Citrus Sinensis ID: 020786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccHHHHccccHHHHHHHHcccccccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHHccHHHHHHHHHccccHHHHHHHHHHcHHHHHHcHHHccHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHcHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHccHEEEccHHHHccHHHHHHHHHHHcccccccccHHHHEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mlnkehrvlesdaYATVEFfrtngfsdsqiksitvkrpkfyvynlkkcmkpkleffKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIekvlepniaILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVkklgfdptnLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVnklsmepliiskhpYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEhkvpkvvkahqgkikfQGFLK
Flexible Loop (DISEMBL)
mlnkehrvlesdayaTVEFfrtngfsdsqiksitvkrpKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEvkklgfdptNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKvpkvvkahqgkikfqgflk
Low Complexity Region (SEG)
MLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Disordered region (IsUnstruct)
***********DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKF*****
Disordered Region (DISOPRED)
*****H*VLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFL*
Disordered Region (DISEMBL)
MLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Disordered Region (DISPRO)
*LN***RVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
255540295	423	conserved hypothetical protein [Ricinus	0.878	0.666	0.526	6e-90
224131208	400	predicted protein [Populus trichocarpa]	0.947	0.76	0.383	3e-58
225432342	384	PREDICTED: uncharacterized protein LOC10	0.934	0.781	0.383	5e-58
255593266	377	conserved hypothetical protein [Ricinus	0.912	0.777	0.394	6e-58
147817762	379	hypothetical protein VITISV_028995 [Viti	0.940	0.796	0.363	5e-57
255559286	377	conserved hypothetical protein [Ricinus	0.950	0.809	0.375	8e-57
147853204	384	hypothetical protein VITISV_003242 [Viti	0.934	0.781	0.38	9e-57
225432336	389	PREDICTED: uncharacterized protein LOC10	0.934	0.771	0.383	2e-56
255559288	406	conserved hypothetical protein [Ricinus	0.937	0.741	0.377	2e-56
18415647	405	Mitochondrial transcription termination	0.934	0.740	0.375	6e-56

>gi|255540295|ref|XP_002511212.1| conserved hypothetical protein [Ricinus communis] gi|223550327|gb|EEF51814.1| conserved hypothetical protein [Ricinus communis]

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 168/319 (52%), Positives = 225/319 (70%), Gaps = 37/319 (11%)

Query: 1   MLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLG 60
           ML+KE RVL+ DA   VEFFR NGFSD QI  +T+KRP  Y+    K  KPKLEFFKSLG
Sbjct: 136 MLSKEPRVLDVDAKTVVEFFRENGFSDKQITILTMKRPILYLCRAHKNFKPKLEFFKSLG 195

Query: 61  FAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKV 120
           F+EL +A+ LS++PYILERSLEN I+PC+++LRRV+  D NVLK I+A   +LE +++K+
Sbjct: 196 FSELDIAQILSAEPYILERSLENTIMPCVQVLRRVVGDDSNVLKVIKASYRILEVNVKKM 255

Query: 121 LEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIR 180
           LEPN+ +L NHGVP+S                               FD      + A+R
Sbjct: 256 LEPNMLLLANHGVPES-------------------------------FD------IEAVR 278

Query: 181 SMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEP 240
           SM++ +KALW++KLEAY +FGL+ DE++ AF+ QPM M+ SE+KI KLMD +VNKL++ P
Sbjct: 279 SMSMTNKALWDRKLEAYRSFGLSNDEIHLAFKLQPMCMLSSEKKIRKLMDFFVNKLNISP 338

Query: 241 LIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYE 300
            +ISK+P L+L SLEKRILPRCSVL +LMS ++I E F L YM +MTEK F + +V KY+
Sbjct: 339 SVISKNPNLMLLSLEKRILPRCSVLNILMSKELINEGFKLIYMLRMTEKMFGKNVVTKYQ 398

Query: 301 HKVPKVVKAHQGKIKFQGF 319
             VP++V+AHQG+++FQGF
Sbjct: 399 DLVPEIVEAHQGRVEFQGF 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131208|ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|222861800|gb|EEE99342.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 188/305 (61%), Gaps = 1/305 (0%)

Query: 15  ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
           + +   R +GFS +QI S+  KRP   + N    + PKL+FF SLG +   +A+ LSS P
Sbjct: 95  SVLALLRNHGFSRTQISSLVKKRPFLLLSNPTNTLLPKLDFFLSLGMSRPHLARTLSSDP 154

Query: 75  YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 134
            +L RSLEN I+P    L+ +L +DE ++ A +    +   D+ K L PN+ +L   GVP
Sbjct: 155 TLLTRSLENQIVPSYNFLKTILRSDEKIVSAFKRTTWIFLEDLSKNLIPNLELLRKVGVP 214

Query: 135 KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSM-AVMSKALWEKK 193
           +S +  L+   P  ++++    ++ ++EV+K+GFDP    FVLA+ ++    +K++WE+ 
Sbjct: 215 QSCISLLLTHFPEAMMENHEEFSENVEEVRKMGFDPNKSTFVLAVHALCGKCNKSIWERC 274

Query: 194 LEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFS 253
            E Y  +G TKD++ SAFR+ P  M++SE+KI K +D +VNK+      I   P +L  S
Sbjct: 275 FEVYKRWGWTKDDILSAFRKHPHCMMLSEKKIMKGLDFFVNKMGWPSKEIVHCPVILFLS 334

Query: 254 LEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGK 313
           LEKRI+PRC V+Q+L S  +I +D SL  +    EK+F+ER V K+E +VP+++  ++GK
Sbjct: 335 LEKRIIPRCKVIQVLWSKGLIKKDISLNTVLLPVEKRFLERFVTKFEEEVPQLLSVYEGK 394

Query: 314 IKFQG 318
           +  +G
Sbjct: 395 VDPEG 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432342|ref|XP_002276393.1| PREDICTED: uncharacterized protein LOC100240766 [Vitis vinifera]

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 182/300 (60%)

Query: 19  FFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILE 78
           FF ++GFS+SQ   I   +P+  V +  K + PKL FF S G +   + K ++S P IL+
Sbjct: 85  FFNSHGFSESQTSKIVRSQPQLLVSDPDKSLLPKLHFFYSKGASNPDVVKIIASCPVILK 144

Query: 79  RSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLV 138
           RSLEN IIP     +    ++E  +  ++    VL  +    +E NI  L   GVPKS +
Sbjct: 145 RSLENQIIPSFNFFKDFFQSEEVTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNI 204

Query: 139 VKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM 198
             L+ +QPR  +       +I++EVKK+GFDP+   F  A+++M  MSK+ WE+K++AY 
Sbjct: 205 AALLSLQPRAFMVRPNHFREILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYK 264

Query: 199 NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRI 258
            +G ++++++ AF + P  MI SE KI   MD +VNK+  E  +I+  P+L+  SLEKRI
Sbjct: 265 RWGWSEEDIWLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRI 324

Query: 259 LPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQG 318
           +PR SV+Q+L+S  +I +D SL  +F+ TEK F+E+ V  Y+ + P+++  +Q K+   G
Sbