160 (321)
                      ..+ +++|+|||++|++++.  +.+.+||.++.+. ...... +......+.++++++.++ ++..     .++  .|.+
T Consensus        41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~~-----~~~~~~i~v  112 (331)
T 3u4y_A           41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-GQSSMADVDITPDDQFAV-TVTG-----LNHPFNMQS  112 (331)
T ss_dssp             CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-CSSCCCCEEECTTSSEEE-ECCC-----SSSSCEEEE
T ss_pred             Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-CCCCccceEECCCCCEEE-EecC-----CCCcccEEE
Confidence            356 9999999997665544  4588999988876 444443 233444378899999888 4422     113  8999


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEeCC--eEEEE-EC-CE-EEEEEcCCcEEE-----EEEeccCCCCceEEEeeCCCceE
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLRRD--RIIVV-LE-QK-IFVYNFADLKLL-----HQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~-~~-~~-I~iwd~~~~~~~-----~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      ||..+++.+..+.....+..+.|+++  .++++ .+ +. |.+|++.....+     ..+..   ......+..++|+..
T Consensus       113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~spdg~~  189 (331)
T 3u4y_A          113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG---GTRPFNITFTPDGNF  189 (331)
T ss_dssp             EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS---SSSEEEEEECTTSSE
T ss_pred             EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC---CCCccceEECCCCCE
Confidence            99999999888888778899999987  35555 33 56 999998653222     12211   122344555566675


Q ss_pred             EEeecCCCCcEEEEeeCCcce----EEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCcE--EEEEeCC---
Q 020784          231 LVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL--LQEECCP---  300 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~----~~l~~H~~~V~~vafspdg~~las~S-~Dgt~IrIWd~~tg~~--i~~~~~g---  300 (321)
                      +++++..++.|.+||..++..    ..+. +...+..++|+|||++|+.++ .++. |.+||+.++++  +.++..+   
T Consensus       190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          190 AFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             EEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCC
T ss_pred             EEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeeccccccccc
Confidence            555577889999999886554    3444 447789999999999766554 4666 99999999988  5655433   


Q ss_pred             -Ccc----eeEEEeecCceEEEee
Q 020784          301 -SIS----AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       301 -~~~----~~~~~s~d~~~la~~~  319 (321)
                       ...    ..+.+++||++|.++.
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~  291 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISA  291 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEE
T ss_pred             CCCCcccccceEECCCCCEEEEec
Confidence             111    1258899999987753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.79  E-value=1.2e-16  Score=154.51  Aligned_cols=199  Identities=12%  Similarity=0.089  Sum_probs=153.3

Q ss_pred             EEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC--CCCcE
Q 020784           92 SFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD--HQSRC  168 (321)
Q Consensus        92 ~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~--~~~~~  168 (321)
                      .|+|+++++++++.+ .|.+||..+++.+.....  +..+..+.++++++.+++++       .|++|++||+  .++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~~~~~v~~spdg~~l~v~~-------~d~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIG-------RDARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--STTEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--CcccceEEECCCCCEEEEEC-------CCCeEEEEECcCCCCcE
Confidence            489999999988875 588999999988766653  34477888999999999888       5699999999  88999


Q ss_pred             EEEEeeCCceeEEEEeC----C--eEEEEE--CCEEEEEEcCCcEEEEEEeccCC---------CCceEEEeeCCCceEE
Q 020784          169 IGELSFRSEVRSVKLRR----D--RIIVVL--EQKIFVYNFADLKLLHQIETIAN---------PKGLCAVSQGVGSLVL  231 (321)
Q Consensus       169 ~~~~~~~~~v~~v~~~~----~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~---------~~~~~~~s~~~d~~~l  231 (321)
                      +.++.....+..+.|++    +  .++++.  +++|.+||..++++++++..+..         ...+.++...+++..+
T Consensus       215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            88888877899999997    4  455553  58999999999999999875321         1123344444444444


Q ss_pred             EeecCCCCcEEEEeeCCcc-eE-EeeccccceeEEEECCCCCEEEEE-eCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          232 VCPGLQKGQVRVEHYASKR-TK-FIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~-~~-~l~~H~~~V~~vafspdg~~las~-S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      +++...+|.|.+||+.... +. ....+...++.++|+|+|++|+++ ..+++ |+|||+.+|+++.++..+
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g  365 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVG  365 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECS
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccC
Confidence            4468889999999987643 22 223467789999999999976655 45788 999999999999998765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=4.5e-17  Score=145.62  Aligned_cols=225  Identities=8%  Similarity=-0.039  Sum_probs=161.8

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCceeEEeeeec----CCceEEEEEecCCCeEEEEeCCC---CCCC--CC
Q 020784           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFER----GGGIGVVEMLFRCNILALVGGGP---DPQY--PL  155 (321)
Q Consensus        87 ~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~~~~~sg~~---~~~~--~d  155 (321)
                      .+.+++|+|||++|+ ++.. +.|.+||+.+++.+......+    ...+..+.++++++.++++..+.   ...+  .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            367899999998765 4544 458899999887765544311    01455678888888887774110   0000  14


Q ss_pred             CcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +.|.+||..+++.+..+.....+..+.|+++.  ++++ ++.|++||+.+++.+..+..+.... ...++++  +..+++
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~s~d--g~~l~~  190 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPD--VLAVWN  190 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTT-TTBCCCB--CCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCC-CceeCCC--ccEEee
Confidence            89999999999888888777778889998764  4444 7899999999999888877654222 1244444  444443


Q ss_pred             ecCCCCc-----------------------EEEEeeCCcceE--EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          234 PGLQKGQ-----------------------VRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       234 sGs~dg~-----------------------V~i~d~~~~~~~--~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      ++..++.                       |.+||..++...  .+..|...+.+++|+|||++|+++  ++. |++||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~  267 (337)
T 1pby_B          191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDL  267 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEET
T ss_pred             eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEEC
Confidence            3444443                       567888776543  455677789999999999999988  688 999999


Q ss_pred             CCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          289 LDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       289 ~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      .+++.+..+..+.....+.+++||++|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          268 EKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             TTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             CCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence            999999988877767777889999998875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=3.7e-16  Score=141.35  Aligned_cols=226  Identities=14%  Similarity=0.141  Sum_probs=147.8

Q ss_pred             CCeEEEEEcCCCCEEEEEc---CCcEEEEEecCCceeEEeee-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           86 PTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~---~~gv~vw~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ..+..++|+|||++++++.   ++.|.+|++++++....... .+......++++++++.+++++.      .+++|++|
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~------~~~~v~v~  113 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY------HKGTAEVM  113 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC------CCCEEEEE
Confidence            3566799999999444443   24588999987664322221 13566778899999998887763      35899999


Q ss_pred             eCC-CCc--EEEEEeeC----------CceeEEEEeCCe-EEEEE--CCEEEEEEcC-CcEEEE--EEeccCCCCceEEE
Q 020784          162 DDH-QSR--CIGELSFR----------SEVRSVKLRRDR-IIVVL--EQKIFVYNFA-DLKLLH--QIETIANPKGLCAV  222 (321)
Q Consensus       162 D~~-~~~--~~~~~~~~----------~~v~~v~~~~~~-~~~~~--~~~I~iwd~~-~~~~~~--~l~~~~~~~~~~~~  222 (321)
                      |+. ++.  .+..+...          ..+.++.|+++. ++++.  ++.|++|++. ++++..  .+..... .....+
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~p~~~  192 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-FGPRHL  192 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-CCEEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-CCCceE
Confidence            996 333  23333322          137789998764 44443  4699999998 554332  2222211 123334


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCC--cceE---Eeeccc------cceeEEEECCCCCEE-EEEeCCCcEEEEEEcC-
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAHD------SRIACFALTQDGQLL-ATSSTKGTLVRIFNTL-  289 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~--~~~~---~l~~H~------~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~-  289 (321)
                      .+++|+.++++++..++.|.+|++..  +.+.   .+..+.      ..+..++|+|||++| ++...+++ |+||++. 
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~  271 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTA  271 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECG
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECC
Confidence            45556676655678889999998764  3322   232222      458999999999977 56666888 9999997 


Q ss_pred             --CCcEEEEEeC-CCcceeEEEeecCceEEEee
Q 020784          290 --DGTLLQEECC-PSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       290 --tg~~i~~~~~-g~~~~~~~~s~d~~~la~~~  319 (321)
                        +.+.+.++.. +.....+.+++||++|+++.
T Consensus       272 ~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          272 DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred             CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence              3355666655 33456678999999998864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.77  E-value=1.6e-17  Score=165.39  Aligned_cols=220  Identities=12%  Similarity=0.008  Sum_probs=156.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-C------cEEEEEecCCceeEEeeeecCC------------------------ceEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTD-H------GFRIYNCDPFREIFRRDFERGG------------------------GIGVV  133 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~-~------gv~vw~~~~~~~~~~~~~~~~~------------------------~v~~v  133 (321)
                      ...|.+++|+|||++|++++. +      .+++||+++++....... +..                        .+..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS-KVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG-GGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch-hhcccccccccchhhhhhhhhhhccccCccee
Confidence            447999999999999998876 4      478999988876444332 122                        25678


Q ss_pred             EEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC---cEEEEEeeCCceeEEEEeCCe--EEEEECCEEEEEEcCCcEEEE
Q 020784          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDR--IIVVLEQKIFVYNFADLKLLH  208 (321)
Q Consensus       134 ~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~I~iwd~~~~~~~~  208 (321)
                      +++++++.+++++        .++|++||+.++   +......+...+..+.|+++.  ++.+.++.|++||+.+++..+
T Consensus       115 ~~SpDg~~l~~~~--------~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          115 QWSPDAQRLLFPL--------GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EECTTSSEEEEEE--------TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEe--------CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence            8999999999887        278999999988   544333344578999999864  666678899999999887655


Q ss_pred             EEeccCCC----------------CceEEEeeCCCceEEEeecCCCC---------------------------------
Q 020784          209 QIETIANP----------------KGLCAVSQGVGSLVLVCPGLQKG---------------------------------  239 (321)
Q Consensus       209 ~l~~~~~~----------------~~~~~~s~~~d~~~la~sGs~dg---------------------------------  239 (321)
                      ....+...                ...+++++  |+..|++ ++.|+                                 
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~-~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAY-ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEE-EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECC--CCCEEEE-EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            44333221                13345554  5576765 33332                                 


Q ss_pred             cEEEEeeCC-cceEEee---ccccceeEEEECCCCCEEEEEeC-----CCcEEEEEEcCCCcEEEEEeCCCc-----cee
Q 020784          240 QVRVEHYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSST-----KGTLVRIFNTLDGTLLQEECCPSI-----SAQ  305 (321)
Q Consensus       240 ~V~i~d~~~-~~~~~l~---~H~~~V~~vafspdg~~las~S~-----Dgt~IrIWd~~tg~~i~~~~~g~~-----~~~  305 (321)
                      .|.+||..+ +....+.   .|...+.+++| |||++|+.++.     +.. |++||+.+|++...+.....     ...
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence            666788877 6654443   58889999999 99999997764     456 99999999998776643221     124


Q ss_pred             EEEeecCceEEEe
Q 020784          306 SGLWLSSAWLRVL  318 (321)
Q Consensus       306 ~~~s~d~~~la~~  318 (321)
                      ..+++||++++++
T Consensus       342 ~~~spdg~~~~~~  354 (741)
T 2ecf_A          342 LRFLDDGSILWSS  354 (741)
T ss_dssp             CEECTTSCEEEEE
T ss_pred             eEECCCCeEEEEe
Confidence            5889999976653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.76  E-value=5.1e-18  Score=168.43  Aligned_cols=229  Identities=7%  Similarity=-0.030  Sum_probs=160.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCC---ceEEEEEecCCCeEEEEeCCCCC--CCCCCcEEEE
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGGGPDP--QYPLNKVMIW  161 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~---~v~~v~~~~~~~~~~~~sg~~~~--~~~d~~v~iW  161 (321)
                      .+.+++|+|||++++++.++.+++||..+++....... |..   .+..++++++++.+++++.....  ...++.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            46679999999988875556699999998876544432 222   37889999999999888743210  0124889999


Q ss_pred             eCCCCcEEEEEeeC-C---ceeEEEEeCC--eEEEEECCEEEEEEcCCcEEEEEEeccCCCC----------------ce
Q 020784          162 DDHQSRCIGELSFR-S---EVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPK----------------GL  219 (321)
Q Consensus       162 D~~~~~~~~~~~~~-~---~v~~v~~~~~--~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~----------------~~  219 (321)
                      |+.+++. ..+... .   .+..+.|+++  .++.+.++.|++||+.+++..+....+...+                ..
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9998876 333322 1   3778889886  4677778899999998887766555433322                11


Q ss_pred             EEEeeCCCceEEEeecCCC---------------------------------CcEEEEeeCCcc-eEEeecc------cc
Q 020784          220 CAVSQGVGSLVLVCPGLQK---------------------------------GQVRVEHYASKR-TKFIMAH------DS  259 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~d---------------------------------g~V~i~d~~~~~-~~~l~~H------~~  259 (321)
                      .++.+.+|+..|++....+                                 ..|.+||..++. ...+..|      ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            3455566667777633221                                 167889988766 3566654      67


Q ss_pred             ceeEEEECCCCCEEEEEeCC----CcEEEEEEcCCCcEEEEEeCCCcc------eeEEEeecCceEEEe
Q 020784          260 RIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTLLQEECCPSIS------AQSGLWLSSAWLRVL  318 (321)
Q Consensus       260 ~V~~vafspdg~~las~S~D----gt~IrIWd~~tg~~i~~~~~g~~~------~~~~~s~d~~~la~~  318 (321)
                      .|.+++|||||++|++.+.+    .. |++||+.+|++...+...+..      ....+++||++|+++
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            89999999999999877543    45 999999999987665432221      245889999998875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.74  E-value=5.7e-17  Score=152.48  Aligned_cols=197  Identities=14%  Similarity=0.025  Sum_probs=138.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCc----------eeEE----eeeecCCceEEEEEecCCCeEEEE--eCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR----------EIFR----RDFERGGGIGVVEMLFRCNILALV--GGGPD  150 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~----------~~~~----~~~~~~~~v~~v~~~~~~~~~~~~--sg~~~  150 (321)
                      .++.+++++++.+|++|+.++++||+.....          ....    ..+.+.+.+..++|+++++.++++  +++  
T Consensus        38 ~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs--  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE--  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT--
T ss_pred             CccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC--
Confidence            5788999999999999999999998753210          1100    111135579999999999988863  333  


Q ss_pred             CCCCCCcEEEEeCCCC--------cE---EEEEe-eCCceeEEEEeCC---eEEEEE-CCEEEEEEcCCcEEEEEEeccC
Q 020784          151 PQYPLNKVMIWDDHQS--------RC---IGELS-FRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIA  214 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~--------~~---~~~~~-~~~~v~~v~~~~~---~~~~~~-~~~I~iwd~~~~~~~~~l~~~~  214 (321)
                         .|++|+|||++++        +.   +..+. +...|.+++|+++   .+++++ +++|++||+++++.+.....|.
T Consensus       116 ---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~  192 (434)
T 2oit_A          116 ---YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST  192 (434)
T ss_dssp             ---TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred             ---CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence               5799999998654        22   22222 3457999999975   355554 5799999999887766666655


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeecc-------ccceeEEEECCCCCEEEEEe-CCCc-----
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-------DSRIACFALTQDGQLLATSS-TKGT-----  281 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H-------~~~V~~vafspdg~~las~S-~Dgt-----  281 (321)
                      ..+..+++  ++++.+|+ +|+.||.|++||........+..|       ...|.+++|++++.++++.+ .||.     
T Consensus       193 ~~v~~v~w--spdg~~la-sgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~  269 (434)
T 2oit_A          193 VAVTSVCW--SPKGKQLA-VGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP  269 (434)
T ss_dssp             GCEEEEEE--CTTSSCEE-EEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred             CceeEEEE--cCCCCEEE-EEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence            54444444  55667888 489999999999874444455444       33899999999998876543 3322     


Q ss_pred             EEEEEEcCCC
Q 020784          282 LVRIFNTLDG  291 (321)
Q Consensus       282 ~IrIWd~~tg  291 (321)
                      .+++|++.+.
T Consensus       270 ~v~i~~l~~~  279 (434)
T 2oit_A          270 DVVMALLPKK  279 (434)
T ss_dssp             EEEEEECCCT
T ss_pred             ceEEEEeccC
Confidence            2889999865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=4.3e-16  Score=140.06  Aligned_cols=211  Identities=8%  Similarity=-0.014  Sum_probs=150.2

Q ss_pred             EEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCC--ceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           90 HISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGG--GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      .++++++++++++++. +.|.+||..+++.......  ..  ....++++++++.++++..      .++.|.+||..++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~   75 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTC   75 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCC
Confidence            4568888998888876 5588999998877655554  33  4667788888887766653      3589999999999


Q ss_pred             cEEEEEeeCC-------ceeEEEEeCC--eEEEEE-------------CCEEEEEEcCCc---EEEEEEeccCCCCceEE
Q 020784          167 RCIGELSFRS-------EVRSVKLRRD--RIIVVL-------------EQKIFVYNFADL---KLLHQIETIANPKGLCA  221 (321)
Q Consensus       167 ~~~~~~~~~~-------~v~~v~~~~~--~~~~~~-------------~~~I~iwd~~~~---~~~~~l~~~~~~~~~~~  221 (321)
                      +.+..+....       .+..+.|+++  .++++.             .+.|.+||+.++   +.+..+..+. ....++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~  154 (349)
T 1jmx_B           76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMR  154 (349)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEE
T ss_pred             cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-ccccee
Confidence            8887776533       2778899876  455554             379999999874   3334444332 233445


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcce-EEeecc-------------------------------------------
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH-------------------------------------------  257 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~l~~H-------------------------------------------  257 (321)
                      +++  |+.+++  ++  +.|.+||..++.. ..+..+                                           
T Consensus       155 ~s~--dg~l~~--~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          155 AAD--DGSLYV--AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             ECT--TSCEEE--ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             ECC--CCcEEE--cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            555  456444  23  3488898766543 233222                                           


Q ss_pred             -------------------------ccceeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeec
Q 020784          258 -------------------------DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLS  311 (321)
Q Consensus       258 -------------------------~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d  311 (321)
                                               ...+.+++|+| +|++|+++  ++. |++||+.+++.+.++..+.....+.+++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~~~~~~~~~s~d  305 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANLDHTYYCVAFDKK  305 (349)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEECSSCCCEEEECSS
T ss_pred             cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcCCCCccceEECCC
Confidence                                     12456788889 99999988  778 99999999999998887777777889999


Q ss_pred             CceEEEe
Q 020784          312 SAWLRVL  318 (321)
Q Consensus       312 ~~~la~~  318 (321)
                      |++|+++
T Consensus       306 g~~l~~~  312 (349)
T 1jmx_B          306 GDKLYLG  312 (349)
T ss_dssp             SSCEEEE
T ss_pred             CCEEEEe
Confidence            9998774

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.73  E-value=1.2e-16  Score=142.74  Aligned_cols=199  Identities=8%  Similarity=0.015  Sum_probs=141.3

Q ss_pred             CeEEEEEcCCCCEEEEEc-------------CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGT-------------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~-------------~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      .+.+++|+|||++|+++.             ++.+.+||+.+.+.......  ...+..+.++++++.+++++       
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~-------  153 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGLG-------  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEES-------
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEeC-------
Confidence            566899999999988874             46688999988876555443  44566778899998887763       


Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC--C-----------------------EEEEEEcCCcEE
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE--Q-----------------------KIFVYNFADLKL  206 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~--~-----------------------~I~iwd~~~~~~  206 (321)
                        +.|.+||..+++.+..+........+.|+++.  +++...  +                       .|.+||+.+++.
T Consensus       154 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          154 --RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             --SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             --CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence              67999999999887776654311122344432  221111  1                       589999998877


Q ss_pred             EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEE
Q 020784          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (321)
Q Consensus       207 ~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrI  285 (321)
                      . .+...........+..++|+.++++ +  ++.|.+||..++... .+. ....+.+++|+|+|++|++++.|+. |+|
T Consensus       232 ~-~~~~~~~~~~~~~~~~s~dg~~l~~-~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-i~v  305 (337)
T 1pby_B          232 A-MREVRIMDVFYFSTAVNPAKTRAFG-A--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD-LAA  305 (337)
T ss_dssp             E-EEEEEECSSCEEEEEECTTSSEEEE-E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSE-EEE
T ss_pred             e-EeecCCCCCceeeEEECCCCCEEEE-e--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCCCc-EEE
Confidence            5 4433222233444555566677775 3  689999999876644 443 3456899999999999999998999 999


Q ss_pred             EEcCCCcEEEEEeCCCc
Q 020784          286 FNTLDGTLLQEECCPSI  302 (321)
Q Consensus       286 Wd~~tg~~i~~~~~g~~  302 (321)
                      ||+.+++.+.++..+..
T Consensus       306 ~d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          306 YDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EETTTCCEEEEEECGGG
T ss_pred             EECcCCcEEEEEEcCCC
Confidence            99999999999876533

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=3.8e-15  Score=135.55  Aligned_cols=226  Identities=12%  Similarity=0.062  Sum_probs=145.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-----cEEEEEecCC--ceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDH-----GFRIYNCDPF--REIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~-----gv~vw~~~~~--~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      +...+..++|+|||++|++++.+     .+.+|+++..  +........ +......+.+  +++.++++..      .+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~------~~  119 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY------SG  119 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET------TT
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC------CC
Confidence            44567789999999999888773     5889998763  332222221 2233444454  7777777663      35


Q ss_pred             CcEEEEeCCCCcEEE----EEee-----------CCceeEEEEeCCe--EEEEE--CCEEEEEEcCCcE-------EE--
Q 020784          156 NKVMIWDDHQSRCIG----ELSF-----------RSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLK-------LL--  207 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~----~~~~-----------~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~-------~~--  207 (321)
                      ++|.+||+.....+.    .+.+           ...+.++.|+++.  ++++.  ++.|++|++....       +.  
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            899999987543221    1111           1134778998864  55554  4699999886432       11  


Q ss_pred             ---EEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE---Ee---eccccceeEEEECCCCCEEEEEeC
Q 020784          208 ---HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FI---MAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       208 ---~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~---~l---~~H~~~V~~vafspdg~~las~S~  278 (321)
                         ..+... .......+.+++|+.++++++..++.|.+|++..+.+.   .+   ..+...+..++|+|||++|+.+..
T Consensus       200 ~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          200 GTPEAFKVA-PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             ccccceecC-CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence               122221 11223344555666766655667899999998765432   22   234456789999999998866655


Q ss_pred             C--CcEEEEEEcC--CCc--EEEEEeCCCcceeEEEeecCceEEEee
Q 020784          279 K--GTLVRIFNTL--DGT--LLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       279 D--gt~IrIWd~~--tg~--~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      +  ++ |+||++.  +|+  .+..+..+.....+.+++||+||+++.
T Consensus       279 ~~~~~-i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          279 LKADG-VAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             SSSCE-EEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred             CCCCE-EEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE
Confidence            4  77 9999995  566  455565555566778999999998864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.73  E-value=2.5e-16  Score=156.00  Aligned_cols=221  Identities=12%  Similarity=0.039  Sum_probs=155.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ..|.+++|+|| ++++.+.+..+++||+.+++......  +.+.+..++++++++.++++.        +++|++||+.+
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~SpdG~~la~~~--------~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFD--TNEETASLDFSPVGDRVAYVR--------NHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEEC--CTTCCTTCEECTTSSEEEEEE--------TTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccC--CcccccCCcCCCCCCEEEEEE--------CCeEEEEecCc
Confidence            47999999999 66766677889999998876543332  355677789999999998864        58999999988


Q ss_pred             -----CcEEEEEeeCCc---------------eeEEEEeCCe--EEEEE-------------------------------
Q 020784          166 -----SRCIGELSFRSE---------------VRSVKLRRDR--IIVVL-------------------------------  192 (321)
Q Consensus       166 -----~~~~~~~~~~~~---------------v~~v~~~~~~--~~~~~-------------------------------  192 (321)
                           ++..........               +.++.|+++.  ++.+.                               
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 776543333222               4788998864  55443                               


Q ss_pred             --C-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC-----cEEEEeeCCc-ceEEeec--ccc--
Q 020784          193 --E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-----QVRVEHYASK-RTKFIMA--HDS--  259 (321)
Q Consensus       193 --~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg-----~V~i~d~~~~-~~~~l~~--H~~--  259 (321)
                        . ..|++||+.+++.............+..+.+.+|+..|++ ++.++     .|.+||..++ ....+..  +..  
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV-AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE-EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE-EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence              1 4799999998876544322222233445555667777775 34443     7888998877 5544432  222  


Q ss_pred             -ceeEEEECC--CCCEEEEEeCCCcEEEEEEcC-CCcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          260 -RIACFALTQ--DGQLLATSSTKGTLVRIFNTL-DGTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       260 -~V~~vafsp--dg~~las~S~Dgt~IrIWd~~-tg~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                       .+.+++|+|  ||++|++++.||. ++||++. +++.+..+..+.....  ..+++||++|+++.
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence             357899999  9999999999999 9999987 7888888855443332  57889999887653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=2.1e-16  Score=153.41  Aligned_cols=216  Identities=7%  Similarity=-0.049  Sum_probs=141.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Cc-EEEEEecCCceeEEeeeecC-CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~g-v~vw~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .+|++++|+|||++||.+++ ++ ++||+++.++.. .... +. ..+..+.|+++ ..+++...+.    .+...+||.
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~-~~~~~~~~~~~spd-~~l~~~~~~~----g~~~~~l~~   94 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNR-EPINSVLDPHYGVG-RVILVRDVSK----GAEQHALFK   94 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCS-SCCSEECEECTTCS-EEEEEEECST----TSCCEEEEE
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeec-ccccccccccCCCC-eEEEEeccCC----CCcceEEEE
Confidence            47999999999999998875 54 779999765542 2221 22 35666666666 4444444211    134456655


Q ss_pred             CCC---CcEEEEEeeCC--ceeEEEEeCCeEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          163 DHQ---SRCIGELSFRS--EVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       163 ~~~---~~~~~~~~~~~--~v~~v~~~~~~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +..   +... .+....  .+.++.++++.++.+  ..+.+.+||+.+++..+....+.   ...++++  |+..+++ +
T Consensus        95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~sp--DG~~la~-~  167 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDI--RGDLIAG-L  167 (582)
T ss_dssp             EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEE--ETTEEEE-E
T ss_pred             EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECC--CCCEEEE-E
Confidence            432   2222 332222  234455556555444  34566799999887655444332   4555666  5577774 3


Q ss_pred             CCC----CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEEeCCCcc--eeEE
Q 020784          236 LQK----GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEECCPSIS--AQSG  307 (321)
Q Consensus       236 s~d----g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg--t~IrIWd~~tg~~i~~~~~g~~~--~~~~  307 (321)
                      +.+    +.|++||..++....+..|...+..++|||||++||+++.|+  . |++||+.+|++. .+ .++..  ....
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~-~~~~~~~~~~~  244 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DL-ELPSKDFSSYR  244 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-EC-CCSCSHHHHHC
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-Ec-cCCCcChhhhh
Confidence            434    578889988888888999999999999999999999888888  7 999999999987 44 34332  1234


Q ss_pred             --------EeecCceEEEe
Q 020784          308 --------LWLSSAWLRVL  318 (321)
Q Consensus       308 --------~s~d~~~la~~  318 (321)
                              +++||+.++.+
T Consensus       245 ~~~~~~~~~spdg~~~~~~  263 (582)
T 3o4h_A          245 PTAITWLGYLPDGRLAVVA  263 (582)
T ss_dssp             CSEEEEEEECTTSCEEEEE
T ss_pred             hccccceeEcCCCcEEEEE
Confidence                    89999555544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.72  E-value=4.7e-15  Score=132.73  Aligned_cols=216  Identities=9%  Similarity=0.079  Sum_probs=141.9

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Cc-EEEEEecCC---ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           87 TLLHISFNQDHGCFAAGTD-HG-FRIYNCDPF---REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~g-v~vw~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .+.+++|+|||++|++++. ++ +.+|++..+   +......  ....+..++++++++.+++++.      .++.|++|
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~  156 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPAL------KQDRICLF  156 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEG------GGTEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecC------CCCEEEEE
Confidence            6889999999998876654 44 889999532   2222222  2345777889999987776652      25889999


Q ss_pred             eCCC-CcEEE----EEee--CCceeEEEEeCCe--EEEEE--CCEEEEEEcCC--cEE--EEEEeccC----CCCceEEE
Q 020784          162 DDHQ-SRCIG----ELSF--RSEVRSVKLRRDR--IIVVL--EQKIFVYNFAD--LKL--LHQIETIA----NPKGLCAV  222 (321)
Q Consensus       162 D~~~-~~~~~----~~~~--~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~--~~~--~~~l~~~~----~~~~~~~~  222 (321)
                      |+.+ ++...    .+..  ...+..+.|+++.  ++++.  ++.|++|++..  ++.  +..+....    .......+
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            9987 65432    2222  2367889998764  55554  46999999943  332  33333211    11233345


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeC--Ccc---eEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEE--EcCCCc--
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYA--SKR---TKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIF--NTLDGT--  292 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~--~~~---~~~l~~H~~~V~~vafspdg~~las~S-~Dgt~IrIW--d~~tg~--  292 (321)
                      ..++++..|++++..++.|.+|++.  .+.   +..+..+.. +.+++|+|+|++|++++ .|+. |+||  |..+|+  
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~-v~v~~~d~~~g~~~  314 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGLLH  314 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTEEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe-EEEEEEcCCCceee
Confidence            5566666666567789999999987  222   224444444 99999999999888887 5777 9999  555774  


Q ss_pred             EEEEEeCCCcceeEEEeecC
Q 020784          293 LLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       293 ~i~~~~~g~~~~~~~~s~d~  312 (321)
                      .+.++..+.....+.+..+.
T Consensus       315 ~~~~~~~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          315 EKGRYAVGQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEEECSSSCCEEEEEEEC
T ss_pred             EccccccCCCCeeEEEEccc
Confidence            45666666555566665543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=1e-15  Score=137.63  Aligned_cols=209  Identities=9%  Similarity=0.018  Sum_probs=144.2

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCceeEEeeeec-----CCceEEEEEecCCCeEEEEeCC-----CCCCCC
Q 020784           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFER-----GGGIGVVEMLFRCNILALVGGG-----PDPQYP  154 (321)
Q Consensus        87 ~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~~~~sg~-----~~~~~~  154 (321)
                      .+..++|+|||++++ ++.. +.|.+||+.+++........+     ...+..+.++++++.++++...     +.....
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            467899999998665 4444 458899999887765554311     1125667888999888877621     000001


Q ss_pred             CCcEEEEeCCCCc---EEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCC---------------
Q 020784          155 LNKVMIWDDHQSR---CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP---------------  216 (321)
Q Consensus       155 d~~v~iWD~~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~---------------  216 (321)
                      ++.|.+||+.+++   .+..+.....+.++.|+++..+.+.++.|++||+.+++.+..+..+...               
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  203 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence            3789999998844   3345555567888899876534445667999999998888777543200               


Q ss_pred             ---------------------------------------------------CceEEEeeCC-CceEEEeecCCCCcEEEE
Q 020784          217 ---------------------------------------------------KGLCAVSQGV-GSLVLVCPGLQKGQVRVE  244 (321)
Q Consensus       217 ---------------------------------------------------~~~~~~s~~~-d~~~la~sGs~dg~V~i~  244 (321)
                                                                         .....+..++ |+.++++ +  ++.|.+|
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~-~--~~~v~~~  280 (349)
T 1jmx_B          204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG-V--LNRLAKY  280 (349)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE-E--ESEEEEE
T ss_pred             CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE-E--cCeEEEE
Confidence                                                               0011222335 6666664 3  7899999


Q ss_pred             eeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          245 HYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       245 d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      |+.++... .+. +...+.+++|+|+|++|++++.+++ |+|||+.+++++.++..+
T Consensus       281 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          281 DLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEECS
T ss_pred             ECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCe-EEEEeccccceeeeeecC
Confidence            99877654 443 4456889999999998888888988 999999999999988765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.72  E-value=3.7e-16  Score=155.54  Aligned_cols=229  Identities=7%  Similarity=-0.063  Sum_probs=157.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCc----------------eEEEEEecCCCeEEEEe
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG----------------IGVVEMLFRCNILALVG  146 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~----------------v~~v~~~~~~~~~~~~s  146 (321)
                      .+...+.+++|+|||++||.++++.|.+||+.+++....... +...                +..+.|+++++.+++++
T Consensus       149 ~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          149 HGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred             cCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccC-CccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence            345689999999999999999998899999988764322211 1111                35688999999998876


Q ss_pred             CCCCC--------------------------CCCCCcEEEEeCCC-CcEEEEEe---eCCceeEEEEeCC--eEEEEE--
Q 020784          147 GGPDP--------------------------QYPLNKVMIWDDHQ-SRCIGELS---FRSEVRSVKLRRD--RIIVVL--  192 (321)
Q Consensus       147 g~~~~--------------------------~~~d~~v~iWD~~~-~~~~~~~~---~~~~v~~v~~~~~--~~~~~~--  192 (321)
                      .....                          ......|.+||+.+ ++......   +...+..+.| ++  .+++..  
T Consensus       228 ~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~  306 (741)
T 2ecf_A          228 IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS  306 (741)
T ss_dssp             EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE
T ss_pred             EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEec
Confidence            22100                          00011788999988 77554331   3346788888 76  344432  


Q ss_pred             ----CCEEEEEEcCCcEEEEEEeccCC----CCceEEEeeCCCceEEEeecCCCCcEEEEeeC--CcceEEeecccccee
Q 020784          193 ----EQKIFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIA  262 (321)
Q Consensus       193 ----~~~I~iwd~~~~~~~~~l~~~~~----~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~l~~H~~~V~  262 (321)
                          +..|++||+.+++....+..+..    ....+++++  |+.+++ +++.+|.++||.+.  .+ ...+..|...|.
T Consensus       307 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dg~~~~-~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~  382 (741)
T 2ecf_A          307 RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD--DGSILW-SSERTGFQHLYRIDSKGK-AAALTHGNWSVD  382 (741)
T ss_dssp             TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT--TSCEEE-EECTTSSCEEEEECSSSC-EEESCCSSSCEE
T ss_pred             ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC--CCeEEE-EecCCCccEEEEEcCCCC-eeeeeecceEEE
Confidence                24899999999888777665432    223456665  446665 47788988887654  44 778888988898


Q ss_pred             EE-EECCCCCEEE-EEeCCC--cEEEEEEcCC-CcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          263 CF-ALTQDGQLLA-TSSTKG--TLVRIFNTLD-GTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       263 ~v-afspdg~~la-s~S~Dg--t~IrIWd~~t-g~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      ++ +|+|||++|+ +++.|+  + ++||++.. |+....+........+.+++||++|++.
T Consensus       383 ~~~~~s~dg~~l~~~~~~~~~~~-~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~  442 (741)
T 2ecf_A          383 ELLAVDEKAGLAYFRAGIESARE-SQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDS  442 (741)
T ss_dssp             EEEEEETTTTEEEEEECSSCTTC-BEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEE
T ss_pred             eEeEEeCCCCEEEEEEeCCCCce-EEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEE
Confidence            88 5999998775 455555  7 99999974 6666666543334456889999998875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=7.5e-15  Score=134.36  Aligned_cols=232  Identities=10%  Similarity=0.065  Sum_probs=144.8

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEec-CCceeEEeeeecCCceEEEEEecCCCeEEE-EeC-CCCCCC------CCCc
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILAL-VGG-GPDPQY------PLNK  157 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~sg-~~~~~~------~d~~  157 (321)
                      .+..++|+|||++|++++.+.+.+|+++ +++..........+....+.++++++.+.+ +.. +....+      .+++
T Consensus        41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~  120 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY  120 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred             CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence            5678999999999988877788999997 665433222210122334566777775332 221 000000      2588


Q ss_pred             EEEEeCC-CCcEEEEEe-----eCCceeEEEEeCCe--EEEEE--CCEEEEEEcC-CcEEE--EEEeccCCCCceEEEee
Q 020784          158 VMIWDDH-QSRCIGELS-----FRSEVRSVKLRRDR--IIVVL--EQKIFVYNFA-DLKLL--HQIETIANPKGLCAVSQ  224 (321)
Q Consensus       158 v~iWD~~-~~~~~~~~~-----~~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~-~~~~~--~~l~~~~~~~~~~~~s~  224 (321)
                      +++|++. +++....+.     ....+.++.|+++.  ++++.  ++.|++|++. ++++.  ..+...........+..
T Consensus       121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~  200 (365)
T 1jof_A          121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM  200 (365)
T ss_dssp             EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred             EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence            9999997 466554443     23478899999864  55553  3699999998 66653  33332111123444455


Q ss_pred             CCCceEEEeecCCCCcEEEEeeC--CcceE-------Eee----cccc------ceeEEE-ECCCCCEEEEEeCCC----
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYA--SKRTK-------FIM----AHDS------RIACFA-LTQDGQLLATSSTKG----  280 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~--~~~~~-------~l~----~H~~------~V~~va-fspdg~~las~S~Dg----  280 (321)
                      ++|+.++++.+..++.|.+|++.  ++.+.       .+.    +|..      .+..++ |+|||++|++++.+.    
T Consensus       201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~  280 (365)
T 1jof_A          201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL  280 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred             CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence            55667666545667899998764  33321       121    2333      589999 999999887765433    


Q ss_pred             --cEEEEEEcC-CCcEEEE---Ee-CCCcceeEEEee---cCceEEEee
Q 020784          281 --TLVRIFNTL-DGTLLQE---EC-CPSISAQSGLWL---SSAWLRVLR  319 (321)
Q Consensus       281 --t~IrIWd~~-tg~~i~~---~~-~g~~~~~~~~s~---d~~~la~~~  319 (321)
                        + |+||++. +|++...   .. .+.....+.+++   ||++|+++.
T Consensus       281 ~~~-i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          281 QGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             CCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             CCe-EEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence              6 9999996 7876542   22 233345568888   899998863

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.70  E-value=1.2e-15  Score=151.23  Aligned_cols=232  Identities=10%  Similarity=0.008  Sum_probs=155.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEecC-----CceeEEeeeecCCc--------------eEEEEEecCCCeEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP-----FREIFRRDFERGGG--------------IGVVEMLFRCNILAL  144 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~-----~~~~~~~~~~~~~~--------------v~~v~~~~~~~~~~~  144 (321)
                      +...+.+++|+|||++||.+.+..|.+|++.+     ++....... +...              +..+.|+++++.+++
T Consensus       119 ~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~  197 (706)
T 2z3z_A          119 TNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAF  197 (706)
T ss_dssp             CTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred             CcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccC-CCCCeEcccchhhhhcCCCceEEECCCCCEEEE
Confidence            44568889999999999998888899999988     654322221 1222              367889999999988


Q ss_pred             EeCCCC--------------------------CCCCCCcEEEEeCCCCcEEEEEe---eCCceeEEEEeCCe--EEEE-E
Q 020784          145 VGGGPD--------------------------PQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDR--IIVV-L  192 (321)
Q Consensus       145 ~sg~~~--------------------------~~~~d~~v~iWD~~~~~~~~~~~---~~~~v~~v~~~~~~--~~~~-~  192 (321)
                      ++-...                          ....+..|++||+.+++......   ....+..+.|+++.  ++++ .
T Consensus       198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  277 (706)
T 2z3z_A          198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV  277 (706)
T ss_dssp             EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe
Confidence            761000                          00024789999999887654332   22468899999864  4443 3


Q ss_pred             CC-----EEEEEEcCCcEEEEEEec--cCCC---CceEEEeeCCCceEEEeecCCCCcEEEEeeC--CcceEEeeccccc
Q 020784          193 EQ-----KIFVYNFADLKLLHQIET--IANP---KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSR  260 (321)
Q Consensus       193 ~~-----~I~iwd~~~~~~~~~l~~--~~~~---~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~--~~~~~~l~~H~~~  260 (321)
                      +.     .|++||+.+++....+..  +...   ...+++++..|+.+++ +++.+|.++||++.  .+.+..+..|...
T Consensus       278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~-~~~~~g~~~l~~~~~~~~~~~~l~~~~~~  356 (706)
T 2z3z_A          278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW-QSRRDGWNHLYLYDTTGRLIRQVTKGEWE  356 (706)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE-EECTTSSCEEEEEETTSCEEEECCCSSSC
T ss_pred             CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE-EEccCCccEEEEEECCCCEEEecCCCCeE
Confidence            33     899999998844444432  2111   2335665511557776 47788999998764  4556788888888


Q ss_pred             eeE-EEECCCCCEEEEEeCC-C---cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          261 IAC-FALTQDGQLLATSSTK-G---TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       261 V~~-vafspdg~~las~S~D-g---t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      |.+ ++|+|+|+.|+.++.+ +   ..|.+||+.+++ ...+..........+++||++|++.
T Consensus       357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEE
T ss_pred             EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEE
Confidence            887 8999999877665544 3   137778888877 3444333334456889999998775

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=3.3e-15  Score=130.33  Aligned_cols=199  Identities=9%  Similarity=-0.039  Sum_probs=141.6

Q ss_pred             CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC-CcEEEEEeeC--CceeEEE
Q 020784          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELSFR--SEVRSVK  182 (321)
Q Consensus       106 ~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~-~~~~~~~~~~--~~v~~v~  182 (321)
                      ..+++||+.+.+......  |.+.+..++++++++.+++.+        ++.|++||+.+ ++.......+  ..+.++.
T Consensus        22 ~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             EEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             eeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            348899998887654443  578899999999999888865        47899999998 8766555443  4678899


Q ss_pred             EeCCe--EEEEEC-----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEee--CCcceEE
Q 020784          183 LRRDR--IIVVLE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKF  253 (321)
Q Consensus       183 ~~~~~--~~~~~~-----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~--~~~~~~~  253 (321)
                      |+++.  ++.+..     ..|..|++.+++ ...+..+. .  ...+...+|+..+++++..++.++||++  ..+....
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~--~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-P--SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-S--EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-C--ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            98763  555551     255555655554 33443332 2  4444555666777766788899999875  3455677


Q ss_pred             eeccccceeEEEECCCCCEEEEEe-CCCcEEEEEEcC-CCcEEEEEeCCCc-ceeEEEeecCceEEEee
Q 020784          254 IMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL-DGTLLQEECCPSI-SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       254 l~~H~~~V~~vafspdg~~las~S-~Dgt~IrIWd~~-tg~~i~~~~~g~~-~~~~~~s~d~~~la~~~  319 (321)
                      +..|...+.+++|+|+|++|+.++ .|+. ++||++. .+..+..+..... .....+++||++|+++.
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence            888999999999999999888766 4888 9999986 5666666643322 22347789999998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.68  E-value=1.9e-15  Score=156.60  Aligned_cols=217  Identities=10%  Similarity=0.068  Sum_probs=156.8

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeee----------ecCCceEEEEEe-cCCCeEEEEeCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF----------ERGGGIGVVEML-FRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~----------~~~~~v~~v~~~-~~~~~~~~~sg~~~~~~~d  155 (321)
                      .+.+.+|+|||++|+.+.+..+.+|+.+..... ....          .|.+.+..+.++ +++..+++++        +
T Consensus       246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--------~  316 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--------R  316 (1045)
T ss_dssp             SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--------T
T ss_pred             CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE--------c
Confidence            466789999999999998888999998543332 2211          012257888999 9999888877        4


Q ss_pred             CcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCe--EEEEEC-CEEE-EEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          156 NKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVLE-QKIF-VYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--~~~~~~-~~I~-iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      +.|.+||...+.......+.. .+..+.|+ +.  ++.+.+ ..+. +||+.+++.. .+..+..  .+..+.+.+|+..
T Consensus       317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~--~~~~~~~SpDG~~  392 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLG--NVFAMGVDRNGKF  392 (1045)
T ss_dssp             TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCC--SEEEEEECTTSSE
T ss_pred             CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCcc--ceeeeEECCCCCE
Confidence            789999998887654333344 67888888 64  444454 4777 8898776643 3333333  3445555667788


Q ss_pred             EEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCC----------cEEEEEEcCCCcEEEEEeC
Q 020784          231 LVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKG----------TLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dg----------t~IrIWd~~tg~~i~~~~~  299 (321)
                      |++ ++.++.|++||+.++... .+.+|...|.+++|||||++||+++.++          + |++||+.+++ +..+..
T Consensus       393 la~-~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~-i~l~d~~~g~-~~~l~~  469 (1045)
T 1k32_A          393 AVV-ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA-IHVYDMEGRK-IFAATT  469 (1045)
T ss_dssp             EEE-EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE-EEEEETTTTE-EEECSC
T ss_pred             EEE-ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe-EEEEECCCCc-EEEeeC
Confidence            885 778899999999887755 4558999999999999999999988755          6 9999999988 455533


Q ss_pred             CCc-ceeEEEeecCceEEEee
Q 020784          300 PSI-SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       300 g~~-~~~~~~s~d~~~la~~~  319 (321)
                      ... .....+++||++|+++.
T Consensus       470 ~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          470 ENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             SSSBEEEEEECTTSCEEEEEE
T ss_pred             CCcccCCceEcCCCCEEEEEe
Confidence            222 23457899999998754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.67  E-value=1.3e-13  Score=124.63  Aligned_cols=204  Identities=11%  Similarity=0.113  Sum_probs=134.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-C-CcEEEEEecCCc-eeEEeeeecC----------CceEEEEEecCCCeEEEEeCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFR-EIFRRDFERG----------GGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~-~-~gv~vw~~~~~~-~~~~~~~~~~----------~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      +...+..++|+|||++|++++ . +.+.+|+++..+ ......+.+.          ..+..+.++++++ ++++..   
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~---  159 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL---  159 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET---
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC---
Confidence            345788999999999888776 4 448899996432 2212222111          1366788999998 544442   


Q ss_pred             CCCCCCcEEEEeCC-CCcEEE--EEee--CCceeEEEEeCCe--EEEEE--CCEEEEEEcCC--cEE--EEEEeccCCC-
Q 020784          151 PQYPLNKVMIWDDH-QSRCIG--ELSF--RSEVRSVKLRRDR--IIVVL--EQKIFVYNFAD--LKL--LHQIETIANP-  216 (321)
Q Consensus       151 ~~~~d~~v~iWD~~-~~~~~~--~~~~--~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~--~~~--~~~l~~~~~~-  216 (321)
                         .++.|++||+. +++...  .+..  ...+..+.|+++.  ++++.  ++.|++|++..  ++.  +..+...... 
T Consensus       160 ---~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  236 (347)
T 3hfq_A          160 ---GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY  236 (347)
T ss_dssp             ---TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred             ---CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC
Confidence               35789999998 555432  2222  2257789999864  55554  36999999863  543  3333332211 


Q ss_pred             ---CceEEEeeCCCceEEEeecCCCCcEEEEeeCCc-c---eEEeeccccceeEEEECCCCCEEEEEeCC-CcEEEEE--
Q 020784          217 ---KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-R---TKFIMAHDSRIACFALTQDGQLLATSSTK-GTLVRIF--  286 (321)
Q Consensus       217 ---~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~-~---~~~l~~H~~~V~~vafspdg~~las~S~D-gt~IrIW--  286 (321)
                         .....+..++|+.+|++++..++.|.+|++... .   +..+..|...++.++|+|||++|++++.+ ++ |+||  
T Consensus       237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~  315 (347)
T 3hfq_A          237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN-ATLYAR  315 (347)
T ss_dssp             CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE-EEEEEE
T ss_pred             CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc-EEEEEE
Confidence               224455556677776555777899999998622 2   33556677789999999999988888765 66 9999  


Q ss_pred             EcCCCcEEE
Q 020784          287 NTLDGTLLQ  295 (321)
Q Consensus       287 d~~tg~~i~  295 (321)
                      |..+|++..
T Consensus       316 d~~tg~l~~  324 (347)
T 3hfq_A          316 DLTSGKLSL  324 (347)
T ss_dssp             CTTTCCEEE
T ss_pred             eCCCCeEEe
Confidence            666788763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.66  E-value=1.9e-15  Score=142.00  Aligned_cols=159  Identities=9%  Similarity=0.064  Sum_probs=113.1

Q ss_pred             CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC-----------cE-----EEEEeeCCceeEEEEeCCe--EE
Q 020784          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-----------RC-----IGELSFRSEVRSVKLRRDR--II  189 (321)
Q Consensus       128 ~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~-----------~~-----~~~~~~~~~v~~v~~~~~~--~~  189 (321)
                      ..+..++++.....+++++       .++ ++||+....           ..     ...+.+...|.+++|+++.  ++
T Consensus        37 ~~~n~lavs~~~~~l~~~~-------~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~la  108 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGG-------ASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLS  108 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEE-------TTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEE
T ss_pred             CCccEEEEecCCCEEEEEC-------CCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEE
Confidence            3467778888888887766       334 899874210           11     1223345579999999864  44


Q ss_pred             EE--E---CCEEEEEEcCCc--------EE---EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eE
Q 020784          190 VV--L---EQKIFVYNFADL--------KL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TK  252 (321)
Q Consensus       190 ~~--~---~~~I~iwd~~~~--------~~---~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~  252 (321)
                      ++  +   ++.|++||+.++        +.   ++.+.+|...+..++++++. +.+++ +|+.||+|++||+..+. ..
T Consensus       109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~la-s~s~Dg~v~iwD~~~~~~~~  186 (434)
T 2oit_A          109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-PSMVA-VCLADGSIAVLQVTETVKVC  186 (434)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-TTEEE-EEETTSCEEEEEESSSEEEE
T ss_pred             EEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-CCEEE-EEECCCeEEEEEcCCCccee
Confidence            31  2   469999998654        22   33444565555555665542 46676 58999999999998764 34


Q ss_pred             EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       253 ~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      ...+|...|++++|+|+|++||+|+.||+ |+|||++ ++...++.
T Consensus       187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~  230 (434)
T 2oit_A          187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIP  230 (434)
T ss_dssp             EEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEEC
T ss_pred             eccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-Cccccccc
Confidence            56779999999999999999999999999 9999999 77766664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.66  E-value=2.4e-14  Score=148.37  Aligned_cols=221  Identities=7%  Similarity=0.044  Sum_probs=159.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEecCC-ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|...|.++.|++| .++++++.+ .++||.++.. +.......  ...+....+++++..+++..        ++.|.
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~--~~~~~~~~~SpDG~~la~~~--------~~~i~  268 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS--FTDYYPRHLNTDGRRILFSK--------GGSIY  268 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCC--CCSSCEEEEEESSSCEEEEE--------TTEEE
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecC--CCCcceeeEcCCCCEEEEEe--------CCEEE
Confidence            457789999999998 555566654 4789987652 22222221  23455668899999888765        58899


Q ss_pred             EEeCCCCcEEEEEeeC------------CceeEEEEe-CCe--EEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEee
Q 020784          160 IWDDHQSRCIGELSFR------------SEVRSVKLR-RDR--IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~------------~~v~~v~~~-~~~--~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~  224 (321)
                      +||...++.. .+..+            ..+.++.|+ ++.  ++.+..+.|++|++..++... +..+.. ..+..+.+
T Consensus       269 ~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~  345 (1045)
T 1k32_A          269 IFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLR-IRYVRRGG  345 (1045)
T ss_dssp             EECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSC-EEEEEECS
T ss_pred             EecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCc-ceEEeeeE
Confidence            9999554443 44332            258899999 864  666678899999998776543 433322 13445555


Q ss_pred             CCCceEEEeecCCCCcEE-EEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc-
Q 020784          225 GVGSLVLVCPGLQKGQVR-VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI-  302 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~-i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~-  302 (321)
                      . |+..+++ ++.++.+. +|+...+....+.+|...+.+++|||||++||+++.|++ |++||+.+|++...+..... 
T Consensus       346 s-dg~~l~~-~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          346 D-TKVAFIH-GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             S-SEEEEEE-EETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSSC
T ss_pred             c-CCCeEEE-EECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccCCCCC
Confidence            6 7777775 44477788 889887777777788899999999999999999999999 99999999998776643222 


Q ss_pred             ceeEEEeecCceEEEee
Q 020784          303 SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       303 ~~~~~~s~d~~~la~~~  319 (321)
                      ...+.+++||++|+++.
T Consensus       423 v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             CCCEEECTTSCEEEEEE
T ss_pred             ccceEECCCCCeEEEEe
Confidence            24568899999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.65  E-value=2.9e-15  Score=148.55  Aligned_cols=231  Identities=10%  Similarity=-0.033  Sum_probs=150.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCce------------------EEEEEecCCCeEEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI------------------GVVEMLFRCNILALV  145 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v------------------~~v~~~~~~~~~~~~  145 (321)
                      +...|.+++|||||++||.++++.+.+|++.+++....... +...+                  ..+.|+++++.++++
T Consensus       112 ~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~  190 (723)
T 1xfd_A          112 SNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (723)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence            33458899999999999999998899999988765432221 12222                  678999999999887


Q ss_pred             eCCCCC---------------------------CCCCCcEEEEeCCCCcEEEEEee-------CCceeEEEEeCCeEEE-
Q 020784          146 GGGPDP---------------------------QYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRDRIIV-  190 (321)
Q Consensus       146 sg~~~~---------------------------~~~d~~v~iWD~~~~~~~~~~~~-------~~~v~~v~~~~~~~~~-  190 (321)
                      +.....                           ...+.+|++||+.+++....+..       ...+..+.|+++.-.+ 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~  270 (723)
T 1xfd_A          191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (723)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence            632100                           00123899999998876555543       2467889999886333 


Q ss_pred             -EEC-----CEEEEEEcCCcEEEEEEecc-CCCCc----eEEEeeCCCceEEEee-cCCCC----c--EEEEe-eCCcc-
Q 020784          191 -VLE-----QKIFVYNFADLKLLHQIETI-ANPKG----LCAVSQGVGSLVLVCP-GLQKG----Q--VRVEH-YASKR-  250 (321)
Q Consensus       191 -~~~-----~~I~iwd~~~~~~~~~l~~~-~~~~~----~~~~s~~~d~~~la~s-Gs~dg----~--V~i~d-~~~~~-  250 (321)
                       ...     ..|++||+.+++....+..+ ...+.    ..+++++  +..|++. +..+|    .  |.+|+ ...+. 
T Consensus       271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  348 (723)
T 1xfd_A          271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD--GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN  348 (723)
T ss_dssp             EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT--SCSEEEEEEECCSSSSCEEEEEEECSSCCSSS
T ss_pred             EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC--CCeEEEEEecccCCCcceeEEEEEeccCCCCc
Confidence             221     37999999988877666443 22222    4566655  4545443 55666    4  55576 34444 


Q ss_pred             --eEEeeccccceeE-EEECCCCCEEEEEeCC---CcEEEEEEcCCCc--EEEEEeC----CCcceeEEEeecCceEEEe
Q 020784          251 --TKFIMAHDSRIAC-FALTQDGQLLATSSTK---GTLVRIFNTLDGT--LLQEECC----PSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       251 --~~~l~~H~~~V~~-vafspdg~~las~S~D---gt~IrIWd~~tg~--~i~~~~~----g~~~~~~~~s~d~~~la~~  318 (321)
                        ...+..+...+.. ++|+|||++|+..+.+   ++ ++||++....  ....+..    +.......+++||++|++.
T Consensus       349 ~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          349 DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR-RQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC-CEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc-eEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence              5566654455554 6999999999876665   67 9999987532  3333432    1223456889999999874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=157.30  Aligned_cols=227  Identities=7%  Similarity=-0.024  Sum_probs=149.2

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCC---ceEEEEEecCCCeEEEEeCCCC--CCCCCCcEEEEeCC
Q 020784           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGGGPD--PQYPLNKVMIWDDH  164 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~---~v~~v~~~~~~~~~~~~sg~~~--~~~~d~~v~iWD~~  164 (321)
                      +++|+|||++++++.++.+++||..+++....... +..   .+..++++++++.+++++....  ....+++|++||+.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            68999999888877767799999998876544332 111   3778899999999988873100  00015899999999


Q ss_pred             CCcEEEEEeeCCceeEEEEeCC--eEEEEECCEEEEEEcCCcEEEEEEeccCCCC----------------ceEEEeeCC
Q 020784          165 QSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPK----------------GLCAVSQGV  226 (321)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~----------------~~~~~s~~~  226 (321)
                      +++.+........+..+.|+++  .++.+.++.|++||+.+++..+.........                ...++.+.+
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             CCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence            9876321233456888999986  4677778999999998877643221111110                001344455


Q ss_pred             CceEEEeecCCC-C---------------------------------cEEEEeeCCcce---------EEeeccccceeE
Q 020784          227 GSLVLVCPGLQK-G---------------------------------QVRVEHYASKRT---------KFIMAHDSRIAC  263 (321)
Q Consensus       227 d~~~la~sGs~d-g---------------------------------~V~i~d~~~~~~---------~~l~~H~~~V~~  263 (321)
                      |+..||+ ++.| +                                 .|++||..++..         ..+.+|...+.+
T Consensus       179 DG~~la~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (719)
T 1z68_A          179 NGKFLAY-AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW  257 (719)
T ss_dssp             TSSEEEE-EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred             CCCEEEE-EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence            6678876 3322 1                                 677899887653         123468889999


Q ss_pred             EEECCCCCEEEEEeCCC---cEEEEEE----cCCCcEEEEEe---CCCcc--e-----eEEEeecCceEEEe
Q 020784          264 FALTQDGQLLATSSTKG---TLVRIFN----TLDGTLLQEEC---CPSIS--A-----QSGLWLSSAWLRVL  318 (321)
Q Consensus       264 vafspdg~~las~S~Dg---t~IrIWd----~~tg~~i~~~~---~g~~~--~-----~~~~s~d~~~la~~  318 (321)
                      ++|||||+++++....+   ..|.+||    +.+|++...+.   .++..  .     ...+++||++|+++
T Consensus       258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence            99999998887754221   1288899    88887654331   23322  1     45789999977663

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.64  E-value=7.4e-15  Score=142.49  Aligned_cols=213  Identities=9%  Similarity=0.064  Sum_probs=148.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----CcEEEEEecC--CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           86 PTLLHISFNQDHGCFAAGTD----HGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~----~gv~vw~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|.+++|+|| +++++++.    +..+||.++.  .+......  .........++++++.++++++.      ++.+.
T Consensus        65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~--~~~~~~~~~~s~dg~~~~~~s~~------~~~~~  135 (582)
T 3o4h_A           65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLE--AVKPMRILSGVDTGEAVVFTGAT------EDRVA  135 (582)
T ss_dssp             SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECT--TSCSBEEEEEEECSSCEEEEEEC------SSCEE
T ss_pred             cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccccc--CCCCceeeeeCCCCCeEEEEecC------CCCce
Confidence            57999999999 77776653    3467887755  33322222  23345577889999877766644      34556


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE-C----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-E----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~-~----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      |||+.+++.........  .++.|+++  .++.+. +    ..|++||+.+++.. .+..+....  ....+.+|+..|+
T Consensus       136 l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~--~~~~~SpDG~~l~  210 (582)
T 3o4h_A          136 LYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF--SSASISPGMKVTA  210 (582)
T ss_dssp             EEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE--EEEEECTTSCEEE
T ss_pred             EEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc--ccceECCCCCEEE
Confidence            99999887665555444  67778765  444332 3    47999999887754 565554443  4444455668888


Q ss_pred             eecCCCC--cEEEEeeCCcceEEeeccccceeEEE--------ECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          233 CPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFA--------LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       233 ~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~va--------fspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                       +++.+|  .|++||..++....+.+|...|..++        |+|||.++++++.|++ ++||++  |++..+.  ...
T Consensus       211 -~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g~~~~~~--~~~  284 (582)
T 3o4h_A          211 -GLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--GERVEAP--QGN  284 (582)
T ss_dssp             -EEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--TEEECCC--SSE
T ss_pred             -EccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--CCeeccC--CCc
Confidence             467788  78889998877667788888888888        9999999999999999 999999  7776522  222


Q ss_pred             ceeEEEeecCceEEEee
Q 020784          303 SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       303 ~~~~~~s~d~~~la~~~  319 (321)
                      ...+.++ |+++++.+.
T Consensus       285 v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          285 HGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             EEEEEEE-TTEEEEEEE
T ss_pred             eEEEEec-CCEEEEEEc
Confidence            3345777 888886643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=2.4e-14  Score=143.11  Aligned_cols=226  Identities=11%  Similarity=0.043  Sum_probs=146.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCC---ce--EEEEEecCCCeEEEEeCCCCC--CCCCCcEE
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG---GI--GVVEMLFRCNILALVGGGPDP--QYPLNKVM  159 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~---~v--~~v~~~~~~~~~~~~sg~~~~--~~~d~~v~  159 (321)
                      ...+++|+|||++|+++ ++.|++||+.+++....... |..   .+  ..+.++++++.+++.+.....  ....+.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45579999999999998 77799999999876544332 221   12  226789999999887731100  00115678


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEECCEEEEEEcCCcEEEEEEeccCCCCce-----------------E
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGL-----------------C  220 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~-----------------~  220 (321)
                      +||+.+++......+...+....|+++  .++.+.++.|++|++.+++..+ +........+                 .
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCc
Confidence            999999986543334557889999986  4777788999999998776543 2221111101                 1


Q ss_pred             EEeeCCCceEEEeecCC---------------------------------CC--cEEEEeeCC---c---ceEEee----
Q 020784          221 AVSQGVGSLVLVCPGLQ---------------------------------KG--QVRVEHYAS---K---RTKFIM----  255 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~---------------------------------dg--~V~i~d~~~---~---~~~~l~----  255 (321)
                      ++.+.||+..||+....                                 +.  .|.+||+.+   +   ....+.    
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            23344566777753211                                 11  466688877   5   444454    


Q ss_pred             --ccccceeEEEECCCCCEEEEEeC----CCcEEEEEEcCCCc----EEE--EE-eCCCc-------ceeEEEeecCceE
Q 020784          256 --AHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDGT----LLQ--EE-CCPSI-------SAQSGLWLSSAWL  315 (321)
Q Consensus       256 --~H~~~V~~vafspdg~~las~S~----Dgt~IrIWd~~tg~----~i~--~~-~~g~~-------~~~~~~s~d~~~l  315 (321)
                        +|...+..++|+|||+++|....    +.. |++||+.+|+    |..  ++ ..++.       .....+++||++|
T Consensus       255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l  333 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF  333 (740)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred             CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence              38889999999999997776543    235 9999999998    321  11 12222       1234789999988


Q ss_pred             E
Q 020784          316 R  316 (321)
Q Consensus       316 a  316 (321)
                      +
T Consensus       334 ~  334 (740)
T 4a5s_A          334 Y  334 (740)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.58  E-value=1.7e-13  Score=125.32  Aligned_cols=217  Identities=11%  Similarity=-0.073  Sum_probs=135.2

Q ss_pred             EEEcCCCCEEEEEcC-Cc---EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           91 ISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        91 v~fs~dg~~lasg~~-~g---v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      .+|+|||++|+.+++ ++   +.+||+++++....... +...+....++++++.++++.       .++.|.+||+.++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~~l~~~~-------~~~~l~~~d~~~g  112 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDDALFYVK-------DGRNLMRVDLATL  112 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSSEEEEEE-------TTTEEEEEETTTC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCCEEEEEe-------CCCeEEEEECCCC
Confidence            789999999998877 56   66778777665322221 122222457899999999888       4578999999999


Q ss_pred             cEEEEEeeCCc-eeEEE--EeCCe-EEEE------------------------ECCEEEEEEcCCcEEEEEEeccCCCCc
Q 020784          167 RCIGELSFRSE-VRSVK--LRRDR-IIVV------------------------LEQKIFVYNFADLKLLHQIETIANPKG  218 (321)
Q Consensus       167 ~~~~~~~~~~~-v~~v~--~~~~~-~~~~------------------------~~~~I~iwd~~~~~~~~~l~~~~~~~~  218 (321)
                      +....+..+.. +....  ++++. .+++                        ....|.+||+.+++... +..+.....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~  191 (388)
T 3pe7_A          113 EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLG  191 (388)
T ss_dssp             CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEE
T ss_pred             cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCcccc
Confidence            87665555443 22222  34442 2221                        12479999998886543 333333333


Q ss_pred             eEEEeeCCCceEEEeecCC-----CCcEEEEeeCCcceEEeeccc--cceeEEEECCCCCEEEEEeCC-Cc---EEEEEE
Q 020784          219 LCAVSQGVGSLVLVCPGLQ-----KGQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLATSSTK-GT---LVRIFN  287 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~-----dg~V~i~d~~~~~~~~l~~H~--~~V~~vafspdg~~las~S~D-gt---~IrIWd  287 (321)
                      ...+++. |+..|++....     ...|.+++...+....+..+.  ..+..++|+|||+.||..+.+ +.   .|.+||
T Consensus       192 ~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          192 HPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             EEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred             ccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence            4445540 55666653332     236777777666666666665  358899999999988765542 21   299999


Q ss_pred             cCCCcEE--EEEeCCCc-----ceeEEEeecCceEEEe
Q 020784          288 TLDGTLL--QEECCPSI-----SAQSGLWLSSAWLRVL  318 (321)
Q Consensus       288 ~~tg~~i--~~~~~g~~-----~~~~~~s~d~~~la~~  318 (321)
                      +.+|+..  ..+. +..     .....+++||++|++.
T Consensus       271 ~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          271 PETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             TTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC---
T ss_pred             cCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeE
Confidence            9999853  3332 210     1122689999988753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=8.7e-13  Score=120.81  Aligned_cols=215  Identities=14%  Similarity=0.170  Sum_probs=137.3

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEecCCceeEEeeee-----cCCceEEEEEecCCCeEEEEeCCCCCCC
Q 020784           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (321)
Q Consensus        90 ~v~fs~dg~~lasg~-----------~~gv~vw~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~~~~sg~~~~~~  153 (321)
                      .++|+|||++|+++.           ++.|.+||..+.+........     ++.....+.++++++.++++..+     
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----  128 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----  128 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----
Confidence            799999999998875           234889999988776555431     11234457888999988887632     


Q ss_pred             CCCcEEEEeCCCCcEEEE-EeeCCc---------------------eeEEEEeC--------------------------
Q 020784          154 PLNKVMIWDDHQSRCIGE-LSFRSE---------------------VRSVKLRR--------------------------  185 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~-~~~~~~---------------------v~~v~~~~--------------------------  185 (321)
                      .+++|.+||+++++.+.+ +.....                     +..+.+..                          
T Consensus       129 ~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  208 (361)
T 2oiz_A          129 PATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPA  208 (361)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEec
Confidence            248899999999988777 443221                     11111110                          


Q ss_pred             ---CeEEEE-ECCEEEEEEcCCc--EEEEEEeccC----------CCCceEEEeeCCCceEEEee--cC------CCCcE
Q 020784          186 ---DRIIVV-LEQKIFVYNFADL--KLLHQIETIA----------NPKGLCAVSQGVGSLVLVCP--GL------QKGQV  241 (321)
Q Consensus       186 ---~~~~~~-~~~~I~iwd~~~~--~~~~~l~~~~----------~~~~~~~~s~~~d~~~la~s--Gs------~dg~V  241 (321)
                         ..++.. .++.|.++|+...  ..+..+....          .....+++++++...+++..  |.      ..+.|
T Consensus       209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v  288 (361)
T 2oiz_A          209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI  288 (361)
T ss_dssp             ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred             ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence               011111 1235566665422  1222221100          11113566665433333321  00      13478


Q ss_pred             EEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC--cEEEEE-eCCCcceeEEEeecCc
Q 020784          242 RVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEE-CCPSISAQSGLWLSSA  313 (321)
Q Consensus       242 ~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg--~~i~~~-~~g~~~~~~~~s~d~~  313 (321)
                      .+||..+.+ +.++..|.  +.+|+|+|||++|++++. ++ |.|||+.++  ++++++ ..|.....+.+++||.
T Consensus       289 ~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~-v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          289 WVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN-VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC-EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce-EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            889988766 55777777  999999999999998886 88 999999999  999997 5677777788899886

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.54  E-value=2.4e-11  Score=106.66  Aligned_cols=221  Identities=14%  Similarity=0.172  Sum_probs=146.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-----cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ....+++++++|+++++... +.|.+||.+ ++........     +......+++......+.++..+     .++.|+
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~  103 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQ  103 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEE
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEE
Confidence            46889999999998888765 568899976 4333222210     11245566664333344444421     147899


Q ss_pred             EEeCCCCcEEEEEeeC--CceeEEEEeCCe-EEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          160 IWDDHQSRCIGELSFR--SEVRSVKLRRDR-IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~--~~v~~v~~~~~~-~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +|| .+++.+..+...  ..+..+.+.++. ++++.  ++.|++||.. ++.+..+...........+..++++.+++ +
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~  180 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI-S  180 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE-E
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE-E
Confidence            999 567766666432  368889998754 55554  3699999964 56666665322222345566666777766 4


Q ss_pred             cCCCCcEEEEeeCCcceEEeecc--ccceeEEEECCCCCEEEEEeCCC-cEEEEEEcCCCcEEEEEeCCCc---ceeEEE
Q 020784          235 GLQKGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEECCPSI---SAQSGL  308 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~~~~l~~H--~~~V~~vafspdg~~las~S~Dg-t~IrIWd~~tg~~i~~~~~g~~---~~~~~~  308 (321)
                      ...++.|.+|+...+.+..+..+  ...+..|+++++|+++++.+.++ . |++|| .+|+.+.++..+..   ...+++
T Consensus       181 ~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~-~~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          181 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred             ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEEC-CCCCEEEEEcccCCCCcceeEEE
Confidence            66788999999866656666443  46799999999999999988776 8 99999 46788877754322   234577


Q ss_pred             eecCceEEE
Q 020784          309 WLSSAWLRV  317 (321)
Q Consensus       309 s~d~~~la~  317 (321)
                      +++|++++.
T Consensus       259 ~~~g~l~vs  267 (286)
T 1q7f_A          259 MDDGSVVLA  267 (286)
T ss_dssp             ETTTEEEEE
T ss_pred             CCCCcEEEE
Confidence            788875543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.53  E-value=6.5e-12  Score=113.20  Aligned_cols=220  Identities=8%  Similarity=-0.011  Sum_probs=146.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-------------------------cEEEEEecCCceeEEeeeecCCceEEEEEecCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDH-------------------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN  140 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~-------------------------gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~  140 (321)
                      +.|.+|+|+++|++++++..+                         .|.+||.++++........+-.....+++.++++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            479999999999999888765                         4789998877764332210113566778888888


Q ss_pred             eEEEEeCCCCCCCCCCcEEEEeCCCCc-EEEEEee----------CCceeEEEEeC--CeEEEEE---CCEEEEEEcCCc
Q 020784          141 ILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF----------RSEVRSVKLRR--DRIIVVL---EQKIFVYNFADL  204 (321)
Q Consensus       141 ~~~~~sg~~~~~~~d~~v~iWD~~~~~-~~~~~~~----------~~~v~~v~~~~--~~~~~~~---~~~I~iwd~~~~  204 (321)
                      ++++-.       .++.|++||..... .+..+..          -..+..+++++  ..++++.   ++.|++|+ .++
T Consensus       104 l~v~d~-------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          104 YWVTDV-------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EEEEET-------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EEEEEC-------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            554443       35899999986542 4444421          12578899986  3466654   35999999 567


Q ss_pred             EEEEEEeccCCC--------CceEEEeeCCC-ceEEEeecCCCCcEEEEeeCCcc-eEEe--eccccceeEEEECC----
Q 020784          205 KLLHQIETIANP--------KGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR-TKFI--MAHDSRIACFALTQ----  268 (321)
Q Consensus       205 ~~~~~l~~~~~~--------~~~~~~s~~~d-~~~la~sGs~dg~V~i~d~~~~~-~~~l--~~H~~~V~~vafsp----  268 (321)
                      +.+..+......        .....+..+++ +.+++ +...++.|++|+..++. +..+  ..+...+..++|+|    
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence            777777432211        11334444455 56665 47788899999987444 4555  35677899999999    


Q ss_pred             --CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC----CCcceeEEEeecCceE
Q 020784          269 --DGQLLATSSTKGTLVRIFNTLDGTLLQEECC----PSISAQSGLWLSSAWL  315 (321)
Q Consensus       269 --dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~----g~~~~~~~~s~d~~~l  315 (321)
                        +|..+++.+.+.+ |++||+.+|+++.++..    ......+++++||..+
T Consensus       255 ~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             EEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             EeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence              4443333444558 99999999999998841    2224456778888443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.53  E-value=9.1e-12  Score=113.05  Aligned_cols=201  Identities=10%  Similarity=0.136  Sum_probs=128.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC--CcEEEEEecCCceeEE----eeee---------cCCceEEEEEecCCCeEEEEeCCC
Q 020784           85 PPTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFR----RDFE---------RGGGIGVVEMLFRCNILALVGGGP  149 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~~----~~~~---------~~~~v~~v~~~~~~~~~~~~sg~~  149 (321)
                      ......+++  ||++|++++.  +.+.+|++...+.+..    ..+.         +...+..++++++++.++++..+ 
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-  175 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-  175 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-
Confidence            346777888  8888777653  4488999975432211    1110         01223668899999877776632 


Q ss_pred             CCCCCCCcEEEEeCCCCc-------E-------EEEEeeCCceeEEEEeCCe--EEEEE--CCEEEEEEcCCcEE--EEE
Q 020784          150 DPQYPLNKVMIWDDHQSR-------C-------IGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKL--LHQ  209 (321)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~-------~-------~~~~~~~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~~--~~~  209 (321)
                           ++.|++|++....       .       ...+.....+..+.|+++.  ++++.  ++.|++|++.++++  +..
T Consensus       176 -----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          176 -----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             -----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             -----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence                 5889999887433       2       1122223467889999874  55665  46999999987654  333


Q ss_pred             EeccCC-CCceEEEeeCCCceEEEeecCC-CCcEEEEeeC--CcceE---EeeccccceeEEEECCCCCEEEEEe-CCCc
Q 020784          210 IETIAN-PKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYA--SKRTK---FIMAHDSRIACFALTQDGQLLATSS-TKGT  281 (321)
Q Consensus       210 l~~~~~-~~~~~~~s~~~d~~~la~sGs~-dg~V~i~d~~--~~~~~---~l~~H~~~V~~vafspdg~~las~S-~Dgt  281 (321)
                      +..... ......+..++|+.+|++++.. ++.|.+|++.  ++.+.   .+.. ...+++++|+|||++|++++ .+++
T Consensus       251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred             EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence            333211 1223455556666777655666 6899999985  33332   3333 55789999999999888887 4566


Q ss_pred             EEEEE--EcCCCcEEE
Q 020784          282 LVRIF--NTLDGTLLQ  295 (321)
Q Consensus       282 ~IrIW--d~~tg~~i~  295 (321)
                       |+||  |..+|++..
T Consensus       330 -v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          330 -IQIFERDQATGLLTD  344 (361)
T ss_dssp             -EEEEEECTTTCCEEE
T ss_pred             -EEEEEEECCCCcEee
Confidence             9996  556788754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.52  E-value=1.4e-12  Score=119.21  Aligned_cols=233  Identities=11%  Similarity=0.037  Sum_probs=139.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEE--EecCCCeEEEEeCCCC---------
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVE--MLFRCNILALVGGGPD---------  150 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~--~~~~~~~~~~~sg~~~---------  150 (321)
                      .+...+..+.|+|||++|+.++. ..+.+||+.+++....... +.+.+....  ..+++..++.......         
T Consensus        78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            34344556789999999998886 4688999998876544443 233333333  3566766653320000         


Q ss_pred             ------CCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeC-Ce--EEEEEC-------CEEEEEEcCCcEEEEEEeccC
Q 020784          151 ------PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DR--IIVVLE-------QKIFVYNFADLKLLHQIETIA  214 (321)
Q Consensus       151 ------~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~--~~~~~~-------~~I~iwd~~~~~~~~~l~~~~  214 (321)
                            ....+..|.+||+.+++..........+..+.|++ +.  ++.+..       ..|.++|...++. +.+..+.
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~  235 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA  235 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence                  00024789999999998766666666788899999 64  433432       2677788765443 3333332


Q ss_pred             CCCceEEEeeCCCceEEEeecCCCC----cEEEEeeCCcceEEeecccc---c---eeEEEECCCCCEEEEE--------
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYASKRTKFIMAHDS---R---IACFALTQDGQLLATS--------  276 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg----~V~i~d~~~~~~~~l~~H~~---~---V~~vafspdg~~las~--------  276 (321)
                      ....+....+.+|+..|++.+..++    .|.+||..++....+.....   .   ...++|+|||++|+..        
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  315 (388)
T 3pe7_A          236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK  315 (388)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred             CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence            2122333344556665554333322    38889988766443322211   1   2234799999988854        


Q ss_pred             -eCCCcEEEEEEcCCCcEEEEEeCCCc------------ceeEEEeecCceEEEee
Q 020784          277 -STKGTLVRIFNTLDGTLLQEECCPSI------------SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       277 -S~Dgt~IrIWd~~tg~~i~~~~~g~~------------~~~~~~s~d~~~la~~~  319 (321)
                       ..+.. |.+||+.+++.. .+.....            .....+++||++|++++
T Consensus       316 ~~~~~~-i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          316 IENDPF-LYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             -CCCCE-EEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             cCCCCE-EEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence             33556 999999998764 3432222            33458899999998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=7.1e-12  Score=112.84  Aligned_cols=209  Identities=14%  Similarity=0.076  Sum_probs=131.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC---c---EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCC---------
Q 020784           86 PTLLHISFNQDHGCFAAGTDH---G---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD---------  150 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~---g---v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~---------  150 (321)
                      ..+.+++|+|||++||..+.+   +   +.+|++++++.......  .. +..+.|+++++.+++++....         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            358889999999999977642   2   55667776654333332  33 888899999998888762100         


Q ss_pred             -C-------C---CCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEE-C-------C-EEEEEEcCCcEEEEEE
Q 020784          151 -P-------Q---YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-E-------Q-KIFVYNFADLKLLHQI  210 (321)
Q Consensus       151 -~-------~---~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~-------~-~I~iwd~~~~~~~~~l  210 (321)
                       .       .   -....|.+||+.+++.+..+... .+..+.|+++.++... .       . ...+|.+.+++. ..+
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l  213 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKM  213 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEE
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEe
Confidence             0       0   01257999999988774444444 7888999998844433 1       1 334444435554 344


Q ss_pred             eccCCCCceEEEeeCCCceEEEeecCC-------CCcEEEEeeCCcceE-EeeccccceeE-EEECCCCCEEEEEeCCCc
Q 020784          211 ETIANPKGLCAVSQGVGSLVLVCPGLQ-------KGQVRVEHYASKRTK-FIMAHDSRIAC-FALTQDGQLLATSSTKGT  281 (321)
Q Consensus       211 ~~~~~~~~~~~~s~~~d~~~la~sGs~-------dg~V~i~d~~~~~~~-~l~~H~~~V~~-vafspdg~~las~S~Dgt  281 (321)
                      ..+   .....+++  |+..|++.+..       .+.|.+|+  ++... ....|...+.. ++|+ || ++++++.|+.
T Consensus       214 ~~~---~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          214 FEK---VSFYAVDS--DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             EEE---ESEEEEEE--CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             ccC---cceeeECC--CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence            333   22334455  44555543332       24677777  44444 34566788886 9999 99 9999999998


Q ss_pred             EEEEEEcCCCcEEEEEeCCCcceeEEEeecC
Q 020784          282 LVRIFNTLDGTLLQEECCPSISAQSGLWLSS  312 (321)
Q Consensus       282 ~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~  312 (321)
                       ++|| +.+|+....+ .+ ...+..+++++
T Consensus       285 -~~l~-~~~g~~~~~~-~~-~~~v~~~~~s~  311 (347)
T 2gop_A          285 -VNLY-IWDGEIKPIA-KG-RHWIMGFDVDE  311 (347)
T ss_dssp             -EEEE-EESSSEEEEE-CS-SSEEEEEEESS
T ss_pred             -EEEE-EcCCceEEEe-cC-CCeEEeeeeeC
Confidence             9999 8888764443 23 33444555555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.48  E-value=1.4e-12  Score=119.25  Aligned_cols=217  Identities=10%  Similarity=-0.100  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCEEEEEcCC----cEEEEEecCCceeEEeeeecCCce-EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           88 LLHISFNQDHGCFAAGTDH----GFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~----gv~vw~~~~~~~~~~~~~~~~~~v-~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      +.+++|+|||++|+...+.    .+.+|++++++... ... +.... ....|+++++.+++++       .++.|.+||
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~-~~~~~~~~~~~spdg~~l~~~~-------~~~~l~~~d  108 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTE-GKGDNTFGGFISTDERAFFYVK-------NELNLMKVD  108 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCC-SSCBCTTTCEECTTSSEEEEEE-------TTTEEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eec-CCCCccccceECCCCCEEEEEE-------cCCcEEEEE
Confidence            5668999999998876542    36677877765422 221 12222 2257899999998888       457899999


Q ss_pred             CCCCcEEEEEeeCCce-eE---E----------------EEeCCe--EEE------EECCEEEEEEcCCcEEEEEEeccC
Q 020784          163 DHQSRCIGELSFRSEV-RS---V----------------KLRRDR--IIV------VLEQKIFVYNFADLKLLHQIETIA  214 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~v-~~---v----------------~~~~~~--~~~------~~~~~I~iwd~~~~~~~~~l~~~~  214 (321)
                      +.+++.......+... ..   +                .++++.  +++      .....|.+||+.+++...... +.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~  187 (396)
T 3c5m_A          109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DT  187 (396)
T ss_dssp             TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ES
T ss_pred             CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CC
Confidence            9988765554433221 01   1                122211  111      122489999998877654443 33


Q ss_pred             CCCceEEEeeCCCceEEEeecCC-C----CcEEEEeeCCcceEEeecc--ccceeEEEECCCCCEEEEEeCC-----CcE
Q 020784          215 NPKGLCAVSQGVGSLVLVCPGLQ-K----GQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTK-----GTL  282 (321)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~-d----g~V~i~d~~~~~~~~l~~H--~~~V~~vafspdg~~las~S~D-----gt~  282 (321)
                      .......++++ ++..|++.... .    ..|.+++...+....+..+  ...+..++|+|||++|+.++.+     +. 
T Consensus       188 ~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-  265 (396)
T 3c5m_A          188 AWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV-  265 (396)
T ss_dssp             SCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE-
T ss_pred             cccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce-
Confidence            33344455551 34544442222 1    3577788766655555444  2358899999999988877654     45 


Q ss_pred             EEEEEcCCCcEEEEEeCCCcceeEEEee-cCceEEEe
Q 020784          283 VRIFNTLDGTLLQEECCPSISAQSGLWL-SSAWLRVL  318 (321)
Q Consensus       283 IrIWd~~tg~~i~~~~~g~~~~~~~~s~-d~~~la~~  318 (321)
                      |++||+.+|+.........  ....+++ ||++|+.+
T Consensus       266 l~~~d~~~g~~~~l~~~~~--~~~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          266 IYKANPETLENEEVMVMPP--CSHLMSNFDGSLMVGD  300 (396)
T ss_dssp             EEEECTTTCCEEEEEECCS--EEEEEECSSSSEEEEE
T ss_pred             EEEEECCCCCeEEeeeCCC--CCCCccCCCCceEEEe
Confidence            9999999998654332221  1267788 99988764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.48  E-value=1e-13  Score=137.65  Aligned_cols=219  Identities=7%  Similarity=-0.046  Sum_probs=137.3

Q ss_pred             CeEEEEEcCCCCEEEEEcC----------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~----------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      .|.+++|||||++||.+++          ..+++||+++++......+  ...+..+.|+++++.++++.        ++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~--------~~  130 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY--------QN  130 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE--------TT
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE--------CC
Confidence            3889999999999998875          4588999988765211222  34577789999999999886        57


Q ss_pred             cEEEEeCCCCcEEEEEeeC-C-ce-----------------eEEEEeCCe--EEEEE-CC--------------------
Q 020784          157 KVMIWDDHQSRCIGELSFR-S-EV-----------------RSVKLRRDR--IIVVL-EQ--------------------  194 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~-~-~v-----------------~~v~~~~~~--~~~~~-~~--------------------  194 (321)
                      +|++||+.+++........ . .|                 .++.|+++.  ++.+. ++                    
T Consensus       131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  210 (719)
T 1z68_A          131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI  210 (719)
T ss_dssp             EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred             eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence            9999999988765422111 1 12                 478999874  44443 21                    


Q ss_pred             --------------EEEEEEcCCcEEE--EEE------eccCCCCceEEEeeCCCceEEEee-cCCCC--cEEEEe----
Q 020784          195 --------------KIFVYNFADLKLL--HQI------ETIANPKGLCAVSQGVGSLVLVCP-GLQKG--QVRVEH----  245 (321)
Q Consensus       195 --------------~I~iwd~~~~~~~--~~l------~~~~~~~~~~~~s~~~d~~~la~s-Gs~dg--~V~i~d----  245 (321)
                                    .|++||+.+++.+  ..+      ..+...+...+++  +|+.+++.. ...++  .|.+||    
T Consensus       211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pD~~~~~~~~~~~~~~~~l~~~d~~~~  288 (719)
T 1z68_A          211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV--TDERVCLQWLKRVQNVSVLSICDFRED  288 (719)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES--SSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred             eecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe--CCCeEEEEEeccccCeEEEEEEcccCC
Confidence                          7889999877642  111      1222223334444  456666531 12222  466688    


Q ss_pred             eCCcceE-Ee----ecccccee-----EEEECCCCCEEEE--EeCCCc-EEEEEEcCCCcEEEEEeCCCcc-eeEEEeec
Q 020784          246 YASKRTK-FI----MAHDSRIA-----CFALTQDGQLLAT--SSTKGT-LVRIFNTLDGTLLQEECCPSIS-AQSGLWLS  311 (321)
Q Consensus       246 ~~~~~~~-~l----~~H~~~V~-----~vafspdg~~las--~S~Dgt-~IrIWd~~tg~~i~~~~~g~~~-~~~~~s~d  311 (321)
                      ..++... .+    .+|...|.     .++|+|||+.|+.  ...+|. .|.+||+.+++ ...+..+... ....++ +
T Consensus       289 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d  366 (719)
T 1z68_A          289 WQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-T  366 (719)
T ss_dssp             SSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-C
T ss_pred             CCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-e
Confidence            6555433 33    46777787     8999999996554  444553 26677887777 3455433322 223445 8


Q ss_pred             CceEEEee
Q 020784          312 SAWLRVLR  319 (321)
Q Consensus       312 ~~~la~~~  319 (321)
                      +++|++..
T Consensus       367 ~~~i~~~~  374 (719)
T 1z68_A          367 QDSLFYSS  374 (719)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEE
Confidence            88776643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.47  E-value=4.5e-11  Score=104.82  Aligned_cols=193  Identities=12%  Similarity=0.107  Sum_probs=129.9

Q ss_pred             CCeEEEEE-cCCCCEEEEEc--CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           86 PTLLHISF-NQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        86 ~~V~~v~f-s~dg~~lasg~--~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      ..+.+++| .++|++++++.  ++.|++|+ ..++........+......+++.+++++++...       .++.|.+||
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~~  148 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVEC-------KVMRVIIFD  148 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEET-------TTTEEEEEC
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEEC-------CCCEEEEEc
Confidence            46889999 57888877774  56788998 444443333211123567778888887554433       358899999


Q ss_pred             CCCCcEEEEEeeC---CceeEEEEeCCe-EEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          163 DHQSRCIGELSFR---SEVRSVKLRRDR-IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       163 ~~~~~~~~~~~~~---~~v~~v~~~~~~-~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      .. ++.+..+...   ..+..++++++. ++++.  ++.|++||.. ++.+..+...........+..++++.++++ ..
T Consensus       149 ~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~-~~  225 (286)
T 1q7f_A          149 QN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIA-DN  225 (286)
T ss_dssp             TT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEE-EC
T ss_pred             CC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEE-eC
Confidence            64 5555555432   358889998764 55554  4699999974 556666654322223445566667777774 55


Q ss_pred             CCC-cEEEEeeCCcceEEeecccc--ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          237 QKG-QVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       237 ~dg-~V~i~d~~~~~~~~l~~H~~--~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      .++ .|.+|+...+.+..+..+..  .+.+++|+|+|+++++ +.|++ |+||++...
T Consensus       226 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~-v~v~~~~~~  281 (286)
T 1q7f_A          226 HNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR-LYIYRYVQL  281 (286)
T ss_dssp             SSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE-EEEEECSCC
T ss_pred             CCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe-EEEEEcccc
Confidence            565 99999976655666665543  4789999999998887 56888 999998654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=3.6e-10  Score=101.15  Aligned_cols=225  Identities=8%  Similarity=0.002  Sum_probs=143.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      +...+.+++|+++|++++++.. ++|.+||.++.+....... +...+..+++.+++++++...++..   ..+.|.+||
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~dg~l~v~~~~~~~---~~~~i~~~d  118 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYLGDFK---STGGIFAAT  118 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEECTTSS---SCCEEEEEC
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC-CCCCcceEEECCCCcEEEEeCCCCC---CCceEEEEe
Confidence            3346789999999998888776 5688999887765432211 3566888888888876655442100   125899999


Q ss_pred             CCCCcEEEEEe---eCCceeEEEEeCCe-EEEEEC--------CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          163 DHQSRCIGELS---FRSEVRSVKLRRDR-IIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       163 ~~~~~~~~~~~---~~~~v~~v~~~~~~-~~~~~~--------~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      .+++.....+.   ....+..+.+.++. ++++..        +.|..||..+++... +.....  ....+..++++..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~--~~~~i~~~~dg~~  195 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNIS--VANGIALSTDEKV  195 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEES--SEEEEEECTTSSE
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCC--cccceEECCCCCE
Confidence            98877543332   12357888898764 555543        356666655444432 222111  1334445556554


Q ss_pred             EEeecCCCCcEEEEeeCC--cceEE--------eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          231 LVCPGLQKGQVRVEHYAS--KRTKF--------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~--~~~~~--------l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      +.++.+.++.|.+|+...  ..+..        +.++ ..+..++++++|.++++...++. |++||. +++.+.++...
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~~  272 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILIP  272 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEECT
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEcC
Confidence            443456678899998853  22221        1222 46889999999999988887888 999998 68888887644


Q ss_pred             C-------cceeEEEeecCceEEEe
Q 020784          301 S-------ISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       301 ~-------~~~~~~~s~d~~~la~~  318 (321)
                      .       ....+++++|+++|.++
T Consensus       273 ~~~~g~~~~~~~~~~~~dg~~L~v~  297 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIPGTNQLIIC  297 (333)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             CCccccccCcceEEECCCCCEEEEE
Confidence            3       23455777888777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.45  E-value=4.6e-11  Score=109.05  Aligned_cols=198  Identities=10%  Similarity=0.009  Sum_probs=128.7

Q ss_pred             eEEEEEcCCCCE--EEEEc--------------CCcEEEEEecC-CceeEEeee---ecCCceEEEEEecCCCeEEEEeC
Q 020784           88 LLHISFNQDHGC--FAAGT--------------DHGFRIYNCDP-FREIFRRDF---ERGGGIGVVEMLFRCNILALVGG  147 (321)
Q Consensus        88 V~~v~fs~dg~~--lasg~--------------~~gv~vw~~~~-~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~sg  147 (321)
                      +.+++|+|||++  ++++.              ++.+.+|+++. ++.......   .+...+..+.++++++.++++..
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            556899999994  55543              34588999974 443222211   12456788899999988776653


Q ss_pred             CCCCCCCCCcEEEEeCC-CCcEE--EEEee---CCceeEEEEeCCe--EEEEE--CCEEEEEEcC--CcEEE---EEEec
Q 020784          148 GPDPQYPLNKVMIWDDH-QSRCI--GELSF---RSEVRSVKLRRDR--IIVVL--EQKIFVYNFA--DLKLL---HQIET  212 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~-~~~~~--~~~~~---~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~--~~~~~---~~l~~  212 (321)
                      +      ++.|++||++ +++..  ..+..   ...+..+.|+++.  ++++.  ++.|.+|++.  ++++.   +.+..
T Consensus       165 ~------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  238 (365)
T 1jof_A          165 T------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             T------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             C------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence            2      4789999998 77653  33432   3468899999864  55555  3699999874  45543   23332


Q ss_pred             cCCC----C-------ceEEEe-eCCCceEEEeecCCCC-----cEEEEeeC-CcceEE----eeccccceeEEEECC--
Q 020784          213 IANP----K-------GLCAVS-QGVGSLVLVCPGLQKG-----QVRVEHYA-SKRTKF----IMAHDSRIACFALTQ--  268 (321)
Q Consensus       213 ~~~~----~-------~~~~~s-~~~d~~~la~sGs~dg-----~V~i~d~~-~~~~~~----l~~H~~~V~~vafsp--  268 (321)
                      ....    .       ....+. .++|+.+|+++...++     .|.+|++. ++.+..    ...+...+..++|+|  
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~  318 (365)
T 1jof_A          239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred             CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC
Confidence            1110    1       244455 5566676654333333     89999985 444442    333566788999999  


Q ss_pred             -CCCEEEEEeCC-CcEEEEEEcCCCc
Q 020784          269 -DGQLLATSSTK-GTLVRIFNTLDGT  292 (321)
Q Consensus       269 -dg~~las~S~D-gt~IrIWd~~tg~  292 (321)
                       ||++|++++.+ ++ |+||++....
T Consensus       319 ~dg~~l~v~~~~~~~-v~v~~~~~~~  343 (365)
T 1jof_A          319 WSDEWMAITDDQEGW-LEIYRWKDEF  343 (365)
T ss_dssp             TCTTEEEEECSSSCE-EEEEEEETTE
T ss_pred             cCCCEEEEEEcCCCe-EEEEEEchhh
Confidence             89999999875 77 9999997763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.43  E-value=6.8e-12  Score=123.20  Aligned_cols=222  Identities=10%  Similarity=-0.026  Sum_probs=136.1

Q ss_pred             EEEEc--CCCCE-EEEEcCCcEEEEEecCC----ceeEEeeee----cCCceEEEEEecCCCeEEEEeCCCC---CCCCC
Q 020784           90 HISFN--QDHGC-FAAGTDHGFRIYNCDPF----REIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPD---PQYPL  155 (321)
Q Consensus        90 ~v~fs--~dg~~-lasg~~~gv~vw~~~~~----~~~~~~~~~----~~~~v~~v~~~~~~~~~~~~sg~~~---~~~~d  155 (321)
                      ...|+  |||++ |+.++++..+||.++..    +........    |...+..++|+++++.+++++....   .....
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            45555  99998 88877655456665543    332222210    1235677899999999988773200   00011


Q ss_pred             CcEEEEeCCC------CcEEEEE-eeCCceeEEEEeCCe--EEEEE-C--------CEEEEEEcC-Cc---EEEEEEecc
Q 020784          156 NKVMIWDDHQ------SRCIGEL-SFRSEVRSVKLRRDR--IIVVL-E--------QKIFVYNFA-DL---KLLHQIETI  213 (321)
Q Consensus       156 ~~v~iWD~~~------~~~~~~~-~~~~~v~~v~~~~~~--~~~~~-~--------~~I~iwd~~-~~---~~~~~l~~~  213 (321)
                      .+|++||+.+      ++..... .....+..+.|+++.  ++.+. +        ..|++||+. ++   +.......+
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            5899999988      6654333 334567778898875  54443 3        379999998 56   443333333


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeCCcceEEeeccccc---------eeEEEECCCCCEEEEEeCCCcE
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSR---------IACFALTQDGQLLATSSTKGTL  282 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~l~~H~~~---------V~~vafspdg~~las~S~Dgt~  282 (321)
                      .......+++  +|+.+++ +++.+|...|  |+..++....+..+...         +.+++|+|+++++++++. ++ 
T Consensus       241 ~~~~~~~~~s--pdg~l~~-~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-  315 (662)
T 3azo_A          241 EEAIAQAEWA--PDGSLIV-ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-  315 (662)
T ss_dssp             TBCEEEEEEC--TTSCEEE-EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-
T ss_pred             CceEcceEEC--CCCeEEE-EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-
Confidence            3333344444  4556554 4677785455  55545555554443322         578999999999999998 88 


Q ss_pred             EEEE--EcCCCcEEEEEeCCCcceeEEE-eecCceEEEe
Q 020784          283 VRIF--NTLDGTLLQEECCPSISAQSGL-WLSSAWLRVL  318 (321)
Q Consensus       283 IrIW--d~~tg~~i~~~~~g~~~~~~~~-s~d~~~la~~  318 (321)
                      ++||  |+.+++ ++++. .+......+ ++++..++++
T Consensus       316 ~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s~~~~~~~~~  352 (662)
T 3azo_A          316 AVLGILDPESGE-LVDAA-GPWTEWAATLTVSGTRAVGV  352 (662)
T ss_dssp             CEEEEEETTTTE-EEECC-SSCCEEEEEEEEETTEEEEE
T ss_pred             cEEEEEECCCCc-EEEec-CCCCeEEEEEecCCCEEEEE
Confidence            9999  555565 56664 333334455 7888776654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.42  E-value=2.7e-10  Score=100.55  Aligned_cols=215  Identities=8%  Similarity=-0.062  Sum_probs=141.4

Q ss_pred             CCeEEEEEcCCCC-EEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~-~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      .-..+++|+++|+ +++++.. ++|.+|+.++. . ..... +...+..+++.+++++++...       .++.|.+||.
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~~-~~~~~~~l~~~~dg~l~v~~~-------~~~~i~~~d~   97 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEMH-PSHHQNGHCLNKQGHLIACSH-------GLRRLERQRE   97 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEES-SCSSEEEEEECTTCCEEEEET-------TTTEEEEECS
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEEC-CCCCcceeeECCCCcEEEEec-------CCCeEEEEcC
Confidence            4578999999998 6677765 66889998876 2 22222 355677888888888665544       2478999999


Q ss_pred             CCCcEEEEEee-C----CceeEEEEeCCe-EEEEE-------------------CCEEEEEEcCCcEEEEEEeccCCCCc
Q 020784          164 HQSRCIGELSF-R----SEVRSVKLRRDR-IIVVL-------------------EQKIFVYNFADLKLLHQIETIANPKG  218 (321)
Q Consensus       164 ~~~~~~~~~~~-~----~~v~~v~~~~~~-~~~~~-------------------~~~I~iwd~~~~~~~~~l~~~~~~~~  218 (321)
                      .+++....... .    ..+..+.+.++. ++++.                   .+.|..++.. ++. ..+..+..  .
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~--~  173 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRV--K  173 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCS--S
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCC--C
Confidence            88876443321 1    235678888765 44431                   1255555554 443 33333222  2


Q ss_pred             eEEEeeCCCceEEEeecCCCCcEEEEeeC-Ccce----EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~V~i~d~~-~~~~----~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      ...+..++++.++ ++.+.++.|.+|++. .+.+    ..+..+...+..|+++++|+++++.  ++. |++||.. |++
T Consensus       174 ~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g~~  248 (296)
T 3e5z_A          174 PNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-GDE  248 (296)
T ss_dssp             EEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-SCE
T ss_pred             CccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-CCE
Confidence            2344455566777 457888899999985 3333    2334466778899999999988766  777 9999986 888


Q ss_pred             EEEEeCCCcceeEEE-eecCceEEEee
Q 020784          294 LQEECCPSISAQSGL-WLSSAWLRVLR  319 (321)
Q Consensus       294 i~~~~~g~~~~~~~~-s~d~~~la~~~  319 (321)
                      +..+........+.| .+++++|.++.
T Consensus       249 ~~~~~~~~~~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          249 LGRVLTPQTTSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             EEEEECSSCCCEEEEESTTSCEEEEEE
T ss_pred             EEEEECCCCceeEEEECCCCCEEEEEc
Confidence            888865444444566 46778887754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.40  E-value=1.3e-11  Score=112.75  Aligned_cols=222  Identities=9%  Similarity=-0.004  Sum_probs=130.2

Q ss_pred             EEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEE-------------------EEEecCCCeEEEEeCCC
Q 020784           90 HISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGV-------------------VEMLFRCNILALVGGGP  149 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~-------------------v~~~~~~~~~~~~sg~~  149 (321)
                      .+.|+|||++|+.++.+ .+.+|++++++....... +.+....                   +.++++++.+++.... 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~-  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY-  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH-
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec-
Confidence            37899999999887764 588999988765433332 1221111                   1112222222221100 


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeC-Ce--EEEEEC-------CEEEEEEcCCcEEEEEEeccCCCCce
Q 020784          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DR--IIVVLE-------QKIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~--~~~~~~-------~~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                       ....+..|.+||+.+++..........+..+.|++ +.  ++.+.+       ..|.+||+..++. +.+..+.....+
T Consensus       163 -~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~  240 (396)
T 3c5m_A          163 -HTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESC  240 (396)
T ss_dssp             -HTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEE
T ss_pred             -cCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccc
Confidence             00134689999999988766666666788899988 43  444443       3688888865543 233222111123


Q ss_pred             EEEeeCCCceEEEeecCCC----CcEEEEeeCCcceEEeeccccceeEEEECC-CCCEEEEEeC----------------
Q 020784          220 CAVSQGVGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSST----------------  278 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~d----g~V~i~d~~~~~~~~l~~H~~~V~~vafsp-dg~~las~S~----------------  278 (321)
                      ..+.+.+|+..|++.+..+    +.|.+||+.++....+..... .. ++|+| ||++|+.++.                
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            3344455556555433222    348889987766554433222 33 89999 9999987652                


Q ss_pred             CCcEEEEEEcCCCcEEEEEeCCCc------------ceeEEEeecCceEEEee
Q 020784          279 KGTLVRIFNTLDGTLLQEECCPSI------------SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       279 Dgt~IrIWd~~tg~~i~~~~~g~~------------~~~~~~s~d~~~la~~~  319 (321)
                      ++. |.+||+.+++.. .+.....            .....+++||++|+.++
T Consensus       319 ~~~-i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          319 DPF-LYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             CCE-EEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             CCc-EEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence            356 999999988753 3322221            22347899999988764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=3.8e-10  Score=101.63  Aligned_cols=215  Identities=7%  Similarity=-0.069  Sum_probs=146.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ....+.+.. ++++++... +.+.+||..+++.+.....  ......+++++++. +.++..      .++.|.+||..+
T Consensus        45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g~-lyv~~~------~~~~v~~iD~~t  114 (328)
T 3dsm_A           45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDEK-AYVTQI------WDYRIFIINPKT  114 (328)
T ss_dssp             CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETTE-EEEEEB------SCSEEEEEETTT
T ss_pred             cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCCe-EEEEEC------CCCeEEEEECCC
Confidence            467788853 444444444 6688999999987665542  45566777766764 433331      258999999999


Q ss_pred             CcEEEEEeeCC------ceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          166 SRCIGELSFRS------EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       166 ~~~~~~~~~~~------~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      ++....+....      .+..+.+..+.++++.   ++.|.+||+.+++.+.++.....+.. +.+  ++++.++++ ..
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~-i~~--~~dG~l~v~-~~  190 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTS-LVM--DKYNKMWTI-TD  190 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCC-CEE--CTTSEEEEE-BC
T ss_pred             CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccc-eEE--cCCCCEEEE-EC
Confidence            99888887665      6777888778888874   56999999999999988876555432 333  455676664 33


Q ss_pred             CC----------CcEEEEeeCCcceE-Eeecc-ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEE--EeC-CC
Q 020784          237 QK----------GQVRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE--ECC-PS  301 (321)
Q Consensus       237 ~d----------g~V~i~d~~~~~~~-~l~~H-~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~--~~~-g~  301 (321)
                      .+          +.|.++|..+..+. .+... ...++.++|+|++++|..+..  + |.+||+.++++...  +.. +.
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~~~~  267 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEFRDT  267 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCCCSS
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecCCCC
Confidence            33          68989998766543 44322 346899999999998877654  7 99999999886421  111 23


Q ss_pred             cceeEEEeecCceEEEe
Q 020784          302 ISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       302 ~~~~~~~s~d~~~la~~  318 (321)
                      ....+++.+++.+|-++
T Consensus       268 ~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          268 KYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             CEEEEEECTTTCCEEEE
T ss_pred             ceEEEEEcCCCCeEEEE
Confidence            34455667656666554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.40  E-value=7.6e-12  Score=125.00  Aligned_cols=216  Identities=13%  Similarity=0.025  Sum_probs=137.4

Q ss_pred             EEEEEcCCCCEEEEEcCC----------cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           89 LHISFNQDHGCFAAGTDH----------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~~----------gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..++|||||++|+.++++          .+.+||+++++......  +.+.+....|+++++.++.+.        ++.|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~--~~~~~~~~~~SPdG~~la~~~--------~~~i  134 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER--IPNNTQWVTWSPVGHKLAYVW--------NNDI  134 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--CCTTEEEEEECSSTTCEEEEE--------TTEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc--CCCcceeeEECCCCCEEEEEE--------CCeE
Confidence            458999999999988762          24599999886532111  356788999999999999886        5789


Q ss_pred             EEEeCCCCcEEEEEeeCC---ce-----------------eEEEEeCCe--EEEEE-C-C--------------------
Q 020784          159 MIWDDHQSRCIGELSFRS---EV-----------------RSVKLRRDR--IIVVL-E-Q--------------------  194 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~---~v-----------------~~v~~~~~~--~~~~~-~-~--------------------  194 (321)
                      .+||..+++... +...+   .+                 .++.|+++.  ++... + .                    
T Consensus       135 ~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~  213 (740)
T 4a5s_A          135 YVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT  213 (740)
T ss_dssp             EEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred             EEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence            999998887543 22211   12                 247788764  33321 0 1                    


Q ss_pred             ---------------EEEEEEcCC---cE--EEEEEec------cCCCCceEEEeeCCCceEEEee---cCCCCcEEEEe
Q 020784          195 ---------------KIFVYNFAD---LK--LLHQIET------IANPKGLCAVSQGVGSLVLVCP---GLQKGQVRVEH  245 (321)
Q Consensus       195 ---------------~I~iwd~~~---~~--~~~~l~~------~~~~~~~~~~s~~~d~~~la~s---Gs~dg~V~i~d  245 (321)
                                     +|++||+.+   ++  ....+..      +...+...++++  |+.++++.   +..+..|.+||
T Consensus       214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp--dg~~~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT--QERISLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             EEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE--TTEEEEEEEESSTTEEEEEEEE
T ss_pred             eeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC--CCeEEEEEeCCCCCEEEEEEEE
Confidence                           588899987   62  2233432      222233445555  55655432   22334688899


Q ss_pred             eCCcc-------eEEe--ecccccee-----EEEECCCCCEEE-EEeCC-C-cEEEEEEcCCCcEEEEEeCCCcceeEEE
Q 020784          246 YASKR-------TKFI--MAHDSRIA-----CFALTQDGQLLA-TSSTK-G-TLVRIFNTLDGTLLQEECCPSISAQSGL  308 (321)
Q Consensus       246 ~~~~~-------~~~l--~~H~~~V~-----~vafspdg~~la-s~S~D-g-t~IrIWd~~tg~~i~~~~~g~~~~~~~~  308 (321)
                      ..++.       ...+  ..|...|.     .++|+|||+.|+ ..|++ | ..|.+||+.+++.. .+..+.......+
T Consensus       292 ~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~  370 (740)
T 4a5s_A          292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIE  370 (740)
T ss_dssp             EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEE
T ss_pred             CCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEE
Confidence            87754       2223  55776665     889999999887 77643 3 23888898877654 4545544444345


Q ss_pred             eecCceEEEe
Q 020784          309 WLSSAWLRVL  318 (321)
Q Consensus       309 s~d~~~la~~  318 (321)
                      ++|+++|+..
T Consensus       371 ~~d~~~i~f~  380 (740)
T 4a5s_A          371 ALTSDYLYYI  380 (740)
T ss_dssp             EECSSEEEEE
T ss_pred             EEeCCEEEEE
Confidence            5778777654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.39  E-value=2e-10  Score=103.42  Aligned_cols=199  Identities=10%  Similarity=0.049  Sum_probs=138.3

Q ss_pred             CCcEEEEEecCCceeEEeeee-----cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCcee
Q 020784          105 DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR  179 (321)
Q Consensus       105 ~~gv~vw~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~  179 (321)
                      +.++.+||.++++........     .+.....+.+  +++.+.++..      .++.|.+||.++++.+.++.....+.
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~------~~~~v~viD~~t~~~~~~i~~~~~p~   87 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVN------NSHVIFAIDINTFKEVGRITGFTSPR   87 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEG------GGTEEEEEETTTCCEEEEEECCSSEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEc------CCCEEEEEECcccEEEEEcCCCCCCc
Confidence            356889999887653221000     0122333443  3445554442      35899999999999988887667788


Q ss_pred             EEEEe-CCeEEEEE--CCEEEEEEcCCcEEEEEEeccC------CCCceEEEeeCCCceEEEeecC-CCCcEEEEeeCCc
Q 020784          180 SVKLR-RDRIIVVL--EQKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPGL-QKGQVRVEHYASK  249 (321)
Q Consensus       180 ~v~~~-~~~~~~~~--~~~I~iwd~~~~~~~~~l~~~~------~~~~~~~~s~~~d~~~la~sGs-~dg~V~i~d~~~~  249 (321)
                      .+.++ ...++++.  ++.|.+||..+++...++....      .+.. +++  + ++.++++ .. .++.|.++|..+.
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~-i~~--~-~~~lyv~-~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQ-MVQ--Y-GKYVYVN-CWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCC-EEE--E-TTEEEEE-ECTTCCEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcce-EEE--E-CCEEEEE-cCCCCCEEEEEECCCC
Confidence            89984 45666766  5799999999999988887655      4443 333  2 3355553 43 4789999998876


Q ss_pred             ceE-EeeccccceeEEEECCCCCEEEEEeCC----------CcEEEEEEcCCCcEEEEEeC--CCcceeEEEeecCceEE
Q 020784          250 RTK-FIMAHDSRIACFALTQDGQLLATSSTK----------GTLVRIFNTLDGTLLQEECC--PSISAQSGLWLSSAWLR  316 (321)
Q Consensus       250 ~~~-~l~~H~~~V~~vafspdg~~las~S~D----------gt~IrIWd~~tg~~i~~~~~--g~~~~~~~~s~d~~~la  316 (321)
                      .+. .+.. ......++++|+|++++++..+          +. |.+||..++++..++..  +.....+++++|+++|.
T Consensus       163 ~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          163 KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred             eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence            543 4433 3456889999999988877655          67 99999999999888865  44566778888898887


Q ss_pred             Ee
Q 020784          317 VL  318 (321)
Q Consensus       317 ~~  318 (321)
                      ++
T Consensus       241 v~  242 (328)
T 3dsm_A          241 WI  242 (328)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.38  E-value=1.6e-10  Score=114.82  Aligned_cols=229  Identities=9%  Similarity=0.011  Sum_probs=145.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-C-----cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC------
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------  151 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~-----gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~------  151 (321)
                      +...+..++|||||++||.+.+ +     .+++||+++++.......  ...+..+.|+++++.++.++.....      
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3346889999999999996654 2     578999998876432211  2235567899999999888733210      


Q ss_pred             ---CCCCCcEEEEeCCCCcE--EEEEee---CCceeEEEEeCCe--EEEEE------CCEEEEEEcCC------cE-EEE
Q 020784          152 ---QYPLNKVMIWDDHQSRC--IGELSF---RSEVRSVKLRRDR--IIVVL------EQKIFVYNFAD------LK-LLH  208 (321)
Q Consensus       152 ---~~~d~~v~iWD~~~~~~--~~~~~~---~~~v~~v~~~~~~--~~~~~------~~~I~iwd~~~------~~-~~~  208 (321)
                         ......|++|++.+++.  ...+..   ...+..+.|+++.  +++..      ...|++||+.+      ++ .++
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence               00124599999988762  222222   2246788898864  44433      35899999975      42 345


Q ss_pred             EEeccCCCCceEEEeeCCCceEEEeecCC---CCcEEEEeeCCcc---eEEeecccc--ceeEEEECCCCCEEEEEeCCC
Q 020784          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYASKR---TKFIMAHDS--RIACFALTQDGQLLATSSTKG  280 (321)
Q Consensus       209 ~l~~~~~~~~~~~~s~~~d~~~la~sGs~---dg~V~i~d~~~~~---~~~l~~H~~--~V~~vafspdg~~las~S~Dg  280 (321)
                      .+..+.... ...++++++  .|++.+..   ++.|.+|+..+..   ...+..|..  .+..++|++++.++++...|+
T Consensus       281 ~l~~~~~~~-~~~~s~dg~--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          281 KLIDNFEGE-YDYVTNEGT--VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEECSSSSC-EEEEEEETT--EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             EeeCCCCcE-EEEEeccCC--EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence            565554433 234666543  33333333   3467778887643   356666654  688899998888999999888


Q ss_pred             c-EEEEEEcCCCcEEEEEeCCCcceeE--EEeecCceEEEe
Q 020784          281 T-LVRIFNTLDGTLLQEECCPSISAQS--GLWLSSAWLRVL  318 (321)
Q Consensus       281 t-~IrIWd~~tg~~i~~~~~g~~~~~~--~~s~d~~~la~~  318 (321)
                      . .|++||+.+|+.++++... .....  .+++++..|++.
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEE
T ss_pred             EEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEE
Confidence            5 1566787789988887543 33333  445677766653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.35  E-value=2.4e-10  Score=102.89  Aligned_cols=196  Identities=11%  Similarity=0.067  Sum_probs=131.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCc-eeEEeee--------ecCCceEEEEEec-CCCeEEEEeCCCCCCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR-EIFRRDF--------ERGGGIGVVEMLF-RCNILALVGGGPDPQYP  154 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~-~~~~~~~--------~~~~~v~~v~~~~-~~~~~~~~sg~~~~~~~  154 (321)
                      .....++|+++|+++++... +.|++|+.+... .+.....        .+-.....+++.+ +++++++-+.      .
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~------~  164 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY------C  164 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS------S
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC------C
Confidence            47889999999998888876 558899875432 2222210        0112456778877 5555544321      2


Q ss_pred             CCcEEEEeCCCCcEEEEEeeC-----------CceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCce
Q 020784          155 LNKVMIWDDHQSRCIGELSFR-----------SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-----------~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                      ++.|++|| .++..+..+...           ..+..++++++  .++++.  ++.|++||..+++.+.++.........
T Consensus       165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence            48899999 567776666422           13788999875  566664  359999999988988888643322233


Q ss_pred             EEEeeCCCceEEEee------cCCCCcEEEEeeCCcceE-Ee---eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          220 CAVSQGVGSLVLVCP------GLQKGQVRVEHYASKRTK-FI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       220 ~~~s~~~d~~~la~s------Gs~dg~V~i~d~~~~~~~-~l---~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      .++...+ +.+++..      ...++.|++|+..++.+. .+   .+|-..+..|+|+|+|.++++.+.+++ |++|++.
T Consensus       244 ~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~-I~~~~~~  321 (329)
T 3fvz_A          244 FAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT-VWKFTLT  321 (329)
T ss_dssp             EEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC-EEEEEEE
T ss_pred             ceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE-EEEEeCC
Confidence            3333333 2333322      344568999998776644 44   467788999999999999999998999 9999975


Q ss_pred             C
Q 020784          290 D  290 (321)
Q Consensus       290 t  290 (321)
                      .
T Consensus       322 ~  322 (329)
T 3fvz_A          322 E  322 (329)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.33  E-value=1e-09  Score=100.24  Aligned_cols=207  Identities=10%  Similarity=0.037  Sum_probs=127.8

Q ss_pred             CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC---CCCCCcEEEEeCCCCcEEEEEeeC------
Q 020784          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIWDDHQSRCIGELSFR------  175 (321)
Q Consensus       105 ~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~---~~~d~~v~iWD~~~~~~~~~~~~~------  175 (321)
                      ++.|.+||..+++.+.....   +....+.++++++.+.++......   .-.+++|.+||..+++.+.++...      
T Consensus        30 d~~v~v~D~~t~~~~~~i~~---g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPT---AFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEEC---CEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             cCeEEEEECCCCeEEEEecC---CCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            34688999988877655442   323378889999988887520000   002477999999999988887653      


Q ss_pred             -CceeEEEEeCC--eEEEEE---CCEEEEEEcCCcEEEEE-EeccCC------C---CceEEEeeCCCceEEEee-----
Q 020784          176 -SEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQ-IETIAN------P---KGLCAVSQGVGSLVLVCP-----  234 (321)
Q Consensus       176 -~~v~~v~~~~~--~~~~~~---~~~I~iwd~~~~~~~~~-l~~~~~------~---~~~~~~s~~~d~~~la~s-----  234 (321)
                       ..+..+.++++  .++++.   ++.|.+||+.+++.+.+ +.....      +   ....+++.  |+.++.+.     
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~--dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG--DGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET--TSSEEEEEECTTS
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC--CCcEEEEEECCCC
Confidence             34667888765  466653   36899999999988877 432110      0   00111111  11111110     


Q ss_pred             --------------------------------cCCCCcEEEEeeCCcceEEeec---------c----ccceeEEEECCC
Q 020784          235 --------------------------------GLQKGQVRVEHYASKRTKFIMA---------H----DSRIACFALTQD  269 (321)
Q Consensus       235 --------------------------------Gs~dg~V~i~d~~~~~~~~l~~---------H----~~~V~~vafspd  269 (321)
                                                      .+.+|.|.++|+..........         +    .....-++|+|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence                                            1223445555543322111110         0    011223799999


Q ss_pred             CCEEEEEeC-----------CCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          270 GQLLATSST-----------KGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       270 g~~las~S~-----------Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      +.++..+..           .++ |.+||+.+++.++++..+. ...+.+++||++|+++
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~-v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~  322 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAE-IWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL  322 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSE-EEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEE
T ss_pred             CCeEEEEEccCCCcccccCCCce-EEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEe
Confidence            776665532           346 9999999999999998888 7788999999999875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=9.9e-10  Score=96.68  Aligned_cols=208  Identities=13%  Similarity=0.084  Sum_probs=143.0

Q ss_pred             CCCEEEEEcCCc-EEEEEecCCceeEEeeeecC-CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 020784           96 DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (321)
Q Consensus        96 dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~  173 (321)
                      .+++|++++.++ |.+||.++++.+..... +. ..+..+.+.+++++++  +       .++.|..||. +++.+.++.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~~~~~~pdG~ilv--s-------~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-EKGWECNSVAATKAGEILF--S-------YSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-CTTCCCCEEEECTTSCEEE--E-------CBSEEEEECT-TSCEEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-CccCCCcCeEECCCCCEEE--e-------CCCCEEEECC-CCCEEEEEc
Confidence            467788888754 78999999998877664 22 3567778889998777  3       2478999999 899888888


Q ss_pred             eC--CceeEEEEeCCe-EEEE-EC--CEEEEEEcCCcEEEEEEeccCC---C-CceEEEeeCCCceEEEeecCCCCcEEE
Q 020784          174 FR--SEVRSVKLRRDR-IIVV-LE--QKIFVYNFADLKLLHQIETIAN---P-KGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (321)
Q Consensus       174 ~~--~~v~~v~~~~~~-~~~~-~~--~~I~iwd~~~~~~~~~l~~~~~---~-~~~~~~s~~~d~~~la~sGs~dg~V~i  243 (321)
                      ..  ..+.++.+.++. ++++ .+  +.|..+|. +++.+.++.....   . .....+...+++.+++ +...++.|..
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv-~~~~~~~v~~  150 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV-PLFATSEVRE  150 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE-EETTTTEEEE
T ss_pred             CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE-EecCCCEEEE
Confidence            65  367777777654 3333 33  35666664 6788877753211   0 0111223455667777 4788899999


Q ss_pred             EeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC-c------ceeEEEeecCceEE
Q 020784          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS-I------SAQSGLWLSSAWLR  316 (321)
Q Consensus       244 ~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~-~------~~~~~~s~d~~~la  316 (321)
                      +|...+.+.++..+ ..+.++.+.++|.++++++.++. |..||..+|+.+.++.... .      ........+|..++
T Consensus       151 ~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v  228 (276)
T 3no2_A          151 IAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI  228 (276)
T ss_dssp             ECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred             ECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence            99884445566554 46778899999999998888888 9999999999999886321 1      12234456676665


Q ss_pred             Ee
Q 020784          317 VL  318 (321)
Q Consensus       317 ~~  318 (321)
                      ..
T Consensus       229 ~~  230 (276)
T 3no2_A          229 CN  230 (276)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.31  E-value=6.1e-09  Score=100.82  Aligned_cols=196  Identities=13%  Similarity=0.119  Sum_probs=140.0

Q ss_pred             cCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC--CCcEEE
Q 020784           94 NQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIG  170 (321)
Q Consensus        94 s~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~--~~~~~~  170 (321)
                      ++++.++++..+ +.|.++|.++.+.+.....  +.....+.++++++.+.+++       .++.|.+||+.  +++.+.
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~-------~dg~V~viD~~~~t~~~v~  234 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVA  234 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEc-------CCCeEEEEECCCCCCcEeE
Confidence            344556666666 4588999999988766654  44566788999999888876       46899999996  888888


Q ss_pred             EEeeCCceeEEEEe----CC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCC---------CCceEEEeeCCCceEEEe
Q 020784          171 ELSFRSEVRSVKLR----RD--RIIVVL--EQKIFVYNFADLKLLHQIETIAN---------PKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       171 ~~~~~~~v~~v~~~----~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~---------~~~~~~~s~~~d~~~la~  233 (321)
                      ++........+.++    ++  .++++.  .++|.++|..+++.++++.....         ...+..+...+++..+++
T Consensus       235 ~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv  314 (567)
T 1qks_A          235 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  314 (567)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence            88877778899998    34  455553  57999999999999998865321         112333333333333333


Q ss_pred             ecCCCCcEEEEeeCCcc-eE-EeeccccceeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCcEEEEEeC
Q 020784          234 PGLQKGQVRVEHYASKR-TK-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~~-~l~~H~~~V~~vafspdg~~las~S-~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      .-...|.|.+.|+.... +. .-.........+.|+|+|++|.++. .+++ |.++|+.+++++..+..
T Consensus       315 ~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          315 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEEC
T ss_pred             EecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEec
Confidence            45778899998876542 22 1122345577899999999887665 4566 99999999999998877

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.30  E-value=1.9e-10  Score=112.91  Aligned_cols=224  Identities=10%  Similarity=-0.007  Sum_probs=137.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE--cCCc-EEEEEecCCceeEEeeeecCCceE---------EEEEe--cCCCe-EEEEeC
Q 020784           83 SPPPTLLHISFNQDHGCFAAG--TDHG-FRIYNCDPFREIFRRDFERGGGIG---------VVEML--FRCNI-LALVGG  147 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg--~~~g-v~vw~~~~~~~~~~~~~~~~~~v~---------~v~~~--~~~~~-~~~~sg  147 (321)
                      .|...|..++|++++.+++.+  +.++ ..||.....+....... +...+.         ...++  ++++. ++++..
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-CCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            355689999999988888877  4444 67998754444333332 222333         34444  78888 777653


Q ss_pred             CCCCCCCCCcEEEEeCC--C-CcEEEEEee------CCceeEEEEeCCe--EEEEE-C----------CEEEEEEcCC--
Q 020784          148 GPDPQYPLNKVMIWDDH--Q-SRCIGELSF------RSEVRSVKLRRDR--IIVVL-E----------QKIFVYNFAD--  203 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~--~-~~~~~~~~~------~~~v~~v~~~~~~--~~~~~-~----------~~I~iwd~~~--  203 (321)
                      .      +..|.+||..  . ++. ..+..      ...+..+.|+++.  ++.+. +          ..|++||+.+  
T Consensus       100 ~------~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A          100 G------DQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             T------TCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             C------CCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            2      3567777765  3 443 33333      2367789999863  55443 2          3899999987  


Q ss_pred             ----cEEEEEEe-ccCCCCceEEEeeCCCceEEEeecCCC-------CcEEEEeeC-Cc---ceEEe-eccccceeEEEE
Q 020784          204 ----LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQK-------GQVRVEHYA-SK---RTKFI-MAHDSRIACFAL  266 (321)
Q Consensus       204 ----~~~~~~l~-~~~~~~~~~~~s~~~d~~~la~sGs~d-------g~V~i~d~~-~~---~~~~l-~~H~~~V~~vaf  266 (321)
                          ++. ..+. .+.......+++  +|+..|++.....       ..|.+|++. ++   ....+ .+|...+..++|
T Consensus       173 ~~~~~~~-~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~  249 (662)
T 3azo_A          173 AADRSAV-RELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW  249 (662)
T ss_dssp             TTCGGGS-EESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred             cccCCce-eEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence                543 3443 333323334454  5667777533222       378889998 45   44444 456789999999


Q ss_pred             CCCCCEEEEEeCCCc-EEEEEEcCCCcEEEEEeCCCcc----------eeEEEeecCceEEEe
Q 020784          267 TQDGQLLATSSTKGT-LVRIFNTLDGTLLQEECCPSIS----------AQSGLWLSSAWLRVL  318 (321)
Q Consensus       267 spdg~~las~S~Dgt-~IrIWd~~tg~~i~~~~~g~~~----------~~~~~s~d~~~la~~  318 (321)
                      +|||+++++++.|+. .|.+||+.++++.. +..++..          ..+.+++++++++.+
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEE
Confidence            999998888888884 15555666777643 3222221          134556677777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.28  E-value=3.5e-10  Score=104.17  Aligned_cols=168  Identities=9%  Similarity=0.092  Sum_probs=121.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCc-----------eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-----------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      +++.+++++...+|++|+.++++||+++..+           ......+  .+ +..+++  +++.++++.        +
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~l--p~-V~~l~f--d~~~L~v~~--------~  105 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI--PD-VIFVCF--HGDQVLVST--------R  105 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC--TT-EEEEEE--ETTEEEEEE--------S
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeC--CC-eeEEEE--CCCEEEEEc--------C
Confidence            6888999999999999999999999875443           1122232  45 888887  788887763        4


Q ss_pred             CcEEEEeCCCCcEEEEE-eeCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +.|++||+.+....... .+...+.++.+.+..+++++ ++.|.+||+.+++..+ +.   .  .+.+++++++|  +++
T Consensus       106 ~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~~---~--~Vs~v~WSpkG--~~v  177 (388)
T 1xip_A          106 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-LA---Q--NVTSFDVTNSQ--LAV  177 (388)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-EE---E--SEEEEEECSSE--EEE
T ss_pred             CcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-cc---C--CceEEEEcCCc--eEE
Confidence            88999998876543333 34456777777665566665 5799999998777643 22   2  35556666666  342


Q ss_pred             ecCCCCcEEEEeeCCcc---eEEe------e---ccccceeEEEECCCCCEEEEE
Q 020784          234 PGLQKGQVRVEHYASKR---TKFI------M---AHDSRIACFALTQDGQLLATS  276 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~---~~~l------~---~H~~~V~~vafspdg~~las~  276 (321)
                       |..||++++|+..+..   ..++      .   +|...|.+|+|.+++.+|++-
T Consensus       178 -g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          178 -LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             -EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             -EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence             7889999999887766   3355      3   478899999999999999884

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.27  E-value=4.3e-09  Score=92.99  Aligned_cols=221  Identities=9%  Similarity=0.036  Sum_probs=135.8

Q ss_pred             CeEEEEEcCCCCEEEE-------Ec-CCcEEEEEecCCceeEEeee---ecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAA-------GT-DHGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        87 ~V~~v~fs~dg~~las-------g~-~~gv~vw~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ...+++|+++|+++++       +. ++++.+||..+++......-   .+...+..+.+..+...+.++.       ..
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-------~~   91 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-------MR   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-------TT
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-------CC
Confidence            4678999999998877       33 46688998777664322110   0124466667766623344444       23


Q ss_pred             CcEEEEeCCCCcEEEE-Eee-----CCceeEEEEeCCe-EEEEEC-----------------CEEEEEEcCCcEEEEEEe
Q 020784          156 NKVMIWDDHQSRCIGE-LSF-----RSEVRSVKLRRDR-IIVVLE-----------------QKIFVYNFADLKLLHQIE  211 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~-~~~-----~~~v~~v~~~~~~-~~~~~~-----------------~~I~iwd~~~~~~~~~l~  211 (321)
                      +.|.+||.+ ++.... ...     ...+..+.+.++. ++++..                 +.|..||.. ++......
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            579999998 765432 221     1247788888754 555543                 356666655 54433322


Q ss_pred             ccCCCCceEEEe--eCCCceEEEeecCCCCcEEEEeeC-Ccce------EEeeccc-cceeEEEECCCCCEEEEEeCCCc
Q 020784          212 TIANPKGLCAVS--QGVGSLVLVCPGLQKGQVRVEHYA-SKRT------KFIMAHD-SRIACFALTQDGQLLATSSTKGT  281 (321)
Q Consensus       212 ~~~~~~~~~~~s--~~~d~~~la~sGs~dg~V~i~d~~-~~~~------~~l~~H~-~~V~~vafspdg~~las~S~Dgt  281 (321)
                      .... ...++++  .++++..+.++...++.|.+|+.. .+.+      ..+..+. ..+..++++++|.++++...++.
T Consensus       170 ~~~~-~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          170 AFQF-PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EESS-EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCCC-cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            2211 1233444  115655444345667889998865 3321      2334444 67899999999999998877888


Q ss_pred             EEEEEEcCCCcEEEEEeCC-CcceeEEEeecCceEEEe
Q 020784          282 LVRIFNTLDGTLLQEECCP-SISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       282 ~IrIWd~~tg~~i~~~~~g-~~~~~~~~s~d~~~la~~  318 (321)
                       |.+||..+|+.+..+... .....+.++.++++|.++
T Consensus       249 -i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~  285 (314)
T 1pjx_A          249 -IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             -EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             -EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence             999999988877777544 234455667888866654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=2e-10  Score=105.82  Aligned_cols=169  Identities=14%  Similarity=0.140  Sum_probs=118.7

Q ss_pred             ceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc-----------EEEEEeeCCceeEEEEeCCeEEEEECCEEE
Q 020784          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELSFRSEVRSVKLRRDRIIVVLEQKIF  197 (321)
Q Consensus       129 ~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~-----------~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~  197 (321)
                      .+..++++....++++++        ...+++|+++..+           ....+.+.. |+.+.|....++++.++.|+
T Consensus        39 ~~nlLais~~~gll~a~~--------~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAAS--------GSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEE--------TTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEE
T ss_pred             cccEEEEcCCCCEEEEeC--------CCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEE
Confidence            577888888888887776        2478889864332           123445666 99999977788888788999


Q ss_pred             EEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEe
Q 020784          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       198 iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S  277 (321)
                      +||+++......+..+...  +..+.+-+. . +|+ ++.||.|.+|++..+....   +...|+|++|||+|  ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~--v~~i~~~~p-~-~av-~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKP--VFQLKNVNN-T-LVI-LNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSC--EEEEEECSS-E-EEE-EETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhhccCccceeecc--eeeEEecCC-C-EEE-EECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence            9999776555555555433  344444433 2 442 6889999999998665433   56789999999999  67788


Q ss_pred             CCCcEEEEEEcCCCcE--EEEE------eC--CCcceeEEE--eecCceEEE
Q 020784          278 TKGTLVRIFNTLDGTL--LQEE------CC--PSISAQSGL--WLSSAWLRV  317 (321)
Q Consensus       278 ~Dgt~IrIWd~~tg~~--i~~~------~~--g~~~~~~~~--s~d~~~la~  317 (321)
                      .||+ |++|+...+++  .+++      ..  ++.....++  ..+++||++
T Consensus       180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            8999 99999988886  6666      21  234444444  455677754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.24  E-value=1.6e-08  Score=92.86  Aligned_cols=218  Identities=10%  Similarity=-0.079  Sum_probs=139.2

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEecCCceeEEeeee------cCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        90 ~v~fs~dg~~lasg~-----------~~gv~vw~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      .++|+|||++|+++.           ++.|.+||..+.+........      +...-..+.++++++.+.++...    
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----
Confidence            799999999998875           245779999888766554430      01123356788999988887632    


Q ss_pred             CCCCcEEEEeCCCCcEEEE-EeeCCceeEEEEeCCeEE-EEECCEEEEEEcCCcEEEEEEe-----ccCCCCc-eEEEee
Q 020784          153 YPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRII-VVLEQKIFVYNFADLKLLHQIE-----TIANPKG-LCAVSQ  224 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~-~~~~~~v~~v~~~~~~~~-~~~~~~I~iwd~~~~~~~~~l~-----~~~~~~~-~~~~s~  224 (321)
                       .++.|.++| .+++.+.+ +.....+......+..++ .+.++++.++|. +++.+....     ....+.. ...+..
T Consensus       146 -~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          146 -AGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             -CCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence             247899999 99998887 665544322222223333 334679999999 777664332     1111111 123344


Q ss_pred             CCCceEEEeecCCCCcEEEEeeCCcceE---Eeec----------cccceeEEEECCCCCEEEEEeC----------CCc
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMA----------HDSRIACFALTQDGQLLATSST----------KGT  281 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~~~~~---~l~~----------H~~~V~~vafspdg~~las~S~----------Dgt  281 (321)
                      +++ .++..  +..|.|.+.|.......   .+.-          .......++|+|||..|..+..          .+.
T Consensus       223 ~~~-~~~~~--~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~  299 (373)
T 2mad_H          223 KSG-RIVWP--VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             cCC-EEEEE--cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence            433 33332  35678888887544222   2211          1122445889999887666543          346


Q ss_pred             EEEEEEcCCCcEEEEEeCCCcceeEEEeecCc-eEEEe
Q 020784          282 LVRIFNTLDGTLLQEECCPSISAQSGLWLSSA-WLRVL  318 (321)
Q Consensus       282 ~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~-~la~~  318 (321)
                       |.|+|+.+++.++++..+.....+.+++||+ .|.++
T Consensus       300 -V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          300 -VTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             -EEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEE
Confidence             9999999999999998888888889999999 55554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.24  E-value=4.3e-10  Score=111.51  Aligned_cols=226  Identities=11%  Similarity=-0.025  Sum_probs=136.6

Q ss_pred             CCCCeEEEEEcCCCCEEE-----EEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC------
Q 020784           84 PPPTLLHISFNQDHGCFA-----AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------  151 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~la-----sg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~------  151 (321)
                      |...+.+++|||||++||     .|++ ..|++||+++++....... .......+.|++++..++.++.....      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            444689999999999999     3433 3488999998875301111 11112567899999998888732100      


Q ss_pred             CCCCCcEEEEeCCCCcE--EEEEee--C-CceeEEEEeCCe--EEEEE-CC----EEEEEEcCCcEEEEEEeccCCCCce
Q 020784          152 QYPLNKVMIWDDHQSRC--IGELSF--R-SEVRSVKLRRDR--IIVVL-EQ----KIFVYNFADLKLLHQIETIANPKGL  219 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~~--~~~~~~--~-~~v~~v~~~~~~--~~~~~-~~----~I~iwd~~~~~~~~~l~~~~~~~~~  219 (321)
                      ......|++|++.++..  ...+..  + ..+..+.|+++.  +++.. ++    .|.+|+..+++. +.+..+......
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~  276 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYE  276 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEE
Confidence            00123499999988762  222222  2 357788998864  44432 33    677777655543 444443332222


Q ss_pred             EEEeeCCCceEEEeecC---CCCcEEEEeeCCcc---eEEeecc--ccceeEEEECCCCCEEEEEeCCCcEEEEEEcC-C
Q 020784          220 CAVSQGVGSLVLVCPGL---QKGQVRVEHYASKR---TKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D  290 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs---~dg~V~i~d~~~~~---~~~l~~H--~~~V~~vafspdg~~las~S~Dgt~IrIWd~~-t  290 (321)
                      . +.+++  .+++. ..   .++.|.+|++.+..   ...+..|  ...|..++|+ ++.++++.+.|+. .+||.+. +
T Consensus       277 ~-~~~~g--~l~~~-s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~  350 (695)
T 2bkl_A          277 V-HAWKD--RFYVL-TDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK  350 (695)
T ss_dssp             E-EEETT--EEEEE-ECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT
T ss_pred             E-EecCC--cEEEE-ECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC
Confidence            2 23443  34442 33   35788889986543   2444444  4568889998 7889999999998 8999775 5


Q ss_pred             CcEEEEEeCCCccee--EEEeecCceEEE
Q 020784          291 GTLLQEECCPSISAQ--SGLWLSSAWLRV  317 (321)
Q Consensus       291 g~~i~~~~~g~~~~~--~~~s~d~~~la~  317 (321)
                      |+.++++........  +.+++|++.|++
T Consensus       351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~  379 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNLMGLEDLDDAYY  379 (695)
T ss_dssp             CCEEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred             CCeeEEecCCCCeEEEEeecCCCCCEEEE
Confidence            777776643222222  244567776664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.23  E-value=1.9e-08  Score=97.36  Aligned_cols=219  Identities=13%  Similarity=0.032  Sum_probs=146.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEEec--CCceeEEeeeecCCceEEEEEe----cCCCeEEEEeCCCCCCCCCCcEE
Q 020784           87 TLLHISFNQDHGCFAAGTDH-GFRIYNCD--PFREIFRRDFERGGGIGVVEML----FRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~-gv~vw~~~--~~~~~~~~~~~~~~~v~~v~~~----~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .+.++.|+|||++|++++.+ .|.+||+.  +.+.+.....  +..-..++++    ++++.++++..      .+++|.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~------~~~~v~  269 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAY------WPPQYV  269 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEE------ETTEEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEc------cCCeEE
Confidence            57799999999999888775 57899995  6666554442  4455677888    58888877763      468999


Q ss_pred             EEeCCCCcEEEEEeeCC------------ceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEE--EEeccCCCCceEE
Q 020784          160 IWDDHQSRCIGELSFRS------------EVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH--QIETIANPKGLCA  221 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~------------~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~--~l~~~~~~~~~~~  221 (321)
                      |+|..+.+.+..+....            .+..+..+++  .+++..  .++|.++|..+.+.+.  .+...   .....
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~---~~~~d  346 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE---RFLHD  346 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC---SSEEE
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc---ccccC
Confidence            99999999888765421            3556666543  333333  3699999987653322  23221   12334


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcceE-Eee-----ccccceeEEE-ECCC-CCEEEEEe-CCCcEEEEEEcCC--
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM-----AHDSRIACFA-LTQD-GQLLATSS-TKGTLVRIFNTLD--  290 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~-----~H~~~V~~va-fspd-g~~las~S-~Dgt~IrIWd~~t--  290 (321)
                      +.+++++.++.++...++.|.++|..++.+. .+.     .|-+  +.+. ++|+ |..++|+. .+++ |.|+|+.+  
T Consensus       347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~-Vsvid~~~~~  423 (567)
T 1qks_A          347 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDS-VALIGTDPEG  423 (567)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSE-EEEEECCTTT
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCe-EEEecCCCCC
Confidence            4556677766555566789999999877643 232     2432  2222 5787 55556654 3578 99999998  


Q ss_pred             -----CcEEEEEeCC-CcceeEEEeecCceEEEee
Q 020784          291 -----GTLLQEECCP-SISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       291 -----g~~i~~~~~g-~~~~~~~~s~d~~~la~~~  319 (321)
                           .+.++++... .....+.+++++++|-|..
T Consensus       424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence                 7789998753 3334567789999988864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.23  E-value=1.4e-08  Score=89.84  Aligned_cols=217  Identities=8%  Similarity=0.017  Sum_probs=137.1

Q ss_pred             CeEEEEEcCCCC-EEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~-~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      --.+..|++++. ++.+... +.|..||.++.+.. ....  ...+..+.+.+++++++. .        ++.|.+||.+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~--~~~~~~i~~~~dG~l~v~-~--------~~~l~~~d~~   81 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM--DAPVSSVALRQSGGYVAT-I--------GTKFCALNWK   81 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC--SSCEEEEEEBTTSSEEEE-E--------TTEEEEEETT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC--CCceEEEEECCCCCEEEE-E--------CCeEEEEECC
Confidence            345788999654 5555554 55889998876542 2332  567888888888884443 3        3679999998


Q ss_pred             CCcEEEEEeeC-----CceeEEEEeCCe-EEEEE-----------CCEEEEEEcC-CcEEEEEEeccCCCCceEEEeeCC
Q 020784          165 QSRCIGELSFR-----SEVRSVKLRRDR-IIVVL-----------EQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       165 ~~~~~~~~~~~-----~~v~~v~~~~~~-~~~~~-----------~~~I~iwd~~-~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      +++........     ..+..+.+.++. +++++           .....+|.+. .++........ ..  ...+..++
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~-~~--pngi~~sp  158 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV-DI--SNGLDWSL  158 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE-SB--EEEEEECT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc-cc--ccceEEcC
Confidence            87754333221     246778888754 55543           1234555553 23332222221 11  22334445


Q ss_pred             CceEEEeecCCCCcEEEEeeC--Ccce------EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          227 GSLVLVCPGLQKGQVRVEHYA--SKRT------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~--~~~~------~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      |+..+.++.+.++.|.++++.  ++.+      ..+..+...+..++++++|.+.++...++. |.+||..+|+++.++.
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEE
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEE
Confidence            555554446777889888863  3322      133345567899999999998888877777 9999999999999887


Q ss_pred             CCC-cceeEEEe-ecCceEEEee
Q 020784          299 CPS-ISAQSGLW-LSSAWLRVLR  319 (321)
Q Consensus       299 ~g~-~~~~~~~s-~d~~~la~~~  319 (321)
                      ... ....++|. +|++.|.+..
T Consensus       238 ~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          238 LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCCCceEEEEeCCCCCEEEEEc
Confidence            653 33445666 6777776654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.18  E-value=2.8e-09  Score=95.26  Aligned_cols=195  Identities=12%  Similarity=0.096  Sum_probs=123.6

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~-~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ..|.+++|++++..++..+ ++.++.|.-   +....... +......+.+.++++++++..       .++.|.+||.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~-------~~~~i~~~d~~   74 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPWLEISK-KGLQLEGLNFDRQGQLFLLDV-------FEGNIFKINPE   74 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEEEEEES-SCCCEEEEEECTTSCEEEEET-------TTCEEEEECTT
T ss_pred             cccceeeecCCccceeEEeecccCccccc---ceeEEEec-cCccccCcEECCCCCEEEEEC-------CCCEEEEEeCC
Confidence            3577888999887776554 466778832   22212221 234567778888877554444       45889999999


Q ss_pred             CCcEEEEE-eeCCceeEEEEeCCe-EEEEEC------CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          165 QSRCIGEL-SFRSEVRSVKLRRDR-IIVVLE------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       165 ~~~~~~~~-~~~~~v~~v~~~~~~-~~~~~~------~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      +++..... .....+.++.++++. ++++..      +.|.+||..+++....+...........+..++++.+++. ..
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~~  153 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-DF  153 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEE-EC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEE-ec
Confidence            88765544 334578999998764 555543      3899999987665433332222234555666667777663 32


Q ss_pred             C------CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCC-CcE
Q 020784          237 Q------KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLD-GTL  293 (321)
Q Consensus       237 ~------dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~t-g~~  293 (321)
                      .      .+.|..++..++....+..+...++.++|+|+|++| ++.+.++. |.+||+.+ |+.
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~  217 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVT  217 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSS
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcC
Confidence            2      244555555544555554555678999999999855 55556778 99999974 443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.17  E-value=8.3e-09  Score=92.55  Aligned_cols=207  Identities=9%  Similarity=0.052  Sum_probs=127.0

Q ss_pred             CeEEEEEcCCCCEEEEEc----------CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~----------~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      .+...+|  ||++++...          ...+.+|++++++....      ..+....++++++.+++++....  ....
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~--~~~~   85 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEE--KKVS   85 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETT--TTEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccC--CCcc
Confidence            6778888  999887542          12366888877654221      24667789999999988763210  0013


Q ss_pred             cEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE-C---------------------------CEEEEEEcCCcEE
Q 020784          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-E---------------------------QKIFVYNFADLKL  206 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~-~---------------------------~~I~iwd~~~~~~  206 (321)
                      .|.+||+.+++......... +..+.|+++  .++.+. +                           ..|.+||+.+++.
T Consensus        86 ~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           86 EIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             eEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            48888998887766555555 888999875  355543 2                           4799999998887


Q ss_pred             EEEEeccCCCCceEEEeeCCCceEEEeecCCC------C-cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCC
Q 020784          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQK------G-QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (321)
Q Consensus       207 ~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d------g-~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~D  279 (321)
                      ++.+.. . .+...++++  |+ ++++ +..+      . ...||.+.++....+..+ ..+..+  +|||++||.++.+
T Consensus       165 ~~~l~~-~-~~~~~~~sp--dg-~~~~-~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          165 IEEFEK-P-RFSSGIWHR--DK-IVVN-VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             EEEEEE-E-TTCEEEEET--TE-EEEE-EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred             EeeecC-C-CcccccCCC--Ce-EEEE-EecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence            556655 2 444555554  55 4443 4332      2 344443335555556556 555554  9999999888755


Q ss_pred             C-------cEEEEEEcCCCcEEEEEeCCCccee---EEEeecCceEEEe
Q 020784          280 G-------TLVRIFNTLDGTLLQEECCPSISAQ---SGLWLSSAWLRVL  318 (321)
Q Consensus       280 g-------t~IrIWd~~tg~~i~~~~~g~~~~~---~~~s~d~~~la~~  318 (321)
                      +       ..|.+||  +++.. .+..++....   ..++ |+ +++++
T Consensus       236 ~~~~~~~~~~l~~~d--~~~~~-~l~~~~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GKEVM-GILDEVDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SSCEE-ESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred             ccCCccccceEEEEC--CCceE-eccccCCcccCCccEEc-Cc-EEEEE
Confidence            3       2277777  66653 3433433222   3455 66 55443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.14  E-value=6.7e-09  Score=91.33  Aligned_cols=159  Identities=14%  Similarity=0.076  Sum_probs=115.6

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCC--ceeEEEEeCCe-EEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~~-~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      .++.|.+||.++|+.+.++..+.  .+..+.+.++. ++++.++.|..||. +++.+.++..+.. .........+++.+
T Consensus        13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~-~~~~~~~~~~dG~~   90 (276)
T 3no2_A           13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAG-CEMQTARILPDGNA   90 (276)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTT-CEEEEEEECTTSCE
T ss_pred             CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCC-ccccccEECCCCCE
Confidence            46999999999999998888764  67888887764 44455679999999 8999999887422 22344455567777


Q ss_pred             EEeecCC-CCcEEEEeeCCcceEEee------ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc
Q 020784          231 LVCPGLQ-KGQVRVEHYASKRTKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS  303 (321)
Q Consensus       231 la~sGs~-dg~V~i~d~~~~~~~~l~------~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~  303 (321)
                      +++ .+. ++.|..++...+.+..+.      .+...++.+++.++|.+|++.+.++. |..||.. |+.+.++..+...
T Consensus        91 lv~-~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-G~~~w~~~~~~~~  167 (276)
T 3no2_A           91 LVA-WCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-GQLLNSVKLSGTP  167 (276)
T ss_dssp             EEE-EESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-SCEEEEEECSSCC
T ss_pred             EEE-ecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-CCEEEEEECCCCc
Confidence            774 343 566666666544444443      23345777889999999999999999 9999998 9999999766554


Q ss_pred             eeEEEeecCceEEE
Q 020784          304 AQSGLWLSSAWLRV  317 (321)
Q Consensus       304 ~~~~~s~d~~~la~  317 (321)
                      .......+|..|.+
T Consensus       168 ~~~~~~~~g~~~v~  181 (276)
T 3no2_A          168 FSSAFLDNGDCLVA  181 (276)
T ss_dssp             CEEEECTTSCEEEE
T ss_pred             cceeEcCCCCEEEE
Confidence            44555667766644

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.13  E-value=9.1e-09  Score=102.71  Aligned_cols=225  Identities=8%  Similarity=-0.000  Sum_probs=137.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC------cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC-------C
Q 020784           86 PTLLHISFNQDHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-------Q  152 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~------gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~-------~  152 (321)
                      ..+..++|||||++||.+.++      .|++||+++++.... .. +...+..+.|+++ +.++.+......       .
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            368899999999999976542      378999998876432 11 1111245678899 888877632110       0


Q ss_pred             CCCCcEEEEeCCCCcE--EEEEeeCC---ceeEEEEeCCe--EEEEE-C-----CEEEEEEcCCcE-E-EEEEeccCCCC
Q 020784          153 YPLNKVMIWDDHQSRC--IGELSFRS---EVRSVKLRRDR--IIVVL-E-----QKIFVYNFADLK-L-LHQIETIANPK  217 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~--~~~~~~~~---~v~~v~~~~~~--~~~~~-~-----~~I~iwd~~~~~-~-~~~l~~~~~~~  217 (321)
                      -....|++|++.++..  ...+....   .+..+.|+++.  +++.. +     ..|++||+.++. . ...+..+....
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence            0034599999987652  22233222   37788898875  44433 2     389999997762 1 45555443322


Q ss_pred             ceEEEeeCCCceEEEeecCC---CCcEEEEeeCCc--ceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC-C
Q 020784          218 GLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYASK--RTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D  290 (321)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~---dg~V~i~d~~~~--~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~-t  290 (321)
                       ...+++++  ..|++....   ++.|.+|+....  ... .+..+...+..++|+ ++.++++...|+. .+||.+. +
T Consensus       320 -~~~~~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~  394 (741)
T 1yr2_A          320 -WDFVDGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD  394 (741)
T ss_dssp             -EEEEEEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT
T ss_pred             -EEEEeccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC
Confidence             22234444  333332222   456888888763  333 344555667788888 6778899999998 8888765 5


Q ss_pred             CcEEEEEeCCCccee--EEEeecCceEEEe
Q 020784          291 GTLLQEECCPSISAQ--SGLWLSSAWLRVL  318 (321)
Q Consensus       291 g~~i~~~~~g~~~~~--~~~s~d~~~la~~  318 (321)
                      |+..+++........  +.+++|++.|++.
T Consensus       395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             SCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred             CCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence            777777653222222  3455778777653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=1.3e-08  Score=93.51  Aligned_cols=219  Identities=11%  Similarity=-0.022  Sum_probs=141.7

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEecCCceeEEeeeec------CCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        90 ~v~fs~dg~~lasg~-----------~~gv~vw~~~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      .++++|||++|.++.           ++.|.+||..+.+.+.......      +..-..+.++++++.+.++...    
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----  157 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----  157 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----
Confidence            399999999887664           2458899999988766655310      0123346788999988877632    


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeE-EEEECCEEEEEEcCC-cEEEEEEeccCCC----Cce-EEEeeC
Q 020784          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVVLEQKIFVYNFAD-LKLLHQIETIANP----KGL-CAVSQG  225 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~~I~iwd~~~-~~~~~~l~~~~~~----~~~-~~~s~~  225 (321)
                       .++.|.++|+.+++.+.++.........-.....+ .++.++++-+.++.. ++...+.......    ... ..+. .
T Consensus       158 -~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~  235 (386)
T 3sjl_D          158 -PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-Q  235 (386)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-T
T ss_pred             -CCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE-c
Confidence             24889999999999999887655321111223333 445577888888865 5543322111111    111 1222 2


Q ss_pred             CCceEEEeecCCCCcEEEEeeCCcceEEeecc-------------ccceeEEEECCCCCEEEEEeC----------CCcE
Q 020784          226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-------------DSRIACFALTQDGQLLATSST----------KGTL  282 (321)
Q Consensus       226 ~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H-------------~~~V~~vafspdg~~las~S~----------Dgt~  282 (321)
                      +++.++.+  +.+|.|.+.|............             ......+++++++..|.....          .++ 
T Consensus       236 ~dG~~~~v--s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~-  312 (386)
T 3sjl_D          236 KAGRLVWP--TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF-  312 (386)
T ss_dssp             TTTEEEEE--BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE-
T ss_pred             CCCcEEEE--eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE-
Confidence            45655443  4578999999876543322211             234556888999877665532          135 


Q ss_pred             EEEEEcCCCcEEEEEeCCCcceeEEEeecCc-eEEE
Q 020784          283 VRIFNTLDGTLLQEECCPSISAQSGLWLSSA-WLRV  317 (321)
Q Consensus       283 IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~-~la~  317 (321)
                      |-+.|+.+++.++++..+.....+.+++|++ +|.+
T Consensus       313 V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          313 VVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             EEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEE
T ss_pred             EEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEE
Confidence            8899999999999998888777889999997 5544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.12  E-value=1.3e-08  Score=88.00  Aligned_cols=215  Identities=9%  Similarity=-0.052  Sum_probs=128.4

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ...+++++++|++++ +... ++|.+|+..+..... ....+......+++..+++ +.++.       .++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~-l~v~~-------~~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGAGT-VYVTD-------FNNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTTCC-EEEEE-------TTTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCCCC-EEEEc-------CCCEEEEEeCC
Confidence            578899999999777 4344 568888865543321 1110123455667777777 44444       14789999987


Q ss_pred             CCcEEEEEeeC--CceeEEEEeCCe-EEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          165 QSRCIGELSFR--SEVRSVKLRRDR-IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       165 ~~~~~~~~~~~--~~v~~v~~~~~~-~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      .+... .+...  ..+..+.+.++. ++++.  ++.|.+|+..+................+++  ++++.++++ ...++
T Consensus        96 ~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~--~~~g~l~v~-~~~~~  171 (270)
T 1rwi_B           96 SNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV--DNSGNVYVT-DTDNN  171 (270)
T ss_dssp             CSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE--CTTCCEEEE-EGGGT
T ss_pred             CceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE--eCCCCEEEE-ECCCC
Confidence            65443 22222  468889988653 55554  368999987554332211111112223444  445566653 55567


Q ss_pred             cEEEEeeCCcceEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC-CcceeEEEeecCceE
Q 020784          240 QVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP-SISAQSGLWLSSAWL  315 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g-~~~~~~~~s~d~~~l  315 (321)
                      .|.+++......... ..+...+..|+++++|.++++...++. |++||............+ .....+.+..+|+.+
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence            899998776554432 234467899999999998888877888 999998766543322122 223445666777643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.11  E-value=7.7e-08  Score=89.35  Aligned_cols=196  Identities=12%  Similarity=0.077  Sum_probs=128.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .....++|+++|+++++... +.|++||.++.........  ..... +++.++++.++++...     ..+.|.+||..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~-----~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWE-----GTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSS-----TTCEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecC-----CCceEEEEEcC
Confidence            36789999999998777766 5588999887665433331  22223 7888888877777632     11278999987


Q ss_pred             CCcEEEEE----e-eCCceeEEEEeC-C-eEEEEE-CCEEEEEEcCCcEEEEEE-----eccCCCC--ceEEEeeCCCce
Q 020784          165 QSRCIGEL----S-FRSEVRSVKLRR-D-RIIVVL-EQKIFVYNFADLKLLHQI-----ETIANPK--GLCAVSQGVGSL  229 (321)
Q Consensus       165 ~~~~~~~~----~-~~~~v~~v~~~~-~-~~~~~~-~~~I~iwd~~~~~~~~~l-----~~~~~~~--~~~~~s~~~d~~  229 (321)
                      .+.....+    . ....+.++.+++ + .++++. ++.|+.||..++.. ..+     .......  .-++++++ ++.
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~-~g~  280 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFV-DSN  280 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETT-TTE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCC-CCE
Confidence            66543333    1 224577888887 3 455543 25899999976653 233     1111111  14455543 345


Q ss_pred             EEEeecCCCCcEEEEeeCCcceEEeeccc---------------cceeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCcE
Q 020784          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHD---------------SRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL  293 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~~~~l~~H~---------------~~V~~vafspdg~~las~S-~Dgt~IrIWd~~tg~~  293 (321)
                      +++ +...++.|+.++.... ...+.++.               .....|+|+++|.++++-+ .++. |++|++.+|++
T Consensus       281 lyv-~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v  357 (409)
T 3hrp_A          281 FYM-SDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYV  357 (409)
T ss_dssp             EEE-EETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEE
T ss_pred             EEE-EeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEE
Confidence            555 3677788888886544 44444442               4589999999999888877 7777 99999988875


Q ss_pred             E
Q 020784          294 L  294 (321)
Q Consensus       294 i  294 (321)
                      .
T Consensus       358 ~  358 (409)
T 3hrp_A          358 S  358 (409)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.10  E-value=2.7e-09  Score=105.78  Aligned_cols=199  Identities=12%  Similarity=-0.033  Sum_probs=125.6

Q ss_pred             EEEEEcCCCCEEEEEcC-Cc-------------EEEEEecCCce--eEEeeee-cCCceEEEEEecCCCeEEEEeCCCCC
Q 020784           89 LHISFNQDHGCFAAGTD-HG-------------FRIYNCDPFRE--IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDP  151 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~-~g-------------v~vw~~~~~~~--~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~  151 (321)
                      ..++|+|||+.|+.++. .+             |.+|++.+...  ....... +...+..+.++++++.+++.+.... 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-
Confidence            67999999999987765 33             88999987752  1222210 2245677889999998888773210 


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEEC-----CEEEEEEcCCcEE--EEEEeccCCCCceEEEee
Q 020784          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-----QKIFVYNFADLKL--LHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-----~~I~iwd~~~~~~--~~~l~~~~~~~~~~~~s~  224 (321)
                        ....|.+||..+++..........+....++...+++.++     ..|.+||+.+++.  ...+..+.....+..++.
T Consensus       250 --~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~  327 (695)
T 2bkl_A          250 --SENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI  327 (695)
T ss_dssp             --TEEEEEEECTTCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE
T ss_pred             --CceEEEEEcCCCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE
Confidence              1236778877666544333333344444455544555554     5899999976542  233433321222333444


Q ss_pred             CCCceEEEeecCCCCcEEEEeeC--CcceEEeecc-ccceeEEEECCCCCEEE----EEeCCCcEEEEEEcCCCcE
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAH-DSRIACFALTQDGQLLA----TSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~--~~~~~~l~~H-~~~V~~vafspdg~~la----s~S~Dgt~IrIWd~~tg~~  293 (321)
                      . ++.+++ +...||..+||.+.  .+....+..+ .+.|..++++|++..|+    +...+++ |.+||+.+|+.
T Consensus       328 ~-~~~lv~-~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~-v~~~d~~~g~~  400 (695)
T 2bkl_A          328 V-GGHLSL-EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ-IYKTSVSTGKS  400 (695)
T ss_dssp             E-TTEEEE-EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE-EEEEETTTCCE
T ss_pred             E-CCEEEE-EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE-EEEEECCCCcE
Confidence            4 345555 57889988886554  4445566655 67789999999998776    3334577 99999999874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.09  E-value=4e-07  Score=81.60  Aligned_cols=214  Identities=8%  Similarity=0.001  Sum_probs=133.3

Q ss_pred             CeEEEEEcCCCC-EEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~-~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      -..+.+|++++. ++.++.. ++|.+||.++.+.. ....  ...+..+.+.+++++++...         +.|.+||.+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~--~~~v~~i~~~~dg~l~v~~~---------~gl~~~d~~  117 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKISDSKQLIASD---------DGLFLRDTA  117 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETTEEEEEET---------TEEEEEETT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC--CCcceEEEEeCCCeEEEEEC---------CCEEEEECC
Confidence            356889999854 5556655 56888988776542 2232  45678888888877655432         459999998


Q ss_pred             CCcEEEEEeeC-----CceeEEEEeCCe-EEEEEC--------CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          165 QSRCIGELSFR-----SEVRSVKLRRDR-IIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       165 ~~~~~~~~~~~-----~~v~~v~~~~~~-~~~~~~--------~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      +++........     ..+..+.++++. +++++.        +.|..++  +++... +......  ...+..++|+..
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~--~~~i~~s~dg~~  192 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISI--PNSICFSPDGTT  192 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESS--EEEEEECTTSCE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcc--cCCeEEcCCCCE
Confidence            88754332221     246778888764 455432        2455555  455432 3222111  233444555555


Q ss_pred             EEeecCCCCcEEEEeeC--Cc-ce------EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          231 LVCPGLQKGQVRVEHYA--SK-RT------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~--~~-~~------~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      +.++.+.++.|.+++..  ++ .+      ..+..+...+..++++++|.+.++...++. |.+||. +|+.+.++....
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~~~  270 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEVPG  270 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEECSC
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEECCC
Confidence            54446667889998874  33 21      123334566889999999998887766778 999998 788888876543


Q ss_pred             c-ceeEEEe-ecCceEEEee
Q 020784          302 I-SAQSGLW-LSSAWLRVLR  319 (321)
Q Consensus       302 ~-~~~~~~s-~d~~~la~~~  319 (321)
                      . ...++|. .++..|.++.
T Consensus       271 ~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          271 KQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             SBEEEEEEESTTSCEEEEEE
T ss_pred             CCcEEEEEecCCCCEEEEEe
Confidence            2 3344665 6777776643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.09  E-value=1e-08  Score=88.52  Aligned_cols=196  Identities=8%  Similarity=-0.044  Sum_probs=127.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ..+.+++|+++|+++++..++.|.+||.+..... ............+.+.+++++++...       .++.|.+||..+
T Consensus        67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-------~~~~i~~~~~~~  138 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADR-------GNNRVVKLAAGS  138 (270)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEG-------GGTEEEEECTTC
T ss_pred             CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEEC-------CCCEEEEEECCC
Confidence            3577899999999777766556888987654432 22210124566777777777554433       247899998765


Q ss_pred             CcEEEEEe-eCCceeEEEEeCC-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcE
Q 020784          166 SRCIGELS-FRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (321)
Q Consensus       166 ~~~~~~~~-~~~~v~~v~~~~~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V  241 (321)
                      ........ ....+..+++.++ .++++.  ++.|.+||............+  ......+..++++.+.+ +...++.|
T Consensus       139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~g~l~v-~~~~~~~v  215 (270)
T 1rwi_B          139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYV-TEHNTNQV  215 (270)
T ss_dssp             CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS--CCSEEEEEECTTCCEEE-EETTTSCE
T ss_pred             ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC--CCCceEEEECCCCCEEE-EECCCCcE
Confidence            54332211 1235778888864 455554  369999998776543322211  12345566666666666 35667889


Q ss_pred             EEEeeCCcceEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          242 RVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       242 ~i~d~~~~~~~~l~-~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      .+++........+. .+...+.+|+++++|+++++.+.+++ |+++++...+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-v~~~~~~~~~~  267 (270)
T 1rwi_B          216 VKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR-VVKLTSLEHHH  267 (270)
T ss_dssp             EEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE-EEEECCCGGGS
T ss_pred             EEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE-EEEEcCCCccc
Confidence            99987665544332 34467999999999999999998999 99999876543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=1.4e-07  Score=87.55  Aligned_cols=224  Identities=10%  Similarity=0.029  Sum_probs=139.4

Q ss_pred             CCCCEEEEEcC--CcEEEEEecCC--ceeEEeeee-------cCC-ceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           95 QDHGCFAAGTD--HGFRIYNCDPF--REIFRRDFE-------RGG-GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        95 ~dg~~lasg~~--~gv~vw~~~~~--~~~~~~~~~-------~~~-~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .++++|.+.+.  +.|.|+|+.+.  +........       .+. .--.+.+.+++ .++.+.|+.++ -..+.|.+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g-~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEG-EGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTS-CSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCC-CCCCeEEEEE
Confidence            88998887665  45889998644  222222210       010 11234556777 55544433211 1347899999


Q ss_pred             CCCCcEEEEEeeCC----ceeEEEEeCCe--EEEEE--------------------CCEEEEEEcCCcEEEEEEeccCCC
Q 020784          163 DHQSRCIGELSFRS----EVRSVKLRRDR--IIVVL--------------------EQKIFVYNFADLKLLHQIETIANP  216 (321)
Q Consensus       163 ~~~~~~~~~~~~~~----~v~~v~~~~~~--~~~~~--------------------~~~I~iwd~~~~~~~~~l~~~~~~  216 (321)
                      .++++.+.++....    -.+.+.|++++  +++..                    +++|.+||+.+++.++++......
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            99999998886432    23446667643  33332                    479999999999999998874221


Q ss_pred             Cc--eEEEeeCCCceEEEeecC-----CCCcEEEEeeCCcceE---E--eecc----------------ccceeEEEECC
Q 020784          217 KG--LCAVSQGVGSLVLVCPGL-----QKGQVRVEHYASKRTK---F--IMAH----------------DSRIACFALTQ  268 (321)
Q Consensus       217 ~~--~~~~s~~~d~~~la~sGs-----~dg~V~i~d~~~~~~~---~--l~~H----------------~~~V~~vafsp  268 (321)
                      ..  -+.|.+++++.++.+...     .+++|.+|.+..+...   +  +...                ...+..|.+|+
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            11  234544666665544344     5667876544333211   1  1110                24578999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEcC---CCcEEEEEeCCC---------------cceeEEEeecCceEEEeec
Q 020784          269 DGQLLATSSTKGTLVRIFNTL---DGTLLQEECCPS---------------ISAQSGLWLSSAWLRVLRT  320 (321)
Q Consensus       269 dg~~las~S~Dgt~IrIWd~~---tg~~i~~~~~g~---------------~~~~~~~s~d~~~la~~~~  320 (321)
                      ||++|-.+.+....|++||+.   +.+++.++..|.               ....+.+++||++|.|+-.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            999887776644349999986   357888887762               2466799999999998754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.05  E-value=7.8e-07  Score=77.39  Aligned_cols=211  Identities=10%  Similarity=-0.017  Sum_probs=134.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+.+++++++|+++++... +++.+||.+ .+.. ..... +...+..+.+..++++.+...       .++.|..||.
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~~~   85 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTEN-------AANKIGRITK   85 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCC-------CCCeEEEECC
Confidence            57999999999998877664 668899877 4332 22210 234566777777776555443       2478999998


Q ss_pred             CCCcEEEEEee---CCceeEEEEeCC-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          164 HQSRCIGELSF---RSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       164 ~~~~~~~~~~~---~~~v~~v~~~~~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      . ++. ..+..   ...+..+.+.++ .++++.  ++.|..||. +++.. .+...........+..++++.+.++ ...
T Consensus        86 ~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-~~~  160 (299)
T 2z2n_A           86 K-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFT-ENQ  160 (299)
T ss_dssp             T-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEE-ETT
T ss_pred             C-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEE-eCC
Confidence            6 433 33332   236788888864 466665  359999998 55443 2322212223455566666666663 555


Q ss_pred             CCcEEEEeeCCcceEE--eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC---CcceeEEEeecC
Q 020784          238 KGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP---SISAQSGLWLSS  312 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~--l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g---~~~~~~~~s~d~  312 (321)
                      ++.|..++. ++....  +..+...+..++++++|.++++...++. |.+||. +++... +...   .....+.+..+|
T Consensus       161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEITE-FKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECSTT
T ss_pred             CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEEE-EECCCCCCCceeEEECCCC
Confidence            678888887 544443  3345567899999999998887776788 999999 777543 3222   222334555666


Q ss_pred             ce
Q 020784          313 AW  314 (321)
Q Consensus       313 ~~  314 (321)
                      +.
T Consensus       237 ~l  238 (299)
T 2z2n_A          237 DL  238 (299)
T ss_dssp             CE
T ss_pred             CE
Confidence            53

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.04  E-value=9.5e-08  Score=84.00  Aligned_cols=201  Identities=9%  Similarity=-0.015  Sum_probs=123.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee---cCCceEEEEEecCCCeEEEEe--CCC------CC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCNILALVG--GGP------DP  151 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~s--g~~------~~  151 (321)
                      +...+.+++|++||+++++... ++|.+||..+++........   ....+..+.+.++++++++-+  +..      ..
T Consensus        67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence            4457899999999998888765 67889998777643222110   012234567778887665532  100      00


Q ss_pred             CC--CCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe-EEEEE--CCEEEEEEcC-CcEE---EEEEeccCCCCceEEE
Q 020784          152 QY--PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL--EQKIFVYNFA-DLKL---LHQIETIANPKGLCAV  222 (321)
Q Consensus       152 ~~--~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~--~~~I~iwd~~-~~~~---~~~l~~~~~~~~~~~~  222 (321)
                      ..  ..+.|..+|.. ++..........+..++|+++. ++++.  ++.|.+|++. ++++   .+.+..+..  ....+
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~--~p~~i  223 (296)
T 3e5z_A          147 EMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG--KTDGL  223 (296)
T ss_dssp             CCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS--CCCSE
T ss_pred             cccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC--CCCeE
Confidence            00  12355556555 5443333333467889998763 22443  3699999986 5554   334421111  12233


Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEE-CCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFAL-TQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vaf-spdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      ..++++.+.++ .  ++.|.+|+...+.+..+..+.. +++++| +|+++.|..++.+ . +--++..+.++
T Consensus       224 ~~d~~G~l~v~-~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~-l~~~~~~~~~~  289 (296)
T 3e5z_A          224 RVDAGGLIWAS-A--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-E-FWSIETNVRGL  289 (296)
T ss_dssp             EEBTTSCEEEE-E--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-E-EEEEECSCCBC
T ss_pred             EECCCCCEEEE-c--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-e-EEEEEcccccc
Confidence            44556677764 3  6789999987666677877877 999999 6899988888865 3 44556666554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.03  E-value=1.5e-07  Score=83.00  Aligned_cols=201  Identities=13%  Similarity=0.094  Sum_probs=122.8

Q ss_pred             CCeEEEEEcCC-CCEEEEEcCCcEEEEEecCCceeEE-eeee---cCCceEEEEEecCCCeEEEEeCCC--------CCC
Q 020784           86 PTLLHISFNQD-HGCFAAGTDHGFRIYNCDPFREIFR-RDFE---RGGGIGVVEMLFRCNILALVGGGP--------DPQ  152 (321)
Q Consensus        86 ~~V~~v~fs~d-g~~lasg~~~gv~vw~~~~~~~~~~-~~~~---~~~~v~~v~~~~~~~~~~~~sg~~--------~~~  152 (321)
                      ..+.+++++++ |+++++...+++.+||.+ ++.... ....   ....+..+.+.+++++.+...+..        ...
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence            46899999999 887777766788899987 543221 1110   012356777777777655443210        000


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeeCCceeEEEEe----CCe--EEEEE--CCEEEEEEcC-CcEEE--EEEeccC-CC-Cce
Q 020784          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR----RDR--IIVVL--EQKIFVYNFA-DLKLL--HQIETIA-NP-KGL  219 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~----~~~--~~~~~--~~~I~iwd~~-~~~~~--~~l~~~~-~~-~~~  219 (321)
                      ...+.|..||.. ++..........+..+.++    ++.  ++++.  ++.|.+||+. +++..  ..+.... .. ...
T Consensus       150 ~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T 1pjx_A          150 EKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             SSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCC
Confidence            001457777765 5554433333456778888    764  55554  3699999975 44421  1221111 11 223


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCCc-ceEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCC
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~t  290 (321)
                      ..+..++++.+.+. ...++.|.+|+..++ .+..+..+...+.+++|+++|+ ++++...++. |.+|++..
T Consensus       229 ~~i~~d~~G~l~v~-~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-l~~~~~~~  299 (314)
T 1pjx_A          229 DGMDFDEDNNLLVA-NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQR  299 (314)
T ss_dssp             EEEEEBTTCCEEEE-EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECSS
T ss_pred             CceEECCCCCEEEE-EcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe-EEEEeCCC
Confidence            44555666677663 445678888988744 3456666778899999999999 5555566677 88999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.01  E-value=4.5e-08  Score=97.01  Aligned_cols=225  Identities=9%  Similarity=0.080  Sum_probs=134.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-----cC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC-----
Q 020784           83 SPPPTLLHISFNQDHGCFAAG-----TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-----  151 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg-----~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~-----  151 (321)
                      .+...|..++|||||++||-+     ++ ..|+|||+++++.+.. .. +......+.|+ +++.++.+......     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            344578899999999999943     33 2478999999875432 22 11112456788 99988887743100     


Q ss_pred             -CCCCCcEEEEeCCCCcE--EEEEeeC----CceeEEEEeCCe--EEEEE-C----CEEEEEEcCCcE-EEEEEeccCCC
Q 020784          152 -QYPLNKVMIWDDHQSRC--IGELSFR----SEVRSVKLRRDR--IIVVL-E----QKIFVYNFADLK-LLHQIETIANP  216 (321)
Q Consensus       152 -~~~d~~v~iWD~~~~~~--~~~~~~~----~~v~~v~~~~~~--~~~~~-~----~~I~iwd~~~~~-~~~~l~~~~~~  216 (321)
                       .-....|++|++.++..  ...+...    ..+..+.++++.  +++.. .    +.|+++|+.+++ ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence             00235699999887642  2222222    235678888764  33332 1    489999997652 34455544332


Q ss_pred             CceEEEeeCCCceEEEeecCC---CCcEEEEeeCCcce---EEeeccccceeEEEECCCCCEEEEEeCCC---cEEEEEE
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFN  287 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~---dg~V~i~d~~~~~~---~~l~~H~~~V~~vafspdg~~las~S~Dg---t~IrIWd  287 (321)
                      .. ..++++++ .+++. ...   .+.|..+++.....   ..+..|...+.  .|++++.+|+....++   . |++||
T Consensus       283 ~~-~~~~~~g~-~l~~~-t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~~d  356 (693)
T 3iuj_A          283 DV-SLVDNKGS-TLYLL-TNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQFD  356 (693)
T ss_dssp             CE-EEEEEETT-EEEEE-ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEEEC
T ss_pred             eE-EEEeccCC-EEEEE-ECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEEEE
Confidence            22 22555543 34433 333   35677788876443   56777877765  8999998887766544   4 88999


Q ss_pred             cCCCcEEEEEeCCCcceeE--EEeecCceEEE
Q 020784          288 TLDGTLLQEECCPSISAQS--GLWLSSAWLRV  317 (321)
Q Consensus       288 ~~tg~~i~~~~~g~~~~~~--~~s~d~~~la~  317 (321)
                      +.. ...+.+.........  .+++++..|++
T Consensus       357 ~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          357 YEG-KRVREVALPGLGSVSGFNGKHDDPALYF  387 (693)
T ss_dssp             TTS-CEEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred             CCC-CeeEEeecCCCceEEeeecCCCCCEEEE
Confidence            874 445555433322222  33456666554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.01  E-value=3.4e-08  Score=98.04  Aligned_cols=201  Identities=9%  Similarity=0.000  Sum_probs=125.8

Q ss_pred             eEEEEEcCCCCEEEEEcC-Cc----------------EEEEEecCCcee--EEeeee-cCCceEEEEEecCCCeEEEEeC
Q 020784           88 LLHISFNQDHGCFAAGTD-HG----------------FRIYNCDPFREI--FRRDFE-RGGGIGVVEMLFRCNILALVGG  147 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~-~g----------------v~vw~~~~~~~~--~~~~~~-~~~~v~~v~~~~~~~~~~~~sg  147 (321)
                      +..++|+|||+.|+.++. .+                |.+|++.+....  ...+.. +...+..+.++++++.+++.+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            567999999999987765 33                778998876522  222210 1233567789999998888764


Q ss_pred             CCCCCCCCCcEEEEeCCC------Cc-EEEEEeeC-CceeE-EEEeCCeEEEEEC-----CEEEEEEcCCcE--EEEEEe
Q 020784          148 GPDPQYPLNKVMIWDDHQ------SR-CIGELSFR-SEVRS-VKLRRDRIIVVLE-----QKIFVYNFADLK--LLHQIE  211 (321)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~------~~-~~~~~~~~-~~v~~-v~~~~~~~~~~~~-----~~I~iwd~~~~~--~~~~l~  211 (321)
                      ...  ..+..|.+||+.+      +. ....+..+ ..+.. +.-..+.+++.++     ..|.+||+.+++  ..+.+.
T Consensus       253 ~~~--~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          253 EGC--DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             CSS--SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             ccC--CCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            211  0157899999986      42 23334332 22322 3334566766653     279999997763  234444


Q ss_pred             ccCCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeCCc-ceEEeeccccceeEEEECCCCCEEE-EEe---CCCcEEE
Q 020784          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASK-RTKFIMAHDSRIACFALTQDGQLLA-TSS---TKGTLVR  284 (321)
Q Consensus       212 ~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~~~-~~~~l~~H~~~V~~vafspdg~~la-s~S---~Dgt~Ir  284 (321)
                      .+.....+..+...+++.+++ +...+|..+|  |+...+ .+..+..|.+.|..++++|++..|+ +.+   ..++ |.
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~-~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~-i~  408 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVL-CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI-IY  408 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEE-EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE-EE
T ss_pred             CCCCCCeEEEEEEEcCCEEEE-EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCE-EE
Confidence            443322233333333445555 4777886555  666444 4567778888899999999987655 322   3567 99


Q ss_pred             EEEcCCCc
Q 020784          285 IFNTLDGT  292 (321)
Q Consensus       285 IWd~~tg~  292 (321)
                      +||+.+|+
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=1.4e-07  Score=85.20  Aligned_cols=228  Identities=7%  Similarity=-0.003  Sum_probs=134.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--Cc-EEEEEecCCceeEEee-----e-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTD--HG-FRIYNCDPFREIFRRD-----F-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~--~g-v~vw~~~~~~~~~~~~-----~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      .....|++++||+++++...  ++ ++||.++.++ +....     . .+-..+..+.+..++++.++-.+..  ...++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~--~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ--SKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH--HTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC--cCCCC
Confidence            47889999999999988642  23 5688776443 22110     0 0123566777777765444432200  00136


Q ss_pred             cEEEEeCCCCcEEEEEeeCC-------ceeEEEEeC--CeEEEEE-----CCEEEEEEcCCcEEEEEEeccCC--C----
Q 020784          157 KVMIWDDHQSRCIGELSFRS-------EVRSVKLRR--DRIIVVL-----EQKIFVYNFADLKLLHQIETIAN--P----  216 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~-------~v~~v~~~~--~~~~~~~-----~~~I~iwd~~~~~~~~~l~~~~~--~----  216 (321)
                      +|.+||.++++.+..+.+..       .+..+.+.+  ..++++.     ++.|.+||+.+++..+.+..|..  +    
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            89999999998877776532       357788884  3555653     35999999988877666543210  0    


Q ss_pred             ---------------------CceEEEeeCCCceEEEeecCCCCcEEEEeeC---Ccc-----e---EEeeccccceeEE
Q 020784          217 ---------------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA---SKR-----T---KFIMAHDSRIACF  264 (321)
Q Consensus       217 ---------------------~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~---~~~-----~---~~l~~H~~~V~~v  264 (321)
                                           .....+..++|+..|.++....+.+...+..   ...     +   ....++......+
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                                 1223344445555444322322333333321   100     0   0222455677889


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC--CCcceeEEEeecCceEEE
Q 020784          265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC--PSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       265 afspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~--g~~~~~~~~s~d~~~la~  317 (321)
                      +++++|.++++...++. |.+||..+|+.......  ......+++..+++++.+
T Consensus       254 a~d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSA-IGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             EECTTCCEEEEEGGGTE-EEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEEEEccCCCe-EEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence            99999999999988888 99999867875333322  122344566667765443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.99  E-value=6.1e-07  Score=82.27  Aligned_cols=202  Identities=12%  Similarity=0.005  Sum_probs=120.6

Q ss_pred             EEEEEcCCCCEEEEEcC---CcEEEEEecCCceeEE-eeeecCCceEEEEEecCCC-eEEEEeCCCCCCCCCCcEEEEeC
Q 020784           89 LHISFNQDHGCFAAGTD---HGFRIYNCDPFREIFR-RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~---~gv~vw~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~-~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..++|+|||++|+++..   +.|.++| ++++.... ...  .+.   +.+.+.++ .++..+       .|+++.++|.
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~~---~~~~~~~~~~~~~~~-------~dg~~~~vd~  194 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PTC---YHIHPGAPSTFYLLC-------AQGGLAKTDH  194 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cce---EEEEeCCCceEEEEc-------CCCCEEEEEC
Confidence            47899999999998763   4588999 88876544 332  222   33334443 333333       4689999999


Q ss_pred             CCCcEEEEEe-----eC-Cce-eEEEEe--CCe-EEEEECCEEEEEEcCCc--EEEEEEeccC--------CCCc--eEE
Q 020784          164 HQSRCIGELS-----FR-SEV-RSVKLR--RDR-IIVVLEQKIFVYNFADL--KLLHQIETIA--------NPKG--LCA  221 (321)
Q Consensus       164 ~~~~~~~~~~-----~~-~~v-~~v~~~--~~~-~~~~~~~~I~iwd~~~~--~~~~~l~~~~--------~~~~--~~~  221 (321)
                       +++.+....     .. ..+ ....+.  ... +++...+.+.+.|+...  +.+..+....        .+.+  .++
T Consensus       195 -~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          195 -AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             -CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence             877663322     11 111 111122  123 33344568888898654  3333332111        1122  245


Q ss_pred             EeeCCCceEEEeecC-------CCCcEEEEeeCCcce-EEeeccccceeEEEECCCCC-EEEEEeC-CCcEEEEEEcCCC
Q 020784          222 VSQGVGSLVLVCPGL-------QKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQ-LLATSST-KGTLVRIFNTLDG  291 (321)
Q Consensus       222 ~s~~~d~~~la~sGs-------~dg~V~i~d~~~~~~-~~l~~H~~~V~~vafspdg~-~las~S~-Dgt~IrIWd~~tg  291 (321)
                      ++++++..+++....       ..+.|.+.|..+..+ .++. -.....+++|+|||+ +|.++.. +++ |.|||+.++
T Consensus       274 ~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~-V~ViD~~t~  351 (373)
T 2mad_H          274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAG  351 (373)
T ss_pred             ECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCe-EEEEECCCC
Confidence            555543333332110       235788899887664 4553 334689999999999 7888774 788 999999999


Q ss_pred             cEEEE-EeCCCcceeE
Q 020784          292 TLLQE-ECCPSISAQS  306 (321)
Q Consensus       292 ~~i~~-~~~g~~~~~~  306 (321)
                      +.+++ ...|.....+
T Consensus       352 ~vv~~i~~vG~~P~~~  367 (373)
T 2mad_H          352 DQDQSTVELGSGPQVL  367 (373)
T ss_pred             CEEeeecCCCCCCcEE
Confidence            99988 4566655443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.99  E-value=3.8e-08  Score=91.70  Aligned_cols=221  Identities=13%  Similarity=0.020  Sum_probs=139.3

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEecCCceeEEeeee------cCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        90 ~v~fs~dg~~lasg~-----------~~gv~vw~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      .+.|+|||++|.++.           ++.|.++|..+.+.+......      ....-..+.++++++.+.++...    
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----  197 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----  197 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----
Confidence            799999999887664           245789999998876655430      00112345778899988887632    


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe-EEEEECCEEEEEEcCCcEEEEE----EeccCCCCc-eEEEeeCC
Q 020784          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQ----IETIANPKG-LCAVSQGV  226 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~I~iwd~~~~~~~~~----l~~~~~~~~-~~~~s~~~  226 (321)
                       .++.|.+.|..+++.+.++.....+.-....... +..+.++++.+.+..+++....    +.....+.. ...+.+++
T Consensus       198 -~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          198 -PAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             -CCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence             2478999999999999888765432111112222 2333456777778765554432    221122211 23445554


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcceEEeec-------------cccceeEEEECCCCCEEEEEeC----------CCcEE
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSST----------KGTLV  283 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~~~l~~-------------H~~~V~~vafspdg~~las~S~----------Dgt~I  283 (321)
                      ...+++   ...|.|.+.|........+..             .......++|+|+|.++.....          +++ |
T Consensus       277 ~~~~~~---s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-V  352 (426)
T 3c75_H          277 GRLVWP---TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-V  352 (426)
T ss_dssp             CEEEEE---BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-E
T ss_pred             CEEEEE---eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-E
Confidence            333332   346788888876544332211             1122334799999875554421          346 9


Q ss_pred             EEEEcCCCcEEEEEeCCCcceeEEEeecCc-eEEEee
Q 020784          284 RIFNTLDGTLLQEECCPSISAQSGLWLSSA-WLRVLR  319 (321)
Q Consensus       284 rIWd~~tg~~i~~~~~g~~~~~~~~s~d~~-~la~~~  319 (321)
                      -|+|+.+++.++++..+.....+.+++||+ +|.++.
T Consensus       353 sVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          353 VVLNAETGERINKIELGHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             EEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             EEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc
Confidence            999999999999998888788889999999 676654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.95  E-value=2.8e-07  Score=84.56  Aligned_cols=209  Identities=11%  Similarity=-0.021  Sum_probs=129.3

Q ss_pred             EEEEEcCCCCEEEEEc---CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           89 LHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~---~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ..++|+|||++|.++.   .+.|.|+|+.+.+.+.....  .+ ...+ .......++..+       .||++.+.+..+
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g-~~~~-~P~g~~~~~~~~-------~DG~~~~v~~~~  208 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PD-CYHI-FPTAPDTFFMHC-------RDGSLAKVAFGT  208 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CS-EEEE-EEEETTEEEEEE-------TTSCEEEEECCS
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--CC-ccee-ecCCCceeEEEC-------CCCCEEEEECCC
Confidence            3589999999888765   25588999999988766653  22 1111 112233444444       468888888875


Q ss_pred             -CcEEEEEe-e---C-Ccee-EEEEe-CC-eE-EEEECCEEEEEEcCCc--EEEEEEec----------cCCCCceEEEe
Q 020784          166 -SRCIGELS-F---R-SEVR-SVKLR-RD-RI-IVVLEQKIFVYNFADL--KLLHQIET----------IANPKGLCAVS  223 (321)
Q Consensus       166 -~~~~~~~~-~---~-~~v~-~v~~~-~~-~~-~~~~~~~I~iwd~~~~--~~~~~l~~----------~~~~~~~~~~s  223 (321)
                       ++...... .   . ..+. ...|. ++ ++ ++..+++|.+.|+.+.  +.+.++..          .......++++
T Consensus       209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~  288 (386)
T 3sjl_D          209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH  288 (386)
T ss_dssp             SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred             CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence             55432211 1   0 1121 13443 23 33 4445579999999654  34444430          01123356676


Q ss_pred             eCCCceEEEeecC--------CCCcEEEEeeCCcceE-EeeccccceeEEEECCCCC-EEEE-EeCCCcEEEEEEcCCCc
Q 020784          224 QGVGSLVLVCPGL--------QKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQ-LLAT-SSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       224 ~~~d~~~la~sGs--------~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~-~las-~S~Dgt~IrIWd~~tg~  292 (321)
                      ++.+..+++. ..        ..+.|.+.|..++++. .+.- ...+..|+|++||+ +|.+ ...+++ |.|+|..+++
T Consensus       289 ~~~~~lyV~~-~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~-VsViD~~t~k  365 (386)
T 3sjl_D          289 RALDRIYLLV-DQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESGE  365 (386)
T ss_dssp             TTTTEEEEEE-EECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTE-EEEEETTTCC
T ss_pred             CCCCeEEEEe-ccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCe-EEEEECCCCc
Confidence            6554444432 21        1246888888876643 3332 23689999999996 5555 455888 9999999999


Q ss_pred             EEEEEeCCCcceeEEEeec
Q 020784          293 LLQEECCPSISAQSGLWLS  311 (321)
Q Consensus       293 ~i~~~~~g~~~~~~~~s~d  311 (321)
                      .++++..+.....+.++.|
T Consensus       366 ~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          366 ELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEECCCCSSCCEEEECC
T ss_pred             EEEEecCCCCCceeEECCc
Confidence            9999998888888888776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.94  E-value=6.9e-06  Score=71.29  Aligned_cols=211  Identities=8%  Similarity=-0.023  Sum_probs=131.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+.+++++++|+++++... +++..|+.+ ++ ....... .......+.+.+++++.+...       .++.|.+||.
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~d~  127 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEM-------NGNRIGRITD  127 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEec-------CCceEEEECC
Confidence            57899999999998887764 557788865 22 2222210 133566667776666555443       2478999998


Q ss_pred             CCCcEEEEEee---CCceeEEEEeCC-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          164 HQSRCIGELSF---RSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       164 ~~~~~~~~~~~---~~~v~~v~~~~~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                       +++... +..   ...+..+.+.++ .+.++.  .+.|..||. +++... +...........+..++++.+.+. ...
T Consensus       128 -~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~-~~~  202 (299)
T 2z2n_A          128 -DGKIRE-YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFV-EII  202 (299)
T ss_dssp             -TCCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred             -CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEE-ccC
Confidence             555432 222   235788888865 466655  369999998 665543 322222223445566666666653 455


Q ss_pred             CCcEEEEeeCCcceEE--eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC---CcceeEEEeecC
Q 020784          238 KGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP---SISAQSGLWLSS  312 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~--l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g---~~~~~~~~s~d~  312 (321)
                      ++.|.+++. ++....  +..+...+.+|+++++|+++++...++. |.+||. +++ +..+...   .....+.+ .++
T Consensus       203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g  277 (299)
T 2z2n_A          203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGE  277 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CSS
T ss_pred             CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cCC
Confidence            678888887 444433  3345678999999999998887766788 999998 565 3444321   22233455 566


Q ss_pred             ceE
Q 020784          313 AWL  315 (321)
Q Consensus       313 ~~l  315 (321)
                      +..
T Consensus       278 ~l~  280 (299)
T 2z2n_A          278 TIW  280 (299)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=1.8e-06  Score=75.21  Aligned_cols=194  Identities=9%  Similarity=-0.038  Sum_probs=131.6

Q ss_pred             CeEEEEEcCCCCEEEEEcC---CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           87 TLLHISFNQDHGCFAAGTD---HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~---~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ....+.|++||.++++.+.   +.|+++|..+++.+.....  ........+..+++.+..+..      .++.+.++|.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~   93 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDR   93 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEET------TCSEEEEEET
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEEeCCEEEEEEe------cCCEEEEEEC
Confidence            4678999999876665542   5588999999988766654  221111123334566666664      4689999999


Q ss_pred             CCCcEEEEEeeC-CceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCC--CC-ceEEEeeCCCceEEEeecCCC
Q 020784          164 HQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN--PK-GLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       164 ~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~--~~-~~~~~s~~~d~~~la~sGs~d  238 (321)
                      .+++.+.++... ..-..++...+.++++. ++.|.++|..+.+.+.++.....  ++ ....+.+. ++.+.+. ...+
T Consensus        94 ~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn-~~~~  171 (266)
T 2iwa_A           94 RTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN-IWQT  171 (266)
T ss_dssp             TTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETTS
T ss_pred             CCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe-cCCC
Confidence            999999998776 55566777777777764 36999999999999988875432  21 11222222 3455553 4456


Q ss_pred             CcEEEEeeCCcce-EEeecc-------------ccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCC
Q 020784          239 GQVRVEHYASKRT-KFIMAH-------------DSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       239 g~V~i~d~~~~~~-~~l~~H-------------~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg  291 (321)
                      +.|.+.|..++.+ ..+.-.             ....+.|+|+|+++ +++|+...++ |.+.++...
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~~  238 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHLV  238 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEEC
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEecc
Confidence            7888888877664 344321             13568999999975 6777777777 888877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.87  E-value=4.9e-07  Score=90.13  Aligned_cols=220  Identities=9%  Similarity=-0.030  Sum_probs=129.0

Q ss_pred             cCCCCEEEEEcC-Cc---EEEEEecC-----CceeEEee---eecCC--ceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           94 NQDHGCFAAGTD-HG---FRIYNCDP-----FREIFRRD---FERGG--GIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        94 s~dg~~lasg~~-~g---v~vw~~~~-----~~~~~~~~---~~~~~--~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      +|||++++.... .+   -.||..+.     .+......   +..++  .+..+.|+++++.++.+.....  ....+|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G--~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG--SDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT--CSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC--CceEEEE
Confidence            389998885543 32   45787653     22221111   10122  5677889999999988763210  0125799


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC-eEEEEEC---------------CEEEEEEcCCcEE--EEEEeccCCCCceEE
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVLE---------------QKIFVYNFADLKL--LHQIETIANPKGLCA  221 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~---------------~~I~iwd~~~~~~--~~~l~~~~~~~~~~~  221 (321)
                      +||+.+++.+........+..+.|+++ .++.+..               ..|++|++.+++.  ...+.....+.....
T Consensus       193 v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          193 FVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             EEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             EEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            999999987654222222356788876 4444432               1499999976541  223333333333455


Q ss_pred             EeeCCCceEEEeecC----CCCcEEEEeeCCc--c-eEEeeccccceeEEEECCCCCEEEEEeC----CCcEEEEEEcCC
Q 020784          222 VSQGVGSLVLVCPGL----QKGQVRVEHYASK--R-TKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLD  290 (321)
Q Consensus       222 ~s~~~d~~~la~sGs----~dg~V~i~d~~~~--~-~~~l~~H~~~V~~vafspdg~~las~S~----Dgt~IrIWd~~t  290 (321)
                      +...+|+.+|++...    ....|.+||..++  . ...+..+...+.... +|+|..|+..+.    ++. |.+||+.+
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~  350 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSG  350 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCC
Confidence            566667777765332    2347888998765  5 667777766666664 489998888775    344 88999988


Q ss_pred             C-cEEEEEeCCCcceeEEEeecCceEEE
Q 020784          291 G-TLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       291 g-~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                      + ....++-.++......+++++.+|.+
T Consensus       351 ~~~~~~~l~~~~~~~l~~~~~~~~~lv~  378 (741)
T 1yr2_A          351 STPRFDTVVPESKDNLESVGIAGNRLFA  378 (741)
T ss_dssp             SSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred             CccccEEEecCCCCeEEEEEEECCEEEE
Confidence            6 24455544444333345555555433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.86  E-value=1.8e-05  Score=68.69  Aligned_cols=212  Identities=9%  Similarity=-0.012  Sum_probs=132.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+.+++++++|+++++... +++.+|+.+ ++.. ..... +...+..+.+..++++.+...       .++.|..||.
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~v~~~d~   90 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTEN-------GANKIGKLSK   90 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEec-------CCCeEEEECC
Confidence            47889999999998887754 668899877 4332 22221 124566677776676554433       2478999998


Q ss_pred             CCCcEEEEEeeC---CceeEEEEeCC-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          164 HQSRCIGELSFR---SEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       164 ~~~~~~~~~~~~---~~v~~v~~~~~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      . ++.. .+...   ..+..+.+.++ .++++.  ++.|..||.. ++.. .+...........+..++++.+.+. ...
T Consensus        91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~~  165 (300)
T 2qc5_A           91 K-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFT-ENQ  165 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred             C-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEE-ecC
Confidence            8 5543 33322   46788888754 466665  4689999987 5543 3322212233455666666666553 455


Q ss_pred             CCcEEEEeeCCcceEEe--eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC-C-CcceeEEEeecCc
Q 020784          238 KGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC-P-SISAQSGLWLSSA  313 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~l--~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~-g-~~~~~~~~s~d~~  313 (321)
                      ++.|..++. .+....+  ..+...+..++++++|.+.++....+. |.+||. +++....... + .....+.+..+|+
T Consensus       166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISEYDIPTPNARPHAITAGKNSE  242 (300)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence            677888877 4443333  244567999999999998887766777 999998 6665442211 1 2223345556665


Q ss_pred             e
Q 020784          314 W  314 (321)
Q Consensus       314 ~  314 (321)
                      .
T Consensus       243 l  243 (300)
T 2qc5_A          243 I  243 (300)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.84  E-value=2.1e-06  Score=75.93  Aligned_cols=214  Identities=10%  Similarity=-0.020  Sum_probs=127.0

Q ss_pred             CCeEEEEEcCCCC-EEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~-~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      .-.....|+++|+ ++.++.. +++..|+.+ ++.. .... +.+....+.+.++++++++..       .++.|.+||.
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~-~~~~-~~~~~~gl~~d~dG~l~v~~~-------~~~~v~~~~~  114 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD-VLLD-ATAFTNGNAVDAQQRLVHCEH-------GRRAITRSDA  114 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE-EEEE-SCSCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE-EEeC-CCCccceeeECCCCCEEEEEC-------CCCEEEEECC
Confidence            3567899999998 4556655 457788763 3322 2222 245677788888888555433       2368999998


Q ss_pred             CCCcEEEEEee-C----CceeEEEEeCCeEEEEE--------------------CCEEEEEEcCCcEEEEEEeccCCCCc
Q 020784          164 HQSRCIGELSF-R----SEVRSVKLRRDRIIVVL--------------------EQKIFVYNFADLKLLHQIETIANPKG  218 (321)
Q Consensus       164 ~~~~~~~~~~~-~----~~v~~v~~~~~~~~~~~--------------------~~~I~iwd~~~~~~~~~l~~~~~~~~  218 (321)
                      + ++....... .    ..+..+.+.++..+..+                    .+.|..||..+++..... .. ....
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-~~p~  191 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL-DHPN  191 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-SSEE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC-CCCc
Confidence            6 553322211 1    23566888876533332                    136777777555543322 21 1112


Q ss_pred             eEEEeeCCCceEEEeecCC-----CCcEEEEeeCCcceE---Ee-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          219 LCAVSQGVGSLVLVCPGLQ-----KGQVRVEHYASKRTK---FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~-----dg~V~i~d~~~~~~~---~l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      -+++  ++|+..|.++.+.     ++.|.+++.....+.   .+ ......+..++++++|++.++.  .+. |.+||. 
T Consensus       192 gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~~g-v~~~~~-  265 (305)
T 3dr2_A          192 GLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--GTG-VCVFDS-  265 (305)
T ss_dssp             EEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--SSE-EEEECT-
T ss_pred             ceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--CCc-EEEECC-
Confidence            2344  4455544433333     267888887643221   11 2234556789999999976654  345 899998 


Q ss_pred             CCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          290 DGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       290 tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      +|+.+..+........+.|..+++.|.++
T Consensus       266 ~g~~~~~~~~~~~~~~~~f~~d~~~L~it  294 (305)
T 3dr2_A          266 DGQLLGHIPTPGTASNCTFDQAQQRLFIT  294 (305)
T ss_dssp             TSCEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             CCCEEEEEECCCceeEEEEeCCCCEEEEE
Confidence            68888888765544556777788777664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.83  E-value=1.8e-05  Score=68.67  Aligned_cols=211  Identities=8%  Similarity=-0.028  Sum_probs=131.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+.+++++++|+++++... +.|..||.+ ++.. ..... .......+.+..++++.+...       .++.|..+|.
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~~~  132 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQL-------NGDRIGKLTA  132 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEET-------TTTEEEEECT
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEcc-------CCCeEEEECC
Confidence            47899999999998777764 557788876 4332 22211 124566677776676554433       2478999998


Q ss_pred             CCCcEEEEEeeC---CceeEEEEeCC-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          164 HQSRCIGELSFR---SEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       164 ~~~~~~~~~~~~---~~v~~v~~~~~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      . ++.. .+...   ..+..+.+.++ .++++.  ++.|..||. +++... +...........+..++++.+.++ ...
T Consensus       133 ~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~-~~~  207 (300)
T 2qc5_A          133 D-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFV-EIM  207 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred             C-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEE-ccC
Confidence            7 5544 23222   36788888764 466665  468999998 555433 332222223455566666666663 455


Q ss_pred             CCcEEEEeeCCcceEE--eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC---CcceeEEEeecC
Q 020784          238 KGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP---SISAQSGLWLSS  312 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~--l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g---~~~~~~~~s~d~  312 (321)
                      .+.|.+++.. +....  +..+...+.+|+++++|+++++...++. |.+||. +++.. .+...   .....+.+..+|
T Consensus       208 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g  283 (300)
T 2qc5_A          208 GNKIGRITTT-GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKDG  283 (300)
T ss_dssp             TTEEEEECTT-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTTS
T ss_pred             CCEEEEEcCC-CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCCC
Confidence            6678888873 33332  3345677999999999998887766788 999998 56543 34222   223344555666


Q ss_pred             ce
Q 020784          313 AW  314 (321)
Q Consensus       313 ~~  314 (321)
                      +.
T Consensus       284 ~l  285 (300)
T 2qc5_A          284 SV  285 (300)
T ss_dssp             CE
T ss_pred             CE
Confidence            54

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.77  E-value=1e-08  Score=93.93  Aligned_cols=187  Identities=10%  Similarity=-0.011  Sum_probs=96.2

Q ss_pred             CCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee
Q 020784           96 DHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (321)
Q Consensus        96 dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (321)
                      ++.++++|+.+ .+..||..+++.+.....   +.+....+..++..++..+       .|+.|+.||.++|+.+....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s-------~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDP-------NDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECT-------TTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeC-------CCCEEEEEECCCCceeeeeec
Confidence            46667777764 588999999998776653   3332222223333443323       579999999998887655543


Q ss_pred             CC--cee-EEEE-eCCeEEEE-ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc
Q 020784          175 RS--EVR-SVKL-RRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (321)
Q Consensus       175 ~~--~v~-~v~~-~~~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~  249 (321)
                      +.  .+. +..+ ..+.++++ .++.|+.||..+++.+.++..+..    ..+++  ++..++ .|+.||.|+.||..++
T Consensus        78 ~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~-~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           78 TIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLY-LGRTEYTITMYDTKTR  150 (369)
T ss_dssp             CHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EE-EEEEEEEEECCCSSSS
T ss_pred             cCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEE-EEecCCEEEEEECCCC
Confidence            31  111 1111 23334444 356899999999999888765431    22333  334444 3788899999998776


Q ss_pred             ceE-EeeccccceeEEEECCCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          250 RTK-FIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       250 ~~~-~l~~H~~~V~~vafspdg---~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      .+. .+..+.  ....+++.++   ..+..++.||. |+.||.++|+++-+++.+..
T Consensus       151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~~p  204 (369)
T 2hz6_A          151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNYASP  204 (369)
T ss_dssp             SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEECSSC
T ss_pred             CEEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecCCCc
Confidence            543 333221  2334455432   45666888999 99999999999888865443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.77  E-value=1.9e-05  Score=68.70  Aligned_cols=176  Identities=11%  Similarity=0.020  Sum_probs=123.9

Q ss_pred             EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC--ceeEEEEeCCeEEEEE--CCEEEEEEcCCcEE
Q 020784          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVL--EQKIFVYNFADLKL  206 (321)
Q Consensus       131 ~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~~~~~~~--~~~I~iwd~~~~~~  206 (321)
                      ..+.+.+++ .+..++|..    .++.|++.|..+++.+..+....  ....+.+..+.++++.  ++.+.++|..+++.
T Consensus        24 ~Gl~~~~dg-~Lyvstg~~----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           24 QGLVYAEND-TLFESTGLY----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEECSTT-EEEEEECST----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE
T ss_pred             ccEEEeCCC-eEEEECCCC----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE
Confidence            566776654 555554321    35789999999999999887654  3346778888898887  57999999999999


Q ss_pred             EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEee--ccc---cceeEEEECCCCCEEEEEeCCC
Q 020784          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM--AHD---SRIACFALTQDGQLLATSSTKG  280 (321)
Q Consensus       207 ~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~--~H~---~~V~~vafspdg~~las~S~Dg  280 (321)
                      +.++... .+.+ ..+++++. .+++ +. .+++|.+.|..+.. ...+.  .+.   ..++.+.|. +|.++|....++
T Consensus        99 ~~~i~~g-~~~g-~glt~Dg~-~l~v-s~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~  172 (266)
T 2iwa_A           99 IKNFTHQ-MKDG-WGLATDGK-ILYG-SD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD  172 (266)
T ss_dssp             EEEEECC-SSSC-CEEEECSS-SEEE-EC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEECC-CCCe-EEEEECCC-EEEE-EC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence            9999765 2333 45677653 3444 23 46799999987644 33333  121   246788888 787777776677


Q ss_pred             cEEEEEEcCCCcEEEEEeCCC--------------cceeEEEeecCceEEEe
Q 020784          281 TLVRIFNTLDGTLLQEECCPS--------------ISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       281 t~IrIWd~~tg~~i~~~~~g~--------------~~~~~~~s~d~~~la~~  318 (321)
                      . |.+.|..+|+++.++..+.              ....+++.++++.|-|+
T Consensus       173 ~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          173 C-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             E-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             e-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence            7 9999999999999997641              12456778888776553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.74  E-value=6e-07  Score=82.09  Aligned_cols=207  Identities=9%  Similarity=0.012  Sum_probs=121.7

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEecCCceeEEeeeec-------CCceEEEEEecCCCeEEEEeCCCCC
Q 020784           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFER-------GGGIGVVEMLFRCNILALVGGGPDP  151 (321)
Q Consensus        90 ~v~fs~dg~~lasg~-----------~~gv~vw~~~~~~~~~~~~~~~-------~~~v~~v~~~~~~~~~~~~sg~~~~  151 (321)
                      .+.|+|||++|.++.           ++.|.+||..+.+....... .       ...-..+.++++++.+.++..+   
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v-~~~~~~~~g~~P~~ia~SpDGk~lyVan~~---  144 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-PDAPRFSVGPRVHIIGNCASSACLLFFLFG---  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-TTSCSCCBSCCTTSEEECTTSSCEEEEECS---
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEccC---
Confidence            799999999888775           24588999999988766654 1       0123456788999988887632   


Q ss_pred             CCCCCcEEE--EeCCCCcEEEEEeeCCc-------------------eeEEEEeC-------------------------
Q 020784          152 QYPLNKVMI--WDDHQSRCIGELSFRSE-------------------VRSVKLRR-------------------------  185 (321)
Q Consensus       152 ~~~d~~v~i--WD~~~~~~~~~~~~~~~-------------------v~~v~~~~-------------------------  185 (321)
                        ..+.|.+  +|..+   +.++.....                   +..+....                         
T Consensus       145 --~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~  219 (368)
T 1mda_H          145 --SSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA  219 (368)
T ss_dssp             --SSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEE
T ss_pred             --CCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcccc
Confidence              1366888  88866   333322110                   11111110                         


Q ss_pred             ---CeEEEEECCEEEEEEcCCc--EEEEEEecc----------CCCCceEEEeeCCCceEEEeec-C-C-----CCcEEE
Q 020784          186 ---DRIIVVLEQKIFVYNFADL--KLLHQIETI----------ANPKGLCAVSQGVGSLVLVCPG-L-Q-----KGQVRV  243 (321)
Q Consensus       186 ---~~~~~~~~~~I~iwd~~~~--~~~~~l~~~----------~~~~~~~~~s~~~d~~~la~sG-s-~-----dg~V~i  243 (321)
                         ..++....+.|.+.|+...  +.+..+...          ......++++++++..+++. . . .     ++.+.+
T Consensus       220 ~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~-~~~~~~~~~~~~~~~V  298 (368)
T 1mda_H          220 NYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT-VEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE-EECSSCTTSCEEEEEE
T ss_pred             ccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe-ccccCcccccCCCEEE
Confidence               0011110134555555321  222222110          00112256776654444332 2 1 1     234558


Q ss_pred             EeeCCcc-eEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEEEcCCCcEEEEEeCCCcceeEEE
Q 020784          244 EHYASKR-TKFIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQEECCPSISAQSGL  308 (321)
Q Consensus       244 ~d~~~~~-~~~l~~H~~~V~~vafspdg~-~las~S-~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~  308 (321)
                      +|..+.+ +..+.... ....|+|+|||+ ++++.. .+++ |.|+|+.+++.++++..|...-.+.+
T Consensus       299 iD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~t~kvv~~I~vg~~P~~i~~  364 (368)
T 1mda_H          299 VTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             EESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             EECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe-EEEEECCCCcEEEEEECCCCCCEEEe
Confidence            9987765 34444333 689999999997 567776 5899 99999999999999987776555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.71  E-value=2e-06  Score=82.50  Aligned_cols=219  Identities=13%  Similarity=0.050  Sum_probs=139.8

Q ss_pred             CCCCEEEEEcC-C-cEEEEEecCCceeEEeeeecCCceEEEEE-e-cCCCeEEEEeCCCC-------C----CCCCCcEE
Q 020784           95 QDHGCFAAGTD-H-GFRIYNCDPFREIFRRDFERGGGIGVVEM-L-FRCNILALVGGGPD-------P----QYPLNKVM  159 (321)
Q Consensus        95 ~dg~~lasg~~-~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~-~-~~~~~~~~~sg~~~-------~----~~~d~~v~  159 (321)
                      +||++|..... + .|.+.|+++++.....+.........+.+ . +++.++.+.+....       .    .-.++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            48998877655 3 37899999998765334312344555555 4 78888876642110       0    01246899


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC---------------------------------------CEEEE
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE---------------------------------------QKIFV  198 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~---------------------------------------~~I~i  198 (321)
                      +.|.++.+.+.++........+.++++  .++++..                                       +.|.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            999999998888776545555555443  2333221                                       23777


Q ss_pred             EEcCC--cEE-EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc------------eE-Eeecccccee
Q 020784          199 YNFAD--LKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------TK-FIMAHDSRIA  262 (321)
Q Consensus       199 wd~~~--~~~-~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~------------~~-~l~~H~~~V~  262 (321)
                      .|..+  ++. +..+.....+. .+.+++  |+.++.+++..+.+|.++|+....            +. .+ .-....+
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~Ph-Gv~~sP--DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~  334 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPH-GCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPL  334 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCC-CEEECT--TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEE
T ss_pred             EeCcccCCceeEEEEecCCCce-EEEEcC--CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcc
Confidence            77766  434 45555443333 344444  567777778888999999987532            11 11 1234589


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcCC----------CcEEEEEeCCCcceeE------EEeecCceEEEe
Q 020784          263 CFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEECCPSISAQS------GLWLSSAWLRVL  318 (321)
Q Consensus       263 ~vafspdg~~las~S~Dgt~IrIWd~~t----------g~~i~~~~~g~~~~~~------~~s~d~~~la~~  318 (321)
                      .++|+|+|...++.-.|+. |-+||+.+          .+.+.++..+-..-..      .+++||+||.++
T Consensus       335 h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             EEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             eEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            9999999954555666777 99999988          6788888875443222      446999999775

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.68  E-value=1.6e-05  Score=71.09  Aligned_cols=188  Identities=11%  Similarity=0.000  Sum_probs=110.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeec---CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ...|.+++|++||+++++. .+++.+||.++++.........   ...+..+.+.+++++.+...+... ....+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA-ETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC-CTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC-CCCceEEEEE
Confidence            3579999999999977765 6778899987776432222100   123566777788875544332100 0012345555


Q ss_pred             eCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE--CCEEEEEEcC--Cc-EEE--EEEecc-CCCCceEEEeeCCCceEE
Q 020784          162 DDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFA--DL-KLL--HQIETI-ANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~--~~-~~~--~~l~~~-~~~~~~~~~s~~~d~~~l  231 (321)
                      |  +++.............++|+++.  ++++.  .+.|.+|++.  ++ ++.  +.+... ......-.+..+.++.+.
T Consensus       167 ~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw  244 (326)
T 2ghs_A          167 A--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  244 (326)
T ss_dssp             E--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             e--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence            5  45443322222346678888763  55654  3699999985  55 311  122111 111223345566666666


Q ss_pred             EeecCCCCcEEEEeeCCcceEEeeccccceeEEEEC-CCCCEEEEEe
Q 020784          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDGQLLATSS  277 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafs-pdg~~las~S  277 (321)
                      ++ ...++.|..|+...+.+..+..+...+++++|+ +++..|..++
T Consensus       245 va-~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          245 NA-RWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EE-EETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EE-EeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            53 334567888887555556777777789999998 8887654443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=6.5e-06  Score=71.20  Aligned_cols=148  Identities=7%  Similarity=-0.044  Sum_probs=107.2

Q ss_pred             CCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeE--EEEeCCeEEEEE--CCEEEEEEcCCcEEEEEEecc
Q 020784          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETI  213 (321)
Q Consensus       138 ~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~~~~~~~~~~--~~~I~iwd~~~~~~~~~l~~~  213 (321)
                      +++.+..++|.      ++.|+++|+++++.+..+ .......  +.+..+++++++  ++.+.+||..+++.+.++...
T Consensus        63 ~~~~Ly~stG~------~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           63 HQGHFFESTGH------QGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             ETTEEEEEETT------TTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred             ECCEEEEEcCC------CCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence            35566666653      577999999999988888 7766544  788888998887  679999999999999999875


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEee--cccc---ceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM--AHDS---RIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~--~H~~---~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      ...   ..+++++ +.+++ + +.+++|.++|..+.. +..+.  .+..   .++.+.|. +|+++|....++. |.+.|
T Consensus       136 ~eG---wGLt~Dg-~~L~v-S-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~-I~vID  207 (268)
T 3nok_A          136 GEG---WGLCYWN-GKLVR-S-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD-VLEID  207 (268)
T ss_dssp             SCC---CCEEEET-TEEEE-E-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE-EEEEC
T ss_pred             Cce---eEEecCC-CEEEE-E-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe-EEEEe
Confidence            333   2334544 24444 3 347789999877654 33332  2322   35677777 8888877766777 99999


Q ss_pred             cCCCcEEEEEeCC
Q 020784          288 TLDGTLLQEECCP  300 (321)
Q Consensus       288 ~~tg~~i~~~~~g  300 (321)
                      .++|+++.++..+
T Consensus       208 p~TG~V~~~Idl~  220 (268)
T 3nok_A          208 PATGTVVGVIDAS  220 (268)
T ss_dssp             TTTCBEEEEEECH
T ss_pred             CCCCcEEEEEECC
Confidence            9999999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.67  E-value=2.7e-05  Score=67.21  Aligned_cols=156  Identities=10%  Similarity=0.092  Sum_probs=109.1

Q ss_pred             EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeE--EEEeCCeEEEEE--CCEEEEEEcCCcEE
Q 020784          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKL  206 (321)
Q Consensus       131 ~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~~~~~~~~~~--~~~I~iwd~~~~~~  206 (321)
                      ..+.+. + ..+..++|..    ....|+++|+++++.+..+.....+..  +.+..+++++++  ++.+.+||..+++.
T Consensus        46 qGL~~~-~-~~LyestG~~----g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           46 EGFFYR-N-GYFYESTGLN----GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEE-T-TEEEEEEEET----TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred             ceEEEE-C-CEEEEECCCC----CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence            445555 3 3454444321    124899999999999999888776544  778888998887  67999999999999


Q ss_pred             EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeec--cc---cceeEEEECCCCCEEEEEeCCC
Q 020784          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--HD---SRIACFALTQDGQLLATSSTKG  280 (321)
Q Consensus       207 ~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~--H~---~~V~~vafspdg~~las~S~Dg  280 (321)
                      +.++......   ..+++++ +.++++  +.+++|.+.|..+.. +..+.-  ..   ..++.+.|. +|+++|..-.++
T Consensus       120 ~~ti~~~~eG---~glt~dg-~~L~~S--dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~  192 (262)
T 3nol_A          120 VRSFNYDGEG---WGLTHND-QYLIMS--DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN  192 (262)
T ss_dssp             EEEEECSSCC---CCEEECS-SCEEEC--CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEECCCCc---eEEecCC-CEEEEE--CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC
Confidence            9999875432   3344554 234442  335789989877644 333322  22   335567776 788887776677


Q ss_pred             cEEEEEEcCCCcEEEEEeCC
Q 020784          281 TLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       281 t~IrIWd~~tg~~i~~~~~g  300 (321)
                      . |.+.|.++|+++.++..+
T Consensus       193 ~-I~vIDp~tG~V~~~Id~~  211 (262)
T 3nol_A          193 K-IVRIDPETGKVTGIIDLN  211 (262)
T ss_dssp             E-EEEECTTTCBEEEEEECT
T ss_pred             e-EEEEECCCCcEEEEEECC
Confidence            7 999999999999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.65  E-value=1.1e-05  Score=69.58  Aligned_cols=183  Identities=8%  Similarity=0.018  Sum_probs=122.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC---cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDH---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~---gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ...-...+.|+ ++.++.+.+..   .++++|.++++.+....+  ........+...++.+..+..      .++.+.+
T Consensus        41 ~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw------~~~~v~v  111 (262)
T 3nol_A           41 TKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTW------KNGLGFV  111 (262)
T ss_dssp             TTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEES------SSSEEEE
T ss_pred             CCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEe------eCCEEEE
Confidence            33456889999 67666665553   488999999998777665  333322223334566666664      4689999


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCC--CCc-eEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN--PKG-LCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~--~~~-~~~~s~~~d~~~la~sGs  236 (321)
                      +|.++.+.+.++.....-..++...+.++++. +++|.++|..+++.+.++....+  ++. ...+.+. ++.+.|. .-
T Consensus       112 ~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan-~w  189 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN-VW  189 (262)
T ss_dssp             EETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ET
T ss_pred             EECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE-Ec
Confidence            99999999999998776677888777777764 46899999999999998876432  221 1112222 3466553 44


Q ss_pred             CCCcEEEEeeCCcceE-Eeecc------------ccceeEEEECCCCCEEEEEe
Q 020784          237 QKGQVRVEHYASKRTK-FIMAH------------DSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~-~l~~H------------~~~V~~vafspdg~~las~S  277 (321)
                      .+..|.+.|..++.+. .+...            ....+.|||+|+++.|...+
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            5667888888776643 33221            13568999999876554444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.62  E-value=1.5e-05  Score=73.80  Aligned_cols=187  Identities=8%  Similarity=-0.078  Sum_probs=117.9

Q ss_pred             EEEcCCCCEEEEEcC-C--cEEEEEecCCceeEEe-ee-e-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           91 ISFNQDHGCFAAGTD-H--GFRIYNCDPFREIFRR-DF-E-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        91 v~fs~dg~~lasg~~-~--gv~vw~~~~~~~~~~~-~~-~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ++|+++|++|+++.. .  .+.+|+.......... .. . .......+++.++...+.++.       .++.|..||..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d-------~~~~I~~~d~~  248 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVD-------SNKNFGRFNVK  248 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEEC-------TTCEEEEEETT
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEE-------CCCcEEEEECC
Confidence            899999998887766 3  4556666544332222 00 0 123445667777445555544       35789999998


Q ss_pred             CCcEEEE----EeeCC--cee-EEEEeC--CeEEEEEC--CEEEEEEcCCcEEEEEEeccCC-------------CCceE
Q 020784          165 QSRCIGE----LSFRS--EVR-SVKLRR--DRIIVVLE--QKIFVYNFADLKLLHQIETIAN-------------PKGLC  220 (321)
Q Consensus       165 ~~~~~~~----~~~~~--~v~-~v~~~~--~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~-------------~~~~~  220 (321)
                      ++.....    .....  .+. .++|++  ..++++..  +.|+.|+....  +..+.+...             -....
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence            7764322    11111  234 899997  35666643  58999987643  334433210             01234


Q ss_pred             EEeeCCCceEEEeecC-CCCcEEEEeeCCcceEEeecc---------------ccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          221 AVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFIMAH---------------DSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs-~dg~V~i~d~~~~~~~~l~~H---------------~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                      .+..++++.+++ +.. .++.|+.++...+.+.++.++               -..+..|+++++|.++++-..++. ||
T Consensus       327 gia~d~dG~lyv-ad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~-Ir  404 (409)
T 3hrp_A          327 GMTVDEDGNFYI-VDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA-IR  404 (409)
T ss_dssp             EEEECTTCCEEE-EETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE-EE
T ss_pred             EEEEeCCCCEEE-EeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe-EE
Confidence            455566666665 366 778999999767777777665               246899999999998888887777 88


Q ss_pred             EEEc
Q 020784          285 IFNT  288 (321)
Q Consensus       285 IWd~  288 (321)
                      .+++
T Consensus       405 ~i~~  408 (409)
T 3hrp_A          405 KYAV  408 (409)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.61  E-value=2.3e-05  Score=68.93  Aligned_cols=193  Identities=6%  Similarity=0.008  Sum_probs=112.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeec---CCceEEEEEecCCCeEEEEeCCCCC--CCCCCcEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDP--QYPLNKVM  159 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~~sg~~~~--~~~d~~v~  159 (321)
                      ...+.+++|++||+++++ ..+++.+||.++++.........   ......+.+.+++++.+...+....  ......-+
T Consensus        53 ~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CCceEEEEECCCCCEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence            357999999999996555 47789999988776533222100   1235667778888865543321100  00123345


Q ss_pred             EEeCCC-CcEEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEc--CCcEEE--EEEecc-CCCCceEEEeeCCCce
Q 020784          160 IWDDHQ-SRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNF--ADLKLL--HQIETI-ANPKGLCAVSQGVGSL  229 (321)
Q Consensus       160 iWD~~~-~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~--~~~~~~--~~l~~~-~~~~~~~~~s~~~d~~  229 (321)
                      ||.+.. ++.......-.....++|+++  .++++.  .+.|.+|++  .++.+.  +.+... ......-.+..+.++.
T Consensus       132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            555442 343333333345678899875  355554  368999987  455432  222111 1111233445556666


Q ss_pred             EEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEEC-CCCCEE-EEEeCC
Q 020784          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALT-QDGQLL-ATSSTK  279 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafs-pdg~~l-as~S~D  279 (321)
                      +.++ ...++.|..|+..++. +..+..+...+++++|. |+++.| +|...+
T Consensus       212 lwva-~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          212 LWVA-CYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEE-EETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEE-EcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            6653 4556778889987544 56777777889999998 887654 444433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.60  E-value=0.00018  Score=61.90  Aligned_cols=216  Identities=7%  Similarity=-0.116  Sum_probs=126.1

Q ss_pred             CeEEEEEcCCCCEEEEEc-C-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~-~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ....++|++++..|..+. . +.|.+++.+.......... .......+++.+.+..+.++..+      .+.|.++|.+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~lyv~d~~------~~~I~~~~~~  109 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQ------LDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETT------TTEEEEEETT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCeEEEEECC------CCEEEEEEcC
Confidence            467899999766555444 3 4577888765543222211 11345667777766666665532      4789999986


Q ss_pred             CCcEEEEEeeC-CceeEEEEeC--CeEEEEEC----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          165 QSRCIGELSFR-SEVRSVKLRR--DRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~--~~~~~~~~----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      .......+... ..+..+++++  ..++++..    +.|..+++... ....+... .......+..++++..|.++...
T Consensus       110 g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQD-NLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECT-TCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEEC-CCCCCcEEEEcCCCCEEEEEECC
Confidence            54322222222 3577888986  45666642    47888887532 22333211 11122333344433323223566


Q ss_pred             CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC--cceeEEEeecCc
Q 020784          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS--ISAQSGLWLSSA  313 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~--~~~~~~~s~d~~  313 (321)
                      .+.|.+++........+.........|++. ++.++++....+. |.++|..+|+.+.++..+.  ....+.+.+++.
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe-EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            678888887654433332223445677775 4555555545566 9999999999999997665  355677777764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=1.5e-05  Score=68.98  Aligned_cols=183  Identities=9%  Similarity=0.060  Sum_probs=122.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      +....-...+.|+. +.++.+.+. +.++++|.++++.+... +  ........+...++.+..+..      .++.+.+
T Consensus        51 hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~g~~Ly~ltw------~~~~v~V  120 (268)
T 3nok_A           51 HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEGLASDGERLYQLTW------TEGLLFT  120 (268)
T ss_dssp             CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEEEEECSSCEEEEES------SSCEEEE
T ss_pred             CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeEEEEeCCEEEEEEc------cCCEEEE
Confidence            33444567889984 555555555 45889999999887766 5  333222223345566666653      4689999


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCc---eEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG---LCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~---~~~~s~~~d~~~la~sGs  236 (321)
                      +|.++++.+.++.....-..++...+.++++. +++|.++|..+++.+.++.....+..   ...+.+. ++.+.|. ..
T Consensus       121 ~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan-vw  198 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN-IW  198 (268)
T ss_dssp             EETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ET
T ss_pred             EECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE-EC
Confidence            99999999999998777778888888887775 46999999999999998876433221   1222222 4455552 44


Q ss_pred             CCCcEEEEeeCCcceE-Eeecc-------------ccceeEEEECCCC-CEEEEE
Q 020784          237 QKGQVRVEHYASKRTK-FIMAH-------------DSRIACFALTQDG-QLLATS  276 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~-~l~~H-------------~~~V~~vafspdg-~~las~  276 (321)
                      .+..|.+.|..++.+. .+...             .+..+.|||+|++ ++|+||
T Consensus       199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            5667888887776643 33211             1356899999975 566665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.58  E-value=4.3e-06  Score=76.39  Aligned_cols=202  Identities=8%  Similarity=-0.092  Sum_probs=122.1

Q ss_pred             cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC---CCCCCcEEEEeCCCCcEEEEEeeC--------
Q 020784          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIWDDHQSRCIGELSFR--------  175 (321)
Q Consensus       107 gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~---~~~d~~v~iWD~~~~~~~~~~~~~--------  175 (321)
                      .|.++|.++++.+...... ..+  .+.+++++..+.++......   .-.+++|.+||..+++.+.++...        
T Consensus        47 ~vsvID~~t~~v~~~i~vG-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGA-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEEC-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCC-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            6679999999887776651 234  68899999988887521000   002588999999999999998765        


Q ss_pred             CceeEEEEeCC--eEEEEE---CCEEEE--EEcCCcEEEEEEeccCCC----------------CceEEEeeC-------
Q 020784          176 SEVRSVKLRRD--RIIVVL---EQKIFV--YNFADLKLLHQIETIANP----------------KGLCAVSQG-------  225 (321)
Q Consensus       176 ~~v~~v~~~~~--~~~~~~---~~~I~i--wd~~~~~~~~~l~~~~~~----------------~~~~~~s~~-------  225 (321)
                      ..+..+.++++  .++++.   ++.|.+  +|..+   ++++......                .....+...       
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~  200 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence            34667888875  466664   357888  88866   3444321100                000001000       


Q ss_pred             --------------------CCceEEEeecCCCCcEEEEeeCCcceEE---ee-------cc---ccceeEEEECCCCCE
Q 020784          226 --------------------VGSLVLVCPGLQKGQVRVEHYASKRTKF---IM-------AH---DSRIACFALTQDGQL  272 (321)
Q Consensus       226 --------------------~d~~~la~sGs~dg~V~i~d~~~~~~~~---l~-------~H---~~~V~~vafspdg~~  272 (321)
                                          .++.++.+  +. |.|.+.|........   +.       .+   ......++|+|||++
T Consensus       201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~v--s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~  277 (368)
T 1mda_H          201 IVGAQCTGAQNCSSQAAQANYPGMLVWA--VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEEC--BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eEEEEeeeeeeCCCCccccccCCEEEEE--cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence                                01111111  12 455555543221111   10       01   111223789999887


Q ss_pred             EEEEeC---------CCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          273 LATSST---------KGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       273 las~S~---------Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      |..+..         ++. +.|+|+.+++.++++..+.....+.+++||++|.++
T Consensus       278 lyV~~~~~~~~~~~~~~~-~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          278 IMILTVEHSRSCLAAAEN-TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             EEEEEEECSSCTTSCEEE-EEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred             EEEEeccccCcccccCCC-EEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEE
Confidence            665432         234 569999999999999888777788999999876554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.55  E-value=0.00013  Score=62.28  Aligned_cols=157  Identities=15%  Similarity=0.105  Sum_probs=110.2

Q ss_pred             eEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCcee--EEEEeCCeEEEEE--CCEEEEEEcCCcE
Q 020784          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR--SVKLRRDRIIVVL--EQKIFVYNFADLK  205 (321)
Q Consensus       130 v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~--~v~~~~~~~~~~~--~~~I~iwd~~~~~  205 (321)
                      ...+++.  +..+..++|..    ....|+++|+++++.+..+.....+.  .+.+..+++++.+  ++.+.+||..+++
T Consensus        23 tqGL~~~--~~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           23 TEGLFYL--RGHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEEEEE--TTEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccEEEE--CCEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence            3445544  45566555432    23589999999999999988876654  4677788988887  6799999999999


Q ss_pred             EEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeec--cc---cceeEEEECCCCCEEEEEeCC
Q 020784          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--HD---SRIACFALTQDGQLLATSSTK  279 (321)
Q Consensus       206 ~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~--H~---~~V~~vafspdg~~las~S~D  279 (321)
                      .+.++......   ..++.++ +.+++ | ..++.|.++|..+.. +..+.-  +.   ..++.+.+. +|+.+|..-.+
T Consensus        97 ~~~ti~~~~~G---wglt~dg-~~L~v-S-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPGEG---WALTSDD-SHLYM-S-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSSCC---CEEEECS-SCEEE-E-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCCCc---eEEeeCC-CEEEE-E-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence            99999875433   3445554 34444 2 346789999877644 333322  22   245666765 78888777667


Q ss_pred             CcEEEEEEcCCCcEEEEEeCC
Q 020784          280 GTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       280 gt~IrIWd~~tg~~i~~~~~g  300 (321)
                      +. |.+.|.++|+++.++..+
T Consensus       170 ~~-I~vIDp~tG~V~~~idl~  189 (243)
T 3mbr_X          170 SR-IARIDPASGKVVAWIDLQ  189 (243)
T ss_dssp             TE-EEEECTTTCBEEEEEECG
T ss_pred             Ce-EEEEECCCCCEEEEEECC
Confidence            77 999999999999998744

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.54  E-value=6.2e-06  Score=81.46  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=59.9

Q ss_pred             CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEeecC-ceE
Q 020784          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWLSS-AWL  315 (321)
Q Consensus       239 g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~d~-~~l  315 (321)
                      |.|..||..++++.--..+...+....+..+|.++..++.||. +++||+++|+++.++..+....  -+.+..+| +|+
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCc-EEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            6788899988776544445566677777778888888999999 9999999999999998766433  34556788 466


Q ss_pred             EEe
Q 020784          316 RVL  318 (321)
Q Consensus       316 a~~  318 (321)
                      +++
T Consensus       536 ~~~  538 (677)
T 1kb0_A          536 SVA  538 (677)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.51  E-value=8.9e-05  Score=63.37  Aligned_cols=182  Identities=10%  Similarity=0.025  Sum_probs=120.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC---cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDH---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~---gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ...-...+.|+. +.++.+.+..   .++++|+++++.+....+  ........+...++.+..+..      .++.+.+
T Consensus        19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw------~~~~v~v   89 (243)
T 3mbr_X           19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVAWRDRLIQLTW------RNHEGFV   89 (243)
T ss_dssp             TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEES------SSSEEEE
T ss_pred             CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEEeCCEEEEEEe------eCCEEEE
Confidence            334577899987 5555555553   589999999998777665  232222223334566666653      4689999


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCC--C-ceEEEeeCCCceEEEeecC
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP--K-GLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~--~-~~~~~s~~~d~~~la~sGs  236 (321)
                      +|.++.+.+.++.....-..++...+.++++. +++|.++|..+.+.++++....++  + ....+.+. ++.+.|. .-
T Consensus        90 ~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan-vw  167 (243)
T 3mbr_X           90 YDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLAN-VW  167 (243)
T ss_dssp             EETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ET
T ss_pred             EECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEE-EC
Confidence            99999999999998877778888877777764 359999999999999988764322  1 11122222 3455553 33


Q ss_pred             CCCcEEEEeeCCcceE-Eeec-------------cccceeEEEECCCCC-EEEEE
Q 020784          237 QKGQVRVEHYASKRTK-FIMA-------------HDSRIACFALTQDGQ-LLATS  276 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~-~l~~-------------H~~~V~~vafspdg~-~las~  276 (321)
                      .+..|.+.|..++.+. .+..             -....+.||++|++. +|+||
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            4557777777776543 3321             123568999999765 55555

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.51  E-value=3e-05  Score=72.08  Aligned_cols=203  Identities=10%  Similarity=-0.025  Sum_probs=128.8

Q ss_pred             CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC---CCCCCcEEEEeCCCCcEEEEEeeC-------
Q 020784          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIWDDHQSRCIGELSFR-------  175 (321)
Q Consensus       106 ~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~---~~~d~~v~iWD~~~~~~~~~~~~~-------  175 (321)
                      +.|.++|..+.+.+..... ...+  .+.++++++.+.++......   .-.++.|.++|..+++.+.++...       
T Consensus        99 ~~VsVID~~t~~vv~~I~v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDG-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEE-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCCEEEEEEEC-CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence            3578999999988777765 1334  68899999988777520000   001468999999999999888764       


Q ss_pred             -CceeEEEEeCC--eEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc
Q 020784          176 -SEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (321)
Q Consensus       176 -~~v~~v~~~~~--~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~  249 (321)
                       .....+.++++  +++++.   ++.|.++|+.+++.+.++....    +..+.+.+...+++.  +.||.+.+.+....
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~--~~dG~~~~V~~~~~  249 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN--CRDGSLARVDFADG  249 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE--ETTSSEEEEECCTT
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE--cCCCCEEEEECCCC
Confidence             24566778764  577764   3689999999999999887532    234444444445543  45677776555443


Q ss_pred             ceE-----Eeeccccce-eEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEE--EEEeCC-----------CcceeEEEee
Q 020784          250 RTK-----FIMAHDSRI-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEECCP-----------SISAQSGLWL  310 (321)
Q Consensus       250 ~~~-----~l~~H~~~V-~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i--~~~~~g-----------~~~~~~~~s~  310 (321)
                      .+.     .+.....++ ..+.|.+++..++-.+..++ |.+.|+.+++..  .++...           .....+.+++
T Consensus       250 ~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~  328 (426)
T 3c75_H          250 ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR  328 (426)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred             cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence            332     111112221 24578999888777788888 999999776532  222211           0111257788


Q ss_pred             cCceEEEe
Q 020784          311 SSAWLRVL  318 (321)
Q Consensus       311 d~~~la~~  318 (321)
                      |++.|.|+
T Consensus       329 dg~rlyVa  336 (426)
T 3c75_H          329 QSDRIYLL  336 (426)
T ss_dssp             GGTEEEEE
T ss_pred             CCCEEEEE
Confidence            88766554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.47  E-value=0.00016  Score=65.36  Aligned_cols=189  Identities=10%  Similarity=0.045  Sum_probs=114.0

Q ss_pred             CCEEEEEcC-CcEEEEEecCCceeEEeeeec--------CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           97 HGCFAAGTD-HGFRIYNCDPFREIFRRDFER--------GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        97 g~~lasg~~-~gv~vw~~~~~~~~~~~~~~~--------~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      +..+.+++. +.+..||.++++.+.......        ...+.. ........+.+.+       .++.|..+|.++|+
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~-------~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGS-------EKAQVYALNTSDGT  124 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEE-------TTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEc-------CCCEEEEEECCCCC
Confidence            444555554 567899998888876665410        111211 2223345566655       46899999999999


Q ss_pred             EEEEEeeCCcee-EEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCC-----ceEEEeeCCCceEEEeecCCCCc
Q 020784          168 CIGELSFRSEVR-SVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQ  240 (321)
Q Consensus       168 ~~~~~~~~~~v~-~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~-----~~~~~s~~~d~~~la~sGs~dg~  240 (321)
                      .+........+. ......+.+++.+ ++.|..+|..+++.+..+.......     ....+.   ++.+++  |..+|.
T Consensus       125 ~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~--g~~~g~  199 (376)
T 3q7m_A          125 VAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVV--GGDNGR  199 (376)
T ss_dssp             EEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEE--CCTTTE
T ss_pred             EEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEE--EcCCCE
Confidence            887777654432 2334566677765 4689999999999888876543221     122222   234443  778888


Q ss_pred             EEEEeeCCcceE-Eeecccc-------ceeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          241 VRVEHYASKRTK-FIMAHDS-------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       241 V~i~d~~~~~~~-~l~~H~~-------~V~~vafsp--dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      |..+|..++... .......       .+..+.-.|  .+..+..++.++. |..+|.++|+.+.+...
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~  267 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKREL  267 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECC
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccC
Confidence            988888766543 3221110       000010111  2455666778999 99999999998877653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.47  E-value=5.9e-06  Score=81.78  Aligned_cols=81  Identities=14%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEeecC-ce
Q 020784          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWLSS-AW  314 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~d~-~~  314 (321)
                      +|.|..||..++++.--..+...+..-.+...|.++..|+.||. |+.||.+||+++.+++.+....  -+.+..+| +|
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~-l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGR-VIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCc-EEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            47788899988776533333344555566667888999999999 9999999999999997665533  35667888 67


Q ss_pred             EEEee
Q 020784          315 LRVLR  319 (321)
Q Consensus       315 la~~~  319 (321)
                      ++++.
T Consensus       533 v~~~~  537 (689)
T 1yiq_A          533 VTFMA  537 (689)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.46  E-value=2.3e-05  Score=77.56  Aligned_cols=196  Identities=13%  Similarity=0.050  Sum_probs=121.4

Q ss_pred             EEEEEcCCCCEEEEEcCC-c-------------EEEEEecCCce--eEEeeeec--CCceEEEEEecCCCeEEEEeCCCC
Q 020784           89 LHISFNQDHGCFAAGTDH-G-------------FRIYNCDPFRE--IFRRDFER--GGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~~-g-------------v~vw~~~~~~~--~~~~~~~~--~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      ..++|+ ||+.|+.++.+ .             |.+|++.+...  ....+...  ......+.++++++.+++......
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            467899 99988877653 1             67888876543  12222100  123556788999998877654321


Q ss_pred             CCCCCCcEEEEeCCCCc-EEEEEeeCC-ceeE-EEEeCCeEEEEEC-----CEEEEEEcCCcEE--EEEEeccCCCCceE
Q 020784          151 PQYPLNKVMIWDDHQSR-CIGELSFRS-EVRS-VKLRRDRIIVVLE-----QKIFVYNFADLKL--LHQIETIANPKGLC  220 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~-~~~~~~~~~-~v~~-v~~~~~~~~~~~~-----~~I~iwd~~~~~~--~~~l~~~~~~~~~~  220 (321)
                         ..+.|.+||+.++. ....+..+. .... +....+.+++.++     ..|..+|+.+++.  .+.+..+.... . 
T Consensus       257 ---~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-  331 (693)
T 3iuj_A          257 ---SGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV-L-  331 (693)
T ss_dssp             ---SCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-E-
T ss_pred             ---CCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE-E-
Confidence               34689999998763 233333322 2222 4444567776653     4799999977543  34555544333 3 


Q ss_pred             EEeeCCCceEEEeecCCCC--cEEEEeeCCcceEEee-ccccceeEEEECCCCCEEEEEeCC----CcEEEEEEcCCCcE
Q 020784          221 AVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTL  293 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg--~V~i~d~~~~~~~~l~-~H~~~V~~vafspdg~~las~S~D----gt~IrIWd~~tg~~  293 (321)
                      .+++++  ..|++....+|  .|++|++..+....+. .+.+.+..+.+++++..|+....+    ++ |..||+.+++.
T Consensus       332 ~~s~~g--~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~-l~~~d~~~g~~  408 (693)
T 3iuj_A          332 TVHSGS--GYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT-LYRFEPKSGAI  408 (693)
T ss_dssp             EEEEET--TEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE-EEEECTTTCCE
T ss_pred             EEEEEC--CEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE-EEEEECCCCeE
Confidence            777765  34444455666  5666887766555544 345678888889888766554434    77 99999988874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.44  E-value=5.1e-05  Score=66.87  Aligned_cols=190  Identities=9%  Similarity=-0.046  Sum_probs=109.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeec---CCceEEEEEecCCCeEEEEe--CCCC-------
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVG--GGPD-------  150 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~~s--g~~~-------  150 (321)
                      +...+..++|+++|+++++... .+|.+|+.+ ++.........   ...+..+.+.+++++.++-.  |...       
T Consensus        84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence            3457899999999998777655 568888875 43221111100   11234567777777555311  1000       


Q ss_pred             -CCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEEC-------CEEEEEEcCCcEEE--EEEeccCCCCc
Q 020784          151 -PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE-------QKIFVYNFADLKLL--HQIETIANPKG  218 (321)
Q Consensus       151 -~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~-------~~I~iwd~~~~~~~--~~l~~~~~~~~  218 (321)
                       .....+.|..||.++++..... ....+..++|+++  .++++..       +.|.+|++....+.  ..+... ....
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~  240 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGL  240 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSC
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCC
Confidence             0001256888888777654333 2235677899876  3666533       58999998654421  122111 1111


Q ss_pred             eEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC
Q 020784          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg  280 (321)
                      .-.+..+.++.+.+  +..+ .|.+|+...+.+..+..+. .+.+++|+++++.|..++.++
T Consensus       241 pdgi~~d~~G~lwv--~~~~-gv~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          241 PDGFCVDRGGWLWS--SSGT-GVCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             CCSEEECTTSCEEE--CCSS-EEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             CCeEEECCCCCEEE--ecCC-cEEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            12234455667665  3444 4888887666566666555 599999999998777776554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.43  E-value=0.00012  Score=66.22  Aligned_cols=183  Identities=8%  Similarity=0.040  Sum_probs=112.6

Q ss_pred             CCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC
Q 020784           97 HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (321)
Q Consensus        97 g~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (321)
                      +..+..++. +.+..+|.++++.......  ...+...-.. ....+.+.+       .++.|..+|.++|+.+......
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~--~~~~~~~p~~-~~~~v~v~~-------~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKV--AGEALSRPVV-SDGLVLIHT-------SNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--SSCCCSCCEE-ETTEEEEEC-------TTSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeC--CCceEcCCEE-ECCEEEEEc-------CCCeEEEEECCCCcEEEEEeCC
Confidence            334445554 5688999999988776654  2222111111 234455544       4688999999999988777664


Q ss_pred             Cce------eEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCC----------C-ceEEEeeCCCceEEEeecCC
Q 020784          176 SEV------RSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP----------K-GLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       176 ~~v------~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~----------~-~~~~~s~~~d~~~la~sGs~  237 (321)
                      ..+      .......+.++++. ++.|..+|..+++.+.++......          + ....+.   ++.+++  ++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~--~~~  247 (376)
T 3q7m_A          173 MPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFA--LAY  247 (376)
T ss_dssp             C-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE---TTEEEE--ECT
T ss_pred             CCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEE--Eec
Confidence            433      22334456666665 469999999999988777643210          0 111111   234444  567


Q ss_pred             CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       238 dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      +|.+..+|..++...-.. .......+...  +..|..++.++. |..+|..+|+.+.+..
T Consensus       248 ~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          248 NGNLTALDLRSGQIMWKR-ELGSVNDFIVD--GNRIYLVDQNDR-VMALTIDGGVTLWTQS  304 (376)
T ss_dssp             TSCEEEEETTTCCEEEEE-CCCCEEEEEEE--TTEEEEEETTCC-EEEEETTTCCEEEEEC
T ss_pred             CcEEEEEECCCCcEEeec-cCCCCCCceEE--CCEEEEEcCCCe-EEEEECCCCcEEEeec
Confidence            888988888766544211 12334445443  556666778999 9999999999887765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.37  E-value=3.6e-05  Score=67.90  Aligned_cols=184  Identities=10%  Similarity=-0.034  Sum_probs=114.7

Q ss_pred             CCCEEEEEc-CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee
Q 020784           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (321)
Q Consensus        96 dg~~lasg~-~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (321)
                      +|. |..|+ ++++..+|.+ ++....... +...+..+....++. +.+++       .++.|..+|.+ ++.+..+..
T Consensus       107 ~~~-l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~~g~-l~vgt-------~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A          107 EDI-LYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPIVSEDGT-IYVGS-------NDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             TTE-EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTSC-EEEEC-------TTSEEEEECTT-SCEEEEEEC
T ss_pred             CCE-EEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeEEcCCCE-EEEEc-------CCCEEEEECCC-CCEeEEEec
Confidence            555 44555 5678888877 655544443 122233333333444 44444       35889999998 777666665


Q ss_pred             CC-ceeEEEEe-CCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE
Q 020784          175 RS-EVRSVKLR-RDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (321)
Q Consensus       175 ~~-~v~~v~~~-~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~  252 (321)
                      .. .+.++... ...+.+++ +.|..|| .+++.+..+......+....+  +.++.+.+  |+.+|.+..++...+.+.
T Consensus       175 ~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g~l~v--~t~~~gl~~~~~~g~~~~  248 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAI--SEDGTIYV--TSLDGHLYAINPDGTEKW  248 (330)
T ss_dssp             SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEE--CTTSCEEE--EETTTEEEEECTTSCEEE
T ss_pred             CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEE--CCCCeEEE--EcCCCeEEEECCCCCEeE
Confidence            43 45556664 45577777 9999999 777776666654433333343  44556655  456667776775445555


Q ss_pred             EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       253 ~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      .+......+.++.+.++|.+. .++.+|. |..+|. +|+.+..+..+
T Consensus       249 ~~~~~~~~~~~~~~~~~g~l~-v~t~~gg-l~~~d~-~g~~~~~~~~~  293 (330)
T 3hxj_A          249 RFKTGKRIESSPVIGNTDTIY-FGSYDGH-LYAINP-DGTEKWNFETG  293 (330)
T ss_dssp             EEECSSCCCSCCEECTTSCEE-EECTTCE-EEEECT-TSCEEEEEECS
T ss_pred             EeeCCCCccccceEcCCCeEE-EecCCCC-EEEECC-CCcEEEEEEcC
Confidence            555555556677777777654 5777888 889995 78888777644

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.36  E-value=0.00014  Score=67.54  Aligned_cols=174  Identities=11%  Similarity=0.097  Sum_probs=110.0

Q ss_pred             cCCCeEEEEeCCCCCCCCCCcEEEEeCCCC----cEEEEEe---e----C-CceeEEEEeCCeEEEEE--C------CEE
Q 020784          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS---F----R-SEVRSVKLRRDRIIVVL--E------QKI  196 (321)
Q Consensus       137 ~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~----~~~~~~~---~----~-~~v~~v~~~~~~~~~~~--~------~~I  196 (321)
                      .+.+.+.+.+.      .+++|.|+|+.+.    +.+..++   .    . .....+.+.+++++++.  +      +.|
T Consensus        93 ~~r~~l~v~~l------~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGL------RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBT------TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccC------CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeE
Confidence            34555655553      3589999999755    5666663   1    1 24556777788766642  2      589


Q ss_pred             EEEEcCCcEEEEEEeccCCCC-ce--EEEeeCCCceEEEeec------------------CCCCcEEEEeeCCcce-EEe
Q 020784          197 FVYNFADLKLLHQIETIANPK-GL--CAVSQGVGSLVLVCPG------------------LQKGQVRVEHYASKRT-KFI  254 (321)
Q Consensus       197 ~iwd~~~~~~~~~l~~~~~~~-~~--~~~s~~~d~~~la~sG------------------s~dg~V~i~d~~~~~~-~~l  254 (321)
                      .++|..+++.+.++.....+. ..  +.+++  +++.++++.                  ..+..|.+||+.++.+ .++
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence            999999999999887543332 12  34455  446666532                  2367999999987653 344


Q ss_pred             ec--cccceeEEEE--CCCCCEEEEEeC------CCcEEEEEEcCCCcEE--EEE--eC-----------------CCcc
Q 020784          255 MA--HDSRIACFAL--TQDGQLLATSST------KGTLVRIFNTLDGTLL--QEE--CC-----------------PSIS  303 (321)
Q Consensus       255 ~~--H~~~V~~vaf--spdg~~las~S~------Dgt~IrIWd~~tg~~i--~~~--~~-----------------g~~~  303 (321)
                      ..  .....+.|.|  +|+|+++..+++      +++ |-+|....|+.-  +.+  ..                 +...
T Consensus       245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            43  2234666766  999998777765      445 877776655421  111  11                 2335


Q ss_pred             eeEEEeecCceEEEee
Q 020784          304 AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       304 ~~~~~s~d~~~la~~~  319 (321)
                      +.+.+|+||+||.|+-
T Consensus       324 a~I~lS~DGrfLYVSn  339 (462)
T 2ece_A          324 TDIDISLDDKFLYLSL  339 (462)
T ss_dssp             CCEEECTTSCEEEEEE
T ss_pred             eEEEECCCCCEEEEEe
Confidence            6678999999998863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.33  E-value=1.7e-05  Score=71.30  Aligned_cols=196  Identities=12%  Similarity=0.065  Sum_probs=113.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc------CCcEEEEEecCCceeEEeeee-----cCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~------~~gv~vw~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      +-..+..++|+++|+++++..      ...+.+||..+++.+....+.     +......+.+.++...+.++..+..  
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--  142 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--  142 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--
Confidence            345799999999998777653      356889999888765554431     1123456666655445544432100  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeeC------------------------------CceeEEEEeCCe--EEEEEC--CEEEE
Q 020784          153 YPLNKVMIWDDHQSRCIGELSFR------------------------------SEVRSVKLRRDR--IIVVLE--QKIFV  198 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~------------------------------~~v~~v~~~~~~--~~~~~~--~~I~i  198 (321)
                       .++.|.+||..+++....+..+                              ..+..++++++.  ++++..  ..|..
T Consensus       143 -~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          143 -DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR  221 (343)
T ss_dssp             -GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred             -CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence             2478999999888766544220                              124557777653  444432  24444


Q ss_pred             EEcC---CcE-----E---EEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeec--cccceeEEE
Q 020784          199 YNFA---DLK-----L---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFA  265 (321)
Q Consensus       199 wd~~---~~~-----~---~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~--H~~~V~~va  265 (321)
                      ++..   .+.     .   +..+ ++.....-+++  ++++.+++ +...++.|.+|+...+.+..+..  +-..+.+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~--d~~G~l~v-a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va  297 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERY-SEKPICDGISI--DKDHNIYV-GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFN  297 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEE--CTTCCEEE-EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEec-ccCCCCceEEE--CCCCCEEE-EccCCCeEEEEECCCCCEEEEEECCceecCCeeE
Confidence            4421   110     0   0111 11111112344  44556666 36777899999984444443332  345689999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEE
Q 020784          266 LTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       266 fspdg~~las~S~Dgt~IrIWd  287 (321)
                      |.++|+++++.+..+. +.+|+
T Consensus       298 ~~~~g~l~v~~~~~~~-~~~f~  318 (343)
T 2qe8_A          298 FGSDGYLYFDCNQLHH-SAPLN  318 (343)
T ss_dssp             ECTTSCEEEEECCGGG-SGGGB
T ss_pred             ECCCCcEEEEeCcccc-ccccc
Confidence            9999999988876655 54444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.21  E-value=1.3e-07  Score=86.59  Aligned_cols=143  Identities=11%  Similarity=0.014  Sum_probs=75.5

Q ss_pred             CCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeC-CeEEEE--ECCEEEEEEcCCcEEEEEEeccC
Q 020784          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LEQKIFVYNFADLKLLHQIETIA  214 (321)
Q Consensus       138 ~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~--~~~~I~iwd~~~~~~~~~l~~~~  214 (321)
                      ++..+++.+       .|+.|..||..+|+.+..+.. ..+.+..+.. +.++++  .++.|+.||..+++.+.++..+.
T Consensus         8 ~~~~v~~gs-------~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~   79 (369)
T 2hz6_A            8 PETLLFVST-------LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI   79 (369)
T ss_dssp             CTTEEEEEE-------TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred             eCCEEEEEc-------CCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence            355666666       579999999999999888776 4444433333 334444  35799999998887766654321


Q ss_pred             CC-C-ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 020784          215 NP-K-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       215 ~~-~-~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg  291 (321)
                      .. . ....+.  .+ ..++ .|+.+|.|+.||..++... .+..+.    .+.++|++..+++++.|++ |+.||.++|
T Consensus        80 ~~~~~~sp~~~--~~-~~v~-~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG  150 (369)
T 2hz6_A           80 PELVQASPCRS--SD-GILY-MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR  150 (369)
T ss_dssp             HHHHTTCSCC--------CC-CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSS
T ss_pred             ccccccCceEe--cC-CEEE-EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC
Confidence            10 0 011111  12 2343 4888999999998876643 444443    2456678888999999999 999999999


Q ss_pred             cEEEEE
Q 020784          292 TLLQEE  297 (321)
Q Consensus       292 ~~i~~~  297 (321)
                      +++.++
T Consensus       151 ~~~W~~  156 (369)
T 2hz6_A          151 ELRWNA  156 (369)
T ss_dssp             SCCCEE
T ss_pred             CEEEeE
Confidence            876554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.16  E-value=0.00012  Score=72.28  Aligned_cols=191  Identities=8%  Similarity=0.061  Sum_probs=116.7

Q ss_pred             CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCc----------e-EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG----------I-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        96 dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~----------v-~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      +|..++++.++.+.-+|..+++.+...... ...          + ..+.+  ....+.+.+       .|+.|..+|.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~-------~dg~l~alD~~  146 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQ-IDRSTGFKGCCDVVNRGVAL--WKGKVYVGA-------WDGRLIALDAA  146 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCC-CCGGGGGGSSSCSCCCCCEE--ETTEEEEEC-------TTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCC-CCccccccccccCCCCCceE--ECCEEEEEc-------CCCEEEEEECC
Confidence            444444444455777888888887666541 100          0 11111  344555554       46899999999


Q ss_pred             CCcEEEEEeeC------Ccee-EEEEeCCeEEEEE-------CCEEEEEEcCCcEEEEEEeccCCCC-------------
Q 020784          165 QSRCIGELSFR------SEVR-SVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK-------------  217 (321)
Q Consensus       165 ~~~~~~~~~~~------~~v~-~v~~~~~~~~~~~-------~~~I~iwd~~~~~~~~~l~~~~~~~-------------  217 (321)
                      +|+.+-.+...      ..+. ...+..+.++++.       ++.|+.||..+++++.++.......             
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~  226 (677)
T 1kb0_A          147 TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA  226 (677)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             CCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence            99998887754      1222 2223456666654       4789999999999998886532210             


Q ss_pred             -------------------ceEEEeeCCCceEEEeecCCCC-------------------cEEEEeeCCcceE-Eee--c
Q 020784          218 -------------------GLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTK-FIM--A  256 (321)
Q Consensus       218 -------------------~~~~~s~~~d~~~la~sGs~dg-------------------~V~i~d~~~~~~~-~l~--~  256 (321)
                                         ...++.+.  +.++.+ +..++                   .|..+|..++.+. .++  .
T Consensus       227 ~~w~~~g~~~~~~~g~~~w~~~~~d~~--~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~  303 (677)
T 1kb0_A          227 RTWDPSGKWWEAGGGGTMWDSMTFDAE--LNTMYV-GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP  303 (677)
T ss_dssp             TTSCGGGCHHHHCEECCCCSCEEEETT--TTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred             ccccccCceeEeCCCcccccceeEcCC--CCEEEE-ECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC
Confidence                               12344433  333332 44333                   3666888777654 333  2


Q ss_pred             cc-------cceeEEEECCCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          257 HD-------SRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       257 H~-------~~V~~vafspdg---~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      |.       .....+....+|   ..|+.++.+|. |.++|..+|+++..++.+
T Consensus       304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~  356 (677)
T 1kb0_A          304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFV  356 (677)
T ss_dssp             TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESS
T ss_pred             CcccccccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEecccccc
Confidence            32       223333444577   68899999999 999999999999877643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.14  E-value=0.00015  Score=63.79  Aligned_cols=184  Identities=13%  Similarity=0.076  Sum_probs=113.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      .+.++.+.++|.+++...++++..||.+ ++....... ....+..+....++. +.+ +       . +.|..+| .++
T Consensus       138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~-l~v-~-------t-~~l~~~d-~~g  204 (330)
T 3hxj_A          138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGT-IYF-G-------S-DKVYAIN-PDG  204 (330)
T ss_dssp             CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCC-EEE-E-------S-SSEEEEC-TTS
T ss_pred             eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCE-EEE-E-------e-CEEEEEC-CCC
Confidence            4556677778886655445778888887 655544443 122333333333443 323 3       2 5689999 677


Q ss_pred             cEEEEEeeC-CceeEEEEeCC-eEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE
Q 020784          167 RCIGELSFR-SEVRSVKLRRD-RIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (321)
Q Consensus       167 ~~~~~~~~~-~~v~~v~~~~~-~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i  243 (321)
                      +.+...... ..+.++...++ .+.+++. +.|..+|. +++.+..+...........+  +.++.+.+  |+.+|.|..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~--~~~g~l~v--~t~~ggl~~  279 (330)
T 3hxj_A          205 TEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVI--GNTDTIYF--GSYDGHLYA  279 (330)
T ss_dssp             CEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEE--CTTSCEEE--ECTTCEEEE
T ss_pred             cEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceE--cCCCeEEE--ecCCCCEEE
Confidence            766555543 35677777766 6777775 68888884 55666666554332233333  43455554  577777877


Q ss_pred             EeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       244 ~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +|...+....+......+.++...++|.+++ ++.+|. +++...+.
T Consensus       280 ~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~-~~~~~~~~  324 (330)
T 3hxj_A          280 INPDGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGK-FYALFNLE  324 (330)
T ss_dssp             ECTTSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSC-EEEEEC--
T ss_pred             ECCCCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCe-EEEEeccc
Confidence            7754344445555566788899988998766 777998 88776554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.14  E-value=0.0035  Score=55.03  Aligned_cols=221  Identities=9%  Similarity=0.020  Sum_probs=123.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .....++|+++|+++++... +.|..||.+.. .......  .+....+++..++++++.-.+.     ....|..+|..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~--~~~p~gia~~~dG~l~vad~~~-----~~~~v~~~d~~  103 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV--EGKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVKS  103 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC--SSEEEEEEECTTSCEEEEEECT-----TSCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC--CCCceeEEEcCCCcEEEEeccC-----CcceEEEEcCC
Confidence            35778999999997777655 44667765542 2222332  4456677777888754443321     11246677777


Q ss_pred             CCcEEEEEeeCC--ceeEEEEeC-CeEEEEE--CCEEEEEEcCCcEE-EEEEecc-------CCCCceEEEeeCCCceEE
Q 020784          165 QSRCIGELSFRS--EVRSVKLRR-DRIIVVL--EQKIFVYNFADLKL-LHQIETI-------ANPKGLCAVSQGVGSLVL  231 (321)
Q Consensus       165 ~~~~~~~~~~~~--~v~~v~~~~-~~~~~~~--~~~I~iwd~~~~~~-~~~l~~~-------~~~~~~~~~s~~~d~~~l  231 (321)
                      +++.........  ....++... ..++++.  .+.|.++|...++. +......       ........+++++. .++
T Consensus       104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~-~ly  182 (306)
T 2p4o_A          104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLY  182 (306)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEE
T ss_pred             CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCC-EEE
Confidence            777543333221  223333333 3344443  36888888765431 2111110       11112334455432 233


Q ss_pred             EeecCCCCcEEEEeeCC-cce---EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEE--EEeCC-Ccce
Q 020784          232 VCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EECCP-SISA  304 (321)
Q Consensus       232 a~sGs~dg~V~i~d~~~-~~~---~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~--~~~~g-~~~~  304 (321)
                      + +-...+.|..+++.. +.+   ..+. .......++++++|+++++....+. |.+||.. |+...  .+..+ ....
T Consensus       183 v-~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~~~~p~  258 (306)
T 2p4o_A          183 V-SNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGST  258 (306)
T ss_dssp             E-EETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             E-EeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeecccccCCce
Confidence            3 456677888888753 221   1221 1245788999999998887776778 9999975 77633  23322 2334


Q ss_pred             eEEEe---ecCceEEEee
Q 020784          305 QSGLW---LSSAWLRVLR  319 (321)
Q Consensus       305 ~~~~s---~d~~~la~~~  319 (321)
                      .++|.   +|+.+|.++.
T Consensus       259 ~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          259 AVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEEECCSTTTTTEEEEEE
T ss_pred             EEEEecccCCCCEEEEEC
Confidence            45665   6778877754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.11  E-value=0.0034  Score=53.79  Aligned_cols=209  Identities=5%  Similarity=-0.121  Sum_probs=114.3

Q ss_pred             CCEEEEEcCCcEEEEEecCCcee-----EEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEE
Q 020784           97 HGCFAAGTDHGFRIYNCDPFREI-----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (321)
Q Consensus        97 g~~lasg~~~gv~vw~~~~~~~~-----~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~  171 (321)
                      |.+|..+..+.|+.++++.....     ..... .......+++.++.+.+.++..      ..+.|.++|...+.....
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~   73 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTI   73 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEEC------CCCEEEEEecCCCCcEEE
Confidence            34555555556777777654321     01110 0123456677776666666653      247899999876554333


Q ss_pred             EeeC-CceeEEEEeC--CeEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC-CceEEEeecCC--CCcEEE
Q 020784          172 LSFR-SEVRSVKLRR--DRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQ--KGQVRV  243 (321)
Q Consensus       172 ~~~~-~~v~~v~~~~--~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~-d~~~la~sGs~--dg~V~i  243 (321)
                      +... ..+..+.+++  ..++++..  +.|.++++..... ..+.... ......+..++ ++.+.++ ...  .+.|..
T Consensus        74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~-~~~P~~i~vd~~~g~lyv~-~~~~~~~~I~~  150 (267)
T 1npe_A           74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTG-LVNPRGIVTDPVRGNLYWT-DWNRDNPKIET  150 (267)
T ss_dssp             ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-CSSEEEEEEETTTTEEEEE-ECCSSSCEEEE
T ss_pred             EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECC-CCCccEEEEeeCCCEEEEE-ECCCCCcEEEE
Confidence            3222 3678888875  45666643  5899999864322 2222111 11223333444 2344442 322  467777


Q ss_pred             EeeCCcceEEee-ccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          244 EHYASKRTKFIM-AHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       244 ~d~~~~~~~~l~-~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      .+........+. ..-...+.+++++++.+| ++-...+. |.++|+..+.....+..+....  .++.++.+|-++
T Consensus       151 ~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~P~--gi~~d~~~lyva  224 (267)
T 1npe_A          151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGLQYPF--AVTSYGKNLYYT  224 (267)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECCCSEE--EEEEETTEEEEE
T ss_pred             EecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecCCCCce--EEEEeCCEEEEE
Confidence            666544433332 233568999999986654 55555566 9999998655444343322222  344556666554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.08  E-value=0.0033  Score=62.85  Aligned_cols=194  Identities=11%  Similarity=0.131  Sum_probs=123.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      |.++...++|++.+....+|+..|+..+.+........+...+..+....++. +.+++       .++.|.+||..+++
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt-------~~~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVAT-------EGAGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEE-------BSSCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEE-------CCCCeEEEeCCCCe
Confidence            88999999998777544578889987665432211110133455555444444 33443       23459999988776


Q ss_pred             EEEEEee--------CCceeEEEEeC-CeEEEEECCEEEEEEcCCcEEEEEEeccC------CCCceEEEeeCCCceEEE
Q 020784          168 CIGELSF--------RSEVRSVKLRR-DRIIVVLEQKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       168 ~~~~~~~--------~~~v~~v~~~~-~~~~~~~~~~I~iwd~~~~~~~~~l~~~~------~~~~~~~~s~~~d~~~la  232 (321)
                      .......        ...|.++...+ ..+.+++.+.|.+||..+++.. .+....      ....+.++..+.++.+-+
T Consensus       247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  325 (795)
T 4a2l_A          247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGGMWL  325 (795)
T ss_dssp             EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred             EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence            5432211        13588888764 4688888778999998876643 332211      113466777777777665


Q ss_pred             eecCCCCcEEEEeeCCcceEEeec-------cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 020784          233 CPGLQKGQVRVEHYASKRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~~l~~-------H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i  294 (321)
                        |+.++-|.+++........+..       ....|.+++..++|.+.+ |..++. |..||..+++..
T Consensus       326 --gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~G-l~~~~~~~~~~~  390 (795)
T 4a2l_A          326 --GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGG-LNLYNPITQRFT  390 (795)
T ss_dssp             --EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSC-EEEECTTTCCEE
T ss_pred             --EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCC-eEEEcCCCCcEE
Confidence              6776777777765554443321       245699999999998765 777878 889999887754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.08  E-value=0.00018  Score=70.85  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEeecCc-
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLWLSSA-  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s~d~~-  313 (321)
                      .+|.|..||..++++.--..+...+....+...|.++..++.||. +++||.++|+.+.+++.+...  .-+.+..+|+ 
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCccc-chhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            457788899888775532233344444455556778888999999 999999999999998776442  2335567774 


Q ss_pred             eEEEee
Q 020784          314 WLRVLR  319 (321)
Q Consensus       314 ~la~~~  319 (321)
                      |++++.
T Consensus       515 yva~~~  520 (668)
T 1kv9_A          515 YVAIMA  520 (668)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.08  E-value=0.0047  Score=56.92  Aligned_cols=130  Identities=11%  Similarity=0.156  Sum_probs=93.1

Q ss_pred             CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEE-e
Q 020784          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL-R  184 (321)
Q Consensus       106 ~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~-~  184 (321)
                      ..|.|-|+.......++..  ...-  .-++|..+.+|+-.|        +++.|+|+++.+.+..+.+...|.-..| +
T Consensus        48 ~~vvIiDl~~~~~~~rrpi--~Ads--AIMnP~~~iiALrag--------~~lQiFnle~K~klks~~~~e~VvfWkWis  115 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI--SADS--AIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC--CCSE--EEECSSSSCEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred             CeEEEEECCCCCcceeccc--ccce--eeeCCCCcEEEEecC--------CeEEEEchHHhhhhcceecCCCceEEEecC
Confidence            4588999988766655554  2332  346788888888762        7899999999999999999888877776 5


Q ss_pred             CCeEEEEECCEEEEEEcCC-cEEEEEEeccCC--CCceEEEeeCCCceEEEeecC------CCCcEEEEeeC
Q 020784          185 RDRIIVVLEQKIFVYNFAD-LKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGL------QKGQVRVEHYA  247 (321)
Q Consensus       185 ~~~~~~~~~~~I~iwd~~~-~~~~~~l~~~~~--~~~~~~~s~~~d~~~la~sGs------~dg~V~i~d~~  247 (321)
                      .+.+.++++..|+-|++.. ...++.|+.|..  ...++.+..+++..+++..|-      ..|.+.++...
T Consensus       116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e  187 (494)
T 1bpo_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  187 (494)
T ss_dssp             TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred             CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence            6788999999999999963 456667766543  344667777777777765443      23445555543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.05  E-value=0.00037  Score=68.91  Aligned_cols=190  Identities=14%  Similarity=0.140  Sum_probs=113.1

Q ss_pred             CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCc----------e-EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG----------I-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        96 dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~----------v-~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      +|..++++.+..+.-+|..+++++...... ...          + ..+.  .....+++.+       .|+.|..+|.+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~--~~~g~v~v~~-------~dg~l~AlDa~  139 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQ-SDRHRAGEACCDAVNRGVA--VWKGKVYVGV-------LDGRLEAIDAK  139 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCC-CCGGGGGGCTTCSCCCCCE--EETTEEEEEC-------TTSEEEEEETT
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCC-CCccccccccccCCCCccE--EECCEEEEEc-------cCCEEEEEECC
Confidence            444444444455778899999887766531 110          0 0011  1244555554       47999999999


Q ss_pred             CCcEEEEEeeC------Ccee-EEEEeCCeEEEEE-------CCEEEEEEcCCcEEEEEEeccC-CCC------------
Q 020784          165 QSRCIGELSFR------SEVR-SVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIA-NPK------------  217 (321)
Q Consensus       165 ~~~~~~~~~~~------~~v~-~v~~~~~~~~~~~-------~~~I~iwd~~~~~~~~~l~~~~-~~~------------  217 (321)
                      +|+.+-.+...      ..+. +-.+..+.+++..       ++.|+.||..+++++.++.... .+.            
T Consensus       140 TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~  219 (689)
T 1yiq_A          140 TGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAA  219 (689)
T ss_dssp             TCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHH
T ss_pred             CCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccc
Confidence            99988776653      1111 1123345555543       3689999999999988886421 100            


Q ss_pred             ------------------ceEEEeeCCCceEEEeecCCCCc-------------------EEEEeeCCcceE-Eeec--c
Q 020784          218 ------------------GLCAVSQGVGSLVLVCPGLQKGQ-------------------VRVEHYASKRTK-FIMA--H  257 (321)
Q Consensus       218 ------------------~~~~~s~~~d~~~la~sGs~dg~-------------------V~i~d~~~~~~~-~l~~--H  257 (321)
                                        ...++.+  +..++.+ +..++.                   |..+|..++.+. .++.  |
T Consensus       220 ~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~  296 (689)
T 1yiq_A          220 KTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG  296 (689)
T ss_dssp             TTCCSSTHHHHCEECCCCSCEEEET--TTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             cccCCceeeecCCCCccccceeEcC--CCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc
Confidence                              1233433  3344443 555543                   666888877754 3332  3


Q ss_pred             c-------cceeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          258 D-------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       258 ~-------~~V~~vafspdg~---~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      .       ..+....+..+|+   .++.++.+|. ++++|.++|+++...+.
T Consensus       297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~  347 (689)
T 1yiq_A          297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKGI  347 (689)
T ss_dssp             CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEES
T ss_pred             ccccccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccccc
Confidence            2       1222222223565   7888999999 99999999999865543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.05  E-value=0.0047  Score=54.52  Aligned_cols=198  Identities=11%  Similarity=0.086  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeec-------------------CCceEEEEEecCCCeEEEEeCC
Q 020784           89 LHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFER-------------------GGGIGVVEMLFRCNILALVGGG  148 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~-------------------~~~v~~v~~~~~~~~~~~~sg~  148 (321)
                      .+++|+++|+++.++.. ++|..|+.+..+... .....                   .+....+.+..+...+.++.. 
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~-   99 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC-   99 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence            45889999986666655 557777766543321 11000                   123455666652334555542 


Q ss_pred             CCCCCCCCcEEEEeCCCCcEEEEEe-eC----CceeEEEEeC-C-eEEEEEC-------------------CEEEEEEcC
Q 020784          149 PDPQYPLNKVMIWDDHQSRCIGELS-FR----SEVRSVKLRR-D-RIIVVLE-------------------QKIFVYNFA  202 (321)
Q Consensus       149 ~~~~~~d~~v~iWD~~~~~~~~~~~-~~----~~v~~v~~~~-~-~~~~~~~-------------------~~I~iwd~~  202 (321)
                            .+.|..+|..++....... ..    ..+..+.+.+ + .++++..                   +.|..||..
T Consensus       100 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A          100 ------YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             ------TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             ------CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence                  2458888877654221111 11    2356788877 5 4555531                   468888877


Q ss_pred             CcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc---ceEEeeccccceeEEEECCCCCEEEEEeC-
Q 020784          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST-  278 (321)
Q Consensus       203 ~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~---~~~~l~~H~~~V~~vafspdg~~las~S~-  278 (321)
                      +++..........+. -++++  +++..|.++-..++.|.+++....   ....+....+ ...+++.++|.+.++... 
T Consensus       174 ~~~~~~~~~~~~~p~-gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          174 TKETTLLLKELHVPG-GAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             TTEEEEEEEEESCCC-EEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred             CCEEEEeccCCccCc-ceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence            665433222222222 23444  454533333455678888777642   2222222223 888999999998777654 


Q ss_pred             ---------CCcEEEEEEcCCCcEEEEEeCC
Q 020784          279 ---------KGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       279 ---------Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                               .+. |.++|- .|+.+..+...
T Consensus       250 ~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~  278 (322)
T 2fp8_A          250 LDGNMHGRVDPK-GIKFDE-FGNILEVIPLP  278 (322)
T ss_dssp             TTSSTTSCEEEE-EEEECT-TSCEEEEEECC
T ss_pred             ccccccCCCccE-EEEECC-CCCEEEEEECC
Confidence                     345 777775 58888877543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.97  E-value=0.002  Score=62.11  Aligned_cols=80  Identities=16%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCc-
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSA-  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~-  313 (321)
                      .+|.|..+|..++.+.--..+...+....+...+.++..++.||. |+.||.++|+++.+++.+.....  +.+..+|+ 
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~-l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGY-LKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCe-EEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            357788888877665422223333444333434556666899999 99999999999999987654322  34457775 


Q ss_pred             eEEE
Q 020784          314 WLRV  317 (321)
Q Consensus       314 ~la~  317 (321)
                      |+++
T Consensus       521 yv~~  524 (571)
T 2ad6_A          521 YIGS  524 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.94  E-value=0.0076  Score=60.22  Aligned_cols=197  Identities=12%  Similarity=0.087  Sum_probs=123.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeee-------cCCceEEEEEecCCCeEEEEeCCCCCCCCCCc
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~  157 (321)
                      ...|.++....+|.+.+...++|+..|+..+..........       ....|..+....+++.+.+++       .++.
T Consensus       356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-------~~~G  428 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-------HAGG  428 (795)
T ss_dssp             CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-------TTTE
T ss_pred             CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-------CcCc
Confidence            45799999999998776555578999987765433221100       123466666555665355555       3467


Q ss_pred             EEEEeCCCCcEEEEEe----e-CCceeEEEEeC-CeEEEEECCEEEEEEcCCcEEEEEEecc-----CCCCceEEEeeCC
Q 020784          158 VMIWDDHQSRCIGELS----F-RSEVRSVKLRR-DRIIVVLEQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQGV  226 (321)
Q Consensus       158 v~iWD~~~~~~~~~~~----~-~~~v~~v~~~~-~~~~~~~~~~I~iwd~~~~~~~~~l~~~-----~~~~~~~~~s~~~  226 (321)
                      |.+||.++++...-..    . ...|.++...+ ..+.+++.+.+.+||..+++... +...     .....+.++..+.
T Consensus       429 l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~  507 (795)
T 4a2l_A          429 LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTT-IEKEKDGTPVVSKQITTLFRDS  507 (795)
T ss_dssp             EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEE-CCBCTTCCBCCCCCEEEEEECT
T ss_pred             eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEE-ccccccccccCCceEEEEEECC
Confidence            9999998876543221    1 23578887765 46788887889999988765432 2211     1113356666777


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcceEEee-------ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~~~l~-------~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      ++.+.+  |+.+| +..++..++.. .+.       .+...|.+|...++|.+.++.. . . |..||..+++. ..+
T Consensus       508 ~g~lWi--gt~~G-l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-G-l~~~d~~~~~~-~~~  577 (795)
T 4a2l_A          508 HKRLWI--GGEEG-LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-G-FYCFNEKDKQI-KRY  577 (795)
T ss_dssp             TCCEEE--EESSC-EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-C-EEEEETTTTEE-EEE
T ss_pred             CCCEEE--EeCCc-eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-C-ceeECCCCCcE-EEe
Confidence            777665  34444 55566554443 322       2356799999999999776543 3 6 77899887654 344

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.83  E-value=0.0077  Score=58.20  Aligned_cols=80  Identities=18%  Similarity=0.086  Sum_probs=53.3

Q ss_pred             CCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEeecC-c
Q 020784          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWLSS-A  313 (321)
Q Consensus       238 dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~d~-~  313 (321)
                      +|.|.-||..++++. ... +...+..-.+...|.++..|+.||. ++.||.++|+++-+++.+....  -+.+..+| +
T Consensus       465 ~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHK-EHLPLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEE-ESSCCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEec-CCCCCcccceEeCCCEEEEECCCCc-EEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            567777888777654 332 2223322222224566777999999 9999999999999998765533  34566788 5


Q ss_pred             eEEEee
Q 020784          314 WLRVLR  319 (321)
Q Consensus       314 ~la~~~  319 (321)
                      |++++.
T Consensus       543 Yv~~~~  548 (582)
T 1flg_A          543 YLGVTV  548 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            787753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.78  E-value=0.0052  Score=59.27  Aligned_cols=152  Identities=6%  Similarity=-0.073  Sum_probs=83.8

Q ss_pred             CCEEEEEcC-CcEEEEEecCCceeEEeeeec-C--CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEE
Q 020784           97 HGCFAAGTD-HGFRIYNCDPFREIFRRDFER-G--GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (321)
Q Consensus        97 g~~lasg~~-~gv~vw~~~~~~~~~~~~~~~-~--~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~  172 (321)
                      +..+..++. ..+..+|..+++.+....... .  ..+...-.. ....+++.+.+.+. -.++.|..+|.++|+.+-.+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEE
Confidence            445556655 447788999998877665410 0  011110001 13344444321100 01589999999999988776


Q ss_pred             eeCCce---------------------------------------eEEEEeC--CeEEEEEC-----------------C
Q 020784          173 SFRSEV---------------------------------------RSVKLRR--DRIIVVLE-----------------Q  194 (321)
Q Consensus       173 ~~~~~v---------------------------------------~~v~~~~--~~~~~~~~-----------------~  194 (321)
                      ......                                       ..+.+.+  ..+++.+.                 +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            543211                                       1133333  35555542                 2


Q ss_pred             EEEEEEcCCcEEEEEEeccCCC------C-ceEEEeeCCCce---EEEeecCCCCcEEEEeeCCcce
Q 020784          195 KIFVYNFADLKLLHQIETIANP------K-GLCAVSQGVGSL---VLVCPGLQKGQVRVEHYASKRT  251 (321)
Q Consensus       195 ~I~iwd~~~~~~~~~l~~~~~~------~-~~~~~s~~~d~~---~la~sGs~dg~V~i~d~~~~~~  251 (321)
                      .|..+|..+++.+..++...+.      . ..+.+....++.   +++ .++.+|.+.+.|..++.+
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~-~~~~~G~l~~lD~~tG~~  338 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS-HIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE-EECTTSEEEEEETTTCCE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE-EeCCCcEEEEEECCCCCE
Confidence            5999999999998888753211      1 111122112343   344 478889999988777654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.75  E-value=0.0011  Score=65.36  Aligned_cols=190  Identities=15%  Similarity=0.177  Sum_probs=111.6

Q ss_pred             CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCc----------e-EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG----------I-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        96 dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~----------v-~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      +|..+++..+..+.-+|..+++.+...... ...          + ..+.+  ....+++.+       .|+.|..+|.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~-------~dg~l~alD~~  135 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPE-VAKVKARTSCCDAVNRGVAL--WGDKVYVGT-------LDGRLIALDAK  135 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCC-CCGGGGGGCTTCSCCCCCEE--EBTEEEEEC-------TTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCC-CCccccccccccCCccceEE--ECCEEEEEc-------CCCEEEEEECC
Confidence            444444444455777888888887666531 100          0 01111  234455554       46899999999


Q ss_pred             CCcEEEEEeeCC-----cee-EEEEeCCeEEEEE-------CCEEEEEEcCCcEEEEEEeccC-CCC-------------
Q 020784          165 QSRCIGELSFRS-----EVR-SVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIA-NPK-------------  217 (321)
Q Consensus       165 ~~~~~~~~~~~~-----~v~-~v~~~~~~~~~~~-------~~~I~iwd~~~~~~~~~l~~~~-~~~-------------  217 (321)
                      +|+.+-.+....     .+. .-.+..+.+++..       ++.|..||..+++++.++.... .+.             
T Consensus       136 tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~  215 (668)
T 1kv9_A          136 TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK  215 (668)
T ss_dssp             TCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             CCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence            999887776531     111 1123355565553       3689999999999998886421 110             


Q ss_pred             -----------------ceEEEeeCCCceEEEeecCCCC-------------------cEEEEeeCCcceE-Eee--ccc
Q 020784          218 -----------------GLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTK-FIM--AHD  258 (321)
Q Consensus       218 -----------------~~~~~s~~~d~~~la~sGs~dg-------------------~V~i~d~~~~~~~-~l~--~H~  258 (321)
                                       ...++.  ++..++.+ +..++                   .|.-+|..++.+. .++  .|.
T Consensus       216 ~~~g~~~w~~~~gg~~w~~~a~d--~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~  292 (668)
T 1kv9_A          216 TWQGDQYWKLGGGGTVWDSMAYD--PELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD  292 (668)
T ss_dssp             TCCSSCHHHHCEECCCCSCEEEE--TTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred             cCCccceeeeCCCCccccceEEc--CCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc
Confidence                             012333  33233332 55554                   3666888777654 333  233


Q ss_pred             -------cceeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          259 -------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       259 -------~~V~~vafspdg~---~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                             .++....+..+|+   .|+.++.+|. +.++|..+|+++...+.
T Consensus       293 ~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~  342 (668)
T 1kv9_A          293 SWDFTATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEKF  342 (668)
T ss_dssp             CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEES
T ss_pred             cccccCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEeccccc
Confidence                   2233333334665   6888999999 99999999999865543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.71  E-value=0.0049  Score=59.15  Aligned_cols=168  Identities=9%  Similarity=0.021  Sum_probs=111.6

Q ss_pred             CCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC--CceeEEEEe--C--CeEEEEE-------------------
Q 020784          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLR--R--DRIIVVL-------------------  192 (321)
Q Consensus       138 ~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~--~--~~~~~~~-------------------  192 (321)
                      +++.+.+...      .++.|.+-|+++.++...++..  ..+..+.+.  +  +.++++.                   
T Consensus       100 DG~~lfVnd~------~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A          100 DGRFLFMNDK------ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEET------TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCEEEEEcC------CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            6776666542      3578999999999988866543  457777762  3  4555553                   


Q ss_pred             CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC----------------------------------
Q 020784          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----------------------------------  238 (321)
Q Consensus       193 ~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d----------------------------------  238 (321)
                      ++.+.++|..+++.+.++....++. -+++++++  .++.++....                                  
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd-~~~~spdG--k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLD-NCDADYEG--KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCC-CEEECSSS--SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             CceEEEEECCCCeEEEEEEeCCCcc-ceEECCCC--CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            1479999999999999988654544 34556653  4444322221                                  


Q ss_pred             ---CcEEEEeeCC--cce--EEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCc------------EEEEEe
Q 020784          239 ---GQVRVEHYAS--KRT--KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT------------LLQEEC  298 (321)
Q Consensus       239 ---g~V~i~d~~~--~~~--~~l~~H~~~V~~vafspdg~~las~S~-Dgt~IrIWd~~tg~------------~i~~~~  298 (321)
                         +.|.|.|...  +..  ..+. -.....++.|+|||+++..++. +++ |.|+|+.+.+            .+.+..
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             eEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcC
Confidence               1355555544  111  1222 1235688999999997766654 666 9999999763            677888


Q ss_pred             CCCcceeEEEeecCceEEE
Q 020784          299 CPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       299 ~g~~~~~~~~s~d~~~la~  317 (321)
                      .|.....+.|+.|| ++-+
T Consensus       329 vG~gP~h~aF~~dG-~aY~  346 (595)
T 1fwx_A          329 LGLGPLHTAFDGRG-NAYT  346 (595)
T ss_dssp             CCSCEEEEEECTTS-EEEE
T ss_pred             CCCCcceEEECCCC-eEEE
Confidence            88888888999999 6544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.69  E-value=0.011  Score=57.36  Aligned_cols=82  Identities=13%  Similarity=0.105  Sum_probs=52.6

Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcce--eEEEeecC-c
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISA--QSGLWLSS-A  313 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~--~~~~s~d~-~  313 (321)
                      ..|.|.-||..++++.--..+..++..-.+.-.|.++..++.||. ++.||.++|+++-+++.+....  -+.+..+| +
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~-l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGY-LKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCe-EEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            346777788877765422222222222122224566666899999 9999999999999887655432  34556788 5


Q ss_pred             eEEEee
Q 020784          314 WLRVLR  319 (321)
Q Consensus       314 ~la~~~  319 (321)
                      |++++.
T Consensus       530 yv~~~~  535 (599)
T 1w6s_A          530 YVAIYY  535 (599)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            777753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.62  E-value=0.026  Score=50.63  Aligned_cols=188  Identities=12%  Similarity=0.165  Sum_probs=107.2

Q ss_pred             EEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecC----CCe--EEEEeCCCCCCCC--CCcEEEEeC--CCCcEE
Q 020784          100 FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR----CNI--LALVGGGPDPQYP--LNKVMIWDD--HQSRCI  169 (321)
Q Consensus       100 lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~--~~~~sg~~~~~~~--d~~v~iWD~--~~~~~~  169 (321)
                      |++--..|+.|||+ .++.+....   .+.+.-|.+.+.    +..  ++.++..     .  +++|++|++  .++. +
T Consensus        44 i~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R-----~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           44 ITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNR-----SEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             EEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEEC-----STTCCEEEEEEECTTTCC-E
T ss_pred             EEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCC-----CCCCCeEEEEEECCCCCc-e
Confidence            33433467999999 666655543   356666666542    222  4555533     3  488999966  4444 4


Q ss_pred             EEEe-------eC-CceeEEEE--eC--Ce-EEEEE--CCEEEEEEc-------CCcEEEEEEeccCCCCceEEEeeCCC
Q 020784          170 GELS-------FR-SEVRSVKL--RR--DR-IIVVL--EQKIFVYNF-------ADLKLLHQIETIANPKGLCAVSQGVG  227 (321)
Q Consensus       170 ~~~~-------~~-~~v~~v~~--~~--~~-~~~~~--~~~I~iwd~-------~~~~~~~~l~~~~~~~~~~~~s~~~d  227 (321)
                      ..+.       .. ..++.+|+  .+  .. .+.+.  ++.+..|++       .+.+++++|....++. -|.+... .
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E-gcvvDd~-~  191 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE-GMAADDE-Y  191 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE-EEEEETT-T
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc-eEEEcCC-C
Confidence            4441       11 46777887  43  22 23333  368888888       2457788888765433 3444322 3


Q ss_pred             ceEEEeecCCCCcEEEEeeC-----CcceE-Eee-cc-ccceeEEEE--CCCCC-EEEEEe-CCCcEEEEEEcC-CCcEE
Q 020784          228 SLVLVCPGLQKGQVRVEHYA-----SKRTK-FIM-AH-DSRIACFAL--TQDGQ-LLATSS-TKGTLVRIFNTL-DGTLL  294 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~-----~~~~~-~l~-~H-~~~V~~vaf--spdg~-~las~S-~Dgt~IrIWd~~-tg~~i  294 (321)
                      +.+++  +..+.-|..++..     ...+. .+. +| ...+..|++  .++|+ +|+..| .+++ ..|||.+ +.+.+
T Consensus       192 g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s-~~Vydr~~~~~~v  268 (355)
T 3amr_A          192 GRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS-YAIYDRQGKNKYV  268 (355)
T ss_dssp             TEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE-EEEEESSTTCCEE
T ss_pred             CeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE-EEEEECCCCCcEE
Confidence            34444  5665333333422     11222 221 22 347888988  45555 444444 4667 9999997 88899


Q ss_pred             EEEeCCCc
Q 020784          295 QEECCPSI  302 (321)
Q Consensus       295 ~~~~~g~~  302 (321)
                      ..|+.+..
T Consensus       269 g~f~Ig~~  276 (355)
T 3amr_A          269 ADFRITDG  276 (355)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCC
Confidence            99875544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.58  E-value=0.005  Score=61.32  Aligned_cols=194  Identities=10%  Similarity=0.020  Sum_probs=101.4

Q ss_pred             CeEEEEEc-CCCCEEEEEcC-C-----cEEEEEecCC-ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           87 TLLHISFN-QDHGCFAAGTD-H-----GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        87 ~V~~v~fs-~dg~~lasg~~-~-----gv~vw~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .+...+|| |||++||-+.+ .     .++++|++++ +.+.. .+  ......+.|+++++.++.+.....  -....|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~--~~~~~~~~WspDg~~l~y~~~d~~--~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV--SGTNGEIVWGPDHTSLFYVTKDET--LRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE--EEECSCCEECSSTTEEEEEEECTT--CCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc--cCceeeEEEecCCCEEEEEEECCC--CCCCEE
Confidence            57889999 99999985543 2     2778898887 52211 11  111234578889888877763210  012468


Q ss_pred             EEEeCCCCcE--EEEEee--CCceeEEEEeCCe--EEEEE-C---CEEEEEEcCCc--EE-EEEEeccCCCCceEEEeeC
Q 020784          159 MIWDDHQSRC--IGELSF--RSEVRSVKLRRDR--IIVVL-E---QKIFVYNFADL--KL-LHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       159 ~iWD~~~~~~--~~~~~~--~~~v~~v~~~~~~--~~~~~-~---~~I~iwd~~~~--~~-~~~l~~~~~~~~~~~~s~~  225 (321)
                      .++++.+++.  ...+..  ......+.|+++.  +++.. .   ..|.++|+.++  +. ++.+.... ........+.
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~  328 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMH  328 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEE
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeee
Confidence            8889877641  222222  2234567788764  44433 2   37888998764  22 12332211 1112222211


Q ss_pred             CCceEEEeecCCC--C--cEEEEeeCC-cceEE-eecccc--ceeEEEECCCCCEEEEEeCCCc-EEEEEEc
Q 020784          226 VGSLVLVCPGLQK--G--QVRVEHYAS-KRTKF-IMAHDS--RIACFALTQDGQLLATSSTKGT-LVRIFNT  288 (321)
Q Consensus       226 ~d~~~la~sGs~d--g--~V~i~d~~~-~~~~~-l~~H~~--~V~~vafspdg~~las~S~Dgt-~IrIWd~  288 (321)
                      .++.+++. ...+  +  .|..++... +.... +..|..  .+..+++. .+.++++...|+. .|.++|+
T Consensus       329 ~g~~l~~~-t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          329 GTSHLVIL-TNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TTTEEEEE-ECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eCCEEEEE-eCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            22334433 3333  3  444466543 23233 444444  35566665 3456667777775 2444564

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.56  E-value=0.029  Score=49.27  Aligned_cols=199  Identities=11%  Similarity=-0.001  Sum_probs=107.6

Q ss_pred             CeEEEEEcC-CCCEEEEEcCCcEEEEEecCCceeEEe-eee--cCCceEEEEEec-CCCeEEEEeCCCCC----------
Q 020784           87 TLLHISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRR-DFE--RGGGIGVVEMLF-RCNILALVGGGPDP----------  151 (321)
Q Consensus        87 ~V~~v~fs~-dg~~lasg~~~gv~vw~~~~~~~~~~~-~~~--~~~~v~~v~~~~-~~~~~~~~sg~~~~----------  151 (321)
                      ....+++.+ +|+++++....++..+|.++....... ...  .......+.+.+ ++++.+.-.+....          
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence            578999997 787766656677777776544321111 110  012245567777 67655443321000          


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEcCCcE--EEEEEeccCCCCceEEEeeC
Q 020784          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~--~~~~l~~~~~~~~~~~~s~~  225 (321)
                      ....+.|..||..+++.......-.....++++++  .++++.  .+.|..|++....  ....+.....   .-.+..+
T Consensus       161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d  237 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRN  237 (322)
T ss_dssp             TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---EEEEEEC
T ss_pred             cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---CCCeEEC
Confidence            00236788899877765433222234567888876  466664  3699999986421  1112221111   2334455


Q ss_pred             CCceEEEeecC---------CCCcEEEEeeCCcceEEeecc----ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          226 VGSLVLVCPGL---------QKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       226 ~d~~~la~sGs---------~dg~V~i~d~~~~~~~~l~~H----~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      +++.+.++...         ..+.|..++...+.+..+...    -..++++++ .+|+++++....+. |.++++..
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~-i~~~~~~~  313 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS-VGILVYDK  313 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE-EEEEEC--
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc-eEEEeccc
Confidence            56665553211         134566666554444444433    245777877 46777776666666 88888753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.51  E-value=0.013  Score=57.31  Aligned_cols=201  Identities=10%  Similarity=0.040  Sum_probs=103.8

Q ss_pred             EEEEEcCCCCEEEEEcC--CcEEEEEecCCceeEEeeeecCCceE-EEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           89 LHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIG-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      .++++..+|++++.|+.  ..+.+||..+.+......+ ...... .+....++.+++ .+|..+.....+.+.+||..+
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~-~~~R~~~s~~~~~dg~iyv-~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM-QVARGYQSSATMSDGRVFT-IGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC-SSCCSSCEEEECTTSCEEE-ECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCC-CccccccceEEecCCeEEE-EeCcccCCcccccceEeCCCC
Confidence            35778899999999985  3488999887654332222 111111 223334565444 444221111236799999988


Q ss_pred             CcEEEEE-----ee-----------CCceeEEEEeCCeEEE-EECCEEEEEEcCCcEEEEEEeccCC-------CCceEE
Q 020784          166 SRCIGEL-----SF-----------RSEVRSVKLRRDRIIV-VLEQKIFVYNFADLKLLHQIETIAN-------PKGLCA  221 (321)
Q Consensus       166 ~~~~~~~-----~~-----------~~~v~~v~~~~~~~~~-~~~~~I~iwd~~~~~~~~~l~~~~~-------~~~~~~  221 (321)
                      ++....-     ..           ...++.+......+.. .....+..||..+.+-.........       .....+
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a  403 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  403 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence            7754320     00           0011111111111111 1235788999876654333322111       111122


Q ss_pred             Ee-eCCCceEEEeecCCCC-----------cEEEEeeCCcceEEee---cccc-ceeEEEECCCCCEEEEEeCC------
Q 020784          222 VS-QGVGSLVLVCPGLQKG-----------QVRVEHYASKRTKFIM---AHDS-RIACFALTQDGQLLATSSTK------  279 (321)
Q Consensus       222 ~s-~~~d~~~la~sGs~dg-----------~V~i~d~~~~~~~~l~---~H~~-~V~~vafspdg~~las~S~D------  279 (321)
                      +. +..++.++++ |+.++           .|.+||..+..-..+.   .+.. .-.+.+..|+|++++.|+.+      
T Consensus       404 v~~~~~~~~i~v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          404 VMYDAVKGKILTF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEEETTTTEEEEE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             EeccCCCCeEEEE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence            21 1234577776 65332           4555666554433222   1222 23455677899999999865      


Q ss_pred             -----CcEEEEEEcCCCcE
Q 020784          280 -----GTLVRIFNTLDGTL  293 (321)
Q Consensus       280 -----gt~IrIWd~~tg~~  293 (321)
                           .+ +.+||..+.+-
T Consensus       483 ~~~~~~~-v~~ydp~t~~W  500 (656)
T 1k3i_A          483 DSTPVFT-PEIYVPEQDTF  500 (656)
T ss_dssp             CCSBCCC-CEEEEGGGTEE
T ss_pred             CCCcccc-eEEEcCCCCce
Confidence                 45 88999988653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=0.073  Score=52.96  Aligned_cols=195  Identities=9%  Similarity=0.001  Sum_probs=118.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEee--------------eecCCceEEEEEecCCCeEEEEeCCCC
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD--------------FERGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~--------------~~~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      ...|+++....+|.+.++...+|+.+++..+........              + ....|..+....+++ +.+++    
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l-~~~~v~~i~~D~~g~-lWigt----  330 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL-SNASARYIFQDSFNN-IWIGT----  330 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSB-SSSCEEEEEECSSCC-EEEEE----
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC-CCCeEEEEEEeCCCC-EEEEe----
Confidence            357999999999986654444899999877654321111              1 123455555555554 33444    


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEe----------eCCceeEEEEeC-CeEEEEE-CCEEEEEEcCCcEEEEEEec--cCCC
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELS----------FRSEVRSVKLRR-DRIIVVL-EQKIFVYNFADLKLLHQIET--IANP  216 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~----------~~~~v~~v~~~~-~~~~~~~-~~~I~iwd~~~~~~~~~l~~--~~~~  216 (321)
                         .++.|..++..++.......          ....|.++...+ ..+.+++ ++.|..||..+++..+ +..  ....
T Consensus       331 ---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~  406 (781)
T 3v9f_A          331 ---WGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIY-NKENRELLS  406 (781)
T ss_dssp             ---BSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEEC-C-----CCC
T ss_pred             ---cCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEE-ccCCCCCCC
Confidence               24668889887655332110          123588888776 4688888 5689999987544322 111  1112


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~---~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      ..+.++..+.++.+.+  |+.++-+..++..++....+.   .....|.++...++|.+.+. .. +. |.+||..+++.
T Consensus       407 ~~v~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~G-l~~~~~~~~~~  481 (781)
T 3v9f_A          407 NSVLCSLKDSEGNLWF--GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AG-VFVIDLASKKV  481 (781)
T ss_dssp             SBEEEEEECTTSCEEE--EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TE-EEEEESSSSSC
T ss_pred             cceEEEEECCCCCEEE--EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-Cc-eEEEeCCCCeE
Confidence            3456677776666665  566556777776666555443   23567999999999987664 44 56 78999888765


Q ss_pred             E
Q 020784          294 L  294 (321)
Q Consensus       294 i  294 (321)
                      .
T Consensus       482 ~  482 (781)
T 3v9f_A          482 I  482 (781)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.026  Score=56.18  Aligned_cols=197  Identities=9%  Similarity=0.023  Sum_probs=121.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEee--eecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD--FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      ...|.++...++|.+.+....+|+..|+..+.+......  . ....|..+....+++ +.+++       . +.|.++|
T Consensus       406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~g~-lwigt-------~-~Gl~~~~  475 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKN-ELLDVRVFYEDKNKK-IWIGT-------H-AGVFVID  475 (781)
T ss_dssp             CSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTT-CCCCEEEEEECTTSE-EEEEE-------T-TEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCC-CCCeEEEEEECCCCC-EEEEE-------C-CceEEEe
Confidence            357999999999987765445788888876654321110  0 123455555444443 44444       2 5689999


Q ss_pred             CCCCcEEEEEee------CCceeEEEEeCC-eEEEEEC-CEEEEEEcCCcEEEEEEeccC--CCCceEEEeeCCCceEEE
Q 020784          163 DHQSRCIGELSF------RSEVRSVKLRRD-RIIVVLE-QKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       163 ~~~~~~~~~~~~------~~~v~~v~~~~~-~~~~~~~-~~I~iwd~~~~~~~~~l~~~~--~~~~~~~~s~~~d~~~la  232 (321)
                      .++++.......      ...|.++....+ .+.+++. +.+..||..+++. ..+....  ....+.++..+.++.+.+
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred             CCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEE
Confidence            887665332221      235778877654 5778876 6788899876653 3443211  122456777777777665


Q ss_pred             eecCCCCcEEEEeeCCcceEEeecc----ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          233 CPGLQKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~~l~~H----~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                        |+.+|.|..++..++....+...    ...|.+++..++|.+.+++  ++. |..||..+++. ..+.
T Consensus       555 --~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~G-l~~~~~~~~~~-~~~~  618 (781)
T 3v9f_A          555 --ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--NTG-ISCYITSKKCF-YTYD  618 (781)
T ss_dssp             --EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--SSC-EEEEETTTTEE-EEEC
T ss_pred             --EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc--CCc-eEEEECCCCce-EEec
Confidence              34467656677666655555432    2468999999999987754  344 66788776653 4453

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.39  E-value=0.013  Score=56.67  Aligned_cols=144  Identities=15%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCC-----ceeE-EEEeCCeEEEEE-------CCEEEEEEcCCcEEEEEEeccCCCC---
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRS-----EVRS-VKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK---  217 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~-----~v~~-v~~~~~~~~~~~-------~~~I~iwd~~~~~~~~~l~~~~~~~---  217 (321)
                      .|+.|.-+|.++|+.+-......     .+.+ -.+..+.+++..       ++.|+.+|..+++++-++.......   
T Consensus       129 ~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~  208 (599)
T 1w6s_A          129 LDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL  208 (599)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             CCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence            46899999999999887765432     2221 223455666654       4799999999999988886542210   


Q ss_pred             -----------------------------------ceEEEeeCCCceEEEeecCC--------------CCcEEEEeeCC
Q 020784          218 -----------------------------------GLCAVSQGVGSLVLVCPGLQ--------------KGQVRVEHYAS  248 (321)
Q Consensus       218 -----------------------------------~~~~~s~~~d~~~la~sGs~--------------dg~V~i~d~~~  248 (321)
                                                         ...++.+. ++.+++.+|..              .+.|.-+|..+
T Consensus       209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~-~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T  287 (599)
T 1w6s_A          209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG-TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT  287 (599)
T ss_dssp             BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT
T ss_pred             cccccccccccccccccccccCCCcceecCCCccccceeEeCC-CCEEEEeCCCCccccCcccCCCccccceEEEEeCCC
Confidence                                               01223222 22333322221              13566678777


Q ss_pred             cceE-Eee--cccc-------ceeEEEEC-CCC---CEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          249 KRTK-FIM--AHDS-------RIACFALT-QDG---QLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       249 ~~~~-~l~--~H~~-------~V~~vafs-pdg---~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      +.+. .++  .|..       ...-+... .+|   ..++.++.+|. +.++|.++|+++...+.
T Consensus       288 G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~  351 (599)
T 1w6s_A          288 GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANKL  351 (599)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeecccc
Confidence            7654 222  2321       11112222 567   56788889998 99999999999987764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.25  E-value=0.079  Score=51.08  Aligned_cols=194  Identities=10%  Similarity=0.107  Sum_probs=111.3

Q ss_pred             CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCce--------EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI--------GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        96 dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v--------~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      +|..++++..+++.-+|..+++.+...........        ..+.+  ....+.+.+       .++.|.-+|.++|+
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t-------~dg~l~AlD~~TG~  138 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGT-------LDASVVALNKNTGK  138 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEE-------TTTEEEEEESSSCC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEe-------CCCEEEEEECCCCC
Confidence            55555555546677888888888777664101000        01111  234455554       46899999999999


Q ss_pred             EEEEEeeCC-----cee-EEEEeCC------eEEEEE-------CCEEEEEEcCCcEEEEEEeccCCC------------
Q 020784          168 CIGELSFRS-----EVR-SVKLRRD------RIIVVL-------EQKIFVYNFADLKLLHQIETIANP------------  216 (321)
Q Consensus       168 ~~~~~~~~~-----~v~-~v~~~~~------~~~~~~-------~~~I~iwd~~~~~~~~~l~~~~~~------------  216 (321)
                      .+-......     .+. +-.+..+      .+++..       ++.|+.+|..+++++-+.......            
T Consensus       139 ~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~  218 (582)
T 1flg_A          139 VVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVT  218 (582)
T ss_dssp             EEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEES
T ss_pred             EEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccc
Confidence            887765432     121 1112223      444443       468999999999988776432100            


Q ss_pred             -----------------------------CceEEEeeCCCceEEEeecC-----------C-------C----CcEEEEe
Q 020784          217 -----------------------------KGLCAVSQGVGSLVLVCPGL-----------Q-------K----GQVRVEH  245 (321)
Q Consensus       217 -----------------------------~~~~~~s~~~d~~~la~sGs-----------~-------d----g~V~i~d  245 (321)
                                                   -...++.+.. +.+++.+|.           .       |    +.|.-+|
T Consensus       219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD  297 (582)
T 1flg_A          219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVD  297 (582)
T ss_dssp             SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEEC
T ss_pred             cccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEe
Confidence                                         0112333222 233332331           1       2    4676788


Q ss_pred             eCCcceE-Eee--cccc-------ceeEEEEC-CCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          246 YASKRTK-FIM--AHDS-------RIACFALT-QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       246 ~~~~~~~-~l~--~H~~-------~V~~vafs-pdg~---~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      ..++.+. .++  .|..       ...-+... .+|+   .++.++.+|. +.++|..+|+++.++..+
T Consensus       298 ~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~~  365 (582)
T 1flg_A          298 PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPFV  365 (582)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEESS
T ss_pred             CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce-EEEEECCCCCEecccccc
Confidence            8777655 332  3421       11112222 5674   7888999999 999999999999887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.22  E-value=0.11  Score=46.59  Aligned_cols=160  Identities=11%  Similarity=0.115  Sum_probs=94.4

Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--------EEEEE-----CCEEEEEEcC-CcEEEEEEe-------cc
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--------IIVVL-----EQKIFVYNFA-DLKLLHQIE-------TI  213 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--------~~~~~-----~~~I~iwd~~-~~~~~~~l~-------~~  213 (321)
                      .+.+.++|+ +|+.+..+.. ..+..|.+-+..        +++++     .++|++|++. ....+..+.       ..
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~  126 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA  126 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred             CCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence            367999999 7888877754 456666654432        34443     3589999773 222244442       11


Q ss_pred             -CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeC---Cc-----ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          214 -ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA---SK-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       214 -~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~---~~-----~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                       ..+.++|.+.....+.+.++....+|.+..|++.   .+     .+.+|.- .+.+..|+..+...+|..+-+|.. |.
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G-Iw  204 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA-IW  204 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-EE
T ss_pred             CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce-EE
Confidence             3445565554332344333346777988888763   21     1234432 457888999988778888888876 65


Q ss_pred             EEEcC-----CCcEEEEEeCCC---cceeEEE--eecCc-eEEEe
Q 020784          285 IFNTL-----DGTLLQEECCPS---ISAQSGL--WLSSA-WLRVL  318 (321)
Q Consensus       285 IWd~~-----tg~~i~~~~~g~---~~~~~~~--s~d~~-~la~~  318 (321)
                      .++.+     +++++..+..++   +...+.+  ..+++ ||.++
T Consensus       205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS  249 (355)
T 3amr_A          205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS  249 (355)
T ss_dssp             EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred             EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence            56654     466776654342   2334444  35555 76554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.13  Score=47.41  Aligned_cols=201  Identities=9%  Similarity=0.060  Sum_probs=105.3

Q ss_pred             CeEEEEEcC-CCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~-dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .-..++|+| ++..|..... +.|+.+|.+.........  ....-..+++..+++.+.++..+..  .....+.+.+ .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~--~~~~~v~~~~-~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNN--NDRPNNYILT-R  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSC--TTSEEEEEEE-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCC--cccceEEEEe-C
Confidence            456899997 3444444443 557778877655433222  1345667888888886666653211  0011233333 3


Q ss_pred             CCcEE--EEEeeCCceeEEEEeC-C-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          165 QSRCI--GELSFRSEVRSVKLRR-D-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       165 ~~~~~--~~~~~~~~v~~v~~~~-~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      .+...  ..+.....+..+++++ + .++++.  .+.|..|+...+.....+..... ..-..+..++++..|.++....
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEEEEETTT
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEEEEECCC
Confidence            33221  2333234567788887 3 455553  36999999987664322222111 1122334445555333335666


Q ss_pred             CcEEEEeeCC--cce---EEeecc---------------cccee-EEEEC--------CCCCEEEEEeCCCcEEEEEEcC
Q 020784          239 GQVRVEHYAS--KRT---KFIMAH---------------DSRIA-CFALT--------QDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       239 g~V~i~d~~~--~~~---~~l~~H---------------~~~V~-~vafs--------pdg~~las~S~Dgt~IrIWd~~  289 (321)
                      +.|..++...  +.+   .++.+.               -.... .++..        ++|.+.++=...+. |+.++ .
T Consensus       292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-~  369 (430)
T 3tc9_A          292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-P  369 (430)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-T
T ss_pred             CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-C
Confidence            7888766542  211   122211               11233 56653        45777766555566 99998 5


Q ss_pred             CCcEEE
Q 020784          290 DGTLLQ  295 (321)
Q Consensus       290 tg~~i~  295 (321)
                      +|+...
T Consensus       370 ~G~v~~  375 (430)
T 3tc9_A          370 QGRVTT  375 (430)
T ss_dssp             TSEEEE
T ss_pred             CCcEEE
Confidence            675543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.10  E-value=0.11  Score=44.46  Aligned_cols=191  Identities=8%  Similarity=0.072  Sum_probs=107.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Cc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+..++|+|++..|.+..+ ++ |...|.+ ++......+........+++..++ .++++..+      ++.+.++++
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~------~~~l~~~~v   98 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDER------DYAIYVISL   98 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETT------TTEEEEEEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECC------CCcEEEEEc
Confidence            36999999998776665444 44 4455555 555444444112466677776555 45555533      477888887


Q ss_pred             CCCc---EEEEEeeC-------CceeEEEEeCC--eEEEEEC-CEEEEEEcC---CcEEEEEEec-------cCCCCceE
Q 020784          164 HQSR---CIGELSFR-------SEVRSVKLRRD--RIIVVLE-QKIFVYNFA---DLKLLHQIET-------IANPKGLC  220 (321)
Q Consensus       164 ~~~~---~~~~~~~~-------~~v~~v~~~~~--~~~~~~~-~~I~iwd~~---~~~~~~~l~~-------~~~~~~~~  220 (321)
                      ....   .+....+.       ...-.+++++.  +++++.+ +...+|.+.   ..+.++.+..       .......+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            6443   22333321       13467888764  6777754 333444442   1111222211       11223456


Q ss_pred             EEeeCCCceEEEeecCCCCcEEEEeeCCcceE--Eee-ccc------cceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIM-AHD------SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~--~l~-~H~------~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      ++.+.. +.+++. ...++.+.+.|.+.+.+.  .|. +..      .....|+|.++|++.++ |+.+- +.+|.-
T Consensus       179 ~~dp~t-g~lliL-S~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~-~y~f~~  251 (255)
T 3qqz_A          179 EFNQQK-NTLLVL-SHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR-FYRFTP  251 (255)
T ss_dssp             EEETTT-TEEEEE-ETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE-EEEEEC
T ss_pred             EEcCCC-CeEEEE-ECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce-EEEEEe
Confidence            666653 345554 455567777887766443  333 221      25789999999997765 77765 666653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.04  E-value=0.18  Score=45.78  Aligned_cols=204  Identities=8%  Similarity=-0.054  Sum_probs=112.8

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      .....++|++.+..|. +-.. +.|..++.+.......... .......+++.+....+.++..+      .+.|.+.++
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~lY~~d~~------~~~I~~~~~  188 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSG------TSRIEVANL  188 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-SCSCCCCEEEETTTTEEEEEETT------TTEEEECBT
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-CCCCccEEEEEeCCCeEEEEcCC------CCeEEEEeC
Confidence            3578899997655554 4333 4466777665433222111 01122345666655555555432      467888887


Q ss_pred             CCCcEEEEEeeC-CceeEEEEeC--CeEEEEE--C-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          164 HQSRCIGELSFR-SEVRSVKLRR--DRIIVVL--E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       164 ~~~~~~~~~~~~-~~v~~v~~~~--~~~~~~~--~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +.......+... ..+..+.+++  ..++.+.  . ..|..+++........+......-.-++++++.+ .+.. +-..
T Consensus       189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~-~lY~-aD~~  266 (386)
T 3v65_B          189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYW-VDAK  266 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT-EEEE-EETT
T ss_pred             CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC-EEEE-EECC
Confidence            654332222222 3577888885  3455553  2 5788888754322222222211112345554433 3333 3566


Q ss_pred             CCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       238 dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      .+.|...++...... .+.........|++ ..+.++.+-...+. |..+|..+|+.+..+..+
T Consensus       267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~~~  328 (386)
T 3v65_B          267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIRNK  328 (386)
T ss_dssp             TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEECS
T ss_pred             CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe-EEEEECCCCcceEEEccC
Confidence            678888887654433 33334556788998 34566666666666 888998888877777544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.92  E-value=0.18  Score=43.85  Aligned_cols=183  Identities=10%  Similarity=-0.083  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Cc--EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           86 PTLLHISFNQDHGCFAAGTD-HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~-~g--v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .....++|++||+++++... ++  +..++..+++...............++.. .+..+.++..      ..+.|.++|
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~------~~g~i~~~d  144 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADS------YRGAIWLID  144 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEET------TTTEEEEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEEC------CCCeEEEEe
Confidence            36789999999997666543 44  44455555554322221001111222222 2333333331      247788888


Q ss_pred             CCCCcE-EEEEe-------e-C--CceeEEEEeCCeEEEEE--CCEEEEEEcCC-cEE--EEEEeccCCCCceEEEeeCC
Q 020784          163 DHQSRC-IGELS-------F-R--SEVRSVKLRRDRIIVVL--EQKIFVYNFAD-LKL--LHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       163 ~~~~~~-~~~~~-------~-~--~~v~~v~~~~~~~~~~~--~~~I~iwd~~~-~~~--~~~l~~~~~~~~~~~~s~~~  226 (321)
                      ...++. +....       . .  .....+....+.++++.  .+.|..|++.. ++.  ...+.....+. -+++.  +
T Consensus       145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~-gi~vd--~  221 (306)
T 2p4o_A          145 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNID-DFAFD--V  221 (306)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCS-SEEEB--T
T ss_pred             CCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCC-CeEEC--C
Confidence            765431 11110       0 0  12344544555677775  35999999864 321  12222212222 23444  4


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcceEE---eeccccceeEEEEC---CCCCEEEEEeCCC
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALT---QDGQLLATSSTKG  280 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~~~---l~~H~~~V~~vafs---pdg~~las~S~Dg  280 (321)
                      ++.+.++ ....+.|.+++.. +.+..   +...-..+++++|.   |++..|..++..+
T Consensus       222 dG~l~va-~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          222 EGNLYGA-THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TCCEEEE-CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCEEEE-eCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            5566553 4556788888765 33322   22223568999998   8876554444333

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.84  E-value=0.26  Score=44.62  Aligned_cols=192  Identities=7%  Similarity=-0.020  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc
Q 020784           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~  167 (321)
                      -.|.+..+ ..+|+.+....|+.++++.........  .......+++.+..+.+..+..      ..+.|..++.+.+.
T Consensus        79 ~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~g~~  149 (386)
T 3v65_B           79 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDV------TLDRILRANLNGSN  149 (386)
T ss_dssp             SCEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCC
T ss_pred             CeECCccc-cceeEeecCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeC------CCCcEEEEecCCCC
Confidence            44555555 345556666677777776554332222  1344666777776666666653      34789999987665


Q ss_pred             EEEEEeeC-CceeEEEEe--CCeEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC-CcE
Q 020784          168 CIGELSFR-SEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQV  241 (321)
Q Consensus       168 ~~~~~~~~-~~v~~v~~~--~~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d-g~V  241 (321)
                      ....+... ..+..+++.  ...++++..  +.|.+.++........+......-.-+++.+.. +.+.. +.... +.|
T Consensus       150 ~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~-g~ly~-td~~~~~~I  227 (386)
T 3v65_B          150 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME-GTIYW-TDWGNTPRI  227 (386)
T ss_dssp             EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTT-TEEEE-EECSSSCEE
T ss_pred             cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCC-CeEEE-eccCCCCEE
Confidence            43322221 244556665  456666643  588888876433222222211111223444332 33333 33444 677


Q ss_pred             EEEeeCCcceEEe-eccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCC
Q 020784          242 RVEHYASKRTKFI-MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       242 ~i~d~~~~~~~~l-~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg  291 (321)
                      ...++.......+ ...-...+.|+|+|++. +.++=+..+. |..+|+...
T Consensus       228 ~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~  278 (386)
T 3v65_B          228 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGS  278 (386)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSC
T ss_pred             EEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCC
Confidence            7777655444433 23344589999997655 4444455556 999998643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.80  E-value=0.38  Score=50.18  Aligned_cols=177  Identities=8%  Similarity=0.060  Sum_probs=104.2

Q ss_pred             EEEEEecCCceeEEeeeecCCceEEEE-EecCC---CeEEEEeCC---CCCCCCCCcEEEEeCCCCc--EEEEEeeCCce
Q 020784          108 FRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC---NILALVGGG---PDPQYPLNKVMIWDDHQSR--CIGELSFRSEV  178 (321)
Q Consensus       108 v~vw~~~~~~~~~~~~~~~~~~v~~v~-~~~~~---~~~~~~sg~---~~~~~~d~~v~iWD~~~~~--~~~~~~~~~~v  178 (321)
                      +++.|-.+.+.+...++..+..+.+++ +.+..   ..++++++-   .+.....|.|.++++..++  .+......+.|
T Consensus       809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v  888 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV  888 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred             EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence            445565555555555552222333333 23322   445544421   1112245889999986544  34445567789


Q ss_pred             eEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEec-cCCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeCCcceEEee
Q 020784          179 RSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIM  255 (321)
Q Consensus       179 ~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~l~  255 (321)
                      ++++--..+++++.+++|++|++...+.++ ... ....+....+...+  .++++ |+.-..|.+  |+.....+..+.
T Consensus       889 ~al~~~~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~--~~I~v-gD~~~Sv~~~~y~~~~~~L~~~a  964 (1158)
T 3ei3_A          889 YSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKG--DFILV-GDLMRSVLLLAYKPMEGNFEEIA  964 (1158)
T ss_dssp             EEEEEETTEEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEET--TEEEE-EESSBCEEEEEEETTTTEEEEEE
T ss_pred             EEEeeeCCEEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccC--CEEEE-EEhhheEEEEEEEcCCCeEEEEE
Confidence            999876778889999999999997655444 221 11112233443333  34443 777777777  554445555444


Q ss_pred             --ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          256 --AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       256 --~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                        .+...|+++.|--++ .++.+-.+|. |.|.....
T Consensus       965 ~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~vl~~~~  999 (1158)
T 3ei3_A          965 RDFNPNWMSAVEILDDD-NFLGAENAFN-LFVCQKDS  999 (1158)
T ss_dssp             ECCSCBCEEEEEEEETT-EEEEEETTSE-EEEEEECT
T ss_pred             eecccccEEEEEEEccC-cEEEEcCCCc-EEEEecCC
Confidence              356678999986554 5666888888 88887654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.73  E-value=0.36  Score=44.57  Aligned_cols=199  Identities=10%  Similarity=0.037  Sum_probs=105.7

Q ss_pred             CeEEEEEcCC---CCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           87 TLLHISFNQD---HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        87 ~V~~v~fs~d---g~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      .-..++|+++   |.++++-..+.|+.++.+++.......  .......+++.++++ +.++..+..  .....+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~-lyVad~~~~--~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQSS--DTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCC-EEEEECCSC--TTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCC-EEEEcCCCC--cccceEEEEEC
Confidence            3458999985   554444333567788876665433222  134467788888888 444432110  00122333333


Q ss_pred             CCCcE-EEEEeeCCceeEEEEeC-C-eEEEEE--CCEEEEEEcCCcEEEEEEe-ccCCCC-ceEEEeeCCCceEEEeecC
Q 020784          164 HQSRC-IGELSFRSEVRSVKLRR-D-RIIVVL--EQKIFVYNFADLKLLHQIE-TIANPK-GLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       164 ~~~~~-~~~~~~~~~v~~v~~~~-~-~~~~~~--~~~I~iwd~~~~~~~~~l~-~~~~~~-~~~~~s~~~d~~~la~sGs  236 (321)
                      ..+.. ...+..-.....+++++ + .++++.  .+.|+.+|..+++....+. ...... .-+++++  ++..|.++-.
T Consensus       215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp--dG~~LYvad~  292 (433)
T 4hw6_A          215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP--TGDWAYIIYN  292 (433)
T ss_dssp             GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT--TSSEEEEEET
T ss_pred             CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC--CCCEEEEEeC
Confidence            22211 11222223456677776 3 455554  3589999988676533332 221111 1245544  4453332356


Q ss_pred             CCCcEEEEeeC--Ccce---EEeecc---------------ccceeEEEE---------CCCCCEEEEEeCCCcEEEEEE
Q 020784          237 QKGQVRVEHYA--SKRT---KFIMAH---------------DSRIACFAL---------TQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       237 ~dg~V~i~d~~--~~~~---~~l~~H---------------~~~V~~vaf---------spdg~~las~S~Dgt~IrIWd  287 (321)
                      ..+.|+.+++.  ++.+   .++.+.               -.....++|         ..+|.+.++-...+. |++++
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~  371 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLT  371 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEEC
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEEC
Confidence            66788876654  2221   222221               124678999         788888777666666 99998


Q ss_pred             cCCCcEE
Q 020784          288 TLDGTLL  294 (321)
Q Consensus       288 ~~tg~~i  294 (321)
                      . +|+..
T Consensus       372 ~-~G~v~  377 (433)
T 4hw6_A          372 P-EGRVT  377 (433)
T ss_dssp             T-TSEEE
T ss_pred             C-CCCEE
Confidence            4 67543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.72  E-value=0.15  Score=49.74  Aligned_cols=194  Identities=9%  Similarity=0.000  Sum_probs=97.8

Q ss_pred             EEEEcC-CCCEEEEEcCC------------cEEEEEecCCceeEEeeee--cCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           90 HISFNQ-DHGCFAAGTDH------------GFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        90 ~v~fs~-dg~~lasg~~~------------gv~vw~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      ++++.+ +|++++.|+.+            .+.+||..+.+........  +......+.+..++.++ +.+|.     .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~ly-v~GG~-----~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV-VTGGN-----D  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEE-EECSS-----S
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEE-EeCCC-----C
Confidence            567777 89988887641            2568887776532211110  11112223444555544 44443     2


Q ss_pred             CCcEEEEeCCCCcEEEEEeeCC--ceeEEEEe-CCeEEEEEC--------CEEEEEEcCCcEEEEEEec-----cCCCCc
Q 020784          155 LNKVMIWDDHQSRCIGELSFRS--EVRSVKLR-RDRIIVVLE--------QKIFVYNFADLKLLHQIET-----IANPKG  218 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~-~~~~~~~~~--------~~I~iwd~~~~~~~~~l~~-----~~~~~~  218 (321)
                      ++.+.+||..+++....-....  .-.++... ..++++..+        +.+.+||..+.+- ..+..     ......
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W-~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTADK  342 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCCCT
T ss_pred             CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc-eeCCCccccccccccc
Confidence            4589999998876554322221  11233443 445555433        4799999987653 22211     000000


Q ss_pred             eEEEeeCCCceEEEeecCCCC---------cEEEEeeCCcc-eEEeeccc---------cceeEEEEC-CCCCEEEEEeC
Q 020784          219 LCAVSQGVGSLVLVCPGLQKG---------QVRVEHYASKR-TKFIMAHD---------SRIACFALT-QDGQLLATSST  278 (321)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg---------~V~i~d~~~~~-~~~l~~H~---------~~V~~vafs-pdg~~las~S~  278 (321)
                      ...+  ..++.++++ |..+|         .+.+||..... ......+.         ..-.++.|. .++++++.|+.
T Consensus       343 ~~~~--~~~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~  419 (656)
T 1k3i_A          343 QGLY--RSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  419 (656)
T ss_dssp             TGGG--TTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             ccee--ecCCceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence            0011  112233333 43333         45667766543 12221111         123455554 47888888885


Q ss_pred             CC-----------cEEEEEEcCCCcEE
Q 020784          279 KG-----------TLVRIFNTLDGTLL  294 (321)
Q Consensus       279 Dg-----------t~IrIWd~~tg~~i  294 (321)
                      ++           . |.+||..+.+-.
T Consensus       420 ~~~~~~~~~~~~~~-v~~yd~~~~~W~  445 (656)
T 1k3i_A          420 PDYQDSDATTNAHI-ITLGEPGTSPNT  445 (656)
T ss_dssp             SSSSSSBCCCCEEE-EECCSTTSCCEE
T ss_pred             CCCCCCCcCCcceE-EEcCCCCCCCee
Confidence            43           4 888898887643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.72  E-value=0.3  Score=43.56  Aligned_cols=202  Identities=8%  Similarity=-0.050  Sum_probs=111.5

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      ....++|++.+..|. +-.. +.|..++.+.......... .......+++.+....+.++..      ..+.|.+.+.+
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~ly~~d~------~~~~I~~~~~d  146 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDS------GTSRIEVANLD  146 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-CCCCccEEEEecCCCeEEEEcC------CCCeEEEEcCC
Confidence            578899997655555 4333 4466777665443222111 0122345566665555555543      24789999887


Q ss_pred             CCcEEEEEeeC-CceeEEEEeC--CeEEEEE--C-CEEEEEEcCCcEEEEEE-eccCCCCceEEEeeCCCceEEEeecCC
Q 020784          165 QSRCIGELSFR-SEVRSVKLRR--DRIIVVL--E-QKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~--~~~~~~~--~-~~I~iwd~~~~~~~~~l-~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      .......+... ..+..+++++  ..++.+.  . +.|..+++..... ..+ ......-.-+++.++.+ .+.. +-..
T Consensus       147 G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~-~lY~-aD~~  223 (349)
T 3v64_C          147 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGR-RMYW-VDAK  223 (349)
T ss_dssp             SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTT-EEEE-EETT
T ss_pred             CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCC-EEEE-EECC
Confidence            54332222222 3577888885  3455553  2 5788887754322 222 11111112244444332 3333 3556


Q ss_pred             CCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       238 dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      .+.|...++...... .+.........|++. ++.++.+-...+. |..+|..+|+.+..+..+
T Consensus       224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~-V~~~~~~~G~~~~~i~~~  285 (349)
T 3v64_C          224 HHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS-INSANKFTGKNQEIIRNK  285 (349)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCSCEEEECS
T ss_pred             CCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe-EEEEEccCCCccEEeccC
Confidence            678888887654433 333345567888884 4566666655666 888887788877666543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.67  E-value=0.12  Score=47.69  Aligned_cols=137  Identities=8%  Similarity=-0.007  Sum_probs=81.1

Q ss_pred             ceeEEEEeC---CeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC----cEEEEeeCC
Q 020784          177 EVRSVKLRR---DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYAS  248 (321)
Q Consensus       177 ~v~~v~~~~---~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg----~V~i~d~~~  248 (321)
                      .+..+++++   ..++++.. +.|+.+|+..++......   .....+.+..++++..|.++...++    .+.+.+...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            466788885   34566654 689999998766543333   2223455566666663333343222    222233222


Q ss_pred             cce--EEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC--CcceeEEEeecCceEEEe
Q 020784          249 KRT--KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEECCP--SISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       249 ~~~--~~l~~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g--~~~~~~~~s~d~~~la~~  318 (321)
                      ...  ..+. .......++++| +|.++++-..++. |+.|+..+++.......+  .....++++++|++|.++
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence            111  2232 234578899999 7887777666777 999999877653323332  335567888999977665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.60  E-value=0.36  Score=43.02  Aligned_cols=194  Identities=7%  Similarity=-0.019  Sum_probs=107.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ...+|.+..+++ +|..+....|+..+++.........  .......+++.+..+.+..+..      ..+.|..++...
T Consensus        34 d~~~C~~~~~~~-~ll~~~~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~------~~~~I~r~~~~g  104 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDV------TLDRILRANLNG  104 (349)
T ss_dssp             TSSCEEESSSCC-EEEEECBSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTS
T ss_pred             CCCcccccccCc-eeEeecccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEec------cCCceEEEecCC
Confidence            345676666644 5555555667766665543322222  1234566777776677766652      347899999876


Q ss_pred             CcEEEEEeeC-CceeEEEEe--CCeEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC-C
Q 020784          166 SRCIGELSFR-SEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-G  239 (321)
Q Consensus       166 ~~~~~~~~~~-~~v~~v~~~--~~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d-g  239 (321)
                      +.....+... ..+..+++.  ...++.+..  +.|.+.++........+......-.-+++.+. ++.++. +.... +
T Consensus       105 ~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~-~g~ly~-td~~~~~  182 (349)
T 3v64_C          105 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM-EGTIYW-TDWGNTP  182 (349)
T ss_dssp             CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETT-TTEEEE-EECSSSC
T ss_pred             CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecC-cCeEEE-eccCCCC
Confidence            6533322221 245566665  456666643  58999998644322222221111122344432 233333 34444 6


Q ss_pred             cEEEEeeCCcceEEee-ccccceeEEEECCCCCE-EEEEeCCCcEEEEEEcCCC
Q 020784          240 QVRVEHYASKRTKFIM-AHDSRIACFALTQDGQL-LATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l~-~H~~~V~~vafspdg~~-las~S~Dgt~IrIWd~~tg  291 (321)
                      .|...++.......+. ..-...+.|+|+|++.. ..+-+..+. |..+|+...
T Consensus       183 ~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~  235 (349)
T 3v64_C          183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGS  235 (349)
T ss_dssp             EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred             EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCC
Confidence            7777776554444432 23445799999986554 444454556 999998643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.42  E-value=0.43  Score=41.78  Aligned_cols=202  Identities=8%  Similarity=-0.094  Sum_probs=111.8

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CcEEEEEecC----CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDP----FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg-~~-~gv~vw~~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ....++|++++..|... .. +.|..++.+.    ......... .-.....+++.+.+..+.++..      ..+.|.+
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavd~~~~~ly~~d~------~~~~I~~  103 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVSV  103 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEEE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCCCcCEEEEeecCCeEEEEEC------CCCEEEE
Confidence            57899999876555544 33 4466777664    111111110 0123345666655555555442      2478999


Q ss_pred             EeCCCCcEEEEEee-CCceeEEEEeC--CeEEEEEC---CEEEEEEcCCcEEEEEEec-cCCCCceEEEeeCCCceEEEe
Q 020784          161 WDDHQSRCIGELSF-RSEVRSVKLRR--DRIIVVLE---QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~--~~~~~~~~---~~I~iwd~~~~~~~~~l~~-~~~~~~~~~~s~~~d~~~la~  233 (321)
                      .|.........+.. -..+..+++++  ..++.+..   +.|..+++... ....+.. ....-.-+++.++. +.+.. 
T Consensus       104 ~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~-~~lY~-  180 (316)
T 1ijq_A          104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLS-GRLYW-  180 (316)
T ss_dssp             EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTT-TEEEE-
T ss_pred             EeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccC-CEEEE-
Confidence            99875443333332 23677888875  34555532   47888887532 2233322 11111234444433 23333 


Q ss_pred             ecCCCCcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      +-...+.|...++......++..   .-.....|++. .+.++.+-...+. |..+|..+|+.+..+..+
T Consensus       181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~-V~~~~~~~g~~~~~i~~~  248 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAEN  248 (316)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCCCEEEECS
T ss_pred             EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe-EEEEeCCCCcceEEEecC
Confidence            35666788888876544443322   23457888886 4666666665666 999998888877777544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.36  E-value=0.51  Score=41.91  Aligned_cols=151  Identities=8%  Similarity=0.080  Sum_probs=92.7

Q ss_pred             EEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC---------ceeEEEE---eCC-eEEEEE-------
Q 020784          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS---------EVRSVKL---RRD-RIIVVL-------  192 (321)
Q Consensus       133 v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~---------~v~~v~~---~~~-~~~~~~-------  192 (321)
                      ..|......+.+++-      ..++|..||...+..... .+..         .+..+.+   .++ +++++.       
T Consensus        18 ~~wd~~~g~~~vs~l------~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           18 TIYDRTRQVFYQSNL------YKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             EEEETTTTEEEEEET------TTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCcCCCCEEEEEec------cCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            455554555655552      358999999876544332 3321         3578888   444 565542       


Q ss_pred             --------CCEEEEEEcC---CcEEEEEEecc----C-------CCCceEEEeeCCCceEEEeecCCC-CcEEEEeeCCc
Q 020784          193 --------EQKIFVYNFA---DLKLLHQIETI----A-------NPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASK  249 (321)
Q Consensus       193 --------~~~I~iwd~~---~~~~~~~l~~~----~-------~~~~~~~~s~~~d~~~la~sGs~d-g~V~i~d~~~~  249 (321)
                              +..|..||+.   +++.+......    .       .......+..+++++..+. ++.. +.|...+...+
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALGMPAIARVSADGK  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEESSCEEEEECTTSC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe-CCCCCCeEEEEeCCCC
Confidence                    2579999998   77776665421    0       1223667777777777663 5555 55544444333


Q ss_pred             ceEEee------ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCc
Q 020784          250 RTKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (321)
Q Consensus       250 ~~~~l~------~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~  292 (321)
                      .+..+.      ...-..+.|+++|+|.+|+....+|. +..||+.+-.
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~pv  217 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKPY  217 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCCc
Confidence            333221      11223679999999998888766888 8889988543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.30  E-value=1  Score=44.91  Aligned_cols=184  Identities=7%  Similarity=-0.078  Sum_probs=99.2

Q ss_pred             EEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc----EEEEEe-
Q 020784           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-  173 (321)
Q Consensus        99 ~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~----~~~~~~-  173 (321)
                      +|+......|+..+++.........  .......+++....+.+.++..      ..+.|+.+++....    ....+. 
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~------~~~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECS
T ss_pred             ccccccccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeec------cceeEEEEeccCCCCCcceeEEEec
Confidence            5555666677777776554322222  1345566677776666666653      24778888886531    122222 


Q ss_pred             eCCceeEEEEe--CCeEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC-CCcEEEEeeCC
Q 020784          174 FRSEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYAS  248 (321)
Q Consensus       174 ~~~~v~~v~~~--~~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~-dg~V~i~d~~~  248 (321)
                      .-..+..|++.  ...++++-.  +.|.+.++........+......-.-+++.+.. +.++. +-.. .+.|...++..
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~-g~LYw-tD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYW-TDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEE-EECSSSCEEEEEETTS
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC-CCEEE-ecCCCCCeEEEEecCC
Confidence            11245566665  456777643  599999987544322222221111234444432 33333 2322 25677777765


Q ss_pred             cceEEee-ccccceeEEEECCCCCEEEEE-eCCCcEEEEEEcCCCcE
Q 020784          249 KRTKFIM-AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTL  293 (321)
Q Consensus       249 ~~~~~l~-~H~~~V~~vafspdg~~las~-S~Dgt~IrIWd~~tg~~  293 (321)
                      ....++. ..-...+.|++++.+..|.-+ ...+. |..+++.....
T Consensus       547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~  592 (791)
T 3m0c_C          547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNR  592 (791)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC
T ss_pred             CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCce
Confidence            5544443 334678999999765544444 44555 99999865443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.27  E-value=0.65  Score=42.26  Aligned_cols=205  Identities=8%  Similarity=-0.071  Sum_probs=114.4

Q ss_pred             CCeEEEEEcCCCCEEEEEc-C-CcEEEEEecCC----ceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           86 PTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~-~-~gv~vw~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+..++|++.+..|.-.. . +.|..++++..    ........ .......+++.+....+.++..      ..+.|.
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavD~~~~~lY~~d~------~~~~I~  184 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVS  184 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-SCSCEEEEEEETTTTEEEEEET------TTTEEE
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-CCCCcccEEEEecCCceEEEEC------CCCeEE
Confidence            4688999998665555443 3 44666676542    11111110 1234456677765555555543      247899


Q ss_pred             EEeCCCCcEEEEEee-CCceeEEEEeC--CeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSF-RSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~-~~~v~~v~~~~--~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +.|++.......+.. -..+..+++++  ..++.+.   ...|...++........+......-.-+++.+..+ .+.. 
T Consensus       185 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~-~lY~-  262 (400)
T 3p5b_L          185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYW-  262 (400)
T ss_dssp             EECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT-EEEE-
T ss_pred             EEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC-EEEE-
Confidence            999876554333332 23578888876  3455553   24788888764332222222111112344444332 3333 


Q ss_pred             ecCCCCcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      +-...+.|...++......++..   .-.....|++. .+.++.+-...+. |..+|..+|+.+.++..+.
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~~~  331 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAENL  331 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEEEECSC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEEEecCC
Confidence            35556788888876554443322   23456788884 3456666766677 9999988998877776443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.08  E-value=0.66  Score=40.59  Aligned_cols=181  Identities=7%  Similarity=-0.078  Sum_probs=100.1

Q ss_pred             EEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC----CcEEEEEee
Q 020784           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELSF  174 (321)
Q Consensus        99 ~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~----~~~~~~~~~  174 (321)
                      +|+.+..+.|+..+++.........  .......+++.+..+.+..+..      ..+.|..+|...    ......+..
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~------~~~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEEC------CCCcEEEEECCCCCCCcccEEEEeC
Confidence            4566666778888887765433322  1344566677776666666653      347899999875    221212221


Q ss_pred             C-CceeEEEEe--CCeEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC-CcEEEEeeCC
Q 020784          175 R-SEVRSVKLR--RDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS  248 (321)
Q Consensus       175 ~-~~v~~v~~~--~~~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d-g~V~i~d~~~  248 (321)
                      . ..+..+++.  ...++++.  .+.|.++++........+......-.-+++.+. ++.++. +.... +.|...++..
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~-~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYW-TDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEE-EECSSSCEEEEEETTS
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEE-EccCCCCeEEEEcCCC
Confidence            1 345677765  45666664  358999998654332222221111122334332 334443 23333 6777766654


Q ss_pred             cceEEee-ccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCC
Q 020784          249 KRTKFIM-AHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       249 ~~~~~l~-~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~t  290 (321)
                      .....+. ..-...+.|++++++..| .+-+..+. |..+|+..
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg  195 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG  195 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCC
Confidence            4444332 234568899999876554 44445556 99999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.03  E-value=0.036  Score=54.73  Aligned_cols=202  Identities=9%  Similarity=-0.059  Sum_probs=106.7

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CcEEEEEecC----CceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDP----FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~--~gv~vw~~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+..++|++++..|.....  +.|+.++++.    ......... .......+++.+....+.++..      ..+.|.+
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~~P~glavD~~~g~LY~tD~------~~~~I~v  479 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVSV  479 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC--CCCEECCCSSSBCEECCT------TTSCEEE
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCCCcceEEEEeeCCcEEEEec------cCCeEEE
Confidence            4567899987766665543  4477777764    111111100 0011223444444444444332      2478999


Q ss_pred             EeCCCCcEEEEEeeC-CceeEEEEeC--CeEEEEE--C-CEEEEEEcCCcEEEEEEe-ccCCCCceEEEeeCCCceEEEe
Q 020784          161 WDDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVL--E-QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~--~~~~~~~--~-~~I~iwd~~~~~~~~~l~-~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      .|+........+... ..+..+++.+  ..++++.  . +.|..+++... ....+. .....-.-+++.++....+++ 
T Consensus       480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~a-  557 (699)
T 1n7d_A          480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWV-  557 (699)
T ss_dssp             EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEE-
T ss_pred             EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEE-
Confidence            998755443333222 3466777765  3344442  1 46777766432 222222 111112235555544333333 


Q ss_pred             ecCCCCcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                       -...+.|...++......++..   .......|++..+ .++++....+. |..+|..+|+.+..+..+
T Consensus       558 -D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i~~~  624 (699)
T 1n7d_A          558 -DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLLAEN  624 (699)
T ss_dssp             -ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECCCTT
T ss_pred             -ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEeecC
Confidence             4556788888876544443322   2344567777654 45566665677 999999999988877543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.95  E-value=0.028  Score=55.93  Aligned_cols=99  Identities=9%  Similarity=-0.161  Sum_probs=60.5

Q ss_pred             EEEeeC-CCceEEEeecCCCC----cEEEEeeCCc-ceEEeeccccceeEEEECCCCCEEEEEeCCC----cEEEEEEcC
Q 020784          220 CAVSQG-VGSLVLVCPGLQKG----QVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKG----TLVRIFNTL  289 (321)
Q Consensus       220 ~~~s~~-~d~~~la~sGs~dg----~V~i~d~~~~-~~~~l~~H~~~V~~vafspdg~~las~S~Dg----t~IrIWd~~  289 (321)
                      ..+... +|+..||++-+.+|    .|+++|+.++ .... ..-......++|+|||+.|+-.+.|.    ..|.++++.
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            344455 67788887544333    4888998876 5211 00112246789999999888777663    238888998


Q ss_pred             CCcE--EEEEeCCCc--ceeEEEeecCceEEEee
Q 020784          290 DGTL--LQEECCPSI--SAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       290 tg~~--i~~~~~g~~--~~~~~~s~d~~~la~~~  319 (321)
                      +++.  ...+.....  .....+|+||++|++..
T Consensus       256 t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             CCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence            8741  222322222  23347899999998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.86  E-value=1  Score=40.95  Aligned_cols=184  Identities=7%  Similarity=-0.091  Sum_probs=102.2

Q ss_pred             CEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc----EEEEEe
Q 020784           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS  173 (321)
Q Consensus        98 ~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~----~~~~~~  173 (321)
                      .+|+.+....|+..+++.........  .......+++.+..+.+..+..      ..+.|..+++....    ....+.
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~------~~~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEEC------CCCEEEEC
T ss_pred             ceeEEeccceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEec------CCCeEEEEEcccCCCCCcceEEEe
Confidence            35666666778888877654433322  2355667788776777766653      34788888886521    222222


Q ss_pred             -eCCceeEEEEe--CCeEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC
Q 020784          174 -FRSEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (321)
Q Consensus       174 -~~~~v~~v~~~--~~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~  248 (321)
                       .-..+..+++.  ...++++..  +.|.+.++........+......-.-+++.+. ++.++.+-....+.|...++..
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~-~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT-TTEEEEEECSSSCCEEEEETTS
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc-cCeEEEEeCCCCCEEEEEeCCC
Confidence             12346666665  456666643  58999988755433333322111122344433 2333332112236777777665


Q ss_pred             cceEEe-eccccceeEEEECCCCCEEEEE-eCCCcEEEEEEcCCC
Q 020784          249 KRTKFI-MAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDG  291 (321)
Q Consensus       249 ~~~~~l-~~H~~~V~~vafspdg~~las~-S~Dgt~IrIWd~~tg  291 (321)
                      .....+ ...-...+.|++++++..|.-+ +..+. |..+|+...
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~  278 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGG  278 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCC
Confidence            444433 3334678999999876655444 44556 999998644

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.85  E-value=1.7  Score=43.40  Aligned_cols=204  Identities=7%  Similarity=-0.091  Sum_probs=110.5

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCc----eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        86 ~~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~----~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+..++|++.+..|. +-.. +.|+.++++...    ....... .......+++.+.++.|.++..      ..+.|.
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~------~~~~I~  496 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVS  496 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEE
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEec------CCCeEE
Confidence            3567888988554444 4333 446666665321    1111110 1123445677776666666553      247899


Q ss_pred             EEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEEC---CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          160 IWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~~---~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +.|++.......+... ..+..|++++.  .++.+..   ..|...++........+......-.-+++.+.. +.+.. 
T Consensus       497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~-~~LYw-  574 (791)
T 3m0c_C          497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS-GRLYW-  574 (791)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT-TEEEE-
T ss_pred             EEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCC-CeEEE-
Confidence            9998755433333222 35788888763  5666542   578888886544332333221111234444433 23333 


Q ss_pred             ecCCCCcEEEEeeCCcceEEe-ec--cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          234 PGLQKGQVRVEHYASKRTKFI-MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l-~~--H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      +-...+.|...++......++ ..  .-.....|++.. +.++++-...+. |...|..+|+.+..+..+
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~-I~~~dk~tG~~~~~l~~~  642 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA-IFSANRLTGSDVNLLAEN  642 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE-EEEEETTTCCCCEEEECS
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCE-EEEEeCCCCcceEEeecC
Confidence            245556788887766554433 22  233456777754 355555555566 888888888777666443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.67  E-value=1  Score=39.57  Aligned_cols=202  Identities=9%  Similarity=-0.066  Sum_probs=110.6

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCce-eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        87 ~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      .+..++|++.+..|. +-.. +.|..++.+.... ...... .-.....+++.+....+.++..      ..+.|.+.|.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p~glavd~~~g~ly~~d~------~~~~I~~~~~  108 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDS------ETNRIEVSNL  108 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCCCEEEEETTTTEEEEEET------TTTEEEEEET
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCCCccEEEEEcCCCeEEEEEC------CCCEEEEEEC
Confidence            466889998655444 4433 4466777655421 111110 0123345566665555555542      2478999998


Q ss_pred             CCCcEEEEE-eeCCceeEEEEeC--CeEEEEE---CCEEEEEEcCCcEEEEEEe-ccCCCCceEEEeeCCCceEEEeecC
Q 020784          164 HQSRCIGEL-SFRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       164 ~~~~~~~~~-~~~~~v~~v~~~~--~~~~~~~---~~~I~iwd~~~~~~~~~l~-~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      +.......+ ..-..+..+++++  ..++.+.   ...|..+++.... ...+. .....-.-++++++.+ .+.. +-.
T Consensus       109 dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~-~lY~-aD~  185 (318)
T 3sov_A          109 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQ-KLYW-ADA  185 (318)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTT-EEEE-EET
T ss_pred             CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCC-EEEE-EEC
Confidence            654322222 2223577888875  3555554   2478888875322 22232 2111112344444332 3333 356


Q ss_pred             CCCcEEEEeeCCcceEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          237 QKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      ..+.|...++......++ .+.......|++.. +.++.+-...+. |..+|..+|+....+..+
T Consensus       186 ~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~i~~~  248 (318)
T 3sov_A          186 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLREIHSD  248 (318)
T ss_dssp             TTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEECC
T ss_pred             CCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEEEeCC
Confidence            667888888765444433 33456678888864 455566555666 999999888876666544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.60  E-value=0.23  Score=45.91  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=77.7

Q ss_pred             ceeEEEEeC----CeEEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC---Cc-EEEEeeC
Q 020784          177 EVRSVKLRR----DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK---GQ-VRVEHYA  247 (321)
Q Consensus       177 ~v~~v~~~~----~~~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d---g~-V~i~d~~  247 (321)
                      .+..+++++    ..++++.. +.|+.+|..+++...... .  ......+..++++.++++ ...+   .. +...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~--~~~P~giavd~dG~lyVa-d~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-N--IGQCADVNFTLNGDMVVV-DDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-C--CSCEEEEEECTTCCEEEE-ECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-C--CCCccEEEECCCCCEEEE-cCCCCcccceEEEEECC
Confidence            466888886    45666643 789999997776543322 1  122344444555554442 2211   11 2222221


Q ss_pred             Ccce--EEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEE-eCCCcc--eeEEEeecCceEEEe
Q 020784          248 SKRT--KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEE-CCPSIS--AQSGLWLSSAWLRVL  318 (321)
Q Consensus       248 ~~~~--~~l~~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~tg~~i~~~-~~g~~~--~~~~~s~d~~~la~~  318 (321)
                      ....  ..+. .-.....++++| +|.++++-..++. |+.+|..+|+....+ ..+...  ..+++++++.+|.++
T Consensus       216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            1111  1222 345578899999 7887776666677 999999988873333 333322  247888888876664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.59  E-value=0.068  Score=56.20  Aligned_cols=172  Identities=13%  Similarity=0.188  Sum_probs=113.2

Q ss_pred             CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEE-e
Q 020784          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL-R  184 (321)
Q Consensus       106 ~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~-~  184 (321)
                      ..|.|-|+.......++..  ..  ...-++|..+.+|+-.|        +++.|+|+++...+..+.+...|.-..| +
T Consensus        48 ~~vvIidl~~~~~~~rrpi--~A--dsAIMnP~~~iiALrag--------~~lQiFnl~~k~klks~~~~e~VvfWkWis  115 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPI--SA--DSAIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (1630)
T ss_pred             ceEEEEECCCCCCcccccc--cc--hhhccCCCcceEEEecC--------CeEEEeehHHhhhhcccccCCCceEEEecC
Confidence            4588999987665544443  11  12235677777777652        7899999999999988888888877777 4


Q ss_pred             CCeEEEEECCEEEEEEcCC-cEEEEEEeccCC--CCceEEEeeCCCceEEEeecC------CCCcEEEEeeCCcceEEee
Q 020784          185 RDRIIVVLEQKIFVYNFAD-LKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGL------QKGQVRVEHYASKRTKFIM  255 (321)
Q Consensus       185 ~~~~~~~~~~~I~iwd~~~-~~~~~~l~~~~~--~~~~~~~s~~~d~~~la~sGs------~dg~V~i~d~~~~~~~~l~  255 (321)
                      ++.+.++++..|.-|++.. ...++.|+.|..  ...++.+..+++..+++..|-      ..|.+.++....+....+.
T Consensus       116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie  195 (1630)
T 1xi4_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (1630)
T ss_pred             CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhh
Confidence            6778889999999999963 344455554432  244667777778777776553      4677788877666556677


Q ss_pred             ccccceeEEEECC--C-CCEEEEEeC---CCcEEEEEEcCC
Q 020784          256 AHDSRIACFALTQ--D-GQLLATSST---KGTLVRIFNTLD  290 (321)
Q Consensus       256 ~H~~~V~~vafsp--d-g~~las~S~---Dgt~IrIWd~~t  290 (321)
                      ||-..-..+.+..  . ..+|+-+..   .++ ++|-++..
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~  235 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGT  235 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCC
Confidence            7766554444431  1 223332221   145 88888754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.46  E-value=1.2  Score=39.05  Aligned_cols=183  Identities=7%  Similarity=-0.033  Sum_probs=95.9

Q ss_pred             EEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE-EEEee-CC
Q 020784           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELSF-RS  176 (321)
Q Consensus        99 ~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~-~~~~~-~~  176 (321)
                      +|+.+....|+.++++............-.....+++....+.+..+..      ..+.|..++...+... ..+.. -.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~------~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET------TTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC------CCCcEEEEEccCCCceEEEEcCCCC
Confidence            4555555678888887653111111100123445666666666666652      3478999998765321 11111 12


Q ss_pred             ceeEEEEe--CCeEEEEE--CCEEEEEEcCCcEEEEEEe-ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce
Q 020784          177 EVRSVKLR--RDRIIVVL--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (321)
Q Consensus       177 ~v~~v~~~--~~~~~~~~--~~~I~iwd~~~~~~~~~l~-~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~  251 (321)
                      .+..+++.  ...++.+.  .+.|.++++..... ..+. .....-.-+++.+.. +.+..+--...+.|...++.....
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCe
Confidence            45566665  45566664  35899999864322 2232 211111223444322 333332112346677666654443


Q ss_pred             EEe-eccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCC
Q 020784          252 KFI-MAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       252 ~~l-~~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~t  290 (321)
                      ..+ ..--...+.|+|++++..| .+=+..+. |..+|+..
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG  197 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDG  197 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCC
Confidence            333 2233457899999865544 44444555 99999864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.38  E-value=0.77  Score=43.15  Aligned_cols=140  Identities=11%  Similarity=0.123  Sum_probs=79.3

Q ss_pred             ceeEEEEeC---CeEEEEEC--CEEEEEEcCCcEEEEEEeccC-CCCceEEEee-------CCCceEEEeecCCCCc---
Q 020784          177 EVRSVKLRR---DRIIVVLE--QKIFVYNFADLKLLHQIETIA-NPKGLCAVSQ-------GVGSLVLVCPGLQKGQ---  240 (321)
Q Consensus       177 ~v~~v~~~~---~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~-~~~~~~~~s~-------~~d~~~la~sGs~dg~---  240 (321)
                      ....+++.+   +.++++..  +.|++.|+.++.+...+.... .......+..       +.++..|.++...++.   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            356788886   35777754  478889988776654443322 1123444555       5455533322333322   


Q ss_pred             ---EEEEeeCC-cce------EEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEEEcC-------CCcE---------
Q 020784          241 ---VRVEHYAS-KRT------KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL-------DGTL---------  293 (321)
Q Consensus       241 ---V~i~d~~~-~~~------~~l~~H~~~V~~vafsp-dg~~las~S~Dgt~IrIWd~~-------tg~~---------  293 (321)
                         |.+.+... +..      ..+... .....++++| ++.++++-..++. |..+|+.       +++.         
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeecccccccc
Confidence               44443222 111      222222 3467889999 5677777777777 9999998       6664         


Q ss_pred             --EEE-EeCC--CcceeEEEeecCceEEEe
Q 020784          294 --LQE-ECCP--SISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       294 --i~~-~~~g--~~~~~~~~s~d~~~la~~  318 (321)
                        +.. +..+  .....++++++|.+|.++
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence              222 2222  334577889999865554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.33  E-value=3.3  Score=43.21  Aligned_cols=149  Identities=11%  Similarity=0.088  Sum_probs=89.5

Q ss_pred             CCcEEEEeCCCCcEEEEEeeC--CceeEEEEeCCeEEEEECCEEEEEEcCCcEEEE--EEeccCCCCceEEEeeCCC---
Q 020784          155 LNKVMIWDDHQSRCIGELSFR--SEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLH--QIETIANPKGLCAVSQGVG---  227 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~--~l~~~~~~~~~~~~s~~~d---  227 (321)
                      .+.|++.+...+..+.+....  ..|...+.+...++++.++.+.++++..+++..  +... ...+.++++.+.++   
T Consensus       491 ~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l-~~evscl~i~~~~~~~~  569 (1158)
T 3ei3_A          491 SASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEM-EHEVACLDITPLGDSNG  569 (1158)
T ss_dssp             SSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEEC-SSCEEEEECCCCSSSTT
T ss_pred             cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCC-CCceEEEEeecCCCCcc
Confidence            477999988766666666644  368888888888888877788888886654322  2221 23344445544332   


Q ss_pred             -ceEEEeecCC-CCcEEEEeeCCcceEEeecc--ccceeEEEEC--CCCCEEEEEeCCCcEEEEE--EcCCCcEEEE--E
Q 020784          228 -SLVLVCPGLQ-KGQVRVEHYASKRTKFIMAH--DSRIACFALT--QDGQLLATSSTKGTLVRIF--NTLDGTLLQE--E  297 (321)
Q Consensus       228 -~~~la~sGs~-dg~V~i~d~~~~~~~~l~~H--~~~V~~vafs--pdg~~las~S~Dgt~IrIW--d~~tg~~i~~--~  297 (321)
                       ..++|+ |.. |++|+|+.+..-.......-  ...+++|++.  ....+|..|-.||. +--+  |..+|++..+  .
T Consensus       570 ~s~~~aV-g~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~-l~~~~~d~~tg~l~d~r~~  647 (1158)
T 3ei3_A          570 LSPLCAI-GLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGA-LFYFGLNIETGLLSDRKKV  647 (1158)
T ss_dssp             CCSEEEE-EETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSE-EEEEEECTTTCCEEEEEEE
T ss_pred             cccEEEE-EECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCe-EEEEEEcCCCCccccceeE
Confidence             356775 764 99999998865332221111  2345565554  23457888888998 4334  4456776533  3


Q ss_pred             eCCCcceeE
Q 020784          298 CCPSISAQS  306 (321)
Q Consensus       298 ~~g~~~~~~  306 (321)
                      .-|.....+
T Consensus       648 ~LG~~pv~L  656 (1158)
T 3ei3_A          648 TLGTQPTVL  656 (1158)
T ss_dssp             ECCSSCCEE
T ss_pred             EcCCCceEE
Confidence            455554444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.95  E-value=0.084  Score=52.08  Aligned_cols=179  Identities=8%  Similarity=-0.060  Sum_probs=89.7

Q ss_pred             EEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC----CcEEEEEee-
Q 020784          100 FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELSF-  174 (321)
Q Consensus       100 lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~----~~~~~~~~~-  174 (321)
                      |+....+.|++.+++.........  .......+++.+..+.+.++..      ..+.|+.+++..    ......+.. 
T Consensus       380 ll~~~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~------~~~~I~~~~~~g~~~~~~~~~~i~~~  451 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRD  451 (699)
T ss_dssp             BCCCCTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCT------TTTSBEEEESCCCCC-CCCCCBCCSC
T ss_pred             EEecCccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEec------CCCeEEEEecCCCCCCcceEEEEeCC
Confidence            333344566666666544321111  1233445566666666655542      347888888875    111111111 


Q ss_pred             CCceeEEEEe--CCeEEEEE--CCEEEEEEcCCcEEEEEEecc-CCCCceEEEeeCCCceEEEeecCC-CCcEEEEeeCC
Q 020784          175 RSEVRSVKLR--RDRIIVVL--EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYAS  248 (321)
Q Consensus       175 ~~~v~~v~~~--~~~~~~~~--~~~I~iwd~~~~~~~~~l~~~-~~~~~~~~~s~~~d~~~la~sGs~-dg~V~i~d~~~  248 (321)
                      -..+..+++.  ...++++.  .+.|.++++........+... ..+ .-+++.+.. +.++. +... .+.|...++..
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P-~giavDp~~-g~ly~-td~~~~~~I~~~~~dG  528 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKP-RAIVVDPVH-GFMYW-TDWGTPAKIKKGGLNG  528 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCC-CCEECCSSS-SCCEE-CCCSSSCCEEBCCSSS
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCc-ceEEEccCC-CcEEE-cccCCCCeEEEEeCCC
Confidence            1134455554  44565553  358999998654432222221 122 223444332 23333 2322 25677666544


Q ss_pred             cceEEe-eccccceeEEEECCCC-CEEEEEeCCCcEEEEEEcCC
Q 020784          249 KRTKFI-MAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       249 ~~~~~l-~~H~~~V~~vafspdg-~~las~S~Dgt~IrIWd~~t  290 (321)
                      ....++ ...-...+.|+|+|++ +++++-+..+. |.++++..
T Consensus       529 ~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG  571 (699)
T 1n7d_A          529 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG  571 (699)
T ss_dssp             CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSS
T ss_pred             CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCC
Confidence            333333 2223457899999875 55555555666 99999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.95  E-value=2.9  Score=40.49  Aligned_cols=201  Identities=7%  Similarity=-0.081  Sum_probs=113.2

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg-~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+..++|++++..|... .. +.|..++++.......... .......+++.+.+..+..+..      ..+.|.+.|++
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~------~~~~I~v~~~d  110 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEGMAVDWLGKNLYWADT------GTNRIEVSKLD  110 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcceEEEEeCCCEEEEEEC------CCCEEEEEecC
Confidence            57899999876655544 33 4466666654333222221 1123445667666665655543      24788888886


Q ss_pred             CCcEEEEE-eeCCceeEEEEeC--CeEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          165 QSRCIGEL-SFRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       165 ~~~~~~~~-~~~~~v~~v~~~~--~~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      .......+ ..-..+..+++++  ..++.+.   ...|...++........+...   ..-..+..+.++..|.++-...
T Consensus       111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~---~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV---GRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC---SSEEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC---CCcceEEEccccCEEEEEECCC
Confidence            54322222 1223578889885  3455554   247877777543322222221   1223333343322222235566


Q ss_pred             CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       239 g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      +.|...++.......+...-.....|++.. +.++.|-...+. |...|..+|+....+..
T Consensus       188 ~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~~~~l~~  246 (628)
T 4a0p_A          188 NLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQNRTIIQG  246 (628)
T ss_dssp             TEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred             CEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCceEEEec
Confidence            788888876544445555555677898876 566666655666 99999888876555543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.35  E-value=4.3  Score=39.86  Aligned_cols=192  Identities=13%  Similarity=0.166  Sum_probs=107.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEe-eeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      .+.|+||.-..+|.+- .|..+|+..||-...+..... .. ....|..+....++ .+.+++        ++.+..+|.
T Consensus        21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~~~~~~~-~~~~i~~i~~d~~g-~lWigT--------~~Gl~~yd~   89 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQHFTYGEN-NNTRIYCGVIIDNT-YLYMGT--------DNGILVYNY   89 (758)
T ss_dssp             CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEECSCTTST-TSSCEEEEEEETTT-EEEEEE--------TTEEEEEET
T ss_pred             cceEEEEEECCCCCEE-EEECCCccccCCCceEEEEccCCC-CCceEEEEEEcCCC-cEEEEe--------CCCeEEEeC
Confidence            4679999999999744 345778777763222110000 00 12345554443333 444444        245889998


Q ss_pred             CCCcEEEEEe-eCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEec---cCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~---~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      .+.+...... ....|.++......+.+++.+.+..||..+++. ..+..   ......+.++..+.++.+.+  |+.+|
T Consensus        90 ~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~~G  166 (758)
T 3ott_A           90 RADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYV--GTYNG  166 (758)
T ss_dssp             TTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEE--EETTE
T ss_pred             CCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEE--EeCCC
Confidence            7764322100 122466666667788899888899999876554 33311   11123355666666666665  34455


Q ss_pred             cEEEEeeCCcceEEeec--c----ccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          240 QVRVEHYASKRTKFIMA--H----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l~~--H----~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                       +..++...+....+..  .    ...|+++....++..|-.|. ++. +..+|..+++.
T Consensus       167 -l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~~G-l~~~~~~~~~~  223 (758)
T 3ott_A          167 -LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-EGY-LFQYFPSTGQI  223 (758)
T ss_dssp             -EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-EEE-EEEEETTTTEE
T ss_pred             -HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-CCC-CeEEcCCCCeE
Confidence             4445554444332221  1    23488998888766433344 346 77899887754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.17  E-value=0.5  Score=43.47  Aligned_cols=106  Identities=14%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             EEeCCeEEEEECCEEEEEEcCCcEEEEEEeccC--CCCceEEEeeCCCceEEEeecCCCCcEEEEeeC----C-------
Q 020784          182 KLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA----S-------  248 (321)
Q Consensus       182 ~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~--~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~----~-------  248 (321)
                      +-+...++++.++.||.-++.....-+.++...  ....+.-+..+++|.+||+.|..  .|.|-.+-    .       
T Consensus        29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccccc
Confidence            334567888889999998887443344555431  11122234445566899986554  56663332    1       


Q ss_pred             cc--eEEeec------cccceeEEEECCCC---CEEEEEeCCCcEEEEEEcCC
Q 020784          249 KR--TKFIMA------HDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       249 ~~--~~~l~~------H~~~V~~vafspdg---~~las~S~Dgt~IrIWd~~t  290 (321)
                      ..  .+.+.-      ...+|..+.|+|-|   ..|++--.|++ ||+||+..
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~  158 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILN  158 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTC
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEccc
Confidence            01  122222      24679999999964   57888888999 99999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.95  E-value=4.2  Score=38.16  Aligned_cols=200  Identities=8%  Similarity=-0.051  Sum_probs=106.1

Q ss_pred             CCeEEEEE-------cCCCCEEEEEcCCc--------EEEEEecC-Cce------eEEeeeecCCceEEEEEecCCCeEE
Q 020784           86 PTLLHISF-------NQDHGCFAAGTDHG--------FRIYNCDP-FRE------IFRRDFERGGGIGVVEMLFRCNILA  143 (321)
Q Consensus        86 ~~V~~v~f-------s~dg~~lasg~~~g--------v~vw~~~~-~~~------~~~~~~~~~~~v~~v~~~~~~~~~~  143 (321)
                      +....++|       +++|++|..+...+        |.+++... ++.      .....+  .+.. .+++.++...|.
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~--~~p~-giavdp~~g~LY  262 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY--KQCN-GATIHPINGELY  262 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE--SCCC-CEEECTTTCCEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC--CCce-EEEEcCCCCeEE
Confidence            36899999       99999666665432        33444333 111      011122  2222 335566444555


Q ss_pred             EEeCCCCCCCCCCcEEEEeCC-------CCcE-----------EEE-Eee--CCceeEEEEeCCe--EEEEEC--CEEEE
Q 020784          144 LVGGGPDPQYPLNKVMIWDDH-------QSRC-----------IGE-LSF--RSEVRSVKLRRDR--IIVVLE--QKIFV  198 (321)
Q Consensus       144 ~~sg~~~~~~~d~~v~iWD~~-------~~~~-----------~~~-~~~--~~~v~~v~~~~~~--~~~~~~--~~I~i  198 (321)
                      ++..      ..+.|..+|++       ++..           ... +..  ....+.++|+++.  ++++-.  ..|+.
T Consensus       263 vtd~------~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          263 FNSY------EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             EEET------TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEC------CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence            5442      34789999987       4543           112 222  2346789998764  566643  58888


Q ss_pred             EEc--CCcEEE--EEEecc---C-------------CCCceEEEeeC-----CCceEEEeecCCCCcEEEEeeCCcceEE
Q 020784          199 YNF--ADLKLL--HQIETI---A-------------NPKGLCAVSQG-----VGSLVLVCPGLQKGQVRVEHYASKRTKF  253 (321)
Q Consensus       199 wd~--~~~~~~--~~l~~~---~-------------~~~~~~~~s~~-----~d~~~la~sGs~dg~V~i~d~~~~~~~~  253 (321)
                      ++.  ..+.+.  .++.+.   .             .|...+++...     .++.+.+ +-..+..|+.++. .+.+.+
T Consensus       337 id~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyV-aD~~N~rIr~i~~-~G~v~T  414 (496)
T 3kya_A          337 SDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYF-VDRLNFCVRKVTP-EGIVST  414 (496)
T ss_dssp             EEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEE-EEGGGTEEEEECT-TCBEEE
T ss_pred             EecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEE-EECCCCEEEEEeC-CCCEEE
Confidence            655  333321  233221   0             11112222210     2344444 2566678888773 445555


Q ss_pred             eecc------------------------ccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          254 IMAH------------------------DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       254 l~~H------------------------~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      +-+.                        -.....|+++++ |.++++=+.... ||.+++....+++..
T Consensus       415 iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r-Irki~~~~~~~~~~~  482 (496)
T 3kya_A          415 YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT-IRTISMEQEENVAGD  482 (496)
T ss_dssp             EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE-EEEEEECCCC-----
T ss_pred             EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE-EEEEECCCCcccccC
Confidence            5432                        124788999997 776665555555 999999988777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.58  E-value=5.5  Score=38.39  Aligned_cols=200  Identities=10%  Similarity=-0.074  Sum_probs=105.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CcEEEEEecCCce-eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ....++|++.+..|....-  +.|..++++.... ...... .-.....+++.+.++.+.++..      ..+.|.+.|.
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~~~P~GlAvD~~~~~ly~~d~------~~~~I~v~~~  113 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDS------ETNRIEVSNL  113 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SCSCEEEEEEETTTTEEEEEET------TTTEEEEEET
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CCCCcCeEEEEecCCEEEEEeC------CCCEEEEEEC
Confidence            5788999987666655443  3465666654321 111111 1135567788876666666553      3478999998


Q ss_pred             CCCcEEEEEe-eCCceeEEEEeCC--eEEEEE---CCEEEEEEcCCcEEEEEEe-ccCCCCceEEEeeCCCceEEEeecC
Q 020784          164 HQSRCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~---~~~I~iwd~~~~~~~~~l~-~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      +.......+. .-..+..+++++.  .++.+.   ...|...++..... ..+. .....-.-+++.+.. +.+.. +-.
T Consensus       114 dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~P~Glald~~~-~~LY~-aD~  190 (619)
T 3s94_A          114 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEE-QKLYW-ADA  190 (619)
T ss_dssp             TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSSEEEEEEETTT-TEEEE-EET
T ss_pred             CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCCCcEEEEEccC-CEEEE-EeC
Confidence            7544322221 2235778888763  455553   23666666653222 2222 111111223444332 33333 345


Q ss_pred             CCCcEEEEeeCCcceEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          237 QKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      ..+.|...++.......+ .+.......|++..+ .++.|-...+. |...|..+|+....+.
T Consensus       191 ~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~-V~~~d~~tg~~~~~i~  251 (619)
T 3s94_A          191 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHS-ILACNKYTGEGLREIH  251 (619)
T ss_dssp             TTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCS-EEEEESSSCCCCEECC
T ss_pred             CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCE-EEEEECCCCcccEEEe
Confidence            566787777765443322 223344578888766 55555555677 9999998887655543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.47  E-value=3.2  Score=35.27  Aligned_cols=175  Identities=13%  Similarity=0.108  Sum_probs=101.0

Q ss_pred             CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC--CceeEEEEeCC-eEEEEEC--CEEEEEEcC
Q 020784          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRRD-RIIVVLE--QKIFVYNFA  202 (321)
Q Consensus       128 ~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~-~~~~~~~--~~I~iwd~~  202 (321)
                      +.+..+++.++++.+.++...      ++.|...|.. ++.+..+.+.  ...-.+++.++ .++++.+  +.+.++++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~------~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINK------PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEET------TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEECC------CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            457888888887777776643      5788899988 8888887665  36777787665 4445543  588888875


Q ss_pred             CcE---EEEEEecc----CCCCc--eEEEeeCCCceEEEeecCCCCcEEEEeeC----CcceEEee-------cccccee
Q 020784          203 DLK---LLHQIETI----ANPKG--LCAVSQGVGSLVLVCPGLQKGQVRVEHYA----SKRTKFIM-------AHDSRIA  262 (321)
Q Consensus       203 ~~~---~~~~l~~~----~~~~~--~~~~s~~~d~~~la~sGs~dg~V~i~d~~----~~~~~~l~-------~H~~~V~  262 (321)
                      ...   .+......    ....+  -+++.+..+ .++++  .......||.+.    ...+..+.       .+...+.
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va--~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFF--KEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEE--EESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEE--ECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence            432   23333321    11122  344444432 34432  333344454432    11223221       1345689


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe--CCC--------cceeEEEeecCc
Q 020784          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC--CPS--------ISAQSGLWLSSA  313 (321)
Q Consensus       263 ~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~--~g~--------~~~~~~~s~d~~  313 (321)
                      .|+|+|....|..-|.....+-++|.. |+.+..+.  .+.        +.-.+++..+|.
T Consensus       177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            999998755554555555558899965 66665543  332        234567777775

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.08  E-value=5.3  Score=36.71  Aligned_cols=104  Identities=18%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             EEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeec---CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc-
Q 020784           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-  167 (321)
Q Consensus        92 ~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~-  167 (321)
                      ....+|+-|+.+-++.+|.-++.+...-......+   -+.+..+.++++++++|+.+        +++|.|-.+-.+. 
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--------~~~V~Vv~LP~~~~   98 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--------DNEIFVMEVPWGYS   98 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--------SSEEEEEECCTTCS
T ss_pred             EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--------CCeEEEEEecCccc
Confidence            34467777777777778877766433211222200   23567788999999999987        5788888765221 


Q ss_pred             -----------EEEEEee-------CCceeEEEEeCC-----eEEEEEC-CEEEEEEcCC
Q 020784          168 -----------CIGELSF-------RSEVRSVKLRRD-----RIIVVLE-QKIFVYNFAD  203 (321)
Q Consensus       168 -----------~~~~~~~-------~~~v~~v~~~~~-----~~~~~~~-~~I~iwd~~~  203 (321)
                                 ....+..       ...|..+.|||-     .+++.++ +.||+||+..
T Consensus        99 ~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A           99 NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                       1223332       246999999984     3555554 6999999964

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.95  E-value=1.7  Score=46.05  Aligned_cols=195  Identities=11%  Similarity=0.157  Sum_probs=108.4

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC-cEE
Q 020784           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCI  169 (321)
Q Consensus        91 v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~-~~~  169 (321)
                      .-.+|..+.||-=....+.|||+++...+....+  ...|....|. +.+.+++++        +..|..|++... ..+
T Consensus        71 AIMnP~~~iiALrag~~lQiFnl~~k~klks~~~--~e~VvfWkWi-s~~~l~lVT--------~~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM--TDDVTFWKWI-SLNTVALVT--------DNAVYHWSMEGESQPV  139 (1630)
T ss_pred             hccCCCcceEEEecCCeEEEeehHHhhhhccccc--CCCceEEEec-CCCeeEEEc--------CCeEEEeccCCCCccH
Confidence            3456667777766667789999988776655555  4556665654 456777776        478999998642 233


Q ss_pred             EEEeeC-----CceeEEEEeCC--eEEEEE--------CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC-CceEEEe
Q 020784          170 GELSFR-----SEVRSVKLRRD--RIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVC  233 (321)
Q Consensus       170 ~~~~~~-----~~v~~v~~~~~--~~~~~~--------~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~-d~~~la~  233 (321)
                      ..|..+     ..|.+...+++  .+++++        .|.+.+|....... +.+++|........+...+ ...++++
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEE
Confidence            233322     24555555554  333321        26888998865332 3445554322221111111 1123332


Q ss_pred             e--cCCCCcEEEEeeCCc----ceE------E-ee--ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          234 P--GLQKGQVRVEHYASK----RTK------F-IM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       234 s--Gs~dg~V~i~d~~~~----~~~------~-l~--~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      .  ....|++.|.++...    +..      . +.  +-..-..++..|+....+-....-|. |.++|+.||.++..-+
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhcc
Confidence            1  112357777665321    110      1 11  11233566777777666666667787 9999999999886543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.84  E-value=7.2  Score=37.65  Aligned_cols=186  Identities=7%  Similarity=-0.055  Sum_probs=104.0

Q ss_pred             EEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-Cc
Q 020784           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SE  177 (321)
Q Consensus        99 ~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~  177 (321)
                      +|+.+....|+..+++............-.....+++.+..+.+..+..      ..+.|..++++.......+... ..
T Consensus         8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~------~~~~I~r~~~~g~~~~~v~~~g~~~   81 (628)
T 4a0p_A            8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI------SLKTISRAFMNGSALEHVVEFGLDY   81 (628)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSC
T ss_pred             EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEEC------CCCeEEEEECCCCCcEEEEeCCCCC
Confidence            5555566778888887655433332211134556777777777766653      3578998988755433333322 24


Q ss_pred             eeEEEEe--CCeEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC-CceEEEeecCCCCcEEEEeeCCcceE
Q 020784          178 VRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKRTK  252 (321)
Q Consensus       178 v~~v~~~--~~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~-d~~~la~sGs~dg~V~i~d~~~~~~~  252 (321)
                      +..+++.  ...++.+..  +.|.+.++..... ..+... .-..-..+..++ .+.+..+--+..+.|...++......
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~-~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWK-DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECS-SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeC-CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            5566664  466777643  5899998864322 222211 111123333343 33444321122456666666555444


Q ss_pred             EeeccccceeEEEECCCCCEEEEE-eCCCcEEEEEEcCCCcE
Q 020784          253 FIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTL  293 (321)
Q Consensus       253 ~l~~H~~~V~~vafspdg~~las~-S~Dgt~IrIWd~~tg~~  293 (321)
                      .+-..-...+.|++++++..|.-+ ...+. |..+|+..+..
T Consensus       160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~  200 (628)
T 4a0p_A          160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNR  200 (628)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC
T ss_pred             EEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCce
Confidence            444455678999999976555444 44555 99999875433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.59  E-value=5.4  Score=35.60  Aligned_cols=157  Identities=10%  Similarity=0.086  Sum_probs=83.6

Q ss_pred             CCCcEEEEeCCCCc-EEEEEeeC--------CceeEEEEeCC-----eEEEEE----CCEEEEEEcCC--c--EEEEEEe
Q 020784          154 PLNKVMIWDDHQSR-CIGELSFR--------SEVRSVKLRRD-----RIIVVL----EQKIFVYNFAD--L--KLLHQIE  211 (321)
Q Consensus       154 ~d~~v~iWD~~~~~-~~~~~~~~--------~~v~~v~~~~~-----~~~~~~----~~~I~iwd~~~--~--~~~~~l~  211 (321)
                      .+|.|.++|.++.. ....+...        ..+..+.+..+     .++++.    +.+|.+|++..  .  ..+.++.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            46889999987421 12233221        25777776441     466663    35788887743  2  2333443


Q ss_pred             ccCCCCceEEEeeCCCceEEEeecC-----------------CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEE
Q 020784          212 TIANPKGLCAVSQGVGSLVLVCPGL-----------------QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA  274 (321)
Q Consensus       212 ~~~~~~~~~~~s~~~d~~~la~sGs-----------------~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~la  274 (321)
                      +. .-....++..++++.+.+. +.                 ..|.|.-++  .+....+...-...+.|+|||||++|.
T Consensus       161 g~-~~~~pND~~v~~~G~fyvt-~~~~ftd~~~~~~e~~~~~~~g~vyr~d--~~~~~~~~~~l~~pNGia~spDg~~lY  236 (355)
T 3sre_A          161 HK-LLPSVNDIVAVGPEHFYAT-NDHYFIDPYLKSWEMHLGLAWSFVTYYS--PNDVRVVAEGFDFANGINISPDGKYVY  236 (355)
T ss_dssp             CT-TCSSEEEEEEEETTEEEEE-ESCSCSSHHHHHHHHHTTCCCEEEEEEC--TTCCEEEEEEESSEEEEEECTTSSEEE
T ss_pred             cC-CCCCCceEEEeCCCCEEec-CCcEeCCcccccchhhccCCccEEEEEE--CCeEEEeecCCcccCcceECCCCCEEE
Confidence            32 2223444545556676653 22                 123333333  334444444445679999999998766


Q ss_pred             EEe-CCCcEEEEEEcC-CCcEE--EEEeCCCcceeEEEee-cCceE
Q 020784          275 TSS-TKGTLVRIFNTL-DGTLL--QEECCPSISAQSGLWL-SSAWL  315 (321)
Q Consensus       275 s~S-~Dgt~IrIWd~~-tg~~i--~~~~~g~~~~~~~~s~-d~~~l  315 (321)
                      .+. ..+. |..|++. +|++-  +.+..+...-.+++.. +|.+.
T Consensus       237 vadt~~~~-I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          237 IAELLAHK-IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             EEEGGGTE-EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             EEeCCCCe-EEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEE
Confidence            554 4556 9999986 45442  2343332233445556 46544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.54  E-value=4.5  Score=34.49  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=90.5

Q ss_pred             CCCEEEEEcCC------cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           96 DHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        96 dg~~lasg~~~------gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      ++++++.|+.+      .+.+||..+.+........ ...........++ .+.+.+|.... ..-+.+.+||..+.+..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~-~iyv~GG~~~~-~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR-DRRSTLGAAVLNG-LLYAVGGFDGS-TGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETT-EEEEEEEECSS-CEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC-ccccceEEEEECC-EEEEEcCCCCC-ccCceEEEEeCCCCeEe
Confidence            67777777632      3557777666543322221 1111111122244 44444432110 01246888998887755


Q ss_pred             EEEeeCC--ceeEEEEeCCeEEEEEC---------CEEEEEEcCCcEEEEEEeccCCCC-ceEEEeeCCCceEEEeecCC
Q 020784          170 GELSFRS--EVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       170 ~~~~~~~--~v~~v~~~~~~~~~~~~---------~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~~~d~~~la~sGs~  237 (321)
                      ..-....  .-.++....+.+++..+         +.+.+||+.+.+= ..+.....+. ...+...  ++.++++ |+.
T Consensus       138 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~  213 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNLLYAV-GGH  213 (302)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred             ecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE-EECCCCccccccccEEEE--CCEEEEE-CCC
Confidence            4322221  12233444556665531         3588999876542 2222211111 1222223  3366665 554


Q ss_pred             C-----CcEEEEeeCCcceEEeecc---ccceeEEEECCCCCEEEEEeCCC-----cEEEEEEcCCCc
Q 020784          238 K-----GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGT  292 (321)
Q Consensus       238 d-----g~V~i~d~~~~~~~~l~~H---~~~V~~vafspdg~~las~S~Dg-----t~IrIWd~~tg~  292 (321)
                      +     ..+.++|..+..-..+...   ...-..+.+  ++++++.|+.++     . |.+||..+.+
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  278 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLAS-VEYYNPTTDK  278 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCccccc-EEEEcCCCCe
Confidence            3     3577788766543332211   111122222  677888887654     4 7889988765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.50  E-value=4.5  Score=34.41  Aligned_cols=189  Identities=9%  Similarity=0.058  Sum_probs=93.8

Q ss_pred             CCCCEEEEEcC------CcEEEEEecCCc---eeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           95 QDHGCFAAGTD------HGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        95 ~dg~~lasg~~------~gv~vw~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      -++++++.|+.      +.+.+||..+.+   ........ ........... .+.+.+.+|.... ...+.+.++|..+
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~~d~~~  137 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGLAGATTL-GDMIYVSGGFDGS-RRHTSMERYDPNI  137 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBSCEEEEE-TTEEEEECCBCSS-CBCCEEEEEETTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccceeEEEE-CCEEEEEcccCCC-cccceEEEEcCCC
Confidence            35677777663      236678877765   43222221 11111111122 3455555543221 1135799999988


Q ss_pred             CcEEEEEeeCC--ceeEEEEeCCeEEEEEC-------CEEEEEEcCCcEEEEEEeccCCCC-ceEEEeeCCCceEEEeec
Q 020784          166 SRCIGELSFRS--EVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       166 ~~~~~~~~~~~--~v~~v~~~~~~~~~~~~-------~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~~~d~~~la~sG  235 (321)
                      .+....-....  .-.++....+.+++..+       +.+.+||+.+.+- ..+.....+. ...++..  ++.++++ |
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~-G  213 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--NDHIYVV-G  213 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-C
T ss_pred             CeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--CCEEEEE-e
Confidence            77544322221  12233334556666532       4789999876543 2332221221 1222233  3366665 5


Q ss_pred             CCC-----CcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCCC----cEEEEEEcCCCc
Q 020784          236 LQK-----GQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKG----TLVRIFNTLDGT  292 (321)
Q Consensus       236 s~d-----g~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~Dg----t~IrIWd~~tg~  292 (321)
                      +.+     ..|.++|..+..-..+..   ......++.+  ++++++.|+.++    ..|.+||.++.+
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            543     357778877654333221   1111222333  677888887663    227788888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.45  E-value=5.1  Score=34.94  Aligned_cols=186  Identities=11%  Similarity=0.023  Sum_probs=92.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeee-ecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC-
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD-  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~-  163 (321)
                      ..+..+.+.++++.++++...+  ||............. .....+..+.+.+++..+++...       .+-.+-+|- 
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~--v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------G~~~~S~d~g  192 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGA--IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-------GSFYSTWEPG  192 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCC--EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-------SSEEEEECTT
T ss_pred             CCeEEEEEECCCCEEEEeCCcc--EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-------CcEEEEeCCC
Confidence            3578888888888888776544  343333332222221 01334566666666555544331       133344442 


Q ss_pred             -CCCcEEEEEeeCCceeEEEEeCC-eEEEEE-CCEEEEEEcCCcEEEEEEecc--CCCCceEEEeeCCCceEEEeecCCC
Q 020784          164 -HQSRCIGELSFRSEVRSVKLRRD-RIIVVL-EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       164 -~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~-~~~I~iwd~~~~~~~~~l~~~--~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                       .+-+.+ .......+..+.+.++ .++++. ++.+++.+...++....+...  .......++...+++.++++ |. +
T Consensus       193 G~tW~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~-~  269 (327)
T 2xbg_A          193 QTAWEPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GG-A  269 (327)
T ss_dssp             CSSCEEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ES-T
T ss_pred             CCceeEC-CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-eC-C
Confidence             121222 1122345667777553 444554 457766643334443333322  11123455555556677764 43 6


Q ss_pred             CcEEEEeeCCcc-eEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 020784          239 GQVRVEHYASKR-TKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (321)
Q Consensus       239 g~V~i~d~~~~~-~~~l~---~H~~~V~~vafspdg~~las~S~Dgt~IrIW  286 (321)
                      |.|.+ ....+. -..+.   .+...+.+|.|.+++.. +.++.+|+ |.-+
T Consensus       270 g~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~-~~~G~~G~-i~~~  318 (327)
T 2xbg_A          270 GALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG-FILGQKGI-LLRY  318 (327)
T ss_dssp             TCEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETTEE-EEECSTTE-EEEE
T ss_pred             CeEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCCce-EEEcCCce-EEEE
Confidence            66644 222222 22232   23467889999866654 45667888 5444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.17  E-value=5  Score=34.18  Aligned_cols=186  Identities=12%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             CCEEEEEcC-----CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEE
Q 020784           97 HGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (321)
Q Consensus        97 g~~lasg~~-----~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~  171 (321)
                      +.+++.|+.     +.+.+||..+.+........ ........... .+.+.+.+|.... ..-+.+.+||..+.+....
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP-SRRCRAGMVYM-AGLVFAVGGFNGS-LRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEESCBCSS-SBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCC-cccccceEEEE-CCEEEEEeCcCCC-ccccceEEECCCCCceeeC
Confidence            445555553     23567777766543221210 11111111112 4455555553211 1236789999988875443


Q ss_pred             EeeCC--ceeEEEEeCCeEEEEEC-------CEEEEEEcCCcEEEEEEeccCCCCc-eEEEeeCCCceEEEeecCCC---
Q 020784          172 LSFRS--EVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVGSLVLVCPGLQK---  238 (321)
Q Consensus       172 ~~~~~--~v~~v~~~~~~~~~~~~-------~~I~iwd~~~~~~~~~l~~~~~~~~-~~~~s~~~d~~~la~sGs~d---  238 (321)
                      -....  .-.++....+.+++..+       +.+.+||+.+.+- ..+.....+.. ..+...  ++.++++ |+.+   
T Consensus        93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~  168 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSVGVGVV--GGLLYAV-GGYDVAS  168 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-CCEETTT
T ss_pred             CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeE-eecCCCCCcccCceEEEE--CCEEEEE-eCCCCCC
Confidence            22221  11233334555555432       3688899876543 23322222221 122223  3366665 5432   


Q ss_pred             ----CcEEEEeeCCcceEEee---ccccceeEEEECCCCCEEEEEeCCC-----cEEEEEEcCCCc
Q 020784          239 ----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGT  292 (321)
Q Consensus       239 ----g~V~i~d~~~~~~~~l~---~H~~~V~~vafspdg~~las~S~Dg-----t~IrIWd~~tg~  292 (321)
                          ..+.++|..+..-..+.   ........+.+  ++++++.|+.++     . +.+||+.+.+
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~  231 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNA  231 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTE
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCC
Confidence                24667777655422221   11111222333  577888887653     5 8899998764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.95  E-value=10  Score=37.21  Aligned_cols=190  Identities=16%  Similarity=0.128  Sum_probs=108.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+.|+++....+|. |-.|+.+|+..||..+.+....... ....|..+.. .+ ..+.+++        .+.|..+|..
T Consensus        62 ~~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~-~~-g~lWigt--------~~Gl~~~~~~  129 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQPETD-FPTDVRTMAL-QG-DTLWLGA--------LNGLYTYQLQ  129 (758)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTEEEEEETTTTEECCCSCC-CCSCEEEEEE-ET-TEEEEEE--------TTEEEEEETT
T ss_pred             CceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEECcccC-CCceEEEEEe-cC-CcEEEEc--------CCcceeEeCC
Confidence            35799998888875 4455578988999776532110000 0123444432 23 3455544        2468889987


Q ss_pred             CCcEEEEEe----e-CCceeEEEEe-CCeEEEEECCEEEEEEcCCcEEEEEEeccCC----CCceEEEeeCCCc-eEEEe
Q 020784          165 QSRCIGELS----F-RSEVRSVKLR-RDRIIVVLEQKIFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGS-LVLVC  233 (321)
Q Consensus       165 ~~~~~~~~~----~-~~~v~~v~~~-~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~----~~~~~~~s~~~d~-~~la~  233 (321)
                      +++......    . ...|.++... ...+.+++.+.+..|+..+.+.. .+.....    ...+.++..+.++ .+.+ 
T Consensus       130 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-  207 (758)
T 3ott_A          130 SRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWI-  207 (758)
T ss_dssp             TCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEE-
T ss_pred             CCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEE-
Confidence            766432201    1 2357777766 45688888888889998776542 2322111    1124555555433 3333 


Q ss_pred             ecCCCCcEEEEeeCCcceEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          234 PGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~~~~l~~-H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                       |+.+| +..++..++....+.. ....|++++...+|.+.+ |. ++. +.+++..+++.
T Consensus       208 -gt~~G-l~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT-~~G-l~~~~~~~~~~  263 (758)
T 3ott_A          208 -GTEGY-LFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GT-DNG-LYVYHNDTTPL  263 (758)
T ss_dssp             -EEEEE-EEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EE-TTE-EEEECCTTSCC
T ss_pred             -EECCC-CeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-Ee-CCc-eeEEecCCCcE
Confidence             34333 5556665554433221 245699999999998776 44 456 77888877654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.74  E-value=6.3  Score=34.46  Aligned_cols=135  Identities=10%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             CcEEEEeCCCCcEEEEEeeCC--ce-eEEEEeCCeEEEEEC--------CEEEEEEc--CCcEEEEEEeccCCCC---ce
Q 020784          156 NKVMIWDDHQSRCIGELSFRS--EV-RSVKLRRDRIIVVLE--------QKIFVYNF--ADLKLLHQIETIANPK---GL  219 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~--~v-~~v~~~~~~~~~~~~--------~~I~iwd~--~~~~~~~~l~~~~~~~---~~  219 (321)
                      +.+.++|..+.+....-....  .- .++....+.+++..+        ..+.+||+  .+. ....+.....+.   ..
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccc
Confidence            679999998887554332221  11 345555666666532        35777876  332 222222211111   22


Q ss_pred             EEEeeCCCceEEEeecCCC----------------------CcEEEEeeCCcceE---EeeccccceeEEEECCCCCEEE
Q 020784          220 CAVSQGVGSLVLVCPGLQK----------------------GQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLA  274 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~d----------------------g~V~i~d~~~~~~~---~l~~H~~~V~~vafspdg~~la  274 (321)
                      .+...+  +.++++ |+.+                      ..+.++|..+..-.   .+......-.++.  -++++++
T Consensus       247 ~~~~~~--~~iyv~-GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v  321 (357)
T 2uvk_A          247 FAGISN--DSLIFA-GGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLI  321 (357)
T ss_dssp             EEEEET--TEEEEE-CCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEE
T ss_pred             eEEEEC--CEEEEE-cCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEE
Confidence            233333  366665 5421                      14566777654322   2222222222232  3678888


Q ss_pred             EEeCCCc-----EEEEEEcCCCcEEEE
Q 020784          275 TSSTKGT-----LVRIFNTLDGTLLQE  296 (321)
Q Consensus       275 s~S~Dgt-----~IrIWd~~tg~~i~~  296 (321)
                      .|+.++.     -|-++++++++.+..
T Consensus       322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             EeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            8886531     144558888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.73  E-value=5.8  Score=34.00  Aligned_cols=187  Identities=12%  Similarity=0.055  Sum_probs=89.1

Q ss_pred             CCCEEEEEcC----------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           96 DHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        96 dg~~lasg~~----------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ++++++.|+.          +.+.+||..+.+........ ...........+ +.+.+.+|.... ...+.+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~-~~iyv~GG~~~~-~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS-VPRNRIGVGVID-GHIYAVGGSHGC-IHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS-SCCBTCEEEEET-TEEEEECCEETT-EECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC-cCccccEEEEEC-CEEEEEcCCCCC-cccccEEEECCCC
Confidence            5677776664          23557776665433222110 111111111223 345555542210 0125688999988


Q ss_pred             CcEEEEEeeCC--ceeEEEEeCCeEEEEEC-------CEEEEEEcCCcEEEEEEeccCCCC-ceEEEeeCCCceEEEeec
Q 020784          166 SRCIGELSFRS--EVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       166 ~~~~~~~~~~~--~v~~v~~~~~~~~~~~~-------~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~~~d~~~la~sG  235 (321)
                      .+....-....  .-.++....+.+++..+       +.+.+||+.+.+- ..+.....+. ...++..  ++.++++ |
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-G  222 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAA-G  222 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEE-C
T ss_pred             CeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEE-e
Confidence            76543222221  11233334566666532       4688999876542 2222211111 1222223  3466665 5


Q ss_pred             CCC-----CcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCCC-----cEEEEEEcCCCc
Q 020784          236 LQK-----GQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGT  292 (321)
Q Consensus       236 s~d-----g~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~Dg-----t~IrIWd~~tg~  292 (321)
                      +.+     ..+.++|..+..-..+..   .......+.+  ++++++.|+.++     . |.+||..+.+
T Consensus       223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  289 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDS-VECYDPDTDT  289 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCE-EEEEETTTTE
T ss_pred             CCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccce-EEEEcCCCCE
Confidence            543     357778876654332221   1111222222  577777777543     3 6788887754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.70  E-value=5.8  Score=33.98  Aligned_cols=192  Identities=13%  Similarity=0.093  Sum_probs=91.5

Q ss_pred             EEcCCCCEEEEEcC-----CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCC---CCCCCCCcEEEEeC
Q 020784           92 SFNQDHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDD  163 (321)
Q Consensus        92 ~fs~dg~~lasg~~-----~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~---~~~~~d~~v~iWD~  163 (321)
                      +..-++.+++.|+.     +.+.+||..+.+........ ........... .+.+.+.+|..   ......+.+.++|.
T Consensus        20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQ-VPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCC-cccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            33445667776662     34667887766543221110 01111111122 34555555431   10011256889999


Q ss_pred             CCCcEEEEEeeCC--ceeEEEEeCCeEEEEEC-------CEEEEEEcCCcEEEEEEeccCCCC-ceEEEeeCCCceEEEe
Q 020784          164 HQSRCIGELSFRS--EVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVC  233 (321)
Q Consensus       164 ~~~~~~~~~~~~~--~v~~v~~~~~~~~~~~~-------~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~~~d~~~la~  233 (321)
                      .+++....-....  .-.++....+.+++..+       +.+.+||+.+.+- ..+.....+. ...+...  ++.++++
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~  174 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--NRLLYAV  174 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE-eECCCCCccccceEEEEE--CCEEEEE
Confidence            8876543222211  11233334556665532       4688999876542 2222111111 1122222  3466665


Q ss_pred             ecCCC-----CcEEEEeeCCcceEEee---ccccceeEEEECCCCCEEEEEeCC-----CcEEEEEEcCCCc
Q 020784          234 PGLQK-----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (321)
Q Consensus       234 sGs~d-----g~V~i~d~~~~~~~~l~---~H~~~V~~vafspdg~~las~S~D-----gt~IrIWd~~tg~  292 (321)
                       |+.+     ..+.++|..+..-..+.   .....-.++.+  ++++++.|+.+     .. +.+||+.+.+
T Consensus       175 -GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~  242 (308)
T 1zgk_A          175 -GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETET  242 (308)
T ss_dssp             -CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             -eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCc
Confidence             5543     34667777655422221   11111223333  67777877764     45 8899988764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.57  E-value=5.8  Score=33.70  Aligned_cols=187  Identities=11%  Similarity=0.077  Sum_probs=91.4

Q ss_pred             CCCEEEEEc-C------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc-
Q 020784           96 DHGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-  167 (321)
Q Consensus        96 dg~~lasg~-~------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~-  167 (321)
                      ++.+++.|+ .      +.+.+||..+.+........ ...........+ +.+.+.+|... ....+.+.+||..+++ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~-~~l~v~GG~~~-~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT-RKRRYVASVSLH-DRIYVIGGYDG-RSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS-SCCBSCEEEEET-TEEEEECCBCS-SCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC-hhhccccEEEEC-CEEEEEcCCCC-CccCceEEEEECCCCCC
Confidence            456666666 2      23567777666533221110 111111112223 45555555321 1123679999998876 


Q ss_pred             --EEEEEeeCC--ceeEEEEeCCeEEEEEC-------CEEEEEEcCCcEEEEEEeccCCCC-ceEEEeeCCCceEEEeec
Q 020784          168 --CIGELSFRS--EVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       168 --~~~~~~~~~--~v~~v~~~~~~~~~~~~-------~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~~~d~~~la~sG  235 (321)
                        ....-....  .-.++....+.+++..+       +.+.+||+.+.+-. .+.....+. ...++..  ++.++++ |
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~-G  166 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS-MLGDMQTAREGAGLVVA--SGVIYCL-G  166 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE-EEEECSSCCBSCEEEEE--TTEEEEE-C
T ss_pred             CeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE-ECCCCCCCcccceEEEE--CCEEEEE-C
Confidence              443322221  12233334556666542       47899998765432 222211111 1222223  3466665 5


Q ss_pred             CCC-----CcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCC-----CcEEEEEEcCCCc
Q 020784          236 LQK-----GQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (321)
Q Consensus       236 s~d-----g~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~D-----gt~IrIWd~~tg~  292 (321)
                      +.+     ..+.++|..+..-..+..   ....-.++.+  ++++++.|+.+     .. |.+||+.+.+
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  233 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDS  233 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCc
Confidence            543     346677776654332221   1111222333  57777888765     35 8899998865

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.99  E-value=0.4  Score=42.74  Aligned_cols=60  Identities=13%  Similarity=0.186  Sum_probs=37.5

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCceeE--EEE-------------eCCeEEEEE-CCEEEEEEcCCcEEEEEEecc
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEVRS--VKL-------------RRDRIIVVL-EQKIFVYNFADLKLLHQIETI  213 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~-------------~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~  213 (321)
                      .||.|..+|.++|.....+.....+..  +..             ....+++++ ++++...|+.+|+.+.++...
T Consensus        65 ~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           65 GDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             CCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            478999999888765544443221110  111             233344443 468999999999999998754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=90.92  E-value=7.5  Score=33.82  Aligned_cols=193  Identities=12%  Similarity=0.082  Sum_probs=93.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEee-ee---cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD-FE---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~-~~---~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      ..+.+|.|.+++..+++|.. +..+...+-++ ..... ..   ....+..+.+.  .+.+.+++       .++.|..-
T Consensus        36 ~~~~~v~~~~~~~~~~~G~~-g~i~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~--~~~~~~~g-------~~g~i~~S  104 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVGVN-ATLMETRDGGQ-TWEPRTLVLDHSDYRFNSVSFQ--GNEGWIVG-------EPPIMLHT  104 (327)
T ss_dssp             SCEEEEEESSSSCEEEEETT-TEEEEESSTTS-SCEECCCCCSCCCCEEEEEEEE--TTEEEEEE-------ETTEEEEE
T ss_pred             CcEEEEEECCCCcEEEEcCC-CeEEEeCCCCC-CCeECCCCCCCCCccEEEEEec--CCeEEEEE-------CCCeEEEE
Confidence            47999999988888887654 43333333332 11111 10   02245555554  34444444       23434332


Q ss_pred             eCCCCcEEEEEe----eCCceeEEEEe-CCeEEEEEC-CEE-EEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          162 DDHQSRCIGELS----FRSEVRSVKLR-RDRIIVVLE-QKI-FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       162 D~~~~~~~~~~~----~~~~v~~v~~~-~~~~~~~~~-~~I-~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      + +.|+.-..+.    ....+..+.+. +..++++.+ +.| +-.|  .++....+... ....+..+...+++.++++ 
T Consensus       105 ~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~-  179 (327)
T 2xbg_A          105 T-DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQE-AIGVMRNLNRSPSGEYVAV-  179 (327)
T ss_dssp             S-STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECS-CCCCEEEEEECTTSCEEEE-
T ss_pred             C-CCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecC-CCcceEEEEEcCCCcEEEE-
Confidence            1 2232211211    12345566653 445555553 333 2222  23333333221 1223445555566677774 


Q ss_pred             cCCCCcEEE-EeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 020784          235 GLQKGQVRV-EHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEE  297 (321)
Q Consensus       235 Gs~dg~V~i-~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~  297 (321)
                      |. +|.+.. +|-....-. .-......+..+++.+++.+++. +.+|. +++.+...|+....+
T Consensus       180 g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~-~~~s~~D~G~tW~~~  241 (327)
T 2xbg_A          180 SS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGK-IAFSDPDNSENWGEL  241 (327)
T ss_dssp             ET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTE-EEEEETTEEEEECCC
T ss_pred             EC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCce-EEEecCCCCCeeEec
Confidence            44 455554 553222211 12345567899999999987764 45777 776643335544443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.68  E-value=8.8  Score=32.65  Aligned_cols=188  Identities=13%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             CCCEEEEEcC-----CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEE
Q 020784           96 DHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (321)
Q Consensus        96 dg~~lasg~~-----~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~  170 (321)
                      ++++++.|+.     +.+.+||..+.+........ ........... .+.+.+.+|.+......+.+-+||..+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP-TPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS-SCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC-ccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            6677777763     33567787776543332221 11111111122 34455555532111134679999998887544


Q ss_pred             EEeeCC--ceeEEEEeCCeEEEEE-----------CCEEEEEEcCCcEEEEEEeccCCCC-ceEEEeeCCCceEEEeecC
Q 020784          171 ELSFRS--EVRSVKLRRDRIIVVL-----------EQKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       171 ~~~~~~--~v~~v~~~~~~~~~~~-----------~~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~~~d~~~la~sGs  236 (321)
                      .-....  .-.++....+.+++..           .+.+.+||+.+.+- ..+.....+. ...++..  ++.++++ |+
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~-GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-TELCPMIEARKNHGLVFV--KDKIFAV-GG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-CC
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE-EECCCccchhhcceEEEE--CCEEEEE-eC
Confidence            322221  1122333455665553           24588999977542 3333222221 1222222  3366665 55


Q ss_pred             CCC-----cEEEEeeCCcceEEee---ccccceeEEEECCCCCEEEEEeCC-----CcEEEEEEcCCCc
Q 020784          237 QKG-----QVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (321)
Q Consensus       237 ~dg-----~V~i~d~~~~~~~~l~---~H~~~V~~vafspdg~~las~S~D-----gt~IrIWd~~tg~  292 (321)
                      .++     .+.++|..+..-..+.   .......++.+  ++++++.|+.+     .. |.+||..+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~  274 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDK  274 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCe
Confidence            432     4666777665432221   11222233333  67788888754     45 7889988864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.47  E-value=4.6  Score=38.50  Aligned_cols=95  Identities=9%  Similarity=-0.019  Sum_probs=64.2

Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCCc------ce-------EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYASK------RT-------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~~------~~-------~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      ...|||.+++++|--+.+|.++++..-      .+       ..-..-.-.....+|.++|.-..|.--|.. |--|++.
T Consensus       329 ~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSq-vvkWni~  407 (638)
T 3sbq_A          329 NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQ-VVKWNME  407 (638)
T ss_dssp             EECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHH
T ss_pred             eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecce-EEEEecc
Confidence            335677888888999999999887621      11       111112334688999999966666666777 8899998


Q ss_pred             CC----------cEEEEEeCCCcceeEEE------eecCceEEEe
Q 020784          290 DG----------TLLQEECCPSISAQSGL------WLSSAWLRVL  318 (321)
Q Consensus       290 tg----------~~i~~~~~g~~~~~~~~------s~d~~~la~~  318 (321)
                      ..          ..+..+...-+.-.+..      ..||+||.+.
T Consensus       408 ~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          408 EAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             HHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             HHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            64          56777765544444444      4899998764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.12  E-value=10  Score=32.53  Aligned_cols=148  Identities=17%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             CCeEEEEeCCC--CCCCCCCcEEEEeCCCCcEEEEEeeCC--ceeEEEEeCCeEEEEEC--------CEEEEEEcCCcEE
Q 020784          139 CNILALVGGGP--DPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVLE--------QKIFVYNFADLKL  206 (321)
Q Consensus       139 ~~~~~~~sg~~--~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~~~~~~~~--------~~I~iwd~~~~~~  206 (321)
                      .+.+.+.+|..  ......+.+.++|..+++....-....  .-.++....+.+++..+        +.+.+||+.+.+=
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            44555555521  001124679999998876543222221  12233445556665532        4789999876532


Q ss_pred             EEEEeccCCCC-ceEEEeeCCCceEEEeecCCCC-----cEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEe
Q 020784          207 LHQIETIANPK-GLCAVSQGVGSLVLVCPGLQKG-----QVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       207 ~~~l~~~~~~~-~~~~~s~~~d~~~la~sGs~dg-----~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S  277 (321)
                       ..+.....+. ...+...  ++.++++ |+.++     .+.++|..+..-..+..   .......+.+  ++++++.|+
T Consensus       178 -~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG  251 (315)
T 4asc_A          178 -KELAPMQTARSLFGATVH--DGRIIVA-AGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGG  251 (315)
T ss_dssp             -EECCCCSSCCBSCEEEEE--TTEEEEE-EEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEE
T ss_pred             -EECCCCCCchhceEEEEE--CCEEEEE-eccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECC
Confidence             2222211121 1222233  3366665 54433     35557766654332221   1111222333  567777777


Q ss_pred             CCC-------------cEEEEEEcCCCc
Q 020784          278 TKG-------------TLVRIFNTLDGT  292 (321)
Q Consensus       278 ~Dg-------------t~IrIWd~~tg~  292 (321)
                      .++             ..|.+||+.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          252 FATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             ccccCcCCccccccccCcEEEecCCCCh
Confidence            642             126678888764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=88.88  E-value=1.4  Score=39.16  Aligned_cols=112  Identities=14%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             eEEEEE-CCEEEEEEcCCcEEEEEEeccC-CCCceEEEe-e--CCCceEEEeecCCCCcEEEEeeCCcceE-Eeec----
Q 020784          187 RIIVVL-EQKIFVYNFADLKLLHQIETIA-NPKGLCAVS-Q--GVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA----  256 (321)
Q Consensus       187 ~~~~~~-~~~I~iwd~~~~~~~~~l~~~~-~~~~~~~~s-~--~~d~~~la~sGs~dg~V~i~d~~~~~~~-~l~~----  256 (321)
                      .+++++ ++.|.-+|..+|+.+-+++... .+  ..... +  ..++..++...+.||.+..++..++..+ .+..    
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p--~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQP--LIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCC--SEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCC--cEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            344444 6799999999999999987651 11  11111 0  0122444421257888887776655322 1111    


Q ss_pred             cccceeE---EEE-C----CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          257 HDSRIAC---FAL-T----QDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       257 H~~~V~~---vaf-s----pdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                      ..+++..   ..+ .    -.+..+.+|+.+|+ +.-.|+++|+.+.++..+.
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~~  141 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPGS  141 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTTC
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecCC
Confidence            1112221   000 0    03456778999999 9999999999999997664

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.32  E-value=0.85  Score=46.57  Aligned_cols=39  Identities=8%  Similarity=0.051  Sum_probs=34.6

Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       260 ~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      .+.+++..++..++.|-+.|++ +|||++.+|+++.+..-
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeecc
Confidence            4677888888899999999999 99999999999998753

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.67  E-value=15  Score=31.77  Aligned_cols=204  Identities=9%  Similarity=-0.013  Sum_probs=97.1

Q ss_pred             EcCCCCEEEEEcC-CcEEEEEecCCce-eEEeeeecCCceEEEEEecCCCeEEEEeCCCC-------CCCCCCcEEEEeC
Q 020784           93 FNQDHGCFAAGTD-HGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPD-------PQYPLNKVMIWDD  163 (321)
Q Consensus        93 fs~dg~~lasg~~-~gv~vw~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~-------~~~~d~~v~iWD~  163 (321)
                      |+.+|.+|.-... +.-.||.++..+. .....   ...  +--+..+++.+..+.....       .......|+..++
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~---~~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLS---NDT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEE---EEE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEcc---CCc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            3456777665542 2335776654332 11111   122  2234567777776653210       0012356777787


Q ss_pred             CCCcEEEEEeeCCceeEEEEeCCeEEEEE---CC--EEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCC
Q 020784          164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (321)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~---~~--~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (321)
                      ..++......  .....+....+.++.+.   ++  .|..-++...+ ...+..+..    .++++.+  ..|..+....
T Consensus        96 dg~~~~~l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g--~~iy~t~~g~  166 (302)
T 3s25_A           96 NGHGSTVLDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSD--RYFYYNNPKN  166 (302)
T ss_dssp             TSCCCEEEEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEET--TEEEEECTTT
T ss_pred             CCCcceEeec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEEC--CEEEEEeCCC
Confidence            7665322222  22234556667777665   33  56555665333 334443322    2345544  4455444445


Q ss_pred             CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCc-EEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEE
Q 020784          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       239 g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt-~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                      ..|...++..+....+..  +.. ...++|+|.+|+=..+++. .|..-++..+. ...+..   .....+++++.+|..
T Consensus       167 ~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~---~~~~~~~~~g~~Iy~  239 (302)
T 3s25_A          167 GQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE---ANIEHYNVYGSLIFY  239 (302)
T ss_dssp             CCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC---SCEEEEEEETTEEEE
T ss_pred             ceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC---CCcceEEECCCEEEE
Confidence            677777776655444422  222 2346688887776554432 14333444333 222311   111345666666543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=84.49  E-value=21  Score=31.43  Aligned_cols=63  Identities=13%  Similarity=0.160  Sum_probs=38.8

Q ss_pred             EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcE--EEEEe----eCCceeEEEEeCC-----eEEEEEC------
Q 020784          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS----FRSEVRSVKLRRD-----RIIVVLE------  193 (321)
Q Consensus       131 ~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~--~~~~~----~~~~v~~v~~~~~-----~~~~~~~------  193 (321)
                      ..+++.++++++ ++.       .++.|++++  .++.  +..+.    .......++++++     .++++..      
T Consensus        34 ~~ia~~pdG~l~-V~e-------~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           34 WALAFLPDGGML-IAE-------RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             EEEEECTTSCEE-EEE-------TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             eEEEEcCCCeEE-EEe-------CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            456777787744 333       347899998  3432  22221    1235788999987     6777643      


Q ss_pred             -CEEEEEEcCC
Q 020784          194 -QKIFVYNFAD  203 (321)
Q Consensus       194 -~~I~iwd~~~  203 (321)
                       +.|..|+...
T Consensus       104 ~~~v~r~~~~~  114 (352)
T 2ism_A          104 RNQVVRLRHLG  114 (352)
T ss_dssp             EEEEEEEEECS
T ss_pred             ccEEEEEEeCC
Confidence             5777888764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.38  E-value=0.84  Score=47.54  Aligned_cols=39  Identities=8%  Similarity=0.051  Sum_probs=33.9

Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       260 ~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      .+.+++..++..++.|-+.|++ +||||+.+|+|+.+..-
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~-LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCE-EEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCE-EEEEECCCCCeEEeech
Confidence            4566777788899999999999 99999999999998764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=84.21  E-value=30  Score=33.16  Aligned_cols=183  Identities=7%  Similarity=-0.028  Sum_probs=91.8

Q ss_pred             EEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcE-EEEEeeC-Cc
Q 020784          100 FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELSFR-SE  177 (321)
Q Consensus       100 lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~-~~~~~~~-~~  177 (321)
                      |.-+..+.|+..+++............-+....+++.+..+.+..+..      ..+.|..++.+.... ...+... ..
T Consensus        12 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~------~~~~I~r~~~~g~~~~~~v~~~~~~~   85 (619)
T 3s94_A           12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLLS   85 (619)
T ss_dssp             EEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEET------TTTEEEEEEC-----CEEEECSSCSC
T ss_pred             EEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEEC------CCCeEEEEEccCCCceEEEEeCCCCC
Confidence            444445666766665432111111101234556677776777766652      347788888865432 1122222 35


Q ss_pred             eeEEEEeC--CeEEEEEC--CEEEEEEcCCcEEEEEEe-ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceE
Q 020784          178 VRSVKLRR--DRIIVVLE--QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (321)
Q Consensus       178 v~~v~~~~--~~~~~~~~--~~I~iwd~~~~~~~~~l~-~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~  252 (321)
                      +..+++..  ..++++..  +.|.+.++..... +.+. .....-.-+++.+.. +.++.+--...+.|...++......
T Consensus        86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           86 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             cCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceE
Confidence            67777764  56666643  5999999865432 2332 211111234444432 3343321122345655555544433


Q ss_pred             Eee-ccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcCCC
Q 020784          253 FIM-AHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG  291 (321)
Q Consensus       253 ~l~-~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~tg  291 (321)
                      ++. ..-...+.|++++++. +..+=+..+. |...|+...
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~  203 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGT  203 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCC
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCC
Confidence            332 3345689999998654 4444455566 888888643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=84.15  E-value=18  Score=30.57  Aligned_cols=186  Identities=11%  Similarity=0.120  Sum_probs=90.4

Q ss_pred             CCEEEEEcC---CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 020784           97 HGCFAAGTD---HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (321)
Q Consensus        97 g~~lasg~~---~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~  173 (321)
                      +.+++.|+.   +.+.+||..+.+........ ........... .+.+.+.+|..  ...-+.+.++|..+++....-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPF-EKRRDAACVFW-DNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCS-CCCBSCEEEEE-TTEEEEECCBS--SSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCC-cccceeEEEEE-CCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCC
Confidence            345555653   44778887776543222110 11111111122 34455555532  1124678999999887654322


Q ss_pred             eCC--ceeEEEEeCCeEEEEEC--------CEEEEEEcCCcEEEEEEeccCCCC-ceEEEeeCCCceEEEeecCC-----
Q 020784          174 FRS--EVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGLQ-----  237 (321)
Q Consensus       174 ~~~--~v~~v~~~~~~~~~~~~--------~~I~iwd~~~~~~~~~l~~~~~~~-~~~~~s~~~d~~~la~sGs~-----  237 (321)
                      ...  .-.++....+.+++..+        +.+.+||..+.+- ..+.....+. ...+...  ++.++++ |+.     
T Consensus        88 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~  163 (306)
T 3ii7_A           88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW-HTKPSMLTQRCSHGMVEA--NGLIYVC-GGSLGNNV  163 (306)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-CCEESCTT
T ss_pred             CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce-EeCCCCcCCcceeEEEEE--CCEEEEE-CCCCCCCC
Confidence            222  11233344556665532        3688999877643 2232211111 1222223  3366665 543     


Q ss_pred             ----CCcEEEEeeCCcceEEeecc--ccceeEEEECCCCCEEEEEeCC-----CcEEEEEEcCCCc
Q 020784          238 ----KGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (321)
Q Consensus       238 ----dg~V~i~d~~~~~~~~l~~H--~~~V~~vafspdg~~las~S~D-----gt~IrIWd~~tg~  292 (321)
                          -..+.++|..+..-..+...  ...-.+++.. ++++++.|+.+     .. +.+||+.+.+
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~-~~~yd~~~~~  227 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDN-VEYYDIKLNE  227 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCC-EEEEETTTTE
T ss_pred             cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCce-EEEeeCCCCc
Confidence                23466788766543333211  1111122222 67777777654     34 7889988764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.34  E-value=32  Score=32.81  Aligned_cols=128  Identities=13%  Similarity=0.177  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCEEEEEcC--CcEEEEEecCCce-----------eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           89 LHISFNQDHGCFAAGTD--HGFRIYNCDPFRE-----------IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~-----------~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ..|.++|||+++++++.  .++-|++++....           ....+.  .-+.+-+...|+++..+..+     +|-|
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~G~aYTt-----lfid  398 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGRGNAYTT-----LFID  398 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSSSEEEEE-----ETTT
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCCCceEee-----eeec
Confidence            35889999999998886  5588999874221           111111  11223333334444445444     4578


Q ss_pred             CcEEEEeCCCC----------cEEEEEeeCCceeEEEEe--------CCeEEEEE--------------CCEEEEEEc--
Q 020784          156 NKVMIWDDHQS----------RCIGELSFRSEVRSVKLR--------RDRIIVVL--------------EQKIFVYNF--  201 (321)
Q Consensus       156 ~~v~iWD~~~~----------~~~~~~~~~~~v~~v~~~--------~~~~~~~~--------------~~~I~iwd~--  201 (321)
                      ..|..||+...          ..+..+..+-.+--+.-.        .+.+++..              -..-.++|+  
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            99999997642          345455544333222221        11222221              025677787  


Q ss_pred             CCcEEEEEEeccCCCCceEEEe
Q 020784          202 ADLKLLHQIETIANPKGLCAVS  223 (321)
Q Consensus       202 ~~~~~~~~l~~~~~~~~~~~~s  223 (321)
                      .++++++.......|...+.+.
T Consensus       479 dkM~lv~D~P~~~EPHda~~v~  500 (638)
T 3sbq_A          479 DEMKLVHDGPTFAEPHDCIMAR  500 (638)
T ss_dssp             SSCEEEEEEEESSCCCCEEEEE
T ss_pred             CceEEEecCCCCCCCcceEEec
Confidence            4577777766655554444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=83.32  E-value=28  Score=32.14  Aligned_cols=129  Identities=9%  Similarity=0.066  Sum_probs=79.0

Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      ...|.|-|+.++..+..-....  -+.-+|+.  .+++=.+.++.|||+++.+.++.+..... +....+-.  + ..|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~A--dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~-VvfWkWis--~-~~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISA--DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWIS--L-NTVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCC--SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSC-CCEEEEEE--T-TEEE
T ss_pred             CCeEEEEECCCCCcceeccccc--ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCC-ceEEEecC--C-CeEE
Confidence            3579999998866442222111  12234443  33443577999999999888887776443 33333332  2 2343


Q ss_pred             eecCCCCcEEEEeeCC--cceEEeeccc----cceeEEEECCCCCEEEEEe-------CCCcEEEEEEcCCCc
Q 020784          233 CPGLQKGQVRVEHYAS--KRTKFIMAHD----SRIACFALTQDGQLLATSS-------TKGTLVRIFNTLDGT  292 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~--~~~~~l~~H~----~~V~~vafspdg~~las~S-------~Dgt~IrIWd~~tg~  292 (321)
                      ..  .+..|+-|++..  .+.+.|..|.    ..|..-..+++.++++-.+       -.|. +.+|..+.+.
T Consensus       121 lV--T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~-mQLYS~er~~  190 (494)
T 1bpo_A          121 LV--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA-MQLYSVDRKV  190 (494)
T ss_dssp             EE--CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE-EEEEESTTCC
T ss_pred             EE--cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce-EEEeeccccc
Confidence            31  234788899853  5677887774    4577777789999877533       2456 8888887654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.09  E-value=2  Score=42.17  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       259 ~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                      ..|.++.+.  ..+++|-+.|.+ +||||+++++++.+..-.
T Consensus       222 ~~Is~~~~~--~~fLftL~~Dh~-LRiWsL~t~~lv~t~DL~  260 (729)
T 3f7f_A          222 SVISCKLFH--ERYLIVLTQNCH-LKIWDLTSFTLIQDYDMV  260 (729)
T ss_dssp             CEEEEEEET--TTEEEEEETTCE-EEEEETTTTEEEEEEETT
T ss_pred             ceEEEeccC--CcEEEEEEcCCe-EEEEEcCCCceEEeeccc
Confidence            456666653  679999999999 999999999999988763

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=82.24  E-value=26  Score=30.88  Aligned_cols=134  Identities=9%  Similarity=0.132  Sum_probs=68.3

Q ss_pred             EEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc-EEEEEe----eCCceeEEEEeCC-----eEEEEEC-------
Q 020784          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----FRSEVRSVKLRRD-----RIIVVLE-------  193 (321)
Q Consensus       131 ~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~-~~~~~~----~~~~v~~v~~~~~-----~~~~~~~-------  193 (321)
                      ..+++.++++++ ++.       .++.|+++| .+++ .+..+.    .......++++++     .++++..       
T Consensus        32 ~~ia~~pdG~l~-V~e-------~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           32 WSIAPLGGGRYL-VTE-------RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             EEEEEEETTEEE-EEE-------TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             eEEEEcCCCeEE-EEe-------CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            445667777643 333       347888887 3444 222221    1235788999986     6666532       


Q ss_pred             --CEEEEEEcCCc-------EE-EEEEecc-CCCCceEEEeeCCCceEEEeecCC------------CCcEEEEeeCCc-
Q 020784          194 --QKIFVYNFADL-------KL-LHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ------------KGQVRVEHYASK-  249 (321)
Q Consensus       194 --~~I~iwd~~~~-------~~-~~~l~~~-~~~~~~~~~s~~~d~~~la~sGs~------------dg~V~i~d~~~~-  249 (321)
                        +.|..|+....       +. +..+... .+....++|.  +|+.+.+..|+.            .|.|.-.+...+ 
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~--pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~  180 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG--PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP  180 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC--TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC--CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence              56777776543       11 1123211 1112334444  455666644542            233433333222 


Q ss_pred             --------ceEEeeccccceeEEEECC-CCCEEEEE
Q 020784          250 --------RTKFIMAHDSRIACFALTQ-DGQLLATS  276 (321)
Q Consensus       250 --------~~~~l~~H~~~V~~vafsp-dg~~las~  276 (321)
                              ....-.+| .....++|+| +|.++++-
T Consensus       181 p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEe
Confidence                    11122334 3467899999 78877764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=81.82  E-value=27  Score=30.79  Aligned_cols=139  Identities=10%  Similarity=-0.012  Sum_probs=81.1

Q ss_pred             eeEEEEeC--CeEEEEE--CCEEEEEEcCCcEEEEE-Eec----cCCCCceEEEee---CCCceEEEeec----------
Q 020784          178 VRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQ-IET----IANPKGLCAVSQ---GVGSLVLVCPG----------  235 (321)
Q Consensus       178 v~~v~~~~--~~~~~~~--~~~I~iwd~~~~~~~~~-l~~----~~~~~~~~~~s~---~~d~~~la~sG----------  235 (321)
                      .-+..|+.  ..++++.  .++|..||...+..... +..    .........+..   ++++.++++.-          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            45677875  5666665  57999999875543322 221    111123456677   67777777422          


Q ss_pred             --CCCCcEEEEeeC---Ccc-eE--Eeeccc-----------cceeEEEECCCCCEEEEEeCC-CcEEEEEEcCCCcEEE
Q 020784          236 --LQKGQVRVEHYA---SKR-TK--FIMAHD-----------SRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQ  295 (321)
Q Consensus       236 --s~dg~V~i~d~~---~~~-~~--~l~~H~-----------~~V~~vafspdg~~las~S~D-gt~IrIWd~~tg~~i~  295 (321)
                        +.+..|..+|+.   ++. +.  .|....           ...+.++..++|+.-++++.. +. |-..+-. |+.+.
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~-I~rV~pd-G~~~~  172 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA-IARVSAD-GKTVS  172 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE-EEEECTT-SCCEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe-EEEEeCC-CCEEe
Confidence              124567778877   443 32  232222           248899999999999999987 66 4333332 44333


Q ss_pred             EEeCCC----c---ceeEEEeecCceEEEe
Q 020784          296 EECCPS----I---SAQSGLWLSSAWLRVL  318 (321)
Q Consensus       296 ~~~~g~----~---~~~~~~s~d~~~la~~  318 (321)
                      .+....    .   ...+.+.+||..|.++
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~  202 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAF  202 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEE
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEE
Confidence            321111    1   2256778889888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 5e-07
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI 213
             +WD  +  C    +   S++ ++    +         +    +++    + L      
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL 272
               G+ +VS      +L+  G       V       R   +  HD+R++C  +T DG  
Sbjct: 268 NIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 273 LATSSTKGTLVRIFN 287
           +AT S     ++I+N
Sbjct: 327 VATGSWDSF-LKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQ 209
           + ++ +  +    +     I E +     +S K     +    ++ I +++ +    L  
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ 268
           +    N         G G  +L         +RV  Y +KR  K + AH+  +      +
Sbjct: 243 LVGHDNWVRGVLFHSG-GKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299

Query: 269 DGQLLATSSTKGTLVRIF 286
               + T S   T V+++
Sbjct: 300 TAPYVVTGSVDQT-VKVW 316

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
             +         + F     S +    ++ D + + T S       ++  +
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVYEVI 336

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
           H+  I   + + DG+ L ++  +G  +  ++   G   +
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNR 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.9
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.58
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.43
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.1
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.94
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.91
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.61
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.46
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.43
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.27
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.99
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.79
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.55
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.36
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.27
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.89
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.51
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.27
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.21
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.99
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.73
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.69
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.5
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.71
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.42
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.29
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.26
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	87.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.1
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	85.39
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	82.13

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.9e-31  Score=234.42  Aligned_cols=230  Identities=15%  Similarity=0.147  Sum_probs=186.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ...|.+.|+|++|+|||++||+|+.++ |+|||+...+......+. |.+.|..++++++++.+++++.+     .++.+
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-----~~~~~  128 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-----RERFG  128 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC-----SSCSE
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc-----ccccc
Confidence            357888999999999999999998865 889999887765444432 67889999999999999888855     35789


Q ss_pred             EEEeCCCCcEEEEEeeC-CceeEEEEeCCe---EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +|||.++++.+..+..+ ..|.+++|+++.   ++.++ ++.|++||+++++....+..|..++..+.+  ++++.+++ 
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~--~p~~~~l~-  205 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY--NPDGSLFA-  205 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE--CTTSSEEE-
T ss_pred             cccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccccccccccccc--Cccccccc-
Confidence            99999998887777655 479999998753   44444 479999999999999998888766555555  45668887 


Q ss_pred             ecCCCCcEEEEeeCCcc-eEE-------eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc--c
Q 020784          234 PGLQKGQVRVEHYASKR-TKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI--S  303 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~~-~~~-------l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~--~  303 (321)
                      +|+.||.|++|+...+. ...       ..+|.+.|++++|+|+|++|||||.||+ |+|||++++++++++..++.  .
T Consensus       206 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         206 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCCccc
Confidence            48899999999987654 223       3468999999999999999999999999 99999999999999976544  3


Q ss_pred             eeEEEeecCceEEEee
Q 020784          304 AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       304 ~~~~~s~d~~~la~~~  319 (321)
                      ....+.+++++|+++.
T Consensus       285 ~~~~~~~~~~~l~s~s  300 (311)
T d1nr0a1         285 QQLGIIWTKQALVSIS  300 (311)
T ss_dssp             CEEEEEECSSCEEEEE
T ss_pred             eEEEEEecCCEEEEEE
Confidence            3457888999988764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-28  Score=216.33  Aligned_cols=226  Identities=9%  Similarity=0.133  Sum_probs=182.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|.+.|++++|+|||++|++|+.++ |+|||+..........+. |...+..+.+++++..+++++       .++.|+
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~d~~i~  166 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-------SDGNIA  166 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccc-------cccccc
Confidence            46778999999999999999998865 889998765443333322 567788888888888888877       679999


Q ss_pred             EEeCCCCcEEEEEee-CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          160 IWDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       160 iWD~~~~~~~~~~~~-~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      +||+.++++...... ...|.+++|+++  .++++. ++.|++||+++++.++.+... ..  +.++..++++.+++ +|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~-~~--i~~l~~~~~~~~l~-~~  242 (337)
T d1gxra_         167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-SQ--IFSLGYCPTGEWLA-VG  242 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SC--EEEEEECTTSSEEE-EE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceeecccccc-cc--eEEEEEcccccccc-ee
Confidence            999999987776654 457999999865  455554 579999999999988877642 33  44555555667887 48


Q ss_pred             CCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceE
Q 020784          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWL  315 (321)
Q Consensus       236 s~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~l  315 (321)
                      +.||.|++|++..........|...|++++|+|+|++||+|+.||+ |+|||+.+++++.++........+.+++|+++|
T Consensus       243 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             ETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred             ccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEccCCCCEEEEEEeCCCCEE
Confidence            9999999999998888888899999999999999999999999999 999999999999988654444455788899999


Q ss_pred             EEee
Q 020784          316 RVLR  319 (321)
Q Consensus       316 a~~~  319 (321)
                      +++.
T Consensus       322 ~t~s  325 (337)
T d1gxra_         322 VTGS  325 (337)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-28  Score=214.41  Aligned_cols=234  Identities=9%  Similarity=0.136  Sum_probs=184.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCC----------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD----------  150 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~----------  150 (321)
                      .+|.+.|++|+|+|+|++||+|+.|+ |+|||+.+++.+..... |.+.|..+++.+++..++.......          
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE   92 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeecccccccccccccccccccccccc
Confidence            57899999999999999999999865 88999998887766654 6777888888777766665443221          


Q ss_pred             -------------------------CCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEc
Q 020784          151 -------------------------PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNF  201 (321)
Q Consensus       151 -------------------------~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~  201 (321)
                                               ....|+.+++||+++++.+..+..+ ..+.++.++++.  ++++. ++.|++|++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEee
Confidence                                     0114688999999999988887755 478889998753  44444 579999999


Q ss_pred             CCcEEEEEEeccCCCCceEEEeeCC------------------CceEEEeecCCCCcEEEEeeCCcc-eEEeecccccee
Q 020784          202 ADLKLLHQIETIANPKGLCAVSQGV------------------GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA  262 (321)
Q Consensus       202 ~~~~~~~~l~~~~~~~~~~~~s~~~------------------d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~  262 (321)
                      .+++.+..+..+...+..+.++++.                  ++.+++ +|+.||.|++|+..++. +.++.+|...|+
T Consensus       173 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  251 (317)
T d1vyhc1         173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVR  251 (317)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE-eccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence            9999988888776655555554432                  223455 58999999999998765 668999999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       263 ~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      +++|+|+|++||+|+.||+ |+|||++++++++++. +|...+  +.+++++++|+++.
T Consensus       252 ~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         252 GVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEECCCCCEEEEEECCCe-EEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence            9999999999999999999 9999999999999995 555444  46778899998864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=5.3e-28  Score=214.00  Aligned_cols=226  Identities=10%  Similarity=0.070  Sum_probs=174.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .++|.+.|++++|+|||++||+|+.|| |+|||+.+++.+..... |.+.|..++++++++.+++++       .|+.++
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~-------~d~~i~  122 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG-------LDNICS  122 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEE-------TTCCEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeeec-------ccceee
Confidence            468999999999999999999999866 88999999988777665 688999999999999998888       679999


Q ss_pred             EEeCCCCc----EEEEEeeCC------------------------------------------ceeEEEEeCC--eEEEE
Q 020784          160 IWDDHQSR----CIGELSFRS------------------------------------------EVRSVKLRRD--RIIVV  191 (321)
Q Consensus       160 iWD~~~~~----~~~~~~~~~------------------------------------------~v~~v~~~~~--~~~~~  191 (321)
                      +|+.....    ....+..+.                                          .+....+.+.  .++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            99965432    111111110                                          1122222221  23333


Q ss_pred             E-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce-EE--eeccccceeEEEEC
Q 020784          192 L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF--IMAHDSRIACFALT  267 (321)
Q Consensus       192 ~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~-~~--l~~H~~~V~~vafs  267 (321)
                      . ++.|++||+++++.+.++..|...+..+++++  ++.+|+ +|+.||.|++|++..... ..  ...|...|++++|+
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p--~~~~l~-s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFP--NGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC--CCCEEE-EEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence            3 57999999999999999998877666666654  557887 489999999999886553 33  34677889999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee--EEEeecCceEEEee
Q 020784          268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ--SGLWLSSAWLRVLR  319 (321)
Q Consensus       268 pdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~--~~~s~d~~~la~~~  319 (321)
                      |+|++|++|+.||+ |+|||+.+++++.++. +|...+  +.+++|+++|+++.
T Consensus       280 ~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s  331 (340)
T d1tbga_         280 KSGRLLLAGYDDFN-CNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             SSSCEEEEEETTSC-EEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCCEEEEEECCCE-EEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEc
Confidence            99999999999999 9999999999999994 666544  46778899998864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.1e-27  Score=217.80  Aligned_cols=223  Identities=13%  Similarity=0.097  Sum_probs=172.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .++|+|++|+|||++||+|+.++ |+|||..+.+......+. |.+.|..++++++++++++++       .|++|+|||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-------~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-------TDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-------TTSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-------CCCeEEEEe
Confidence            35899999999999999998866 889999887654444443 788999999999999998887       689999999


Q ss_pred             CCCCcEEEEEee---CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEE----eccCCCCceEEEeeCCCceEEE
Q 020784          163 DHQSRCIGELSF---RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI----ETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       163 ~~~~~~~~~~~~---~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l----~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      ++++.....+..   ...|.+++|+++  .++++. ++.|++|++........+    ..+..  .+.++.+++++.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSVLLA  157 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSSEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccc--cccccccccccccee
Confidence            988776555433   357999999875  455555 469999988543322222    22333  345555566778888


Q ss_pred             eecCCCCcEEEEeeCCc-------------------ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          233 CPGLQKGQVRVEHYASK-------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~-------------------~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                       +|+.||.|++|+....                   .+....+|...|.+++|+|+|++||+++.|++ |+|||+.++++
T Consensus       158 -s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~  235 (371)
T d1k8kc_         158 -AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMA  235 (371)
T ss_dssp             -EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTE
T ss_pred             -ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccc
Confidence             5999999999986432                   23456789999999999999999999999999 99999999999


Q ss_pred             EEEEeCCCcc-eeEEEeecCceEEEe
Q 020784          294 LQEECCPSIS-AQSGLWLSSAWLRVL  318 (321)
Q Consensus       294 i~~~~~g~~~-~~~~~s~d~~~la~~  318 (321)
                      +.++...... ..+.|++|+++||..
T Consensus       236 ~~~~~~~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         236 VATLASETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             EEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             eeeeecccccceeeeecCCCCEEEEE
Confidence            9998643333 345788999998864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.7e-28  Score=216.19  Aligned_cols=228  Identities=14%  Similarity=0.157  Sum_probs=177.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCce---eEEee-eecCCceEEEEEecCCCeEEEEeCCCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE---IFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~---~~~~~-~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~  156 (321)
                      ...|...|+||+|+|+|++||+|+++.|+|||+...+.   ..... ..|.+.|..++++++++.+++++       .|+
T Consensus        47 ~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~-------~dg  119 (337)
T d1gxra_          47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-------EAS  119 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-------SSS
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee-------ccc
Confidence            34688899999999999999999987799999875432   11222 12677899999999999998887       689


Q ss_pred             cEEEEeCCCCc--EEEEEeeC-CceeEEEEeCCe--EEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceE
Q 020784          157 KVMIWDDHQSR--CIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       157 ~v~iWD~~~~~--~~~~~~~~-~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~  230 (321)
                      +|++||+....  ....+..+ ..+..+.++++.  ++++. ++.|++|++.++++......+...+..+++++  ++..
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~~~~  197 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTK  197 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence            99999987543  44455444 468888998764  44444 46999999999999888887776665555554  5567


Q ss_pred             EEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEee
Q 020784          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWL  310 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~  310 (321)
                      +++ |+.||.|++||+.+........|...|.+++|+|++.+|++|+.|+. |++||+++++.............+.+++
T Consensus       198 ~~~-~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~i~~v~~s~  275 (337)
T d1gxra_         198 LWT-GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHLHESCVLSLKFAY  275 (337)
T ss_dssp             EEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEECCCSSCEEEEEECT
T ss_pred             ccc-ccccccccccccccceeecccccccceEEEEEcccccccceeccccc-cccccccccccccccccccccceEEECC
Confidence            774 88999999999987765555679999999999999999999999999 9999999999876443222333457788


Q ss_pred             cCceEEEee
Q 020784          311 SSAWLRVLR  319 (321)
Q Consensus       311 d~~~la~~~  319 (321)
                      ++++|+++.
T Consensus       276 ~g~~l~s~s  284 (337)
T d1gxra_         276 CGKWFVSTG  284 (337)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999998753

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.7e-27  Score=214.48  Aligned_cols=227  Identities=13%  Similarity=0.098  Sum_probs=165.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeee-----------------ecCCceEEEEEecCCCeEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF-----------------ERGGGIGVVEMLFRCNILALV  145 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~-----------------~~~~~v~~v~~~~~~~~~~~~  145 (321)
                      .|.+.|+||+|+|||++||+|+++.|+|||+.+++.+.....                 .|...|..++++++++.++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            588899999999999999999988899999988776544321                 145568899999999999888


Q ss_pred             eCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCC--------------------------------------
Q 020784          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--------------------------------------  186 (321)
Q Consensus       146 sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--------------------------------------  186 (321)
                      +       .|+.|++||...++.+..+..+ ..|.++.++++                                      
T Consensus       140 ~-------~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  212 (388)
T d1erja_         140 A-------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  212 (388)
T ss_dssp             E-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             c-------cccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccc
Confidence            7       6799999999888776665532 35555555432                                      


Q ss_pred             ------eEEEEE-CCEEEEEEcCCcEEEEEEeccC-----CCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc-----
Q 020784          187 ------RIIVVL-EQKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----  249 (321)
Q Consensus       187 ------~~~~~~-~~~I~iwd~~~~~~~~~l~~~~-----~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~-----  249 (321)
                            .++++. ++.|++||+.+++.+..+....     ....+.++...+++.+|+ +|+.||.|++||+...     
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~  291 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSD  291 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE-EEETTSEEEEEEC--------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE-EEECCCcEEEEeccCCccccc
Confidence                  222232 3467777776666655553211     112244455556668887 5899999999997532     


Q ss_pred             --------ceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEE--------eecCc
Q 020784          250 --------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGL--------WLSSA  313 (321)
Q Consensus       250 --------~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~--------s~d~~  313 (321)
                              .......|...|++++|+|+|++|++|+.||+ |+|||+++++++.++. +|...+.++        ++++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l~-~H~~~V~~~~~~~~~~~spd~~  369 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYN  369 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCE
T ss_pred             cccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEe-CCCCCEEEEEEecCcccCCCCC
Confidence                    13356679999999999999999999999999 9999999999999995 566554433        45778


Q ss_pred             eEEEee
Q 020784          314 WLRVLR  319 (321)
Q Consensus       314 ~la~~~  319 (321)
                      +|+.+.
T Consensus       370 ~l~s~s  375 (388)
T d1erja_         370 VFATGS  375 (388)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            888764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.2e-27  Score=211.45  Aligned_cols=225  Identities=13%  Similarity=0.075  Sum_probs=181.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      +++.+.+++++|+|+.||.++++.+.+|++++.+....... |.+.|.+++++++++++++++       .|++|+|||+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~~latg~-------~dg~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGD-------VHGNVRIWDT   87 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEEEES
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCCeEeccc-------cCceEeeeee
Confidence            34456689999999999999888899999988776655543 788999999999999998888       6899999999


Q ss_pred             CCCcEE--EEEe-eCCceeEEEEeCCe--EEEEEC---CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeec
Q 020784          164 HQSRCI--GELS-FRSEVRSVKLRRDR--IIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       164 ~~~~~~--~~~~-~~~~v~~v~~~~~~--~~~~~~---~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sG  235 (321)
                      .+++..  ..+. +...|.+++|+++.  ++++++   ..+++|++.+++.++++..|...+..++|+++  +.+++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~--~~~~l~sg  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS--RPFRIISG  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS--SSCEEEEE
T ss_pred             eccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccc--ceeeeccc
Confidence            887643  3444 34589999999863  555554   36999999999888888888776666666654  44433369


Q ss_pred             CCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC------CCcce--eE
Q 020784          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC------PSISA--QS  306 (321)
Q Consensus       236 s~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~------g~~~~--~~  306 (321)
                      +.||.|++||..+.. ...+..|...|++++|+|++++|++|+.||. |+|||+.+++.+.++..      +|...  .+
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            999999999998765 5688899999999999999999999999999 99999999999888753      23333  34


Q ss_pred             EEeecCceEEEee
Q 020784          307 GLWLSSAWLRVLR  319 (321)
Q Consensus       307 ~~s~d~~~la~~~  319 (321)
                      ++++++++|+++.
T Consensus       245 ~~s~~~~~l~tgs  257 (311)
T d1nr0a1         245 TWSPDGTKIASAS  257 (311)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             ccCCCCCEEEEEe
Confidence            6778899998864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.1e-26  Score=200.39  Aligned_cols=230  Identities=10%  Similarity=0.061  Sum_probs=151.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeE--EeeeecCCceEEEEEecCCC-eEEEEeCCCCCCCCCC
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF--RRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~--~~~~~~~~~v~~v~~~~~~~-~~~~~sg~~~~~~~d~  156 (321)
                      ...|.+.|++|+|+|||++||+|+.|+ |+|||++..+...  ...+.|.+.|.++++++++. .+++++       .|+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~-------~d~   79 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-------VQG   79 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-------TTS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc-------ccc
Confidence            467888999999999999999998755 8899997665322  22223788999999988655 455555       579


Q ss_pred             cEEEEeCCCCcEEEEEeeCC-ce-eEEEE--eCCeEEEEE-CCEEEEEEcCCcEE----EEEEeccCCC--CceEEEeeC
Q 020784          157 KVMIWDDHQSRCIGELSFRS-EV-RSVKL--RRDRIIVVL-EQKIFVYNFADLKL----LHQIETIANP--KGLCAVSQG  225 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~-~v-~~v~~--~~~~~~~~~-~~~I~iwd~~~~~~----~~~l~~~~~~--~~~~~~s~~  225 (321)
                      +|++||...+.......... .+ ....+  ....++.+. ++.+++||++....    ......+...  .....+...
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            99999998887666554433 22 22222  234454444 56999999853221    1111111111  111111221


Q ss_pred             C--------------------------------------------CceEEEeecCCCCcEEEEeeCCcc-------eE--
Q 020784          226 V--------------------------------------------GSLVLVCPGLQKGQVRVEHYASKR-------TK--  252 (321)
Q Consensus       226 ~--------------------------------------------d~~~la~sGs~dg~V~i~d~~~~~-------~~--  252 (321)
                      +                                            ++..++ .++.||.+.+|++....       ..  
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~~v~~~~~~~~~~~~~~~~~~  238 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA-CSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE-EEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEE-eecCCCeEEEEEecCCcceeecccccee
Confidence            1                                            122233 24555555555432110       00  


Q ss_pred             -------EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          253 -------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       253 -------~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                             ....|...|++|+|+|++.+|||||.||+ |+|||++++++++++...+....++++++|++|++|.
T Consensus       239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             eeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence                   11346667899999999999999999999 9999999999999997777777889999999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=6e-26  Score=198.88  Aligned_cols=228  Identities=14%  Similarity=0.093  Sum_probs=160.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      +.++|...|++++|+|||++|++|+.|+ |+|||+++++........|.+.|..+++.+++.+++ ++       .|+++
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~-------~d~~v   78 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VS-------WDDHL   78 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EE-------TTTEE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-cc-------ceeeE
Confidence            4578999999999999999999998866 889999988766544322677899999998876544 44       36888


Q ss_pred             EEEeCCCCcE-----E------------------------------------EEEeeCCceeEEEEeCC--eEEEEE-CC
Q 020784          159 MIWDDHQSRC-----I------------------------------------GELSFRSEVRSVKLRRD--RIIVVL-EQ  194 (321)
Q Consensus       159 ~iWD~~~~~~-----~------------------------------------~~~~~~~~v~~v~~~~~--~~~~~~-~~  194 (321)
                      ++|+......     +                                    ........+.+++++++  .+++++ ++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9998543210     0                                    00111223455666654  344544 47


Q ss_pred             EEEEEEcCCcEEEEE-EeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce----EEeeccccceeEEEECCC
Q 020784          195 KIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQD  269 (321)
Q Consensus       195 ~I~iwd~~~~~~~~~-l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~----~~l~~H~~~V~~vafspd  269 (321)
                      .|++||+++++.... ...|...+  .++...+++.+++ +|+.||.|++|+...+..    ..+.+|...|++++|+|+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~-~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  235 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEI--TSVAFSNNGAFLV-ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD  235 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCE--EEEEECTTSSEEE-EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccc--ccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            999999987765443 23344444  4444555667887 489999999999875432    357789999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCcEEEEE-eCCCcce--eEEEeecCceEEEee
Q 020784          270 GQLLATSSTKGTLVRIFNTLDGTLLQEE-CCPSISA--QSGLWLSSAWLRVLR  319 (321)
Q Consensus       270 g~~las~S~Dgt~IrIWd~~tg~~i~~~-~~g~~~~--~~~~s~d~~~la~~~  319 (321)
                      |.+||+|+.||+ |+|||+++++....+ ..++...  ...++.++++|+.+.
T Consensus       236 ~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s  287 (299)
T d1nr0a2         236 NVRLATGSLDNS-VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG  287 (299)
T ss_dssp             SSEEEEEETTSC-EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE
T ss_pred             ccceEEEcCCCE-EEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe
Confidence            999999999999 999999987644333 2233322  224567788887653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.8e-25  Score=196.94  Aligned_cols=227  Identities=16%  Similarity=0.179  Sum_probs=168.7

Q ss_pred             CCCeEEEEEcC--CCCEEEEEcCCc-EEEEEecCCceeEEee------e-ecCCceEEEEEecCCCeEEEEeCCCCCCCC
Q 020784           85 PPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRRD------F-ERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (321)
Q Consensus        85 ~~~V~~v~fs~--dg~~lasg~~~g-v~vw~~~~~~~~~~~~------~-~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~  154 (321)
                      ...|++++|+|  +|++||+|+.|+ |+|||+...+......      + .|.+.|..+++++++..+++++++     .
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~-----~  137 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-----R  137 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-----S
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc-----c
Confidence            45899999997  678999998765 8899986543211111      1 156789999999999999888866     4


Q ss_pred             CCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCCe---EEEEE-CCEEEEEEcCCcEEEEEEeccCC-CCceEEEeeCCC-
Q 020784          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVG-  227 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~---~~~~~-~~~I~iwd~~~~~~~~~l~~~~~-~~~~~~~s~~~d-  227 (321)
                      ++.+++|+.++++.+..+..+ ..|.++.|+++.   ++.+. ++.|++||+..++....+..+.. ...+.++.++++ 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc
Confidence            688999999999998888754 579999998753   44444 57999999999888877765422 223344444443 


Q ss_pred             ceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEEC---CCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc
Q 020784          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALT---QDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS  303 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafs---pdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~  303 (321)
                      +.+++ +|+.||.|++||..++. +.++.+|...|.++.|+   ++|++|+++|.|++ |+|||++++++++++......
T Consensus       218 ~~~l~-s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~  295 (325)
T d1pgua1         218 GEFVI-TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQQ  295 (325)
T ss_dssp             CCEEE-EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEEECCTTC
T ss_pred             ceecc-ccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEEEecCCc
Confidence            35666 58999999999988765 56899999888777776   78999999999999 999999999999998644332


Q ss_pred             -e--eEEEeecC-ceEEEe
Q 020784          304 -A--QSGLWLSS-AWLRVL  318 (321)
Q Consensus       304 -~--~~~~s~d~-~~la~~  318 (321)
                       .  .+.+.+++ .+|+.+
T Consensus       296 ~~~~~~~~~~~~~~~l~s~  314 (325)
T d1pgua1         296 LGNQQVGVVATGNGRIISL  314 (325)
T ss_dssp             GGGCEEEEEEEETTEEEEE
T ss_pred             ccCeEEEEEECCCCEEEEE
Confidence             1  23455443 355443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5.6e-25  Score=191.27  Aligned_cols=194  Identities=13%  Similarity=0.153  Sum_probs=161.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..|...+.++.|++++.+|++++.++ +++||+.+.+....... |...+..+++.++++.+++++       .|+.|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-------~d~~v~~  169 (317)
T d1vyhc1          98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTLIASCS-------NDQTVRV  169 (317)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc-CCCcceeeecccCCCEEEEEe-------CCCeEEE
Confidence            56778999999999999999988866 77999999887666554 577888999999999988887       6799999


Q ss_pred             EeCCCCcEEEEEeeC-CceeEEEEeCC----------------------eEEEEE-CCEEEEEEcCCcEEEEEEeccCCC
Q 020784          161 WDDHQSRCIGELSFR-SEVRSVKLRRD----------------------RIIVVL-EQKIFVYNFADLKLLHQIETIANP  216 (321)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~----------------------~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~  216 (321)
                      ||..+++.+..+..+ ..+.++.+.++                      .+.++. ++.|++||+++++.+.++..|...
T Consensus       170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  249 (317)
T d1vyhc1         170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW  249 (317)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC
Confidence            999999988777644 46777777643                      234443 579999999999999999988776


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                      +..+++++  ++.+|+ +|+.||.|++||+.++. +.++.+|.+.|++|+|+|++++|||||.||+ |+|||
T Consensus       250 v~~~~~~~--~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~-i~iWd  317 (317)
T d1vyhc1         250 VRGVLFHS--GGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWE  317 (317)
T ss_dssp             EEEEEECS--SSSCEE-EEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE-EEEEC
T ss_pred             EEEEEECC--CCCEEE-EEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEeC
Confidence            65566555  557777 48999999999998755 7799999999999999999999999999999 99997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.2e-23  Score=185.71  Aligned_cols=197  Identities=15%  Similarity=0.226  Sum_probs=148.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCcee--EEeeee---------------------------------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI--FRRDFE---------------------------------  125 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~--~~~~~~---------------------------------  125 (321)
                      ..|...|++++|+|+|++|++|+.++ +++|+.......  ....+.                                 
T Consensus        94 ~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (340)
T d1tbga_          94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTT
T ss_pred             ecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence            45778999999999999999998865 779986432110  000000                                 


Q ss_pred             ---------cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC-CceeEEEEeCC--eEEEEE-
Q 020784          126 ---------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-  192 (321)
Q Consensus       126 ---------~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~-  192 (321)
                               +...+......+....++++.       .|+.|++||+++++.+..+..+ ..|.+++|+++  .+++++ 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~  246 (340)
T d1tbga_         174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGA-------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccceeEeeeccccccceeEEee-------cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC
Confidence                     112223333333444444444       5799999999999998888754 57999999875  455554 


Q ss_pred             CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCC
Q 020784          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQ  271 (321)
Q Consensus       193 ~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~  271 (321)
                      ++.|++||++..+.+..+........+.++...+++.+|+ +|+.||.|++||+.... +.++.+|.+.|++|+|+|+|.
T Consensus       247 d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCeEEEEeecccccccccccccccCceEEEEECCCCCEEE-EEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence            5699999999999888886655555566666666778888 49999999999987655 678999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEE
Q 020784          272 LLATSSTKGTLVRIFN  287 (321)
Q Consensus       272 ~las~S~Dgt~IrIWd  287 (321)
                      +|||||.||+ |+|||
T Consensus       326 ~l~s~s~Dg~-v~iWd  340 (340)
T d1tbga_         326 AVATGSWDSF-LKIWN  340 (340)
T ss_dssp             CEEEEETTSC-EEEEC
T ss_pred             EEEEEccCCE-EEEeC
Confidence            9999999999 99997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-23  Score=192.87  Aligned_cols=135  Identities=13%  Similarity=0.135  Sum_probs=102.4

Q ss_pred             ceeEEEEeCCeEEEE-E-CCEEEEEEcCCcEEEEEEec------cCCCCceEEEeeCCCceEEEeecCCCC---cEEEEe
Q 020784          177 EVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET------IANPKGLCAVSQGVGSLVLVCPGLQKG---QVRVEH  245 (321)
Q Consensus       177 ~v~~v~~~~~~~~~~-~-~~~I~iwd~~~~~~~~~l~~------~~~~~~~~~~s~~~d~~~la~sGs~dg---~V~i~d  245 (321)
                      .+.+++|+++.++++ + |++|++||+.+++.+..+..      |..++..++|+  ||+.+|+ +|+.|+   .|++||
T Consensus       186 ~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--pdg~~l~-sgs~D~t~~~i~lwd  262 (393)
T d1sq9a_         186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS--PQGSLLA-IAHDSNSFGCITLYE  262 (393)
T ss_dssp             CCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC--SSTTEEE-EEEEETTEEEEEEEE
T ss_pred             cEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc--cccceee-eecCCCCcceeeecc
Confidence            477899998865544 3 46999999999988877653      44444445554  5668888 488776   488899


Q ss_pred             eCCcc-eEEe-------------eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee------
Q 020784          246 YASKR-TKFI-------------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ------  305 (321)
Q Consensus       246 ~~~~~-~~~l-------------~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~------  305 (321)
                      ++++. +.++             .+|.+.|++|+|+|||++|||||.|++ |||||+++|+++++++ ||...+      
T Consensus       263 ~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~-v~vWd~~~g~~~~~l~-gH~~~v~~~~~~  340 (393)
T d1sq9a_         263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLN-MHCDDIEIEEDI  340 (393)
T ss_dssp             TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEE-CCGGGCSSGGGC
T ss_pred             cccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE-EEEEECCCCCEEEEEC-CcCCcccCCccE
Confidence            87654 2333             489999999999999999999999999 9999999999999995 665322      


Q ss_pred             EEEeecCceEE
Q 020784          306 SGLWLSSAWLR  316 (321)
Q Consensus       306 ~~~s~d~~~la  316 (321)
                      +.+++++..++
T Consensus       341 ~~~~~~~~~~~  351 (393)
T d1sq9a_         341 LAVDEHGDSLA  351 (393)
T ss_dssp             CCBCTTSCBCS
T ss_pred             EEECCCCCEEE
Confidence            35666665554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-22  Score=178.90  Aligned_cols=221  Identities=13%  Similarity=0.191  Sum_probs=153.3

Q ss_pred             cCCCCCCe-EEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           81 SSSPPPTL-LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        81 ~~~~~~~V-~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .++|...| +|++|  ||++||+|+.|+ |+|||+.+++.+..... |.+.|..++++++ +.+++++       .|++|
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~-~~l~s~s-------~D~~i   76 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG-GILVSGS-------TDRTV   76 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETT-TEEEEEE-------TTCCE
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCC-CEEEEEe-------ccccc
Confidence            35677765 66655  688999999866 88999999988777665 7889999999864 5666666       57888


Q ss_pred             EEEeCCCCcEEEEEeeCCc---eeEEEEeCC-------------------------------------------------
Q 020784          159 MIWDDHQSRCIGELSFRSE---VRSVKLRRD-------------------------------------------------  186 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~---v~~v~~~~~-------------------------------------------------  186 (321)
                      ++|+....+..........   .....+.++                                                 
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            8888877765544332211   111222222                                                 


Q ss_pred             ----------------eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc
Q 020784          187 ----------------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (321)
Q Consensus       187 ----------------~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~  249 (321)
                                      .++.+. ++.|++||+.+++.+..+..+........+++  ++..++ +|+.||.|++|+..++
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH--ERKRCI-SASMDTTIRIWDLENG  233 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TTTEEE-EEETTSCEEEEETTTC
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc--cceeee-cccccceEEeeecccc
Confidence                            222222 23555666655555555554443333344444  446666 4889999999999876


Q ss_pred             c-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          250 R-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       250 ~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      . +..+.+|...|++++|+  +++|++|+.||+ |+|||+++++....+..........++.++++|+.+
T Consensus       234 ~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  300 (355)
T d1nexb2         234 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG  300 (355)
T ss_dssp             CEEEEECCCSSCCCEEEEC--SSEEEEECTTSE-EEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE
T ss_pred             ccccccccccccccccccc--cceeeeeecccc-cccccccccceecccccCCceEEEEEcCCCCEEEEE
Confidence            5 56899999999999997  468999999999 999999999887776554444455778888887764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.9e-23  Score=176.13  Aligned_cols=216  Identities=11%  Similarity=0.212  Sum_probs=159.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      .|...|+|++|  ||++||+|+.|+ |+|||+++++.+..... |.+.|.++  .++++.+++++       .|+.|++|
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v--~~~~~~l~s~s-------~D~~i~~~   80 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCL--QYDERVIITGS-------SDSTVRVW   80 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEE--ECCSSEEEEEE-------TTSCEEEE
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeee--ecccceeeccc-------cccccccc
Confidence            45568998765  799999999866 88999999988766654 67777665  46788888777       67999999


Q ss_pred             eCCCCcEEEEEee--------------------------------------------CCceeEEEEeCCeEEEEE-CCEE
Q 020784          162 DDHQSRCIGELSF--------------------------------------------RSEVRSVKLRRDRIIVVL-EQKI  196 (321)
Q Consensus       162 D~~~~~~~~~~~~--------------------------------------------~~~v~~v~~~~~~~~~~~-~~~I  196 (321)
                      |+..+........                                            ...+..+.+....+..++ ++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i  160 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  160 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             ccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCce
Confidence            9877654432211                                            112333444444555554 5699


Q ss_pred             EEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEE
Q 020784          197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLAT  275 (321)
Q Consensus       197 ~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las  275 (321)
                      ++||+++++.+..+..+...  +..+.+++  ..++ +|+.||.|++||+.+.. +..+.+|...|.++  ++++.+|++
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~--v~~~~~~~--~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s  233 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRG--IACLQYRD--RLVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVS  233 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSC--EEEEEEET--TEEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEE--ECCSSEEEE
T ss_pred             eeecCCCCcEEEEEcccccc--cccccCCC--CeEE-EecCCCEEEEEecccceeeeeecccceeeeec--cccceEEEE
Confidence            99999999999998876544  44555544  4565 48999999999998765 56788888888764  567889999


Q ss_pred             EeCCCcEEEEEEcCC---------CcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          276 SSTKGTLVRIFNTLD---------GTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       276 ~S~Dgt~IrIWd~~t---------g~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      |+.||+ |+|||+.+         ..+++++ .+|...+.++++|+++|+.+.
T Consensus       234 g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~-~~H~~~V~~v~~d~~~l~s~s  284 (293)
T d1p22a2         234 GAYDGK-IKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQFDEFQIVSSS  284 (293)
T ss_dssp             EETTSC-EEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEECSSCEEECC
T ss_pred             EcCCCE-EEEEECCCCccccccCCceeeEEe-cCCCCCEEEEEEcCCEEEEEe
Confidence            999999 99999754         3567777 577777778889999998764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.6e-22  Score=180.37  Aligned_cols=222  Identities=11%  Similarity=0.084  Sum_probs=158.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEE--EEEecCCce--eEEeeeecCCceEEEEEecC--CCeEEEEeCCCCCCCCCCcEEE
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFR--IYNCDPFRE--IFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~--vw~~~~~~~--~~~~~~~~~~~v~~v~~~~~--~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .+++++|+|+|+.||.++.+.+.  .|+......  .......+...+.++++++.  +..+++++       .|++|+|
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs-------~Dg~i~i   91 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-------ESGKVIV   91 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-------TTSEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe-------CCCCEEE
Confidence            46789999999999998876654  454333222  22222102357999999874  45565555       6899999


Q ss_pred             EeCCCCcEEEE--------Ee-eCCceeEEEEeCC--eEEEEE---CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCC
Q 020784          161 WDDHQSRCIGE--------LS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (321)
Q Consensus       161 WD~~~~~~~~~--------~~-~~~~v~~v~~~~~--~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~  226 (321)
                      ||+..++....        +. +...|.+++|+++  .++++.   ++.+++|+..+++.+..+..|...+..++++++.
T Consensus        92 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  171 (325)
T d1pgua1          92 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR  171 (325)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS
T ss_pred             eeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccc
Confidence            99865432211        11 3357899999875  455554   3479999999999999998887777677776654


Q ss_pred             CceEEEeecCCCCcEEEEeeCCcce-E---EeeccccceeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCC
Q 020784          227 GSLVLVCPGLQKGQVRVEHYASKRT-K---FIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEECCPS  301 (321)
Q Consensus       227 d~~~la~sGs~dg~V~i~d~~~~~~-~---~l~~H~~~V~~vafspd-g~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~  301 (321)
                        ..++++++.||.|++|+...... .   .+.+|...|++++|+|+ +.+||+|+.||+ |+|||+++++++++++ ++
T Consensus       172 --~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~-~~  247 (325)
T d1pgua1         172 --PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIE-DD  247 (325)
T ss_dssp             --SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECC-BT
T ss_pred             --cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeecccccccccc-cc
Confidence              33333588999999999876442 2   34578889999999997 689999999999 9999999999999985 34


Q ss_pred             ccee--EEEe---ecCceEEEee
Q 020784          302 ISAQ--SGLW---LSSAWLRVLR  319 (321)
Q Consensus       302 ~~~~--~~~s---~d~~~la~~~  319 (321)
                      ....  ..++   +||++|+.+.
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s  270 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVG  270 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEE
T ss_pred             ccccccceeeeeccCCCEEEEEe
Confidence            4322  2333   6889988764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.3e-22  Score=181.65  Aligned_cols=195  Identities=14%  Similarity=0.180  Sum_probs=144.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEE-ecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|...|.+++|++++..+++|+.++ +++||..+.........  ......+.+ ..+++.+++++       .|+.|+
T Consensus       160 ~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-------~d~~i~  230 (388)
T d1erja_         160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAAGS-------LDRAVR  230 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSTTCCEEEEEE-------TTSCEE
T ss_pred             ccccccccccccccccccccccccceeeeeeecccccccccccc--ccccccccccCCCCCeEEEEc-------CCCeEE
Confidence            45778999999999999999988865 78999998877655553  334444444 34667777766       679999


Q ss_pred             EEeCCCCcEEEEEe--------eCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEE------------EEeccCCC
Q 020784          160 IWDDHQSRCIGELS--------FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLH------------QIETIANP  216 (321)
Q Consensus       160 iWD~~~~~~~~~~~--------~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~------------~l~~~~~~  216 (321)
                      +||.+++..+..+.        +...|.++.|+++  .+++++ ++.|++||+++++...            ....|...
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
T d1erja_         231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF  310 (388)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred             EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce
Confidence            99999988776653        2347999999875  455554 5799999997654432            22333333


Q ss_pred             CceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEE------CCCCCEEEEEeCCCcEEEEEEcC
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFAL------TQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vaf------spdg~~las~S~Dgt~IrIWd~~  289 (321)
                        +.++...+++.+|+ +|+.||.|++||+.++. +.++++|.+.|+++++      +|+|.+|||||.||+ |||||++
T Consensus       311 --v~~~~~s~~~~~l~-sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~-I~iW~~~  386 (388)
T d1erja_         311 --VLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK-ARIWKYK  386 (388)
T ss_dssp             --EEEEEECGGGCEEE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE-EEEEEEE
T ss_pred             --EEEEEECCCCCEEE-EEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE-EEEEeee
Confidence              34444455668888 59999999999998765 6789999999999975      678999999999999 9999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.6e-22  Score=181.98  Aligned_cols=197  Identities=9%  Similarity=-0.038  Sum_probs=147.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..|...|++++|+|+|++|++|+.|+ |+|||+++........+. |...+.++++.++++.+++++       .|++|+
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-------~d~~i~  120 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-------GSRVIS  120 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-------TTSSEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeec-------ccCcce
Confidence            46888999999999999999998765 889999887654443331 567899999999999998888       579999


Q ss_pred             EEeCCCCcEEEEEe-----eCCceeEEEEeCCe--EEEEE-CCEEEEEEcCCc------------------EEEEEEecc
Q 020784          160 IWDDHQSRCIGELS-----FRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADL------------------KLLHQIETI  213 (321)
Q Consensus       160 iWD~~~~~~~~~~~-----~~~~v~~v~~~~~~--~~~~~-~~~I~iwd~~~~------------------~~~~~l~~~  213 (321)
                      +|++........+.     +...|.++.|+++.  +++++ +++|++||+...                  +.+.....|
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T d1k8kc_         121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  200 (371)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             eeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence            99987654322221     34579999999863  44444 579999998532                  334444444


Q ss_pred             CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 020784          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~t  290 (321)
                      ...+  .++++++++..|+ +|+.||.|++||...+. +..+..|..+|++|+|+|+|++||+|+ |+. +++|+...
T Consensus       201 ~~~v--~~~~~s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~-~~~~~~~~  273 (371)
T d1k8kc_         201 CGWV--HGVCFSANGSRVA-WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCF-PVLFTYDS  273 (371)
T ss_dssp             SSCE--EEEEECSSSSEEE-EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSS-CEEEEEET
T ss_pred             cCcE--EEEEeeccccccc-ccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCc-eEEEEeeC
Confidence            4444  4444455667887 48899999999988755 668999999999999999999998776 666 66765543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-21  Score=168.84  Aligned_cols=219  Identities=16%  Similarity=0.215  Sum_probs=166.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .++|.+.|.+ +|+++|++||+|+.|+ |+|||+.+++.+..... |.+.|..+++.  ++.+++++       .|++++
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~--~~~l~s~s-------~D~~~~   80 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGS-------TDRTLK   80 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEE-------TTSCEE
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeC--CCccccce-------eccccc
Confidence            4688888865 3677899999999866 88999999988766654 67788887765  45777776       689999


Q ss_pred             EEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          160 IWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +|+.............. .+............+. +..+.+|+..+++....+......  ........  ..++ .|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~-~~~~  155 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQYDG--RRVV-SGAY  155 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC--EEEEEECS--SCEE-EEET
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccccc--ceeecccc--ceee-eecC
Confidence            99998877665554433 5566666666666665 569999999998887776654332  22233322  3444 3788


Q ss_pred             CCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       238 dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      ||.|++|+..... +..+.+|...+..+.+  ++.+|++|+.||+ |++||++++++++++ .++.....++++++++|+
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~-i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~l~  231 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTL-TGHQSLTSGMELKDNILV  231 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEE-CCCCSCEEEEEEETTEEE
T ss_pred             CCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCe-EEEeecccceeeeEe-cccccceeEEecCCCEEE
Confidence            9999999987655 5688889877776655  6889999999999 999999999999888 467777778899999998


Q ss_pred             Eee
Q 020784          317 VLR  319 (321)
Q Consensus       317 ~~~  319 (321)
                      ++.
T Consensus       232 s~s  234 (342)
T d2ovrb2         232 SGN  234 (342)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.6e-21  Score=169.72  Aligned_cols=219  Identities=13%  Similarity=0.176  Sum_probs=147.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEE--EEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGV--VEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~--v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..|.+.|++++|++++ +|++|+. +.+++|+....+....... .......  .....+...+++++       .|+.|
T Consensus        50 ~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~d~~i  120 (355)
T d1nexb2          50 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGS-------RDNTL  120 (355)
T ss_dssp             ECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEEEEETTEEEEEEEE-------TTSEE
T ss_pred             ECCCCCEEEEEEcCCC-EEEEEeccccccccccccccccccccc-ccccccccccccccccceeeeec-------CCCcE
Confidence            4688899999999976 6777766 5588999988766544432 1222222  22233444444444       34556


Q ss_pred             EEEeCC---------------------------------------------------------------CCcEEEEEee-
Q 020784          159 MIWDDH---------------------------------------------------------------QSRCIGELSF-  174 (321)
Q Consensus       159 ~iWD~~---------------------------------------------------------------~~~~~~~~~~-  174 (321)
                      ++||+.                                                               +++.+..... 
T Consensus       121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~  200 (355)
T d1nexb2         121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  200 (355)
T ss_dssp             EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecc
Confidence            666544                                                               3333332221 


Q ss_pred             CCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcce
Q 020784          175 RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (321)
Q Consensus       175 ~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~  251 (321)
                      ...+.++.+++.  .++++. ++.|++||+++++.+..+..|...+..++++  +  .+++ +|+.||.|++||.+... 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~--~~l~-~~~~dg~i~iwd~~~~~-  274 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D--KFLV-SAAADGSIRGWDANDYS-  274 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--S--SEEE-EECTTSEEEEEETTTCC-
T ss_pred             ccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--c--ceee-eeecccccccccccccc-
Confidence            123445555543  344444 4799999999999999999988777666554  3  4666 48999999999987653 


Q ss_pred             EEeeccccceeEEE-ECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEE
Q 020784          252 KFIMAHDSRIACFA-LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       252 ~~l~~H~~~V~~va-fspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                      ..+..|...+.+++ |++++.+|++|+ ||+ |+|||+++|++++....+|...+.++++++..+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~-i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~  339 (355)
T d1nexb2         275 RKFSYHHTNLSAITTFYVSDNILVSGS-ENQ-FNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA  339 (355)
T ss_dssp             EEEEEECTTCCCCCEEEECSSEEEEEE-TTE-EEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEE
T ss_pred             eecccccCCceEEEEEcCCCCEEEEEe-CCE-EEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEE
Confidence            45667777777764 567888887776 888 99999999999876656777777777777766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=8e-21  Score=164.96  Aligned_cols=213  Identities=15%  Similarity=0.170  Sum_probs=140.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .|.+.|.+++|++++.++.+|.++.+++|++...      .+  ...+..+.+..++..++. +       .++.+.+|+
T Consensus        44 ~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~------~~--~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~  107 (287)
T d1pgua2          44 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH------EF--GSQPKVASANNDGFTAVL-T-------NDDDLLILQ  107 (287)
T ss_dssp             CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE------EC--SSCEEEEEECSSSEEEEE-E-------TTSEEEEEE
T ss_pred             CCCCCEEEEEecCCCeEEEEeecccccccccccc------cc--ccceeeeeeccCCceEEE-e-------ecccceeee
Confidence            4445566666655544333333344556654321      11  233444444444333332 2       246677888


Q ss_pred             CCCCcEEEEEeeCCceeEEEEeCCeEEEEEC--CEEEEEEcCCcEEEEEEec-cCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVLE--QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~--~~I~iwd~~~~~~~~~l~~-~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      ..+++.+..+.....+.++..+.+.++++..  +.|++|++.+.+....+.. +...  +.++++++++.+|+ +|+.||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~-~g~~dg  184 (287)
T d1pgua2         108 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK--PSYISISPSETYIA-AGDVMG  184 (287)
T ss_dssp             TTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC--EEEEEECTTSSEEE-EEETTS
T ss_pred             ccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCc--eeEEEeccCccccc-cccccc
Confidence            8888888778777777777778778877764  4799999987766555543 2333  44445555668888 499999


Q ss_pred             cEEEEeeCCcceE--EeeccccceeEEEECCC----------CCEEEEEeCCCcEEEEEEcCCC-cEEEEEeCCCcceeE
Q 020784          240 QVRVEHYASKRTK--FIMAHDSRIACFALTQD----------GQLLATSSTKGTLVRIFNTLDG-TLLQEECCPSISAQS  306 (321)
Q Consensus       240 ~V~i~d~~~~~~~--~l~~H~~~V~~vafspd----------g~~las~S~Dgt~IrIWd~~tg-~~i~~~~~g~~~~~~  306 (321)
                      .|++||.......  .+.+|...|++++|+|+          +.+|||||.|++ |+|||++++ +++..+ .+|...+.
T Consensus       185 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~-~~h~~~V~  262 (287)
T d1pgua2         185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKAL-NAHKDGVN  262 (287)
T ss_dssp             CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEET-TSSTTCEE
T ss_pred             cccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEe-CCCCCCeE
Confidence            9999999876643  46789999999999875          468999999999 999999874 455544 67766554


Q ss_pred             --EEeecCceEE
Q 020784          307 --GLWLSSAWLR  316 (321)
Q Consensus       307 --~~s~d~~~la  316 (321)
                        .++++++++.
T Consensus       263 ~v~~~~~~~l~s  274 (287)
T d1pgua2         263 NLLWETPSTLVS  274 (287)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEECCCCEEEE
Confidence              5566665443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-20  Score=163.26  Aligned_cols=219  Identities=13%  Similarity=0.181  Sum_probs=153.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEE---------------------------
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVV---------------------------  133 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v---------------------------  133 (321)
                      ..|.+.|++++|+++  +|++|+.++ +++|+............ +...+...                           
T Consensus        54 ~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  130 (342)
T d2ovrb2          54 VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL  130 (342)
T ss_dssp             CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEE
T ss_pred             eCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc-cceeEeeeecccccccccccceeEEEeecccccce
Confidence            568889999999975  888888755 77998765543322221 11111111                           


Q ss_pred             -----------EEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE-CCEEEEEE
Q 020784          134 -----------EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL-EQKIFVYN  200 (321)
Q Consensus       134 -----------~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~-~~~I~iwd  200 (321)
                                 ........++..+       .|+.|++||......+..+..+. .+..+.+.+..+++++ ++.|++||
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         131 HVLMGHVAAVRCVQYDGRRVVSGA-------YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             EEEECCSSCEEEEEECSSCEEEEE-------TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             eeeecccccceeeccccceeeeec-------CCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEee
Confidence                       1111222333333       56899999999888877776543 5667777788877775 57999999


Q ss_pred             cCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeec---cccceeEEEECCCCCEEEEE
Q 020784          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA---HDSRIACFALTQDGQLLATS  276 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~---H~~~V~~vafspdg~~las~  276 (321)
                      ++.++.++.+..|...  +.++++++  .+++ +|+.||.|++|+..... ...+..   |...+.+++++  +.+|++|
T Consensus       204 ~~~~~~~~~~~~~~~~--v~~~~~~~--~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~  276 (342)
T d2ovrb2         204 VETGNCIHTLTGHQSL--TSGMELKD--NILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS  276 (342)
T ss_dssp             TTTCCEEEEECCCCSC--EEEEEEET--TEEE-EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred             cccceeeeEecccccc--eeEEecCC--CEEE-EEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEE
Confidence            9999999998887654  45555554  4666 58999999999987654 445543   56677777775  5699999


Q ss_pred             eCCCcEEEEEEcCCCcEEEEEeC----CCccee--EEEeecCceEEEe
Q 020784          277 STKGTLVRIFNTLDGTLLQEECC----PSISAQ--SGLWLSSAWLRVL  318 (321)
Q Consensus       277 S~Dgt~IrIWd~~tg~~i~~~~~----g~~~~~--~~~s~d~~~la~~  318 (321)
                      +.||+ |||||+++|++++++..    ++...+  +++++++.+||++
T Consensus       277 s~Dg~-i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g  323 (342)
T d2ovrb2         277 SDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG  323 (342)
T ss_dssp             ETTSE-EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             cCCCE-EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEE
Confidence            99999 99999999999998853    333333  4667787888875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.5e-20  Score=158.89  Aligned_cols=188  Identities=11%  Similarity=0.215  Sum_probs=136.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeee----------------------------------
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE----------------------------------  125 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~----------------------------------  125 (321)
                      ...|.+.|++++|  ++++|++|+.|+ +++|++............                                  
T Consensus        51 l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (293)
T d1p22a2          51 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI  128 (293)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred             EecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccc
Confidence            3568889999987  678999998866 889998665443222210                                  


Q ss_pred             --------cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCC-ceeEEEEeCCeEEEEE-CCE
Q 020784          126 --------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL-EQK  195 (321)
Q Consensus       126 --------~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~-~~~  195 (321)
                              |...+.  ...+....+++.+       .|+.|++||.++++.+..+..+. .+..+.+++..++.+. ++.
T Consensus       129 ~~~~~~~~~~~~v~--~~~~~~~~~~~~s-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  199 (293)
T d1p22a2         129 TLRRVLVGHRAAVN--VVDFDDKYIVSAS-------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT  199 (293)
T ss_dssp             EEEEEECCCSSCEE--EEEEETTEEEEEE-------TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred             cccccccccccccc--cceeccccccccc-------CCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCE
Confidence                    011111  1112223333333       57999999999999888877554 6788888888877775 579


Q ss_pred             EEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCC----------cceEEeeccccceeEEE
Q 020784          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----------KRTKFIMAHDSRIACFA  265 (321)
Q Consensus       196 I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~----------~~~~~l~~H~~~V~~va  265 (321)
                      |++||+++.+.+..+..+...  +..++.+  +.+|+ +|+.||.|++||+..          ..+.++.+|.+.|++|+
T Consensus       200 i~i~d~~~~~~~~~~~~~~~~--v~~~~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~  274 (293)
T d1p22a2         200 IRLWDIECGACLRVLEGHEEL--VRCIRFD--NKRIV-SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  274 (293)
T ss_dssp             EEEEETTTCCEEEEECCCSSC--EEEEECC--SSEEE-EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             EEEEecccceeeeeeccccee--eeecccc--ceEEE-EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE
Confidence            999999999998888776543  3444544  36676 589999999999642          23568899999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEE
Q 020784          266 LTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       266 fspdg~~las~S~Dgt~IrIWd  287 (321)
                      |+  +.+|||||.||+ |||||
T Consensus       275 ~d--~~~l~s~s~Dg~-i~iWD  293 (293)
T d1p22a2         275 FD--EFQIVSSSHDDT-ILIWD  293 (293)
T ss_dssp             EC--SSCEEECCSSSE-EEEEC
T ss_pred             Ec--CCEEEEEecCCE-EEEeC
Confidence            94  678999999999 99997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=4.9e-20  Score=160.68  Aligned_cols=190  Identities=14%  Similarity=0.132  Sum_probs=139.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      .+...+.+++|+++|++++++.++.+++|+....   ....  ....+.+++++++++.+++++       .|+.|++||
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~---~~~~--~~~~~~~~~~s~~~~~l~~g~-------~dg~i~~~d  164 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL---TEVP--ISYNSSCVALSNDKQFVAVGG-------QDSKVHVYK  164 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE---EEEE--CSSCEEEEEECTTSCEEEEEE-------TTSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccc---cccc--ccccccccccccccccccccc-------ccccccccc
Confidence            4556899999999999999999999999985422   1222  256788889999999888877       679999999


Q ss_pred             CCCCcEEE--EEeeCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcEEEEE---EeccCCCCceEEEeeCCCceEEEee
Q 020784          163 DHQSRCIG--ELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQ---IETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       163 ~~~~~~~~--~~~~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~~~~~---l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +++++...  ...+...|.+++|+++  .++++. ++.|++||+.++..+..   +..|..++  .++.+.+++.+|+ +
T Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~-s  241 (299)
T d1nr0a2         165 LSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV--ACVSWSPDNVRLA-T  241 (299)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE--EEEEECTTSSEEE-E
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccceE-E
Confidence            98876543  3455678999999875  345554 46999999977655433   33344444  4444555668888 5


Q ss_pred             cCCCCcEEEEeeCCcc---eEEeeccc-cceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          235 GLQKGQVRVEHYASKR---TKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~~---~~~l~~H~-~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      |+.||.|++||+....   ......|. ..|.+++| +++.+|+|||.||+ |||||+.
T Consensus       242 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~-i~iWdl~  298 (299)
T d1nr0a2         242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSN-IKFWNVP  298 (299)
T ss_dssp             EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSC-EEEEECC
T ss_pred             EcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCE-EEEEecc
Confidence            9999999999987643   23333444 55666654 56789999999999 9999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.5e-20  Score=159.57  Aligned_cols=199  Identities=8%  Similarity=0.080  Sum_probs=145.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+|..+|++++|+|    |++|+.|| |++||..+...    .  |...|..+.+..+ ..+++++       .|++|+
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~----~--h~~~V~~~~~~~~-~~~~s~s-------~D~~v~   70 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ----D--HSNLIVSLDNSKA-QEYSSIS-------WDDTLK   70 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC----C--CCSCEEEEECCST-TCCEEEE-------TTTEEE
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC----C--CCCCEEEEEecCC-CeEEEEe-------eccccc
Confidence            367999999999997    88888765 88999765421    2  5677888877654 4456665       579999


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCCeEE--EEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRII--VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      +||...      .++...+..+.++++...  ++.++.+.+|+..+++.++.+....   ...++++++  ..+++.+..
T Consensus        71 ~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~v~~~~  139 (287)
T d1pgua2          71 VNGITK------HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQ--NYVAVGLEE  139 (287)
T ss_dssp             ETTEEE------EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECS--SEEEEEETT
T ss_pred             cccccc------cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccC--cceeeeccc
Confidence            999753      344556777888776433  3345799999999999888877543   355667654  455544555


Q ss_pred             CCcEEEEeeCCcce-EEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEe
Q 020784          238 KGQVRVEHYASKRT-KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLW  309 (321)
Q Consensus       238 dg~V~i~d~~~~~~-~~l-~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s  309 (321)
                      ++.|++|++..... ..+ ..|...|++|+|+|+|.+||+|+.||. |+|||+.+++.......+|...+.+++
T Consensus       140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~h~~~v~~~~  212 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWAFRTSKINAIS  212 (287)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSCCCSSCEEEEE
T ss_pred             cceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeecccccccccccccccccceee
Confidence            66899999765432 333 458889999999999999999999999 999999999987655456665555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=2.9e-19  Score=158.67  Aligned_cols=201  Identities=12%  Similarity=0.068  Sum_probs=141.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCc--EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           82 SSPPPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasg~-~~g--v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      ..|...|++++|+|||++|++++ +++  +++||.++++......  |.+.+..++++++++.+++++       .++.+
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~-------~~~~~  109 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE--NLGNVFAMGVDRNGKFAVVAN-------DRFEI  109 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC--CCCSEEEEEECTTSSEEEEEE-------TTSEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC--CCceEEeeeecccccccceec-------ccccc
Confidence            45778999999999999988655 443  7799998876543333  578899999999999999888       57999


Q ss_pred             EEEeCCCCcEEEEEeeCC-ceeEEEEeCCe--EEEEE-----------CCEEEEEEcCCcEEEEEEeccCCCCceEEEee
Q 020784          159 MIWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVL-----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--~~~~~-----------~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~  224 (321)
                      ++||+.+++....+..+. .+.++.|+++.  ++.+.           ++.+++||+.+++...... +.......++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~sp  188 (360)
T d1k32a3         110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDA  188 (360)
T ss_dssp             EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEEECT
T ss_pred             ccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-cccccccccccC
Confidence            999999999887776554 67889998764  33221           1368899998765533211 111111111111


Q ss_pred             CCCceEEEe-----------------------------------------------------------------------
Q 020784          225 GVGSLVLVC-----------------------------------------------------------------------  233 (321)
Q Consensus       225 ~~d~~~la~-----------------------------------------------------------------------  233 (321)
                        |+..|++                                                                       
T Consensus       189 --dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (360)
T d1k32a3         189 --DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY  266 (360)
T ss_dssp             --TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE
T ss_pred             --CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce
Confidence              2222221                                                                       


Q ss_pred             --------------------------ecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEE
Q 020784          234 --------------------------PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (321)
Q Consensus       234 --------------------------sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd  287 (321)
                                                +++.++.|++||+.++.+.   .|.+.|.+++|||||++||+++.||+ |+|||
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~v~~~~~SpDG~~l~~~~~Dg~-i~v~d  342 (360)
T d1k32a3         267 RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVKNNLTDLRLSADRKTVMVRKDDGK-IYTFP  342 (360)
T ss_dssp             EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEEEEEEEEEECTTSCEEEEEETTSC-EEEEE
T ss_pred             eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE---EecCCcCEEEECCCCCEEEEEECCCe-EEEEE
Confidence                                      1333556666666555433   34556899999999999999999999 99999


Q ss_pred             cCCCcEEEEEe
Q 020784          288 TLDGTLLQEEC  298 (321)
Q Consensus       288 ~~tg~~i~~~~  298 (321)
                      +++|+...++.
T Consensus       343 ~~~~~~~~~~~  353 (360)
T d1k32a3         343 LEKPEDERTVE  353 (360)
T ss_dssp             SSCTTSCEECC
T ss_pred             CCCCCcceEEE
Confidence            99998877764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=2.1e-19  Score=159.67  Aligned_cols=193  Identities=12%  Similarity=-0.025  Sum_probs=157.0

Q ss_pred             EEEEcC-CCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcE
Q 020784           90 HISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (321)
Q Consensus        90 ~v~fs~-dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~  168 (321)
                      .-.||| ||+++|+++.+.+.|||.+.+.... .  .|.+.+..+.|+++++.+++++..     .++.|++||.++++.
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~-----~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTR-----EGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEET-----TEEEEEEEETTTCCE
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcC-----CCCEEEEEECCCCcE
Confidence            356999 9999999999889999998766532 2  268899999999999999888743     235799999999888


Q ss_pred             EEEEeeCCceeEEEEeCCe--EEEEEC-CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee---------cC
Q 020784          169 IGELSFRSEVRSVKLRRDR--IIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP---------GL  236 (321)
Q Consensus       169 ~~~~~~~~~v~~v~~~~~~--~~~~~~-~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s---------Gs  236 (321)
                      .....+...|.+++|+++.  ++.+.. +.+++|++.+++....+..+......++++++  +.+||++         +.
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd--g~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN--SRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT--SCEEEEEEEECSSTTCSC
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccc--eeeeeeeccccccceeec
Confidence            7666677789999999864  555544 69999999999998888887766666777664  5777753         45


Q ss_pred             CCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 020784          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~  293 (321)
                      .++.+++|+...+....+..|...+..++|+|||++|++++.|+. +++||......
T Consensus       157 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~~~  212 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNF  212 (360)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCE
T ss_pred             cccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccccce
Confidence            566788999998888888888999999999999999999999999 99999876543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=6.9e-19  Score=162.31  Aligned_cols=225  Identities=8%  Similarity=-0.066  Sum_probs=151.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-cEEEEEecCCceeEEeeeecCCc----eEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           86 PTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGG----IGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~-gv~vw~~~~~~~~~~~~~~~~~~----v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ..+..++|||||++|++++.+ ++++||+++.+.....+......    +..++++++++.+++++.      .++++++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~------~~~~v~i  135 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAI  135 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec------CCCeEEE
Confidence            469999999999999998875 58899999887654444321212    222334567887766553      4689999


Q ss_pred             EeCCCCcEEEEEeeC------------C--------------------------------------------ceeEEEEe
Q 020784          161 WDDHQSRCIGELSFR------------S--------------------------------------------EVRSVKLR  184 (321)
Q Consensus       161 WD~~~~~~~~~~~~~------------~--------------------------------------------~v~~v~~~  184 (321)
                      ||..++.++..+..+            .                                            .+..+.+.
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            998887665433211            0                                            11122333


Q ss_pred             CC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCC--CCceEEEeeCCCceEEEeecCCCCcEEEEeeCC--------cc
Q 020784          185 RD--RIIVVL--EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------KR  250 (321)
Q Consensus       185 ~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~--~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~--------~~  250 (321)
                      ++  .++++.  ++.+.+++..+++.+..+.....  +.....+.....+...+.+.+.|+.+.+|+...        +.
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~  295 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  295 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence            22  233333  24788888888888877765432  233444555555556655677788888877543        34


Q ss_pred             eEEeeccccceeEEEECCCCCEEE-------EEeCCCcEEEEEEcCCCcEEEEEeC--------CCc--ceeEEEeecCc
Q 020784          251 TKFIMAHDSRIACFALTQDGQLLA-------TSSTKGTLVRIFNTLDGTLLQEECC--------PSI--SAQSGLWLSSA  313 (321)
Q Consensus       251 ~~~l~~H~~~V~~vafspdg~~la-------s~S~Dgt~IrIWd~~tg~~i~~~~~--------g~~--~~~~~~s~d~~  313 (321)
                      ..++.+|...|..++|+|||++|+       +++.|++ |+|||+.++++.+++..        .+.  ...+.||+||+
T Consensus       296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence            568999999999999999999999       5677899 99999999988766521        111  23347899999


Q ss_pred             eEEE
Q 020784          314 WLRV  317 (321)
Q Consensus       314 ~la~  317 (321)
                      +|.+
T Consensus       375 ~i~v  378 (426)
T d1hzua2         375 EVWF  378 (426)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=8.5e-17  Score=139.07  Aligned_cols=221  Identities=11%  Similarity=0.042  Sum_probs=167.5

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~la-sg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+..++|+|||++|+ +++. +.|++||+.+.+.+.....  ......+.+..++..+++.+.      .++.+++||.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  103 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDT  103 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET------TTTEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec--ccccccccccccccccccccc------ccceeeeccc
Confidence            3578999999999875 5554 5689999999987766553  455677788888887776663      3588999999


Q ss_pred             CCCcEEEEEeeCCceeEEEEeCCe--EEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          164 HQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      .+++....+.....+..+.++++.  +++..  +..+.+|+..+.+.+..+..+..+ ..+.+  .+++..+++++..++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-KGIAV--TPDGTKVYVANFDSM  180 (301)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE-EEEEE--CTTSSEEEEEETTTT
T ss_pred             ccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc-eEEEe--eccccceeeeccccc
Confidence            999999888888888889998753  44444  358999999999998888765432 23344  445455554456667


Q ss_pred             cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~---Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                      .+.+|+...........+...+..++|+++|..++.++.   +++ |++||+.+++++.++..+.....+++++||++|.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~  259 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY  259 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred             ccccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEE
Confidence            777787776665554555567889999999998766543   467 9999999999999998877777789999999886


Q ss_pred             Ee
Q 020784          317 VL  318 (321)
Q Consensus       317 ~~  318 (321)
                      ++
T Consensus       260 va  261 (301)
T d1l0qa2         260 VA  261 (301)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=5e-18  Score=154.53  Aligned_cols=183  Identities=15%  Similarity=0.108  Sum_probs=130.8

Q ss_pred             CCCCeEEEEEcCCC-----CEEEEEcC-CcEEEEEecCCc-------------eeEEeeee----cCCceEEEEEecCCC
Q 020784           84 PPPTLLHISFNQDH-----GCFAAGTD-HGFRIYNCDPFR-------------EIFRRDFE----RGGGIGVVEMLFRCN  140 (321)
Q Consensus        84 ~~~~V~~v~fs~dg-----~~lasg~~-~gv~vw~~~~~~-------------~~~~~~~~----~~~~v~~v~~~~~~~  140 (321)
                      ++..+..++|.+++     .+|++++. +.+++|++....             ........    +...+.++++++++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            44578888888764     57777766 458899974321             01111110    23446677887765 


Q ss_pred             eEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEee-------CCceeEEEEeCC--eEEEEEC-C---EEEEEEcCCcEEE
Q 020784          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRD--RIIVVLE-Q---KIFVYNFADLKLL  207 (321)
Q Consensus       141 ~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~-------~~~v~~v~~~~~--~~~~~~~-~---~I~iwd~~~~~~~  207 (321)
                      .+++++       .|++|+|||+++++.+..+..       ...|.+++|+++  .++++++ +   .|++||+.+++.+
T Consensus       197 ~lasgs-------~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~  269 (393)
T d1sq9a_         197 LIATGF-------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  269 (393)
T ss_dssp             EEEEEC-------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EEEEEe-------CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceee
Confidence            555555       689999999999988776542       347999999986  4555543 3   5999999999998


Q ss_pred             EEEe-------------ccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeecccccee----EEEECCC
Q 020784          208 HQIE-------------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA----CFALTQD  269 (321)
Q Consensus       208 ~~l~-------------~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~----~vafspd  269 (321)
                      .++.             +|...+..++|  .+|+.+|+ +|+.||+|+|||+.++. +.+|++|.+.|.    .++|+++
T Consensus       270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~f--spd~~~l~-S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         270 GSLSVPTHSSQASLGEFAHSSWVMSLSF--NDSGETLC-SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEE--CSSSSEEE-EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             eeeccccccccceeeeecccCceeeecc--CCCCCeeE-EECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCC
Confidence            8875             45555444555  45668888 69999999999998766 668999998886    5899999


Q ss_pred             CCEEEEEe
Q 020784          270 GQLLATSS  277 (321)
Q Consensus       270 g~~las~S  277 (321)
                      |..+++++
T Consensus       347 ~~~~~~~~  354 (393)
T d1sq9a_         347 GDSLAEPG  354 (393)
T ss_dssp             SCBCSSCC
T ss_pred             CCEEEEcc
Confidence            99887665

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.9e-17  Score=143.98  Aligned_cols=209  Identities=8%  Similarity=-0.031  Sum_probs=148.7

Q ss_pred             CCeEEEEEcCCCCEE-EEEcC-CcEEEEEecCCceeEEeeeecC-----CceEEEEEecCCCeEEEEeCCCC-----CCC
Q 020784           86 PTLLHISFNQDHGCF-AAGTD-HGFRIYNCDPFREIFRRDFERG-----GGIGVVEMLFRCNILALVGGGPD-----PQY  153 (321)
Q Consensus        86 ~~V~~v~fs~dg~~l-asg~~-~gv~vw~~~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~~~~sg~~~-----~~~  153 (321)
                      ..+.+++|+|||++| ++++. +.|.+||+.+++.+..... +.     .....++++++++.++++.....     ...
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL-STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC-CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec-CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            356789999999987 46655 5588999999987766543 11     12235677888888876653210     011


Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe-EEEEECCEEEEEEcCCcEEEEEEeccCCCC---------------
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQIETIANPK---------------  217 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~---------------  217 (321)
                      .+..+.+||..+++....+.....+..+.++++. .+.+.++.+.+||..+++....+..+....               
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             cccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccc
Confidence            3578999999999999998888888889998764 333445668889988877776654321100               


Q ss_pred             -------------------------------------------------ceEEEeeCCCceEEEeecCCCCcEEEEeeCC
Q 020784          218 -------------------------------------------------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (321)
Q Consensus       218 -------------------------------------------------~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~  248 (321)
                                                                       ....+...+++.+++   ..++.|++||..+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~d~~~  269 (337)
T d1pbyb_         193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF---GAYNVLESFDLEK  269 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE---EEESEEEEEETTT
T ss_pred             cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE---EccccEEEEECCC
Confidence                                                             011222233444443   2357899999988


Q ss_pred             cceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       249 ~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      +.......+...+.+++|+|||++|++++.|++ |+|||+++++.+.+++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~-i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         270 NASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TEEEEEEECSSCCCEEEECTTSCEEEEESBSSE-EEEEETTTCCEEEEEEC
T ss_pred             CcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCc-EEEEECCCCcEEEEEEC
Confidence            775544457778999999999999999999999 99999999999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.77  E-value=6.2e-16  Score=133.52  Aligned_cols=207  Identities=13%  Similarity=0.052  Sum_probs=156.9

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CC-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeC
Q 020784           86 PTLLHISFNQDHGCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~-~~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~  163 (321)
                      ..+..++|+++|.++++++ .+ .+.+|+..+.+.......  ......+.+.++++.+++...      .++.+.+||.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dg~~~~~~~~------~~~~~~~~~~  145 (301)
T d1l0qa2          74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNN------GDKTVSVINT  145 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET------TTTEEEEEET
T ss_pred             ccccccccccccccccccccccceeeecccccceeeeeccc--cccceEEEeecCCCeeeeeec------cccceeeeec
Confidence            3678999999999776554 44 477999988877655553  566777888889988876663      3688999999


Q ss_pred             CCCcEEEEEeeCCceeEEEEeCC--eEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          164 HQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      .++..+..+.....+..+.++++  .++++..  ..+.+|+....+....+..+..+ ..++++++++..+++..+..++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAP-SGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEE-EEEEECTTSSEEEEEEECSSCC
T ss_pred             cccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCc-ceeeccccccccccccccceee
Confidence            99999988888888888998875  3555543  58889999888887777665433 2345566554444444456678


Q ss_pred             cEEEEeeCCcceE-EeeccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEeCCCcc
Q 020784          240 QVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEECCPSIS  303 (321)
Q Consensus       240 ~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~tg~~i~~~~~g~~~  303 (321)
                      .|.+||..+..+. .+. +...+++++|+|||++| ++++.|++ |+|||++++++++++..|...
T Consensus       225 ~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~-i~v~D~~t~~~~~~~~vg~~P  288 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNT-VSVIDTATNTITATMAVGKNP  288 (301)
T ss_dssp             EEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECSSSE
T ss_pred             eeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCe-EEEEECCCCeEEEEEeCCCCC
Confidence            8999999877654 444 44568999999999976 78888999 999999999999999877653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=5.1e-17  Score=142.96  Aligned_cols=200  Identities=10%  Similarity=0.013  Sum_probs=132.2

Q ss_pred             EEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           91 ISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        91 v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      ++|+++|++|++++. +.|.|||+++.+.+......+......+.+++++..+++++.      .++.|++||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~------~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC------CCCcEEEEeCccCeee
Confidence            478999999999987 558899999998876665423445678899999998876653      3589999999999877


Q ss_pred             EEEeeCC-------ceeEEEEeCC--------------------------------------------------------
Q 020784          170 GELSFRS-------EVRSVKLRRD--------------------------------------------------------  186 (321)
Q Consensus       170 ~~~~~~~-------~v~~v~~~~~--------------------------------------------------------  186 (321)
                      ..+....       .+..+.++++                                                        
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            6654321       1223333322                                                        


Q ss_pred             eEEEEECCEEEEEEcCCcEEEEEEeccCCCCc------------------------------------------------
Q 020784          187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKG------------------------------------------------  218 (321)
Q Consensus       187 ~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~------------------------------------------------  218 (321)
                      ..+...+..+.+|++.+++.+..+..+..+..                                                
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            11112233456666666666665543211100                                                


Q ss_pred             ------------------eEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC
Q 020784          219 ------------------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (321)
Q Consensus       219 ------------------~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg  280 (321)
                                        .......+++..+++  ..++.|.+||..++.......+...+++++|+|||++|++++.|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~  313 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN  313 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE--EEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEE--ecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence                              000111111122221  123578889887766544344566799999999999999999999


Q ss_pred             cEEEEEEcCCCcEEEEEeC
Q 020784          281 TLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       281 t~IrIWd~~tg~~i~~~~~  299 (321)
                      + |+|||+++++++.+++.
T Consensus       314 ~-v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         314 D-LAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             E-EEEEETTTTEEEEEEEC
T ss_pred             c-EEEEECccCCEEEEEEC
Confidence            9 99999999999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.7e-17  Score=143.27  Aligned_cols=197  Identities=8%  Similarity=-0.021  Sum_probs=124.1

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           83 SPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg-~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      .|.++|++++|++++ .+|++|+.++ |++|++............+...........+...++..+       .++++++
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  126 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS-------WDGLIEV  126 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE-------TTSEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccc-------cccccce
Confidence            477899999999875 5788888765 889999877665544431223334444556677777776       5799999


Q ss_pred             EeCCCCcEEEEEe----eC-----CceeEEEEeCCeEEEEE-CCEEEEEEcCCcEEEEE---------------------
Q 020784          161 WDDHQSRCIGELS----FR-----SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQ---------------------  209 (321)
Q Consensus       161 WD~~~~~~~~~~~----~~-----~~v~~v~~~~~~~~~~~-~~~I~iwd~~~~~~~~~---------------------  209 (321)
                      ||++.+.......    ..     .....+......++.+. ++.|++||+...+....                     
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9976543221111    11     11223334444555544 45777777643211000                     


Q ss_pred             -------------------------------Eecc-------CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-
Q 020784          210 -------------------------------IETI-------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-  250 (321)
Q Consensus       210 -------------------------------l~~~-------~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-  250 (321)
                                                     +..+       .....+.++.+++++.+|| +|+.||.|++||+.++. 
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la-sg~~Dg~v~vWD~~~~~~  285 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEETTSCEEEEETTTTEE
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE-EECCCCEEEEEECCCCcE
Confidence                                           0000       0001133555666778888 59999999999998765 


Q ss_pred             eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       251 ~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      +.++..| ..+..++|+|+|.+||+|+.|++ +++|...
T Consensus       286 l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~-~~~~~~~  322 (342)
T d1yfqa_         286 IKNFAKF-NEDSVVKIACSDNILCLATSDDT-FKTNAAI  322 (342)
T ss_dssp             EEECCCC-SSSEEEEEEECSSEEEEEEECTH-HHHCSSS
T ss_pred             EEEecCC-CCCEEEEEEeCCCEEEEEEcCCc-EEEeeee
Confidence            4556443 34567888899999999999999 9999754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.8e-14  Score=131.69  Aligned_cols=197  Identities=14%  Similarity=0.102  Sum_probs=143.3

Q ss_pred             CCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCc--EEEEEe
Q 020784           97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS  173 (321)
Q Consensus        97 g~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~--~~~~~~  173 (321)
                      ..++++.++++ |+|||.++++.+.....  +..+..+.++++++.+++++       .|++|++||+.+++  .+.++.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~--g~~~~~v~fSpDG~~l~~~s-------~dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeC--CCCeeEEEECCCCCEEEEEc-------CCCCEEEEEeeCCCceEEEEEe
Confidence            33456777754 88999999999877775  45688999999999999887       67999999998776  444555


Q ss_pred             eCCceeEEEEe----CC--eEEEE--ECCEEEEEEcCCcEEEEEEeccCCCC---------ceEEEeeCCCceEEEeecC
Q 020784          174 FRSEVRSVKLR----RD--RIIVV--LEQKIFVYNFADLKLLHQIETIANPK---------GLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       174 ~~~~v~~v~~~----~~--~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~---------~~~~~s~~~d~~~la~sGs  236 (321)
                      .......+.++    ++  .+++.  .++.|++||..+++.++.+..+....         ...++...+++..++++..
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            44444444443    33  45443  35799999999999998887643222         1233344445566555678


Q ss_pred             CCCcEEEEeeCCcc-eEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc
Q 020784          237 QKGQVRVEHYASKR-TKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI  302 (321)
Q Consensus       237 ~dg~V~i~d~~~~~-~~~l~-~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~  302 (321)
                      .++.|.+|+..... ..... .+...+..++|+|||+++++++.++..|.+||..+++.+..+..+..
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~  250 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ  250 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcc
Confidence            88999999987644 33222 45667899999999999888888776699999999999988766543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.66  E-value=8.9e-14  Score=124.08  Aligned_cols=222  Identities=10%  Similarity=-0.031  Sum_probs=137.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC------CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCC---CCC
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD---PQY  153 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~------~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~---~~~  153 (321)
                      .+..++.+++|+|||+.++....      ..+.+||.++++.+....   .+....+.+++++..++++.....   ...
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~---~~~~~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN---GGFLPNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe---CCCCccEEEcCCCCEEEEEeecCCcccccc
Confidence            45668999999999999876432      237789999998776544   344446889999999988764321   112


Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCc------------------------------------------------eeEEEEeC
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSE------------------------------------------------VRSVKLRR  185 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~------------------------------------------------v~~v~~~~  185 (321)
                      .++.|++||..+++.+..+..+..                                                +.++.+++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  174 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence            468899999999887655432110                                                00111111


Q ss_pred             C--eEEEE--ECCEEEEEEcCCcEEEEEEeccCCCC----c---------------------------------------
Q 020784          186 D--RIIVV--LEQKIFVYNFADLKLLHQIETIANPK----G---------------------------------------  218 (321)
Q Consensus       186 ~--~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~----~---------------------------------------  218 (321)
                      +  .++++  .++++.+|+...++.......+....    .                                       
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence            1  12222  24678888876655544332110000    0                                       


Q ss_pred             ----------------eEEEeeCCC--------ceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEEECCCCC--E
Q 020784          219 ----------------LCAVSQGVG--------SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ--L  272 (321)
Q Consensus       219 ----------------~~~~s~~~d--------~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~--~  272 (321)
                                      ..++++++.        +..++ .+..++.|.+||..++.......|...+..++|+|||+  +
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l  333 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK-LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDL  333 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE-eecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEE
Confidence                            011111111        01111 13345567777776666544445778899999999998  4


Q ss_pred             EEEEeCCCcEEEEEEcCCCcEEEEEe-CCCcceeEEEe
Q 020784          273 LATSSTKGTLVRIFNTLDGTLLQEEC-CPSISAQSGLW  309 (321)
Q Consensus       273 las~S~Dgt~IrIWd~~tg~~i~~~~-~g~~~~~~~~s  309 (321)
                      +++++.|++ |+|||+.+|+.++++. .|.....+++.
T Consensus       334 ~vt~~~d~~-v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         334 YALSAGTEV-LHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EEEeCCCCe-EEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            578999999 9999999999999996 45555555543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=3.4e-14  Score=124.04  Aligned_cols=207  Identities=9%  Similarity=-0.004  Sum_probs=147.3

Q ss_pred             CEEEEEcC-CcEEEEEecCCceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC
Q 020784           98 GCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (321)
Q Consensus        98 ~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (321)
                      +||++++. +.|.|||+++.+.+...... +......++++++++.+++++.      .++.|.+||+.+++.+..+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~------~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEEEecC
Confidence            47888876 56999999999887666542 2344667899999998876653      3589999999999998877654


Q ss_pred             C------ceeEEEEeCC--eEEEEE-------------CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          176 S------EVRSVKLRRD--RIIVVL-------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       176 ~------~v~~v~~~~~--~~~~~~-------------~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      .      .+..+.++++  .++++.             +..+.+||..+++.+..+..+..+ ..+++++  |+.++++ 
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~s~--dg~~l~~-  151 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI-TMLAWAR--DGSKLYG-  151 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC-CCEEECT--TSSCEEE-
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCc-eEEEEcC--CCCEEEE-
Confidence            3      3446777765  333332             358999999999998888765443 3445555  4455553 


Q ss_pred             cCCCCcEEEEeeC-----------------------------------------------------------------Cc
Q 020784          235 GLQKGQVRVEHYA-----------------------------------------------------------------SK  249 (321)
Q Consensus       235 Gs~dg~V~i~d~~-----------------------------------------------------------------~~  249 (321)
                      ++.  .+.+||..                                                                 ..
T Consensus       152 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         152 LGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             ESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            332  23334322                                                                 11


Q ss_pred             ce--EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          250 RT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       250 ~~--~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ..  ..+..|...+..+++++++.+++.+  +++ |++||+.+++++.++..++....+.|++||++|+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~  298 (337)
T d1pbyb_         230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES
T ss_pred             cEEEEEecCCCcceEEEEecccceEEEEc--ccc-EEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEe
Confidence            11  1234456677888999999988766  577 9999999999999998888777889999999998864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=5.5e-13  Score=116.39  Aligned_cols=215  Identities=10%  Similarity=0.103  Sum_probs=127.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-C-CcEEEEEecCCceeEEe--eeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcE
Q 020784           83 SPPPTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRR--DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~-~-~gv~vw~~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v  158 (321)
                      .+.+.|.+++|+|||++|++++ + +.|++|+++........  ...+......++++++++.+++++.      .++.|
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~------~~~~v  107 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNV  107 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc------CCCce
Confidence            3556789999999999986544 3 55889999766433222  1113445667899999999888763      35789


Q ss_pred             EEEeCCCCcEEEEEe---eCCceeEEEEeCCe--EEEEE--CCEEEEEEcCCcEEE------------------------
Q 020784          159 MIWDDHQSRCIGELS---FRSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLL------------------------  207 (321)
Q Consensus       159 ~iWD~~~~~~~~~~~---~~~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~~~------------------------  207 (321)
                      ++|+...........   ....+.++.++++.  ++++.  ...|.+|+.......                        
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             eeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            999877665443332   22345666666542  23332  235666665321100                        


Q ss_pred             -----------------------------EEEecc----CCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEE
Q 020784          208 -----------------------------HQIETI----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF  253 (321)
Q Consensus       208 -----------------------------~~l~~~----~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~  253 (321)
                                                   ..+...    ............+|+.++.+.+..++.+.+|+..... ...
T Consensus       188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (333)
T d1ri6a_         188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS  267 (333)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE
Confidence                                         000000    0001122233344555555457778888888765432 222


Q ss_pred             ---eeccccceeEEEECCCCCEEEEEeC-CCcEEEEE--EcCCCcE--EEEEeCCCcce
Q 020784          254 ---IMAHDSRIACFALTQDGQLLATSST-KGTLVRIF--NTLDGTL--LQEECCPSISA  304 (321)
Q Consensus       254 ---l~~H~~~V~~vafspdg~~las~S~-Dgt~IrIW--d~~tg~~--i~~~~~g~~~~  304 (321)
                         ...+...++.++|+|||++|++++. +++ |+||  |.++|++  +.++..|....
T Consensus       268 ~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~-v~v~~id~~tG~l~~~~~~~~g~~p~  325 (333)
T d1ri6a_         268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGLLHEKGRYAVGQGPM  325 (333)
T ss_dssp             EEEEEECSSSCCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTEEEEEEEEECSSSCC
T ss_pred             EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCe-EEEEEEECCCCcEEEEEeccCCCCCc
Confidence               2334567889999999998776654 567 9999  5578865  44565555443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.57  E-value=1.4e-12  Score=119.34  Aligned_cols=192  Identities=12%  Similarity=0.037  Sum_probs=133.0

Q ss_pred             CEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEE--EEee
Q 020784           98 GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--ELSF  174 (321)
Q Consensus        98 ~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~--~~~~  174 (321)
                      .++++.++++ |+|||+.+++.+.....  ...+..++++++++.+++++       .|++|++||+.+++...  ++..
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~--g~~~~~vafSPDGk~l~~~~-------~d~~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIG-------RDARIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEEC--CSSEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCEEEEEEEC
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeC--CCCeeEEEECCCCCEEEEEe-------CCCCEEEEEccCCceeEEEEEeC
Confidence            3556777755 88999999998877764  45688899999999998877       57999999999887543  3433


Q ss_pred             CCcee----EEEEeCC--eEEEE--ECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE---
Q 020784          175 RSEVR----SVKLRRD--RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV---  243 (321)
Q Consensus       175 ~~~v~----~v~~~~~--~~~~~--~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i---  243 (321)
                      .....    ++.|+++  .++++  .++.+++||...++++..+..+...+....+.+++....++  ++.|+...+   
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~s~d~~~~~~~~  181 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII--ASHEHPEFIVNV  181 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE--ECSSSSEEEEEE
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEE--ECCCCCEEEEec
Confidence            33333    3444443  45554  35799999999999988887765544444444443322222  344444333   


Q ss_pred             --------EeeCCcc--eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC
Q 020784          244 --------EHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP  300 (321)
Q Consensus       244 --------~d~~~~~--~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g  300 (321)
                              ++.....  ......+...+..++|+|+|+++.++..+...+.+|+..+++++..+..+
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  248 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  248 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS
T ss_pred             CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC
Confidence                    3332222  22345677889999999999998888776666999999999998877644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=7.1e-13  Score=117.02  Aligned_cols=217  Identities=14%  Similarity=0.042  Sum_probs=134.4

Q ss_pred             eEEEEEcCCCCEEEEEc-----------CCcEEEEEecCCceeEEeeee------cCCceEEEEEecCCCeEEEEeCCCC
Q 020784           88 LLHISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~-----------~~gv~vw~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      +..++|+|||++|++.+           ++.|++||..+++........      .......+.++++++.++++..+  
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--  126 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--  126 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS--
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC--
Confidence            34689999999887643           234889999998776554321      01122346788899988887654  


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeeCCce--------eEEEEeCC------------------------------------
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSFRSEV--------RSVKLRRD------------------------------------  186 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~~~v--------~~v~~~~~------------------------------------  186 (321)
                         .+..+.+||..+++.+..+......        ..+.+.++                                    
T Consensus       127 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (355)
T d2bbkh_         127 ---PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS  203 (355)
T ss_dssp             ---SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred             ---CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeecccc
Confidence               4578999999999877665433211        11111111                                    


Q ss_pred             ----eEEEEE-CCEEEEEEcCCcEE--EEEEeccC----------CCCceEEEeeCCCceEEEee-------cCCCCcEE
Q 020784          187 ----RIIVVL-EQKIFVYNFADLKL--LHQIETIA----------NPKGLCAVSQGVGSLVLVCP-------GLQKGQVR  242 (321)
Q Consensus       187 ----~~~~~~-~~~I~iwd~~~~~~--~~~l~~~~----------~~~~~~~~s~~~d~~~la~s-------Gs~dg~V~  242 (321)
                          .++.+. ++.+++|++..++.  +.....+.          ......++++++...+++..       ......|.
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  283 (355)
T d2bbkh_         204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  283 (355)
T ss_dssp             TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEE
Confidence                223333 45888888866543  11121110          11234556665533333211       11234688


Q ss_pred             EEeeCCcceEEeeccccceeEEEECCCCC--EEEEEeCCCcEEEEEEcCCCcEEEEEe-CCCcceeEEEee
Q 020784          243 VEHYASKRTKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEEC-CPSISAQSGLWL  310 (321)
Q Consensus       243 i~d~~~~~~~~l~~H~~~V~~vafspdg~--~las~S~Dgt~IrIWd~~tg~~i~~~~-~g~~~~~~~~s~  310 (321)
                      +||..++.......+...+.+++|+|||+  ++++++.|++ |+|||+++|++++++. .|+....+.+..
T Consensus       284 v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~-i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         284 VLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             EEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE-EEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             EEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCE-EEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            89988766443223556689999999997  5677888999 9999999999999996 455555554443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=2.7e-13  Score=124.92  Aligned_cols=165  Identities=12%  Similarity=0.084  Sum_probs=122.3

Q ss_pred             CCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE-CCEEEEEEcCCcE--EEEEEeccCCCCc-eEEEeeCCC
Q 020784          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKG-LCAVSQGVG  227 (321)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~-~~~I~iwd~~~~~--~~~~l~~~~~~~~-~~~~s~~~d  227 (321)
                      .+++|+|||.++++++..+..+..+..+.|+++  .++++. +++|++||+.+++  .+..+.....+.. +.+..+.+|
T Consensus        40 d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            579999999999999999998888999999987  466555 5799999997655  4444543322221 222234567


Q ss_pred             ceEEEeecCCCCcEEEEeeCCcc-eEEeecc-----------ccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCcEE
Q 020784          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAH-----------DSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       228 ~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H-----------~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~tg~~i  294 (321)
                      +..|+++++.++.|++||..+.. +..+..|           ......|.++|+|..+ ++.+.++. |.+||..+++..
T Consensus       120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~-i~~~d~~~~~~~  198 (432)
T d1qksa2         120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK-ILLVDYTDLNNL  198 (432)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE-EEEEETTCSSEE
T ss_pred             CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe-EEEEEccCCCcc
Confidence            78776578999999999988765 3444443           4456789999999865 55666777 999999998865


Q ss_pred             E--EEeCCCcceeEEEeecCceEEEee
Q 020784          295 Q--EECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       295 ~--~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      .  ++..+.....+.+++||+|+.++.
T Consensus       199 ~~~~i~~g~~~~~~~~spdg~~~~va~  225 (432)
T d1qksa2         199 KTTEISAERFLHDGGLDGSHRYFITAA  225 (432)
T ss_dssp             EEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred             eEEEEcccCccccceECCCCCEEEEec
Confidence            4  455565566779999999988864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=3.3e-12  Score=114.29  Aligned_cols=212  Identities=8%  Similarity=-0.032  Sum_probs=130.4

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEEecCCceeEEeeee------cCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        90 ~v~fs~dg~~lasg~-----------~~gv~vw~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      .++|+|||++|++.+           ++.|++||..+.+........      ....-..+.++++++.++++..     
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~-----  143 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF-----  143 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC-----
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC-----
Confidence            589999999988754           244889999998876655431      0111224788999999987763     


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeeCCcee--------EEEEeCC--------------------------------------
Q 020784          153 YPLNKVMIWDDHQSRCIGELSFRSEVR--------SVKLRRD--------------------------------------  186 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~--------~v~~~~~--------------------------------------  186 (321)
                       .++++.+||+.+++.+..+.......        .+.+.++                                      
T Consensus       144 -~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         144 -GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             -SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             -CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence             36899999999999887765432110        1111111                                      


Q ss_pred             eEEE-EECCEEEEEEcCCcEEEEEEe--ccC----------CCCceEEEeeCCCceEEEeecC------CCCcEEEEeeC
Q 020784          187 RIIV-VLEQKIFVYNFADLKLLHQIE--TIA----------NPKGLCAVSQGVGSLVLVCPGL------QKGQVRVEHYA  247 (321)
Q Consensus       187 ~~~~-~~~~~I~iwd~~~~~~~~~l~--~~~----------~~~~~~~~s~~~d~~~la~sGs------~dg~V~i~d~~  247 (321)
                      ...+ ...+.+.++++...+......  ...          ......+++++++..+++..+.      ....|.+||..
T Consensus       223 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             TEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             cEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence            1111 122345555554333221111  000          0112456666554333332111      12357788988


Q ss_pred             CcceEEeeccccceeEEEECCCCC--EEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEE
Q 020784          248 SKRTKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGL  308 (321)
Q Consensus       248 ~~~~~~l~~H~~~V~~vafspdg~--~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~  308 (321)
                      +++......+...+.+++|+|||+  ++++++.|++ |+|||..+|+.+++++.|.....+.+
T Consensus       303 t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         303 VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             SCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             CCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEEECCCCCCEEEE
Confidence            766443333556799999999997  4678888999 99999999999999987766555543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=7.3e-11  Score=102.54  Aligned_cols=210  Identities=11%  Similarity=0.099  Sum_probs=126.4

Q ss_pred             EEEEcC-CcEEEEEecCCcee-EEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE----EEEe
Q 020784          100 FAAGTD-HGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI----GELS  173 (321)
Q Consensus       100 lasg~~-~gv~vw~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~----~~~~  173 (321)
                      ++++++ +.|+||+++..+.+ ....+.|.+.+..++++++++.|++++.      .|+.|++|++......    ....
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~------~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------CCCeEEEEEEeCCCCcEEEeeecc
Confidence            345544 67999999765432 2232335788899999999999876663      4699999998765422    2233


Q ss_pred             eCCceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEEEEec--cCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeC
Q 020784          174 FRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (321)
Q Consensus       174 ~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~--~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~  247 (321)
                      ....+..++|+++  .++++.  ++.|++|+............  +......+.++++  +..+++.+..+..|.+|+..
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD--NRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT--SSEEEEEEGGGTEEEEEEEC
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeec--ceeeeccccccceeeEEEec
Confidence            4456888999986  466664  35899999876655544433  2222333444444  34444334444455555432


Q ss_pred             Ccc---------------------------------------------------eE---Eee------ccccceeEEEEC
Q 020784          248 SKR---------------------------------------------------TK---FIM------AHDSRIACFALT  267 (321)
Q Consensus       248 ~~~---------------------------------------------------~~---~l~------~H~~~V~~vafs  267 (321)
                      ...                                                   ..   .+.      .....+..++++
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  238 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence            110                                                   00   000      112335567889


Q ss_pred             CCCCEEEEE-eCCCcEEEEEEcCCCcEE----EEEeCCCcceeEEEeecCceEEEe
Q 020784          268 QDGQLLATS-STKGTLVRIFNTLDGTLL----QEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       268 pdg~~las~-S~Dgt~IrIWd~~tg~~i----~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      ++++++..+ ..+++ +++|++......    .....+.....+.+++||+||+++
T Consensus       239 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va  293 (333)
T d1ri6a_         239 PDGRHLYACDRTASL-ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA  293 (333)
T ss_dssp             TTSSEEEEEETTTTE-EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred             cccCceeeecccCCe-EEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEE
Confidence            998865554 45666 999998764322    222334445567999999999876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=1.3e-11  Score=108.72  Aligned_cols=223  Identities=10%  Similarity=-0.036  Sum_probs=144.6

Q ss_pred             EEEcCCCCEEEEEc------CCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCC---CCCCCcEEEE
Q 020784           91 ISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIW  161 (321)
Q Consensus        91 v~fs~dg~~lasg~------~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~---~~~d~~v~iW  161 (321)
                      .+.+|||+.+++..      .+++.+||.++++.+.....   +....++++++++.+++++.....   ...++.|++|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~---g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC---CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence            45689999887653      23488999999987665553   444468999999988876521100   0025789999


Q ss_pred             eCCCCcEEEEEeeCC--------ceeEEEEeCC--eEEEEE---CCEEEEEEcCCcEEEEEEeccCCC-------CceEE
Q 020784          162 DDHQSRCIGELSFRS--------EVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANP-------KGLCA  221 (321)
Q Consensus       162 D~~~~~~~~~~~~~~--------~v~~v~~~~~--~~~~~~---~~~I~iwd~~~~~~~~~l~~~~~~-------~~~~~  221 (321)
                      |..+++.+.++....        .+..+.|+++  .++++.   +..+.+|+..+++.+..+..+...       ...+.
T Consensus        84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             ECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            999999888776432        2345677765  355543   358999999988887766532110       01111


Q ss_pred             EeeC------------------------------------CCceEEEeecCCCCcEEEEeeCCcceEEe---eccc----
Q 020784          222 VSQG------------------------------------VGSLVLVCPGLQKGQVRVEHYASKRTKFI---MAHD----  258 (321)
Q Consensus       222 ~s~~------------------------------------~d~~~la~sGs~dg~V~i~d~~~~~~~~l---~~H~----  258 (321)
                      ++.+                                    +++..++. .+.+|.+++|+...+....+   ..|.    
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER  242 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEE-ecCCCeEEEEecCCCcEEEEeccCCcccceE
Confidence            1111                                    11122332 46788899998876654322   2221    


Q ss_pred             ------cceeEEEECCCCCEEEEEeCCC---------cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEE
Q 020784          259 ------SRIACFALTQDGQLLATSSTKG---------TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRV  317 (321)
Q Consensus       259 ------~~V~~vafspdg~~las~S~Dg---------t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~  317 (321)
                            .....+++++++..++..+.++         ..|++||+.+++.+.++..+.....+.+++||+++.+
T Consensus       243 ~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~  316 (355)
T d2bbkh_         243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY  316 (355)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEE
T ss_pred             eeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEE
Confidence                  2345688999998877665443         2399999999999999877766667789999985433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.37  E-value=6.1e-11  Score=103.21  Aligned_cols=173  Identities=8%  Similarity=-0.045  Sum_probs=117.9

Q ss_pred             EecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC--CceeEEEEeCCe--EEEEE--CCEEEEEEcCCcEEEE
Q 020784          135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLH  208 (321)
Q Consensus       135 ~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~~--~~~~~--~~~I~iwd~~~~~~~~  208 (321)
                      ++.+++++++++       .+++|.|||+++++.+.++..+  ..+.++.|+++.  ++++.  ++.|++||+.+++.+.
T Consensus         4 ~~~~~~~l~~~~-------~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           4 LKAGHEYMIVTN-------YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCTTCEEEEEEE-------TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCCCcEEEEEc-------CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            456677788777       6799999999999999988763  368899999863  44554  4699999999998887


Q ss_pred             EEeccCCC------CceEEEeeCCCceEEEeec---------------------------------------------CC
Q 020784          209 QIETIANP------KGLCAVSQGVGSLVLVCPG---------------------------------------------LQ  237 (321)
Q Consensus       209 ~l~~~~~~------~~~~~~s~~~d~~~la~sG---------------------------------------------s~  237 (321)
                      ++......      ...++++++  +..+++.+                                             +.
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~D--G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eecccccccccCCceEEEEEecC--CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            77543211      112222222  22221110                                             01


Q ss_pred             CCc-------EEEEe-----------------------------------------------------------------
Q 020784          238 KGQ-------VRVEH-----------------------------------------------------------------  245 (321)
Q Consensus       238 dg~-------V~i~d-----------------------------------------------------------------  245 (321)
                      ++.       +.+|+                                                                 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
T d1jmxb_         155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  234 (346)
T ss_dssp             TSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             CCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence            111       11122                                                                 


Q ss_pred             --eCCcc--eEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          246 --YASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       246 --~~~~~--~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                        .....  ...+..|...+..+.+++++.+++.++ ++. |++||+.++++++.+..++....++|++||++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~  309 (346)
T d1jmxb_         235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNR-LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG  309 (346)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESE-EEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE
T ss_pred             EECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCe-EEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEE
Confidence              11111  112345666788899999998888877 456 999999999999999888888888999999999886

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.10  E-value=7.2e-10  Score=101.09  Aligned_cols=229  Identities=12%  Similarity=-0.010  Sum_probs=145.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCC--CCC------
Q 020784           86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ--YPL------  155 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~--~~d------  155 (321)
                      ..+.+..++|||++|.+...  +.|.++|+++++.....+..+......+.+.++++...++..+.+..  -.+      
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            35666778899999877654  55889999999876555432345677788888888544433222100  001      


Q ss_pred             ----CcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE-------------------------------------
Q 020784          156 ----NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-------------------------------------  192 (321)
Q Consensus       156 ----~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-------------------------------------  192 (321)
                          ..+..+|..+.+...++.....+..+.++++.  +++..                                     
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~  231 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNF  231 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCC
T ss_pred             ccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCE
Confidence                23567888888888777777777777776642  22221                                     


Q ss_pred             -----CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc---------eEEeeccc
Q 020784          193 -----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------TKFIMAHD  258 (321)
Q Consensus       193 -----~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~---------~~~l~~H~  258 (321)
                           ++.+.+++....+.+..+..+..+.+ +.++  +|+.+++++|..+++|.|||+....         ...+.++.
T Consensus       232 ~~v~~~~v~vvd~~~~~~v~~~IPvgksPhG-v~vS--PDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~  308 (441)
T d1qnia2         232 KTIGDSKVPVVDGRGESEFTRYIPVPKNPHG-LNTS--PDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP  308 (441)
T ss_dssp             BCCTTCCCCEEECSSSCSSEEEECCBSSCCC-EEEC--TTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC
T ss_pred             EEeCCCCcEEEEcccCCceEEEEeCCCCccC-ceEC--CCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec
Confidence                 12344444455556667776666554 3444  4668887789999999999975311         01111221


Q ss_pred             c---ceeEEEECCCCCEEEEEeCCCcEEEEEEcCC----------CcEEEEEe----CCCcceeE--EEeecCceEEEe
Q 020784          259 S---RIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEEC----CPSISAQS--GLWLSSAWLRVL  318 (321)
Q Consensus       259 ~---~V~~vafspdg~~las~S~Dgt~IrIWd~~t----------g~~i~~~~----~g~~~~~~--~~s~d~~~la~~  318 (321)
                      .   .....+|+++|....|...|.. |..|++..          -..+..+.    .||..+..  ++++||+||+..
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~ds~-v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFIDSQ-VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ccccCcccceecCCceEEEcccccce-EEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            1   2344689999999999999998 99999852          12444443    23332222  567999999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=5.8e-09  Score=95.74  Aligned_cols=75  Identities=13%  Similarity=0.018  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC---------C-cEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCC
Q 020784           83 SPPPTLLHISFNQDHGCFAAGTD---------H-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (321)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg~~---------~-gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~  152 (321)
                      .+...|.+++|||||++|+.+++         + .+.|||+++++... ... +.+.+..+.|++++..++.+.      
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~~-~~~~~~~~~~SPDG~~ia~~~------  130 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EER-IPNNTQWVTWSPVGHKLAYVW------  130 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSC-CCTTEEEEEECSSTTCEEEEE------
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc-ccc-CCccccccccccCcceeeEee------
Confidence            34567999999999999998764         1 25699998876532 222 467788999999999999876      


Q ss_pred             CCCCcEEEEeCCCCc
Q 020784          153 YPLNKVMIWDDHQSR  167 (321)
Q Consensus       153 ~~d~~v~iWD~~~~~  167 (321)
                        ++.+.+|+..+++
T Consensus       131 --~~~l~~~~~~~g~  143 (470)
T d2bgra1         131 --NNDIYVKIEPNLP  143 (470)
T ss_dssp             --TTEEEEESSTTSC
T ss_pred             --cccceEEECCCCc
Confidence              3556666655544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.93  E-value=7.1e-08  Score=85.36  Aligned_cols=228  Identities=5%  Similarity=-0.163  Sum_probs=131.9

Q ss_pred             CCeEEEEEcCCCCE--EEE-EcCC-c--EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCC---CCCCCC
Q 020784           86 PTLLHISFNQDHGC--FAA-GTDH-G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD---PQYPLN  156 (321)
Q Consensus        86 ~~V~~v~fs~dg~~--las-g~~~-g--v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~---~~~~d~  156 (321)
                      ++...++..+||+.  ++. .... .  +.+||.++++.+.....   +....+.+++++..+++++....   ....|+
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~---~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG---AFLSLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE---CTTCEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC---CCCCcceECCCCCEEEEEcccCccccccccCC
Confidence            34445566778774  332 2222 2  55668888877655553   33345788999998887752110   011367


Q ss_pred             cEEEEeCCCCcEEEEEeeCC--------ceeEEEEeCC--eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCce-----
Q 020784          157 KVMIWDDHQSRCIGELSFRS--------EVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGL-----  219 (321)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~--------~v~~v~~~~~--~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~-----  219 (321)
                      +|++||..+++.+..+..+.        ....+.|+++  .++++.  ++.|.+||+.+++.+..+..+......     
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA  176 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETT
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCc
Confidence            89999999999988876432        2345778875  466664  469999999999998887654321100     


Q ss_pred             EEEeeCCCceEEEeec-----------------------------------CCCCcEEEEeeCCcceEEee---cc----
Q 020784          220 CAVSQGVGSLVLVCPG-----------------------------------LQKGQVRVEHYASKRTKFIM---AH----  257 (321)
Q Consensus       220 ~~~s~~~d~~~la~sG-----------------------------------s~dg~V~i~d~~~~~~~~l~---~H----  257 (321)
                      ..+...+|+.++.+..                                   ..+|.+.+.+........+.   .+    
T Consensus       177 ~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             eEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccccccee
Confidence            0011111111111100                                   11233333333222221111   11    


Q ss_pred             ------ccceeEEEECCCCCEEEEEeCCC--------cEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEE
Q 020784          258 ------DSRIACFALTQDGQLLATSSTKG--------TLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLR  316 (321)
Q Consensus       258 ------~~~V~~vafspdg~~las~S~Dg--------t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la  316 (321)
                            ......+++++++..+.....++        ..|.+||..+++.++++..+.....+.+++||+.+.
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~l  329 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEE
Confidence                  11234688898887665443222        238899999999999887666666678999997543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.91  E-value=1.4e-07  Score=82.82  Aligned_cols=165  Identities=8%  Similarity=-0.016  Sum_probs=113.6

Q ss_pred             cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE-----------
Q 020784          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-----------  192 (321)
Q Consensus       126 ~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-----------  192 (321)
                      +.+.+..+++++++..+++......  ...+.|.+||..+++.+.++..... ..+.|+++.  ++++.           
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~--~~~~~v~v~D~~tg~~~~~~~~~~~-~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHH--SAIIQQWVLDAGSGSILGHVNGGFL-PNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCCccccccCCCCCEEEEEccccc--CCCceEEEEECCCCCEEEEEeCCCC-ccEEEcCCCCEEEEEeecCCccccccc
Confidence            3567778888999988876643211  1346799999999999988765543 367888764  44442           


Q ss_pred             CCEEEEEEcCCcEEEEEEeccCCCC-------ceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeeccccceeEEE
Q 020784          193 EQKIFVYNFADLKLLHQIETIANPK-------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA  265 (321)
Q Consensus       193 ~~~I~iwd~~~~~~~~~l~~~~~~~-------~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~va  265 (321)
                      ++.|.+||..+++.+..+..+....       ..+.+++++...+++ ....++.+.+|+.....   ...|...+.+++
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  171 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF-QFAAGPAVGLVVQGGSS---DDQLLSSPTCYH  171 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEE-EEcCCCceEEeeccCCe---EEEEeccceeEE
Confidence            2579999999999988887654332       234555554333333 23445566677655433   334556678999


Q ss_pred             ECCCCCE-EEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          266 LTQDGQL-LATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       266 fspdg~~-las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      |+|+|+. +++.+.|++ +.+|+..+++......
T Consensus       172 ~s~~g~~~~v~~~~dg~-~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGG-LAKTDHAGGAAGAGLV  204 (373)
T ss_pred             EecCCCcEEEEEcCCCe-EEEEEcCCceeeEEEe
Confidence            9999864 578899999 9999999998876653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=8.2e-09  Score=94.74  Aligned_cols=139  Identities=9%  Similarity=-0.051  Sum_probs=99.5

Q ss_pred             eEEEEeCCeEEEE-ECCEEEEEEcCCcEEEEEEeccC---CCCceEEEeeCCCceEEEeec--------CCCCcEEEEee
Q 020784          179 RSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIA---NPKGLCAVSQGVGSLVLVCPG--------LQKGQVRVEHY  246 (321)
Q Consensus       179 ~~v~~~~~~~~~~-~~~~I~iwd~~~~~~~~~l~~~~---~~~~~~~~s~~~d~~~la~sG--------s~dg~V~i~d~  246 (321)
                      .++.|.++.-++- .++.|.+||+.+++....+..+.   ....+.++...||+..|++..        +.+|.+.|||+
T Consensus        20 ~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            3456665543333 45689999999988766565432   112234444455667777521        34577889999


Q ss_pred             CCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc-------------------ceeEE
Q 020784          247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI-------------------SAQSG  307 (321)
Q Consensus       247 ~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~-------------------~~~~~  307 (321)
                      .++.+..+..|...+..+.|||||+++|..+ |+. +.+|++.+|+..+....+..                   ...+.
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~-l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCcccccccCCccccccccccCcceeeEee-ccc-ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9998889999999999999999999999876 677 99999999987764432221                   12346


Q ss_pred             EeecCceEEEee
Q 020784          308 LWLSSAWLRVLR  319 (321)
Q Consensus       308 ~s~d~~~la~~~  319 (321)
                      +|+||++||.++
T Consensus       178 wSPDGk~ia~~~  189 (470)
T d2bgra1         178 WSPNGTFLAYAQ  189 (470)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCccceeE
Confidence            899999999986

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=6.3e-06  Score=69.93  Aligned_cols=219  Identities=15%  Similarity=0.190  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeee-c-CC---ceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEE
Q 020784           88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-R-GG---GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~-~-~~---~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iW  161 (321)
                      -+.|++++||+++++-.. +.|++||.+ ++.+...... . .+   .-..+....+....+++..+     ..+.|.++
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~i~~~   98 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIY   98 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEE
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccC-----Cccccccc
Confidence            468999999998877654 558888854 3332222110 0 00   11223333444444444322     23677777


Q ss_pred             eCCCCcEEEEEeeC--CceeEEEEeCC-eEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecC
Q 020784          162 DDHQSRCIGELSFR--SEVRSVKLRRD-RIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (321)
Q Consensus       162 D~~~~~~~~~~~~~--~~v~~v~~~~~-~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs  236 (321)
                      +. .++....+...  ..+..+++.++ .++++..  ..+.+++. +++.+.++...........+..++++.++++ ..
T Consensus        99 ~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~-d~  175 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS-DN  175 (279)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEE-EG
T ss_pred             cc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEee-ec
Confidence            75 45555555433  34667777665 3444443  46777775 4566777755444444555666667777763 67


Q ss_pred             CCCcEEEEeeCCcceEEee--ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC---CcceeEEEeec
Q 020784          237 QKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP---SISAQSGLWLS  311 (321)
Q Consensus       237 ~dg~V~i~d~~~~~~~~l~--~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g---~~~~~~~~s~d  311 (321)
                      ..+.|.+++...+.+.++.  ++......|++.++|+++++-+.++..|++|+ .+|+.+.++...   .....+++.+|
T Consensus       176 ~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             cccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            7788999987766565552  45567899999999998887655443399998 679988887533   23456678888


Q ss_pred             CceEE
Q 020784          312 SAWLR  316 (321)
Q Consensus       312 ~~~la  316 (321)
                      |+++.
T Consensus       255 G~l~V  259 (279)
T d1q7fa_         255 GSVVL  259 (279)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            87543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.80  E-value=2.1e-06  Score=76.10  Aligned_cols=228  Identities=11%  Similarity=0.082  Sum_probs=124.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEe-eeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe--
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD--  162 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD--  162 (321)
                      ..+..++|++|+++|.+...+.+..|.++........ .....+.-..+.++++++.+.++....    ..+.|..+.  
T Consensus        40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~----~~~~v~~~~~~  115 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ----PPYAVYANPFY  115 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS----TTCCEEEEEES
T ss_pred             CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecC----CCCEEEEeEcc
Confidence            3456799999999998887777878877643322221 111122223334445555444433221    123344333  


Q ss_pred             ----------CCCC-cE---EEEE--eeCCceeEEEEeCC--eEEEEEC--CEEEEEEcCC-cEE--EEEEeccCCCCce
Q 020784          163 ----------DHQS-RC---IGEL--SFRSEVRSVKLRRD--RIIVVLE--QKIFVYNFAD-LKL--LHQIETIANPKGL  219 (321)
Q Consensus       163 ----------~~~~-~~---~~~~--~~~~~v~~v~~~~~--~~~~~~~--~~I~iwd~~~-~~~--~~~l~~~~~~~~~  219 (321)
                                +... +.   ....  +....+.++.|+++  .++++..  +.|.+|++.. +++  ...+.......+-
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence                      2211 11   1111  12235778999876  4555543  5899998743 332  2223322222334


Q ss_pred             EEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEee--------------------ccccceeEEEECCCCCEEEEEeC-
Q 020784          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------------------AHDSRIACFALTQDGQLLATSST-  278 (321)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~--------------------~H~~~V~~vafspdg~~las~S~-  278 (321)
                      ..+.+++++.++.+++..+++|.+|++.......+.                    .+......+.++|||++|.++.. 
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            445556666766656888899999888654322111                    12233568999999999877632 


Q ss_pred             -----CCcEEEEEEcCC-CcEEEEE------eCCCcceeEEEee-cCceEEEe
Q 020784          279 -----KGTLVRIFNTLD-GTLLQEE------CCPSISAQSGLWL-SSAWLRVL  318 (321)
Q Consensus       279 -----Dgt~IrIWd~~t-g~~i~~~------~~g~~~~~~~~s~-d~~~la~~  318 (321)
                           .+. |-+|++.. +.+.+..      ..|.....+.+++ +|+||.|+
T Consensus       276 ~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va  327 (365)
T d1jofa_         276 NKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             SSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             CCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEE
Confidence                 223 66677654 3332211      1244455577786 89999886

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.1e-05  Score=67.23  Aligned_cols=216  Identities=12%  Similarity=0.001  Sum_probs=118.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-Cc---EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           85 PPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        85 ~~~V~~v~fs~dg~~lasg~~-~g---v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ...+.+-+|||||++||-... .+   +.+.+...........  +.+......+++++..++.......    ...+..
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~i~~~~~~~~----~~~~~~  111 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTG----SLNLYV  111 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEECTTS----SCEEEE
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee--eecccccceecCCCCeeeEeeecCC----ccceee
Confidence            456888999999999996654 32   3344545444332222  3567778889999999888774321    122333


Q ss_pred             EeCCCCcEEEEEeeCCceeEEEEe--CCeEEEEEC----CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          161 WDDHQSRCIGELSFRSEVRSVKLR--RDRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~----~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +.....................+.  .+.......    ..|.++++...... .+....  .........+++..+++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~--~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         112 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEE
T ss_pred             cccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeeccc--ccccccccccccceeEEE
Confidence            333333333322222233333333  233443332    26777777654332 222221  222233444555666665


Q ss_pred             cCCCCcEEEEee--CCcceEEeeccccceeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCcEEEEEeCCCcceeEEEee
Q 020784          235 GLQKGQVRVEHY--ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEECCPSISAQSGLWL  310 (321)
Q Consensus       235 Gs~dg~V~i~d~--~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg--t~IrIWd~~tg~~i~~~~~g~~~~~~~~s~  310 (321)
                      ...+|...++..  ..+. ..+..+........|||||++||-.+..+  ..|.++++..++.. .+.. ........+|
T Consensus       189 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~-~~g~~~~p~W  265 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPA-TDGQVKFPAW  265 (269)
T ss_dssp             EECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCC-SSSEEEEEEE
T ss_pred             eecCCceeeeEeeccccc-ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeC-CCCcEEeEEe
Confidence            566666666443  3333 34445666778899999999987655432  23889999877764 3432 2333334556


Q ss_pred             cC
Q 020784          311 SS  312 (321)
Q Consensus       311 d~  312 (321)
                      ++
T Consensus       266 SP  267 (269)
T d2hqsa1         266 SP  267 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.70  E-value=1.2e-05  Score=68.95  Aligned_cols=218  Identities=12%  Similarity=0.026  Sum_probs=129.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeE-EeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF-RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      -+..++++|||+++++...++ +||.+++..... ...  ..+....+++.++++++++..       .++.+.+|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~-~I~~i~p~g~~~~~~~--~~~~~~gla~~~dG~l~v~~~-------~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVG-EIVSITPDGNQQIHAT--VEGKVSGLAFTSNGDLVATGW-------NADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTT-EEEEECTTCCEEEEEE--CSSEEEEEEECTTSCEEEEEE-------CTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCC-EEEEEeCCCCEEEEEc--CCCCcceEEEcCCCCeEEEec-------CCceEEEEEecc
Confidence            578899999999998887755 455555443322 222  367788889999998776655       346677777543


Q ss_pred             C--cEEEEEe--eCCceeEEEEeCCeEEEEE---CCEEEEEEcCCcEEEEEEecc--------CCCCceEEEeeCCCceE
Q 020784          166 S--RCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI--------ANPKGLCAVSQGVGSLV  230 (321)
Q Consensus       166 ~--~~~~~~~--~~~~v~~v~~~~~~~~~~~---~~~I~iwd~~~~~~~~~l~~~--------~~~~~~~~~s~~~d~~~  230 (321)
                      .  .......  ....+..+.+.++..+.+.   .+.+..+|...+.........        ........+..+++..+
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence            2  2222222  2235677888776544443   257888888766543333221        11123345556554333


Q ss_pred             EEeecCCCCcEEEEeeCCcc-eE--EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEE--EEEeCCCc-ce
Q 020784          231 LVCPGLQKGQVRVEHYASKR-TK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEECCPSI-SA  304 (321)
Q Consensus       231 la~sGs~dg~V~i~d~~~~~-~~--~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i--~~~~~g~~-~~  304 (321)
                      +  +.+..+.|..++..... ..  ....+......++|+++|.++++...+++ |..++-. |+..  .+...+.. ..
T Consensus       179 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p~-G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         179 V--SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             E--EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             e--ecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECCC-CCEEEEEecCCCCCCce
Confidence            3  36777777776654322 11  22234455788999999999888888888 7777654 4432  22222222 33


Q ss_pred             eEEE---eecCceEEEe
Q 020784          305 QSGL---WLSSAWLRVL  318 (321)
Q Consensus       305 ~~~~---s~d~~~la~~  318 (321)
                      .++|   ..|++.|.+.
T Consensus       255 ~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             EEEECCSTTTTTEEEEE
T ss_pred             EEEEcCCCCCCCEEEEE
Confidence            4466   4577777654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.61  E-value=5.7e-08  Score=88.32  Aligned_cols=207  Identities=8%  Similarity=0.010  Sum_probs=130.4

Q ss_pred             EEEEcC-CcEEEEEecCCceeEEeee-e----------------------------cCCceEEEEEecCCCeEEEEeCCC
Q 020784          100 FAAGTD-HGFRIYNCDPFREIFRRDF-E----------------------------RGGGIGVVEMLFRCNILALVGGGP  149 (321)
Q Consensus       100 lasg~~-~gv~vw~~~~~~~~~~~~~-~----------------------------~~~~v~~v~~~~~~~~~~~~sg~~  149 (321)
                      |++|+. +.|+||++.+++.+..... .                            |..........++++.+.+...  
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~--   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK--   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence            556666 4488999988876544321 0                            1112223333567777766653  


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEee--CCceeEEEEeCC--eEEEE--ECCE------------------EEEEEcCCcE
Q 020784          150 DPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRD--RIIVV--LEQK------------------IFVYNFADLK  205 (321)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~~--~~~~~--~~~~------------------I~iwd~~~~~  205 (321)
                          .++.|.++|+++++....+..  ...+..+.|+++  ..+++  .+..                  +..+|..+++
T Consensus        92 ----~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~  167 (441)
T d1qnia2          92 ----ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD  167 (441)
T ss_dssp             ----TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred             ----CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence                358899999999998776654  357888888754  22332  3333                  3558888888


Q ss_pred             EEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCCEEEEEeCCCcEEE
Q 020784          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (321)
Q Consensus       206 ~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~~las~S~Dgt~Ir  284 (321)
                      ...++.....+ ..+++++++  .++.++......+.+++..+.. ...+..+ +....++++|+|+++..++ ++. +.
T Consensus       168 v~~qI~v~~~p-~~v~~spdG--k~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~~-~~v-~v  241 (441)
T d1qnia2         168 VAWQVIVDGNL-DNTDADYTG--KYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD-SKV-PV  241 (441)
T ss_dssp             EEEEEEESSCC-CCEEECSSS--SEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCTT-CCC-CE
T ss_pred             eeEEEecCCCc-cceEECCCC--CEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEEeCC-CCc-EE
Confidence            87777665443 345666554  5555433333333333332222 2122111 2234567889999876554 667 88


Q ss_pred             EEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          285 IFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       285 IWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      |++....+.++++..+.....+.+++||+|+.++
T Consensus       242 vd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~  275 (441)
T d1qnia2         242 VDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIAN  275 (441)
T ss_dssp             EECSSSCSSEEEECCBSSCCCEEECTTSCEEEEE
T ss_pred             EEcccCCceEEEEeCCCCccCceECCCCCEEEEe
Confidence            9988888888999888888889999999999876

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.46  E-value=3.5e-05  Score=67.96  Aligned_cols=193  Identities=8%  Similarity=-0.036  Sum_probs=102.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CcEEEEEecCCceeE-Eeeee---cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIF-RRDFE---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~-~~~~~---~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      ..+.++.|+|||++|++...  +.|.+|+.+...... .....   .+..-..+.++++++.+.++..      .+++|.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e------~~~~V~  218 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME------AGNRIC  218 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET------TTTEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc------CCCEEE
Confidence            35789999999998887764  567788775443222 21111   2345677888899988877764      358899


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCC
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (321)
                      +||...+..........                   +.++.......  .............+..++|+.+|.++...+.
T Consensus       219 v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         219 EYVIDPATHMPVYTHHS-------------------FPLIPPGIPDR--DPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEEECTTTCCEEEEEEE-------------------EESSCTTCCCB--CTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             EEEecCCCceEEEEeee-------------------ecccccccccc--ccccccccCCccceEECCCCCEEEEEcccCC
Confidence            99887654321111100                   00000000000  0000000111233444556666665432222


Q ss_pred             -----cEEEEeeCC-cceEE---e---eccccceeEEEECC-CCCEEEEE-eCCCcEEEEEEcCCC--cEEEEEeCCCcc
Q 020784          240 -----QVRVEHYAS-KRTKF---I---MAHDSRIACFALTQ-DGQLLATS-STKGTLVRIFNTLDG--TLLQEECCPSIS  303 (321)
Q Consensus       240 -----~V~i~d~~~-~~~~~---l---~~H~~~V~~vafsp-dg~~las~-S~Dgt~IrIWd~~tg--~~i~~~~~g~~~  303 (321)
                           .|..++... +.+..   +   .......+.++|+| +|++|+.+ ..+++ |.||++...  ..+.+++.....
T Consensus       278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~-v~v~~~~~~~l~~~~~~~vp~p~  356 (365)
T d1jofa_         278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW-LEIYRWKDEFLHRVARVRIPEPG  356 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE-EEEEEEETTEEEEEEEEECCSTT
T ss_pred             CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe-EEEEEEeCCcCcEEEEEECCCCC
Confidence                 255555443 22221   1   11234578899998 79977666 45667 999987654  344555554444


Q ss_pred             eeE
Q 020784          304 AQS  306 (321)
Q Consensus       304 ~~~  306 (321)
                      +..
T Consensus       357 ~~~  359 (365)
T d1jofa_         357 FGM  359 (365)
T ss_dssp             EEE
T ss_pred             CCe
Confidence            444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=9.5e-05  Score=61.17  Aligned_cols=185  Identities=13%  Similarity=0.044  Sum_probs=110.4

Q ss_pred             CCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEEC----CEEEEEE
Q 020784          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE----QKIFVYN  200 (321)
Q Consensus       127 ~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~----~~I~iwd  200 (321)
                      ...+..-.|+++++.+|.+....    ....+.+.+...+................|+++.  ++....    ..+..+.
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCceeeeEECCCCCEEEEEEeec----cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence            55677778999999999987543    2345777777777765555566677788888764  333322    2344444


Q ss_pred             cCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE--EeeCCcceEEeeccccceeEEEECCCCCEEEEEeC
Q 020784          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (321)
Q Consensus       201 ~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~  278 (321)
                      ............. .......++..++  .+.+....+|...|  .+........+..+........|+|+|+.++..+.
T Consensus       114 ~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         114 LASGQIRQVTDGR-SNNTEPTWFPDSQ--NLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             TTTCCEEECCCCS-SCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             cccccceeeeecc-ccccccccccccc--cceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence            4433332222211 1112233444433  33323455565555  55555666667777788889999999999888777


Q ss_pred             CCcEEEEE--EcCCCcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          279 KGTLVRIF--NTLDGTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       279 Dgt~IrIW--d~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ++....||  +...+.. +..........-.+|+||++|+..+
T Consensus       191 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             CSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             cCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEE
Confidence            66324454  5555544 3232233334458999999998754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.27  E-value=6.4e-05  Score=62.73  Aligned_cols=213  Identities=8%  Similarity=-0.084  Sum_probs=115.2

Q ss_pred             EEEEEcCCCCEEEEEc-CCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           89 LHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~-~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      ..|++++||+++++.. ..+ +..++....... .........-..+++..++++.++-.       ..+.+++++..++
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~i~v~d~-------~~~~i~~~~~~~~   88 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-------NNRVVTLAAGSNN   88 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCCEEEEET-------TTEEEEECTTCSC
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCCEEEeee-------eeceeeeeeeccc
Confidence            5899999999766554 444 444444333221 11110011223456666666543322       2356777666655


Q ss_pred             cEEEEEeeCCceeEEEEeCC-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE
Q 020784          167 RCIGELSFRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (321)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i  243 (321)
                      ..+........+..+++.++ .++++.  ...+..++...................+++  ++++.++++ ...++.|..
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--~~~g~~~v~-~~~~~~i~~  165 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV--DNSGNVYVT-DTDNNRVVK  165 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE--CTTCCEEEE-EGGGTEEEE
T ss_pred             eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeee--cCCCCEeee-ccccccccc
Confidence            55443333356788888775 344443  246777766443321111111111223344  445566553 566677877


Q ss_pred             EeeCCcceEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCC--CcceeEEEeecCce
Q 020784          244 EHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCP--SISAQSGLWLSSAW  314 (321)
Q Consensus       244 ~d~~~~~~~~l~-~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g--~~~~~~~~s~d~~~  314 (321)
                      ++........+. ..-.....|++.++|.++++....+. |..++...+. ...+...  .....+++..+|..
T Consensus       166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTV  237 (260)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCSC-CEECCCCSCCCEEEEEECTTCCE
T ss_pred             cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCE
Confidence            887655444433 45567899999999999998887777 7777655433 2222222  23455666667653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=0.00055  Score=57.72  Aligned_cols=118  Identities=11%  Similarity=0.147  Sum_probs=84.8

Q ss_pred             CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEe-
Q 020784          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-  184 (321)
Q Consensus       106 ~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-  184 (321)
                      ..|.|-|+.......++..  ...-  .-++|..+.+|+-+|        .++.|+|+++.+.+..+.+...|.-..|- 
T Consensus        45 ~~VvIidl~n~~~~~Rrpi--~Ads--AIMhP~~~IiALrag--------~~LQiFnletK~klks~~~~e~VvfWkWis  112 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI--SADS--AIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  112 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC--CCSE--EEECSSSSEEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEESS
T ss_pred             ceEEEEECCCCCcceeccc--chhh--hhcCCCCcEEEEecC--------CeEEEEehhHhhhhceEEcCCCcEEEEecC
Confidence            4588999977665555554  2332  335688888888773        68999999999999999999988777774 


Q ss_pred             CCeEEEEECCEEEEEEcCC-cEEEEEEeccCC--CCceEEEeeCCCceEEEeec
Q 020784          185 RDRIIVVLEQKIFVYNFAD-LKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPG  235 (321)
Q Consensus       185 ~~~~~~~~~~~I~iwd~~~-~~~~~~l~~~~~--~~~~~~~s~~~d~~~la~sG  235 (321)
                      .+.+.++++..|+=|++.. .+..+.|+.|..  ...++.+..+++.++++..|
T Consensus       113 ~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~G  166 (327)
T d1utca2         113 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  166 (327)
T ss_dssp             SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEe
Confidence            5678889999999999943 356666665543  23456666666666665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.19  E-value=0.00036  Score=59.31  Aligned_cols=185  Identities=9%  Similarity=-0.067  Sum_probs=106.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEe--eeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEE
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRR--DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~i  160 (321)
                      ....+.+++|++||++++++.. +.+.+|+..........  ..........+.+..+++.++.-.       ..+.+..
T Consensus        66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~-------~~~~i~~  138 (302)
T d2p4oa1          66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS-------YRGAIWL  138 (302)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET-------TTTEEEE
T ss_pred             CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeecc-------cccccee
Confidence            3457999999999999888766 55667766543322111  111233455666667776555444       3477888


Q ss_pred             EeCCCCcEEEEEee-----------CCceeEEEEeCCeEEEEEC--CEEEEEEcCCcEEE---EEEeccCCCCceEEEee
Q 020784          161 WDDHQSRCIGELSF-----------RSEVRSVKLRRDRIIVVLE--QKIFVYNFADLKLL---HQIETIANPKGLCAVSQ  224 (321)
Q Consensus       161 WD~~~~~~~~~~~~-----------~~~v~~v~~~~~~~~~~~~--~~I~iwd~~~~~~~---~~l~~~~~~~~~~~~s~  224 (321)
                      +|...+........           ...+..+.+..+.++++..  +.|..+++......   ..+.....+. -+++  
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pd-gia~--  215 (302)
T d2p4oa1         139 IDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNID-DFAF--  215 (302)
T ss_dssp             EETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCS-SEEE--
T ss_pred             eeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCc-ceEE--
Confidence            88777654322211           1134567777887777753  58888877543211   1222222222 2444  


Q ss_pred             CCCceEEEeecCCCCcEEEEeeCCcceEE--eeccccceeEEEE---CCCCCEEEEEeCC
Q 020784          225 GVGSLVLVCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFAL---TQDGQLLATSSTK  279 (321)
Q Consensus       225 ~~d~~~la~sGs~dg~V~i~d~~~~~~~~--l~~H~~~V~~vaf---spdg~~las~S~D  279 (321)
                      +.++.+.++ ...++.|..++...+....  ....-..+++++|   ++|++.|..++..
T Consensus       216 d~dG~l~va-~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         216 DVEGNLYGA-THIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             BTTCCEEEE-CBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCEEEE-EcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            445566653 5567778777665443222  2334456899999   6788766544433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.99  E-value=0.003  Score=52.66  Aligned_cols=152  Identities=13%  Similarity=0.144  Sum_probs=92.5

Q ss_pred             eEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEEEeeC---CceeEEEEeCCe-EEEEEC--CEEEEEEcCC
Q 020784          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRDR-IIVVLE--QKIFVYNFAD  203 (321)
Q Consensus       130 v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~~~~~---~~v~~v~~~~~~-~~~~~~--~~I~iwd~~~  203 (321)
                      ...+++..++++++.-.       ..+.+.++|.. ++.+..+...   .....+++.++. ++++..  +.|++||.. 
T Consensus       116 p~~~avd~~G~i~v~~~-------~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-  186 (279)
T d1q7fa_         116 PRGVTVDNKGRIIVVEC-------KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-  186 (279)
T ss_dssp             EEEEEECTTSCEEEEET-------TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-
T ss_pred             cceeccccCCcEEEEee-------ccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-
Confidence            34555556665554433       23567777653 4555555332   245667777654 444432  589999975 


Q ss_pred             cEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEeec--cccceeEEEECCCCCEEEEEeCCCc
Q 020784          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGT  281 (321)
Q Consensus       204 ~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~--H~~~V~~vafspdg~~las~S~Dgt  281 (321)
                      ++.+.++...........++.++++.++++-...++.|.+++...+-+.++..  .....+.|++.+||.++++ +.+++
T Consensus       187 G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~  265 (279)
T d1q7fa_         187 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR  265 (279)
T ss_dssp             CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred             CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCe
Confidence            56666764322222345566677777776423344568888765444445533  2346899999999987664 56888


Q ss_pred             EEEEEEcCCCc
Q 020784          282 LVRIFNTLDGT  292 (321)
Q Consensus       282 ~IrIWd~~tg~  292 (321)
                       |++|......
T Consensus       266 -v~~fr~~~~~  275 (279)
T d1q7fa_         266 -LYIYRYVQLA  275 (279)
T ss_dssp             -EEEEECSCCC
T ss_pred             -EEEEEeeeec
Confidence             9999987653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=0.00045  Score=57.31  Aligned_cols=189  Identities=7%  Similarity=-0.008  Sum_probs=107.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEE-EEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~gv~-vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      ....++++++|+++++.....+. +++-.....  ............+++..++++++.-.       ..+.+.+++...
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~--~~~~~~~~~p~~iavd~~g~i~v~d~-------~~~~~~~~~~~~  128 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT--VLPFDGLNYPEGLAVDTQGAVYVADR-------GNNRVVKLAAGS  128 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCE--ECCCCSCCSEEEEEECTTCCEEEEEG-------GGTEEEEECTTC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeecccee--eeeeeeeeecccccccccceeEeecc-------cccccccccccc
Confidence            34578999999988887766543 443333322  22221123456677777777655433       235566666554


Q ss_pred             CcEEE-EEeeCCceeEEEEeCC-eEEEEE--CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcE
Q 020784          166 SRCIG-ELSFRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (321)
Q Consensus       166 ~~~~~-~~~~~~~v~~v~~~~~-~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V  241 (321)
                      ..... ....-..+..+.+.++ .++++.  .+.|..++....... .+.. ........+..++++.+++ +....+.|
T Consensus       129 ~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~p~gi~~d~~g~l~v-sd~~~~~i  205 (260)
T d1rwia_         129 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPF-TDITAPWGIAVDEAGTVYV-TEHNTNQV  205 (260)
T ss_dssp             SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCC-SSCCSEEEEEECTTCCEEE-EETTTTEE
T ss_pred             ceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eeec-cccCCCccceeeeeeeeee-eecCCCEE
Confidence            33211 1122235677888765 455543  358899987654332 2211 1112234555566667766 36667777


Q ss_pred             EEEeeCCcceEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 020784          242 RVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (321)
Q Consensus       242 ~i~d~~~~~~~~l~-~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~  288 (321)
                      ..++........+. ..-.....|+++++|.++++-..+++ |+.++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~r-I~~i~~  252 (260)
T d1rwia_         206 VKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR-VVKLTS  252 (260)
T ss_dssp             EEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTE-EEEECC
T ss_pred             EEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCE-EEEEeC
Confidence            76665444433332 23356789999999998888776666 665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.86  E-value=0.0059  Score=51.95  Aligned_cols=204  Identities=8%  Similarity=-0.001  Sum_probs=114.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~  165 (321)
                      .+..++|.++|++.++-...+ |..|+.+..+...... ........+++..+++++++..++..   ..+.+...|...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~---~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFK---STGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSS---SCCEEEEECTTS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCc---cceeEEEEcCCC
Confidence            467899999999777765555 4455544443322211 12345667788888877766543311   124455555555


Q ss_pred             CcEEEEEeeC---CceeEEEEeCCe-EEEEEC--------CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          166 SRCIGELSFR---SEVRSVKLRRDR-IIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       166 ~~~~~~~~~~---~~v~~v~~~~~~-~~~~~~--------~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      +.........   ..+..+.+.++. +++...        +.+..++..... +..+.....  ....+..++|+..|.+
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~--~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNIS--VANGIALSTDEKVLWV  193 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEES--SEEEEEECTTSSEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccc--eeeeeeeccccceEEE
Confidence            5443333221   235567777654 444321        235445443322 233222111  1223344445554433


Q ss_pred             ecCCCCcEEEEeeCCc--ceEE-------eeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeC
Q 020784          234 PGLQKGQVRVEHYASK--RTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECC  299 (321)
Q Consensus       234 sGs~dg~V~i~d~~~~--~~~~-------l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~  299 (321)
                      +-+..+.|..+++...  ....       ..........+++..+|++.++....+. |.+|| .+|+.+.++..
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~  266 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILI  266 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEEC
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeC
Confidence            4667788888876532  1111       1111233678999999999888887888 99999 57999988864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.86  E-value=0.0047  Score=52.55  Aligned_cols=198  Identities=12%  Similarity=0.115  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCEEEEEcC-CcEEEEEecCCceeEEeeeecCC----ceEEEEEecCCCeEEEEeCCCCC------C--CC
Q 020784           88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGPDP------Q--YP  154 (321)
Q Consensus        88 V~~v~fs~dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~----~v~~v~~~~~~~~~~~~sg~~~~------~--~~  154 (321)
                      -..++|.+||..|.++.. +++..++.+.......... .++    ....+.+..++++.++-.++...      .  -.
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~-~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecc-ccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            457999999986665554 6777777665433221111 111    12345667777766543322110      0  01


Q ss_pred             CCcEEEEeCCCCcEEEEEeeCCceeEEEEeCC------eEEEEE--CCEEEEEEcCC-cEEEE--EEeccCC-CC-ceEE
Q 020784          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD------RIIVVL--EQKIFVYNFAD-LKLLH--QIETIAN-PK-GLCA  221 (321)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~------~~~~~~--~~~I~iwd~~~-~~~~~--~l~~~~~-~~-~~~~  221 (321)
                      .+.|..++.+ ++.......-.....++|.++      .++++.  .+.|..|++.. +.+..  .+..... .. .--.
T Consensus       152 ~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            2334444432 333322222223456777643      366664  35888888743 33211  1111111 11 1123


Q ss_pred             EeeCCCceEEEeecCCCCcEEEEeeCCcc-eEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEEEcC
Q 020784          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~V~i~d~~~~~-~~~l~~H~~~V~~vafspdg~-~las~S~Dgt~IrIWd~~  289 (321)
                      +..+.++++.++ ....|.|.+++-..+. ...+......+++++|.||++ +++|.+..|+ |..+++.
T Consensus       231 iavD~~GnlyVa-~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~-i~~~~~~  298 (314)
T d1pjxa_         231 MDFDEDNNLLVA-NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEE-EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECS
T ss_pred             eEEecCCcEEEE-EcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCc-EEEEECC
Confidence            444556666653 4556788888876555 445666667899999999986 6677777777 6666654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.85  E-value=0.0059  Score=51.91  Aligned_cols=223  Identities=11%  Similarity=0.071  Sum_probs=123.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-------c-EEEEEecCCceeEEeeee---cCCceEEEEEecCCCeEEEEeCCCCCCCCC
Q 020784           87 TLLHISFNQDHGCFAAGTDH-------G-FRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~~-------g-v~vw~~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d  155 (321)
                      ....++|.+||+++++....       + |..||.++..........   ..+.-..+.+..+++.+.++..       .
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~   91 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------R   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------T
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------C
Confidence            35678999999987765442       2 445555555433222110   0112234677777887777762       3


Q ss_pred             CcEEEEeCCCCcEEEEEe-eCC----ceeEEEEeCCe-EEEEEC---------------CEEEEEEcC-CcEEEEEEecc
Q 020784          156 NKVMIWDDHQSRCIGELS-FRS----EVRSVKLRRDR-IIVVLE---------------QKIFVYNFA-DLKLLHQIETI  213 (321)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~-~~~----~v~~v~~~~~~-~~~~~~---------------~~I~iwd~~-~~~~~~~l~~~  213 (321)
                      +.|...|.+.+....... ...    .+..+.+.++. +++...               ..-++|-+. +++.......-
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~  171 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF  171 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCc
Confidence            568888876543221111 111    24557777654 444321               112344332 23333222221


Q ss_pred             CCCCceEEEeeCCCc--eEEEeecCCCCcEEEEeeCC-cceE------Eeec-cccceeEEEECCCCCEEEEEeCCCcEE
Q 020784          214 ANPKGLCAVSQGVGS--LVLVCPGLQKGQVRVEHYAS-KRTK------FIMA-HDSRIACFALTQDGQLLATSSTKGTLV  283 (321)
Q Consensus       214 ~~~~~~~~~s~~~d~--~~la~sGs~dg~V~i~d~~~-~~~~------~l~~-H~~~V~~vafspdg~~las~S~Dgt~I  283 (321)
                      ..+ .-+++++++++  ..|.++.+..+.|..+++.. +.+.      .+.+ +......+++..+|++.++....+. |
T Consensus       172 ~~p-NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-I  249 (314)
T d1pjxa_         172 QFP-NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-I  249 (314)
T ss_dssp             SSE-EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-E
T ss_pred             cee-eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-E
Confidence            111 23566666543  23333466777787766542 2222      1111 2334678999999998887776777 9


Q ss_pred             EEEEcCCCcEEEEEeCC-CcceeEEEeecCceEEEe
Q 020784          284 RIFNTLDGTLLQEECCP-SISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       284 rIWd~~tg~~i~~~~~g-~~~~~~~~s~d~~~la~~  318 (321)
                      ++||-..++.+.++... ...+.++|..|++-|-|.
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence            99999988877777654 344556777788766553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00086  Score=60.75  Aligned_cols=225  Identities=7%  Similarity=-0.030  Sum_probs=127.4

Q ss_pred             EEcCCCCEEEEEcCCcEEEEEecCCceeEEeeee--cCCceEEEEEecCCCeEEEEeCCCCC--CCCCCcEEEEeCCCCc
Q 020784           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDP--QYPLNKVMIWDDHQSR  167 (321)
Q Consensus        92 ~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~sg~~~~--~~~d~~v~iWD~~~~~  167 (321)
                      .|.+|+.++....++.+.+||+.+++........  ....+....++++++.+++.......  .+..+.+.|+|+.++.
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            4667777665555566889998877653322211  12245556788999988877632210  1134788999999887


Q ss_pred             EEEEEee---CCceeEEEEeCC--eEEEEECCEEEEEEcCCcEEEEEEeccCCCC----------------ceEEEeeCC
Q 020784          168 CIGELSF---RSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPK----------------GLCAVSQGV  226 (321)
Q Consensus       168 ~~~~~~~---~~~v~~v~~~~~--~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~----------------~~~~~s~~~  226 (321)
                      .......   ...+....|+|+  .++.+.++.|.+.+...++.++.........                .-.++-+.|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            5432221   123444667765  4666778899999887766555443221110                013444556


Q ss_pred             CceEEEeecCCCCc---------------------------------EEEEeeCCcceEE-------eeccccceeEEEE
Q 020784          227 GSLVLVCPGLQKGQ---------------------------------VRVEHYASKRTKF-------IMAHDSRIACFAL  266 (321)
Q Consensus       227 d~~~la~sGs~dg~---------------------------------V~i~d~~~~~~~~-------l~~H~~~V~~vaf  266 (321)
                      |+..||+.-..+..                                 +.++|+..+....       .......+..+.|
T Consensus       183 Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W  262 (465)
T d1xfda1         183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (465)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEE
Confidence            66777763222222                                 2224443322111       1122335788999


Q ss_pred             CCCCCEEEEEeC-CC--cEEEEEEcCCCcEEEEEeCCCc------ceeEEEeecCceEE
Q 020784          267 TQDGQLLATSST-KG--TLVRIFNTLDGTLLQEECCPSI------SAQSGLWLSSAWLR  316 (321)
Q Consensus       267 spdg~~las~S~-Dg--t~IrIWd~~tg~~i~~~~~g~~------~~~~~~s~d~~~la  316 (321)
                      ++++++++.... +.  ..|.++|..+|++...+.....      .....+++||+.+.
T Consensus       263 ~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             cCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence            999987766432 21  2378899999987655432222      12337788887544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.63  E-value=0.013  Score=49.14  Aligned_cols=188  Identities=13%  Similarity=0.023  Sum_probs=108.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecC---CceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEe
Q 020784           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD  162 (321)
                      ..+.++++.++|.++++ +.+++.++|.++++..........   .....+.+.+++++.+.......   ..+.-.+|.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~---~~~~g~l~~  134 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA---ETGAGSIYH  134 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC---CTTCEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc---cccceeEee
Confidence            47889999999987765 467899999988875433221111   13455666777776554432211   224456676


Q ss_pred             CCCCcEEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEcCC------cEEEEEEeccCCCCceEEEeeCCCceEEE
Q 020784          163 DHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD------LKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~------~~~~~~l~~~~~~~~~~~~s~~~d~~~la  232 (321)
                      ...++....+..-.....+.++++  .++++.  .+.|..|++..      ++....+.........-.+..+.++++.+
T Consensus       135 ~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         135 VAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             EETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             ecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence            666665444433334566788765  355554  36888888732      11111112111122233445566666655


Q ss_pred             eecCCCCcEEEEeeCCcceEEeeccccceeEEEEC-CCCC-EEEEEeC
Q 020784          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDGQ-LLATSST  278 (321)
Q Consensus       233 ~sGs~dg~V~i~d~~~~~~~~l~~H~~~V~~vafs-pdg~-~las~S~  278 (321)
                      + .-..|.|..++-..+.+..+.--...++++||- +|++ +++|.+.
T Consensus       215 a-~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         215 A-RWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             E-EETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             e-eeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            3 445567888886665555555444679999996 6754 5565443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.55  E-value=0.013  Score=47.70  Aligned_cols=199  Identities=11%  Similarity=0.008  Sum_probs=96.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC----C-cEEEE--EecCCceeEEeeee------cCCceEEEEEecCCCeEEEEeCCCC
Q 020784           84 PPPTLLHISFNQDHGCFAAGTD----H-GFRIY--NCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPD  150 (321)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasg~~----~-gv~vw--~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~sg~~~  150 (321)
                      +...+...+|||||++||-...    . ...||  +...++.. .....      .........++++++.++.......
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~-~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  117 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK-RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP  117 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE-ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred             CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE-EeeecCCCccCccccccccccCCCCCEEEEEEccCC
Confidence            3456888999999999985432    1 22344  44444332 11110      0112345678889988887654321


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEeeCCceeEEEEeCCeEEEEEC--------------CEEEEEEcCCcEEEEEEeccCCC
Q 020784          151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE--------------QKIFVYNFADLKLLHQIETIANP  216 (321)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~--------------~~I~iwd~~~~~~~~~l~~~~~~  216 (321)
                       ......+...+...+.....  .......+.+......+...              .....+..............   
T Consensus       118 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  191 (281)
T d1k32a2         118 -FSSMTCLYRVENDGINFVPL--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---  191 (281)
T ss_dssp             -STTCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---
T ss_pred             -CccceeeeeecCCCceeEEe--cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCc---
Confidence             11123355555554443221  11222223333332222210              11112222222222222211   


Q ss_pred             CceEEEeeCCCceEEEeecCCCC--cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 020784          217 KGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (321)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg--~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i  294 (321)
                      .........++..+..  ...++  .|.++++.++....+..+.. .....|+|||+.||-. .++. |.++|+.+|+.-
T Consensus       192 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~-~~~~-l~~~d~~~g~~~  266 (281)
T d1k32a2         192 THVSSPVIVGHRIYFI--TDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGS-IYIFNPDTEKIE  266 (281)
T ss_dssp             SCCEEEEEETTEEEEE--ECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTE-EEEECTTTCCEE
T ss_pred             cccceeeeecccccee--cccccccceEEEeCCCCceEEeecCCC-cccccCcCCCCEEEEE-eCCE-EEEEECCCCCEE
Confidence            1122222233333333  33334  45557777766665544432 2234689999998854 4777 999999998864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00053  Score=62.21  Aligned_cols=97  Identities=5%  Similarity=-0.067  Sum_probs=66.3

Q ss_pred             EEeeCCCceEEEeec--------CCCCcEEEEeeCCcceEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 020784          221 AVSQGVGSLVLVCPG--------LQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (321)
Q Consensus       221 ~~s~~~d~~~la~sG--------s~dg~V~i~d~~~~~~~~l~~---H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~  289 (321)
                      .+...+|+..+++..        +..|.+.++|+.++....+..   ....+....|||||+.||=.. ++. |.+.+..
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~n-l~~~~~~  142 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENN-IYYCAHV  142 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTE-EEEESSS
T ss_pred             eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cce-EEEEecC
Confidence            333444556555422        345678889998877665532   345577789999999999776 677 8888988


Q ss_pred             CCcEEEEEeCCCcc-------------------eeEEEeecCceEEEee
Q 020784          290 DGTLLQEECCPSIS-------------------AQSGLWLSSAWLRVLR  319 (321)
Q Consensus       290 tg~~i~~~~~g~~~-------------------~~~~~s~d~~~la~~~  319 (321)
                      +++.++....|...                   ..+-+|+||++||.+|
T Consensus       143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            88776655444332                   1234689999999987

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.27  E-value=0.031  Score=45.15  Aligned_cols=218  Identities=8%  Similarity=-0.061  Sum_probs=111.2

Q ss_pred             EEcCC--CCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEE
Q 020784           92 SFNQD--HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (321)
Q Consensus        92 ~fs~d--g~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~  169 (321)
                      ..+||  |+++|-.+++-+-+.|++.++.. .... +.+......|+++++.++.+..... ......|.+++...++..
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~-~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIAIRVMRGS-SLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEEEEEEEST-TCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEEEEEeeCC-CCCceEEEEEEecCCceE
Confidence            35788  99998777766666687776643 2222 3466777899999999998753211 001134777787777654


Q ss_pred             EEEeeC-------CceeEEEEeCCe--EEEEEC-------CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEe
Q 020784          170 GELSFR-------SEVRSVKLRRDR--IIVVLE-------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (321)
Q Consensus       170 ~~~~~~-------~~v~~v~~~~~~--~~~~~~-------~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~  233 (321)
                      ......       .......|+++.  ++....       ..+...+...+..... .  .... ...+..+ ++..++.
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~~~~~~~-~~~~~~~  156 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-N--LGPA-THILFAD-GRRVIGR  156 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-C--SCSC-SEEEEET-TEEEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe-c--CCcc-ceeeecC-CCeEEEe
Confidence            322111       123456677654  333221       1345555554443221 1  1111 1222332 2233332


Q ss_pred             ecCCC----------CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc
Q 020784          234 PGLQK----------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS  303 (321)
Q Consensus       234 sGs~d----------g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~  303 (321)
                      ....+          ....+.............+........++++..+++........|.++|+.+++.. .+..+...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~~  235 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTDY  235 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCSS
T ss_pred             eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceE-EeecCCCc
Confidence            11111          11112222223333334444555666677665444433323334667788777653 34333333


Q ss_pred             eeEEEeecCceEEEe
Q 020784          304 AQSGLWLSSAWLRVL  318 (321)
Q Consensus       304 ~~~~~s~d~~~la~~  318 (321)
                      ....+++||+.|+..
T Consensus       236 ~~~~~SpDG~~I~f~  250 (281)
T d1k32a2         236 YPRHLNTDGRRILFS  250 (281)
T ss_dssp             CEEEEEESSSCEEEE
T ss_pred             ccccCcCCCCEEEEE
Confidence            345789999998764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.16  E-value=0.05  Score=45.36  Aligned_cols=211  Identities=9%  Similarity=0.015  Sum_probs=122.9

Q ss_pred             EEEEEcCC-CCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           89 LHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        89 ~~v~fs~d-g~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      .+..|++. |.++-+--. +.|.-||.++++.. ...+  ...+..+....++++++. +        .+.|.++|..++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~--~~~~~~i~~~~dg~l~va-~--------~~gl~~~d~~tg   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKISDSKQLIA-S--------DDGLFLRDTATG   88 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETTEEEEE-E--------TTEEEEEETTTC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC--CCCcEEEEEecCCCEEEE-E--------eCccEEeecccc
Confidence            35667764 444334333 44667777776543 2333  556777777777665544 3        256999999988


Q ss_pred             cEEEEEeeCC-----ceeEEEEeCCe-EEEEE------CCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEee
Q 020784          167 RCIGELSFRS-----EVRSVKLRRDR-IIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (321)
Q Consensus       167 ~~~~~~~~~~-----~v~~v~~~~~~-~~~~~------~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~s  234 (321)
                      +.........     .+..+.+.++. +.+++      .+.-.+|.+.+++....+..... -.-.++++  ++..+.++
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~-~Ng~~~s~--d~~~l~~~  165 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI-PNSICFSP--DGTTGYFV  165 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS-EEEEEECT--TSCEEEEE
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC-cceeeecC--CCceEEEe
Confidence            7654333221     35566676654 44443      13456677766665444433221 12334444  44444444


Q ss_pred             cCCCCcEEEEeeCCc------ceE---EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCccee
Q 020784          235 GLQKGQVRVEHYASK------RTK---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSISAQ  305 (321)
Q Consensus       235 Gs~dg~V~i~d~~~~------~~~---~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~  305 (321)
                      .+..+.|..+++...      ...   .+.+-.+....+++..+|.+.++.-..+. |..|| .+|+++..+...... .
T Consensus       166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~lP~~~-~  242 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEVPGKQ-T  242 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEECSCSB-E
T ss_pred             ecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecCCCCc-e
Confidence            677778887765321      111   22334556899999999998876655666 99999 679999988764432 2


Q ss_pred             EEEe---ecCceEEE
Q 020784          306 SGLW---LSSAWLRV  317 (321)
Q Consensus       306 ~~~s---~d~~~la~  317 (321)
                      .++.   .|.+-|-|
T Consensus       243 T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         243 TCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEEEESTTSCEEEE
T ss_pred             EEEEEeCCCCCEEEE
Confidence            3333   45555655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.96  E-value=0.083  Score=44.41  Aligned_cols=192  Identities=13%  Similarity=0.008  Sum_probs=102.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--C-cEEEEEecC--CceeEEeeee-cCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEE
Q 020784           86 PTLLHISFNQDHGCFAAGTD--H-GFRIYNCDP--FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (321)
Q Consensus        86 ~~V~~v~fs~dg~~lasg~~--~-gv~vw~~~~--~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~  159 (321)
                      .....++|++||+++++...  + ...++.++.  .......... .......+.+..++++.+.-..+.. .-..+.+.
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~-~~~~g~v~  160 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-TNPLGGVY  160 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-TBCCEEEE
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccccccc-ccCcceeE
Confidence            45778999999998887543  1 233554433  2222111110 1123455677777875544322111 00123455


Q ss_pred             EEeCCCCcEEEEEeeCCceeEEEEeCC--eEEEEE--CCEEEEEEcCC-cEEEE----EEec-cCCCCceEEEeeCCCce
Q 020784          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD-LKLLH----QIET-IANPKGLCAVSQGVGSL  229 (321)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~--~~~I~iwd~~~-~~~~~----~l~~-~~~~~~~~~~s~~~d~~  229 (321)
                      .++...+........-.....++|+++  .++++.  .+.|..|++.. +....    .+.. ......--.+..+.+++
T Consensus       161 ~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~  240 (319)
T d2dg1a1         161 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN  240 (319)
T ss_dssp             EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred             EEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC
Confidence            555544433322222234667899875  466664  36999998753 21111    1111 11111122345556666


Q ss_pred             EEEeecCCCCcEEEEeeCCcceEEee------ccccceeEEEECCCCCEEEEEeCC
Q 020784          230 VLVCPGLQKGQVRVEHYASKRTKFIM------AHDSRIACFALTQDGQLLATSSTK  279 (321)
Q Consensus       230 ~la~sGs~dg~V~i~d~~~~~~~~l~------~H~~~V~~vafspdg~~las~S~D  279 (321)
                      +.++ ...+|.|.+++-..+.+..+.      ++...+++++|.+++..|.+.+.|
T Consensus       241 l~Va-~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         241 LYVA-MYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             EEEE-EETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEEE-EcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence            6653 566788998886555454443      345568999999988766655433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.89  E-value=0.49  Score=41.33  Aligned_cols=225  Identities=16%  Similarity=0.102  Sum_probs=126.4

Q ss_pred             EEEEcC---CCCEEEEEcC-Cc-EEEEEecCCceeEEeeeecCCceEEEEEe--cCCCeEEEEeCCCCCCCCC-------
Q 020784           90 HISFNQ---DHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEML--FRCNILALVGGGPDPQYPL-------  155 (321)
Q Consensus        90 ~v~fs~---dg~~lasg~~-~g-v~vw~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~sg~~~~~~~d-------  155 (321)
                      .++|..   ||+||..... ++ |.+-|+++++.....+.......-.+...  ++..+++..+......-.|       
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            577775   9999988876 33 77899999987543332112333333333  3444544433211000011       


Q ss_pred             ----CcEEEEeCCCCcEEEEEeeCCceeEEEEeCCe--EEEEE---C-------------CEEEEEE-------------
Q 020784          156 ----NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL---E-------------QKIFVYN-------------  200 (321)
Q Consensus       156 ----~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~---~-------------~~I~iwd-------------  200 (321)
                          +.+.++|.++.+....+........+.++++.  +++.+   +             +.+.++|             
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                34678899998888877777666566665542  22222   0             1333443             


Q ss_pred             ----------cCC---cEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCc------------ceEEee
Q 020784          201 ----------FAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK------------RTKFIM  255 (321)
Q Consensus       201 ----------~~~---~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~------------~~~~l~  255 (321)
                                .++   ...++.+.....+.++   ..++|+.+++++|.-+.+|.|.|++.-            .+..-.
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV---~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGC---NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCE---EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCce---EECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                      322   1122233333333332   345567888888999999999987521            111111


Q ss_pred             ccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----------cEEEEEeCCCcceeEE------EeecCceEEEe
Q 020784          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------TLLQEECCPSISAQSG------LWLSSAWLRVL  318 (321)
Q Consensus       256 ~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg----------~~i~~~~~g~~~~~~~------~s~d~~~la~~  318 (321)
                      ...-.....+|+.+|.-..|-=-|.. |--|++...          ..+..+...-+.-.+.      ..+||+||.+.
T Consensus       326 elglgPLht~fd~~g~aytslfids~-v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~  403 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  403 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             ccCcCccccccCCCceEEEEeeccce-EEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence            22334566789988865555556777 889998543          5566665422222222      24899998764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.51  E-value=0.039  Score=51.09  Aligned_cols=80  Identities=14%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCc--ceeEEEeecC-ceE
Q 020784          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSI--SAQSGLWLSS-AWL  315 (321)
Q Consensus       239 g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~--~~~~~~s~d~-~~l  315 (321)
                      |.|.-||..++++.--..+...+..=.++-.|.++..|+.||. +|-+|.+||+.+-+++.+..  ..-+.+..|| ||+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~-l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGY-LKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCe-EEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            3455577766665432333333333233335677777999999 99999999999988876544  4456778899 789


Q ss_pred             EEee
Q 020784          316 RVLR  319 (321)
Q Consensus       316 a~~~  319 (321)
                      |++.
T Consensus       532 av~~  535 (596)
T d1w6sa_         532 AIYY  535 (596)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8864

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.27  E-value=0.056  Score=49.76  Aligned_cols=80  Identities=18%  Similarity=0.122  Sum_probs=53.6

Q ss_pred             CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEeecC-ceE
Q 020784          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLWLSS-AWL  315 (321)
Q Consensus       239 g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s~d~-~~l  315 (321)
                      |.|.-+|..++++.--.....++..=.++-.|.++..|+.||. +|-+|.+||+++-+++.+...  .-+.+..+| ||+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCe-EEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            4455567666665422222233332223345667777999999 999999999999888765543  346778999 789


Q ss_pred             EEee
Q 020784          316 RVLR  319 (321)
Q Consensus       316 a~~~  319 (321)
                      |++.
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.21  E-value=0.072  Score=48.89  Aligned_cols=79  Identities=15%  Similarity=0.165  Sum_probs=52.5

Q ss_pred             cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEeecC-ceEE
Q 020784          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLWLSS-AWLR  316 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s~d~-~~la  316 (321)
                      .+.-+|..++++.--..+..+...=..+-.|.++..|+.||. ++.||.+||+.+-+++.+...  .-+.+..|| ||++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~-l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCe-EEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            455577777665532222222222122335677778999999 999999999999888765543  345777899 6888


Q ss_pred             Eee
Q 020784          317 VLR  319 (321)
Q Consensus       317 ~~~  319 (321)
                      ++.
T Consensus       537 v~~  539 (573)
T d1kb0a2         537 VAV  539 (573)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.99  E-value=1.4  Score=36.74  Aligned_cols=80  Identities=11%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             EEEEEcCCCCEEEEEcC--CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC
Q 020784           89 LHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (321)
Q Consensus        89 ~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~  166 (321)
                      ..+++.+||++++.|+.  +.+.+||..+.................+....++..+++ +|........+.+.+||..+.
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~-GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-GGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE-CCCCCSSSCCCCEEEEETTTT
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeee-ccccccccccceeeeecCCCC
Confidence            35678899999999876  458899988765432222111111123344556665544 443221223467999999887


Q ss_pred             cEE
Q 020784          167 RCI  169 (321)
Q Consensus       167 ~~~  169 (321)
                      +..
T Consensus       158 ~W~  160 (387)
T d1k3ia3         158 TWT  160 (387)
T ss_dssp             EEE
T ss_pred             cee
Confidence            654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.73  E-value=0.1  Score=47.71  Aligned_cols=80  Identities=13%  Similarity=0.159  Sum_probs=53.8

Q ss_pred             CcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEeecC-ceE
Q 020784          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLWLSS-AWL  315 (321)
Q Consensus       239 g~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s~d~-~~l  315 (321)
                      |.+.-+|..++++.--..+......=.+.-.|.++..|+.||. +|-+|.+||+.+-+++.+...  .-+.+.-|| |||
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~-l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCc-EEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            4455577777665532233333332223334667777999999 999999999999988866543  345777899 789


Q ss_pred             EEee
Q 020784          316 RVLR  319 (321)
Q Consensus       316 a~~~  319 (321)
                      +++.
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8863

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.53  E-value=0.079  Score=48.63  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=50.4

Q ss_pred             cEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEeCCCcc--eeEEEeecC-ceEE
Q 020784          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEECCPSIS--AQSGLWLSS-AWLR  316 (321)
Q Consensus       240 ~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~~g~~~--~~~~~s~d~-~~la  316 (321)
                      .+.-+|..++++.--..+..+..+=.++-.|.++..|+.||. +|-+|.+||+.+-+++.+...  .-+.+..|| ||+|
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~-l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~  523 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGY-LKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCe-EEEEECCCCcEEEEEECCCCceecceEEEECCEEEEE
Confidence            344466666554422222222221112224556777999999 999999999999888766553  345777899 7898


Q ss_pred             Eee
Q 020784          317 VLR  319 (321)
Q Consensus       317 ~~~  319 (321)
                      ++.
T Consensus       524 v~~  526 (571)
T d2ad6a1         524 SMY  526 (571)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.69  E-value=2  Score=34.50  Aligned_cols=200  Identities=6%  Similarity=-0.114  Sum_probs=113.0

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCC
Q 020784           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (321)
Q Consensus        87 ~V~~v~fs~dg~~lasg~~--~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~  164 (321)
                      .+..++|...+++|.-...  +.|...+++.......... .-+....+++.+-++.+..+..      ..+.|.+.++.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-~~~~p~~iAvD~~~~~lY~~d~------~~~~I~~~~~d  109 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDS------QLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-ccccccEEEEeccCCeEEEecc------CCCEEEEEecC
Confidence            5778999988776665443  3365666665443322221 1245667777776766766653      24789999987


Q ss_pred             CCcEEEEEeeC-CceeEEEEeCC--eEEEEEC--CE--EEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCC
Q 020784          165 QSRCIGELSFR-SEVRSVKLRRD--RIIVVLE--QK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (321)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~~--~~~~~~~--~~--I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (321)
                      .......+... ..+..+.+++.  .++....  +.  |.--++..... ..+... .-....+++.+..+..|..+-..
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~-~~~~P~glaiD~~~~~lYw~d~~  187 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD-NLGLPNGLTFDAFSSQLCWVDAG  187 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT-TCSCEEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeee-cccccceEEEeecCcEEEEEeCC
Confidence            65543333322 46778888753  3444432  23  44445543322 222211 11222344444333333333455


Q ss_pred             CCcEEEEeeCCcceE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 020784          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEEC  298 (321)
Q Consensus       238 dg~V~i~d~~~~~~~-~l~~H~~~V~~vafspdg~~las~S~Dgt~IrIWd~~tg~~i~~~~  298 (321)
                      .+.|...++...... .+.+- .....|++. ++.+..|-...++ |...|..+|+.++.+.
T Consensus       188 ~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         188 THRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEEC
T ss_pred             CCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEECCCCE-EEEEECCCCccceEEC
Confidence            677887777654443 33332 345788886 4555566555677 8899999999888774

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.50  E-value=4.3  Score=34.10  Aligned_cols=193  Identities=11%  Similarity=0.120  Sum_probs=101.0

Q ss_pred             CCCEEEEEcC-CcEEEEEecCCceeEEeeeecCCceEEEEEec----CCC--eEEEEeCCCCCCCCCCcEEEEeCCC-Cc
Q 020784           96 DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF----RCN--ILALVGGGPDPQYPLNKVMIWDDHQ-SR  167 (321)
Q Consensus        96 dg~~lasg~~-~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~----~~~--~~~~~sg~~~~~~~d~~v~iWD~~~-~~  167 (321)
                      +..++++... .|+.+||++ ++.+....   .+.+.-|....    .++  .+++++...+   ...+|.+|.+.. ..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~---~~~~l~~~~id~~~~  111 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSE---GKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCT---TTCEEEEEEEETTTT
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcC---cceeEEEEEecCccc
Confidence            3444444333 579999985 55544433   46676666542    222  3455553321   124688887752 33


Q ss_pred             EEEEEeeC--------CceeEEEE--eCC---eEEEEEC--CEEEEEEc---CC----cEEEEEEeccCCCCceEEEeeC
Q 020784          168 CIGELSFR--------SEVRSVKL--RRD---RIIVVLE--QKIFVYNF---AD----LKLLHQIETIANPKGLCAVSQG  225 (321)
Q Consensus       168 ~~~~~~~~--------~~v~~v~~--~~~---~~~~~~~--~~I~iwd~---~~----~~~~~~l~~~~~~~~~~~~s~~  225 (321)
                      .+..+...        ..++.+|+  ++.   ..+++++  +.+..|.+   .+    .+++++|..... .--|.+.. 
T Consensus       112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q-~EGCVvDd-  189 (353)
T d1h6la_         112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ-TEGMAADD-  189 (353)
T ss_dssp             EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC-EEEEEEET-
T ss_pred             ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc-cceEEEeC-
Confidence            44433321        25778887  332   2344444  57877766   22    355666665433 22333332 


Q ss_pred             CCceEEEeecCCCCcEEEEeeCC-----cceE-Eee--ccccceeEEEEC--C--CCCEEEEEeCCCcEEEEEEcCC-Cc
Q 020784          226 VGSLVLVCPGLQKGQVRVEHYAS-----KRTK-FIM--AHDSRIACFALT--Q--DGQLLATSSTKGTLVRIFNTLD-GT  292 (321)
Q Consensus       226 ~d~~~la~sGs~dg~V~i~d~~~-----~~~~-~l~--~H~~~V~~vafs--p--dg~~las~S~Dgt~IrIWd~~t-g~  292 (321)
                      ..+.+++  +-.+.-|..++...     ..+. ...  .....+-.|++-  .  +|.+|||.-.|++ ..|||.++ .+
T Consensus       190 e~~~Lyi--sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~-f~vydr~~~~~  266 (353)
T d1h6la_         190 EYGSLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSS-YAIYERQGQNK  266 (353)
T ss_dssp             TTTEEEE--EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTE-EEEEESSTTCC
T ss_pred             CCCcEEE--ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCe-EEEEecCCCcc
Confidence            2334444  44443333233221     1111 111  245678888864  2  3456666655777 99999987 57


Q ss_pred             EEEEEeCC
Q 020784          293 LLQEECCP  300 (321)
Q Consensus       293 ~i~~~~~g  300 (321)
                      .+..|+.+
T Consensus       267 ~~g~F~i~  274 (353)
T d1h6la_         267 YVADFQIT  274 (353)
T ss_dssp             EEEEEEEC
T ss_pred             ccceEEEe
Confidence            77777643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.71  E-value=5.7  Score=34.34  Aligned_cols=132  Identities=8%  Similarity=-0.028  Sum_probs=78.6

Q ss_pred             eEEEEE--CCEEEEEEcCCcEEEEEEeccCC-CCceEEEeeCCCceEEEeecCC------C-----------CcEEEEee
Q 020784          187 RIIVVL--EQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGLQ------K-----------GQVRVEHY  246 (321)
Q Consensus       187 ~~~~~~--~~~I~iwd~~~~~~~~~l~~~~~-~~~~~~~s~~~d~~~la~sGs~------d-----------g~V~i~d~  246 (321)
                      .+++..  +..|-+.|+.+++..+.+..... ...-++....+.-.++++.+..      |           +.+.+.|.
T Consensus       101 ylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~  180 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  180 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET
T ss_pred             EEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEec
Confidence            344543  25999999999998776644211 1122344445555566542221      1           23444666


Q ss_pred             CCcceEEeeccccceeEEEECCCCCEEEEEeCC--------------------------------------CcEEEEEEc
Q 020784          247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTK--------------------------------------GTLVRIFNT  288 (321)
Q Consensus       247 ~~~~~~~l~~H~~~V~~vafspdg~~las~S~D--------------------------------------gt~IrIWd~  288 (321)
                      .+..+..--.-......++++++|+++++.|.+                                      +. +++-|.
T Consensus       181 ~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing-V~VVD~  259 (459)
T d1fwxa2         181 DKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG-VKVVDG  259 (459)
T ss_dssp             TTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT-EEEEEC
T ss_pred             CCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC-ceeecc
Confidence            555433111123457789999999998887754                                      33 455565


Q ss_pred             CC---CcEEEEEeCCCcceeEEEeecCceEEEee
Q 020784          289 LD---GTLLQEECCPSISAQSGLWLSSAWLRVLR  319 (321)
Q Consensus       289 ~t---g~~i~~~~~g~~~~~~~~s~d~~~la~~~  319 (321)
                      ++   ...++.+..+.....+.+++||+|+.++-
T Consensus       260 ~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaG  293 (459)
T d1fwxa2         260 RKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG  293 (459)
T ss_dssp             SGG--CSSEEEEEEESSCCCEEECTTSSEEEEEC
T ss_pred             cccCCcceeEEEecCCCCCceEECCCCCEEEEeC
Confidence            53   23444556666677788999999998864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.42  E-value=0.48  Score=41.21  Aligned_cols=59  Identities=10%  Similarity=0.043  Sum_probs=38.0

Q ss_pred             ceeEEEECCCCCEEEE----EeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          260 RIACFALTQDGQLLAT----SSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       260 ~V~~vafspdg~~las----~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      .+..+++||||+++|-    +|.|...|||+|+.+|+.+...-.......+.++.|++.|...
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEE
Confidence            3455678999998883    3334456999999999987532111112345667788776543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.29  E-value=6.7  Score=32.19  Aligned_cols=112  Identities=13%  Similarity=0.169  Sum_probs=72.1

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEEecCCceeEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCC-cE
Q 020784           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RC  168 (321)
Q Consensus        90 ~v~fs~dg~~lasg~~~gv~vw~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~-~~  168 (321)
                      +.--+|..+.||-=+...+.|||+++...+....+  ...|....|. +.+.+++++        +..|.-|+++.. ..
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~--~e~VvfWkWi-s~~~L~lVT--------~taVYHW~~~g~s~P  135 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM--TDDVTFWKWI-SLNTVALVT--------DNAVYHWSMEGESQP  135 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC--SSCCCEEEES-SSSEEEEEC--------SSEEEEEESSSSCCC
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc--CCCcEEEEec-CCCEEEEEc--------CCceEEEcccCCCCc
Confidence            45567888888866677789999999988777776  5666665664 566788877        478999998532 34


Q ss_pred             EEEEeeCC-----ceeEEEEeCC--eEEEEE----C----CEEEEEEcCCcEEEEEEecc
Q 020784          169 IGELSFRS-----EVRSVKLRRD--RIIVVL----E----QKIFVYNFADLKLLHQIETI  213 (321)
Q Consensus       169 ~~~~~~~~-----~v~~v~~~~~--~~~~~~----~----~~I~iwd~~~~~~~~~l~~~  213 (321)
                      ...++-+.     .|.....+++  .+++.+    +    |.+.+|..+.... +.+++|
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGh  194 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGH  194 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCS
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccce
Confidence            55554332     4555555554  233221    1    5788888865432 344444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.26  E-value=7.7  Score=32.82  Aligned_cols=96  Identities=13%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             ceeEEEEeCCeEEEEECCEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEEEeeCCcceEEee-
Q 020784          177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-  255 (321)
Q Consensus       177 ~v~~v~~~~~~~~~~~~~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~-  255 (321)
                      .|..++|+.+.+++..++.+..++.............  ......+.+.+....++   ..+|.+.++.+.......+. 
T Consensus        88 ~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~p~~~~l~---~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSF--EKPVFQLKNVNNTLVIL---NSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEEC--SSCEEEEEECSSEEEEE---ETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCCEEEEEeCCCEEEEEeeccccccccccc--cccccceecCCceeEEE---ecCCCEEEEEeccCccccccC
Confidence            5888999999999988899999988654333332222  23356666666433333   45677777776654322111 


Q ss_pred             -----ccccceeEEEECCCCCEEEEEe
Q 020784          256 -----AHDSRIACFALTQDGQLLATSS  277 (321)
Q Consensus       256 -----~H~~~V~~vafspdg~~las~S  277 (321)
                           --.+.+.+++|++.|..++++.
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeC
Confidence                 1235688888888888887764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.03  E-value=6  Score=31.38  Aligned_cols=210  Identities=5%  Similarity=-0.123  Sum_probs=106.3

Q ss_pred             CCEEEEEcCCcEEEEEecCCce-----eEEeeeecCCceEEEEEecCCCeEEEEeCCCCCCCCCCcEEEEeCCCCcEEEE
Q 020784           97 HGCFAAGTDHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (321)
Q Consensus        97 g~~lasg~~~gv~vw~~~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~~~~sg~~~~~~~d~~v~iWD~~~~~~~~~  171 (321)
                      |.+|.-+..+.|+-.+++....     ...... +...+..+++....+.+..+..      ..+.|+..++..+.....
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~-~~~~~~~ld~D~~~~~iywsd~------~~~~I~~~~l~g~~~~~v   73 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTI   73 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEE
T ss_pred             CCEEEEeCCCeEEEEECCCcccccccccccccc-CCCcEEEEEEEeCCCEEEEEEC------CCCeEEEEEcccCCcEEE
Confidence            4566666666666666543321     111111 1223445666666777766543      357788888875543333


Q ss_pred             EeeC-CceeEEEEe--CCeEEEEEC--CEEEEEEcCCcEEEEEEeccCCCCceEEEeeCCCceEEEeecCCCCcEEE--E
Q 020784          172 LSFR-SEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--E  244 (321)
Q Consensus       172 ~~~~-~~v~~v~~~--~~~~~~~~~--~~I~iwd~~~~~~~~~l~~~~~~~~~~~~s~~~d~~~la~sGs~dg~V~i--~  244 (321)
                      +... ..+.++++.  .+.++.+..  +.|.+.++..... ..+.... ......+..++...++..+-...+..+|  -
T Consensus        74 ~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~-l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~  151 (263)
T d1npea_          74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (263)
T ss_dssp             ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEeccc-ccCCcEEEEecccCcEEEeecCCCCcEEEEe
Confidence            3222 356666664  667777643  5999999875443 2232211 1122333333333333322222223334  3


Q ss_pred             eeCCcceEEe-eccccceeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEeCCCcceeEEEeecCceEEEe
Q 020784          245 HYASKRTKFI-MAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEECCPSISAQSGLWLSSAWLRVL  318 (321)
Q Consensus       245 d~~~~~~~~l-~~H~~~V~~vafspdg~~l-as~S~Dgt~IrIWd~~tg~~i~~~~~g~~~~~~~~s~d~~~la~~  318 (321)
                      ++.......+ ...-...+.|++.+.+..| .+-+..++ |...|+..+.+ +++-.+.. .-..++.++.+|-++
T Consensus       152 ~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~-~~v~~~~~-~P~~lav~~~~lYwt  224 (263)
T d1npea_         152 HMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGR-RKVLEGLQ-YPFAVTSYGKNLYYT  224 (263)
T ss_dssp             ETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEE-EEEEECCC-SEEEEEEETTEEEEE
T ss_pred             cCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCe-EEEECCCC-CcEEEEEECCEEEEE
Confidence            3433333333 2334567899999776655 54455667 88888875544 33323322 122444456665443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.10  E-value=3.5  Score=35.30  Aligned_cols=97  Identities=7%  Similarity=-0.029  Sum_probs=55.5

Q ss_pred             EeeCCCceEEEeecCC----CCcEEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEeCCC---------------cE
Q 020784          222 VSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---------------TL  282 (321)
Q Consensus       222 ~s~~~d~~~la~sGs~----dg~V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S~Dg---------------t~  282 (321)
                      ++..+|+.++|++-+.    .-.+++.|+.++......-.......++|.+|++.|.-...|.               ..
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  209 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence            3445666777765333    3367789998887543222222336789999999776443321               12


Q ss_pred             EEEEEcCCCcE--EEEEeCCCcc---eeEEEeecCceEEEe
Q 020784          283 VRIFNTLDGTL--LQEECCPSIS---AQSGLWLSSAWLRVL  318 (321)
Q Consensus       283 IrIWd~~tg~~--i~~~~~g~~~---~~~~~s~d~~~la~~  318 (321)
                      |..+.+.+...  +.-+......   .....+.|++||.+.
T Consensus       210 v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             EEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence            77777777531  1222222221   233567888887653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.39  E-value=8.8  Score=31.73  Aligned_cols=50  Identities=8%  Similarity=0.177  Sum_probs=32.4

Q ss_pred             EEEEeeCCcceEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEEEcCCC
Q 020784          241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDG  291 (321)
Q Consensus       241 V~i~d~~~~~~~~l~~H~~~V~~vafspdg~~las~S-~Dgt~IrIWd~~tg  291 (321)
                      ..++.+..+........-...+.|+++||+++|..+. ..++ |++|++...
T Consensus       188 g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~  238 (340)
T d1v04a_         188 SFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHAN  238 (340)
T ss_dssp             EEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTT
T ss_pred             eeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCC
Confidence            3444444444444444445689999999998765554 4555 999998743

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=82.13  E-value=4.3  Score=33.48  Aligned_cols=69  Identities=12%  Similarity=0.035  Sum_probs=44.6

Q ss_pred             eeCCCceEEEeecCCCCcEEEEeeCCcceEEeec--cccceeEEEECCCCCEEEEEeCC------CcEEEEEEcCCCc
Q 020784          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTK------GTLVRIFNTLDGT  292 (321)
Q Consensus       223 s~~~d~~~la~sGs~dg~V~i~d~~~~~~~~l~~--H~~~V~~vafspdg~~las~S~D------gt~IrIWd~~tg~  292 (321)
                      ...+++.+++.-|.....+.+||..+..-..+..  ..+.-.+++..+||++++.|+.+      .. +.+||..+.+
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~-v~~yd~~~~~  158 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKN-GEVYSPSSKT  158 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCC-EEEEETTTTE
T ss_pred             EEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccce-eeeecCCCCc
Confidence            3455668887533344588899987655332221  12233567778899999998753      35 8899988765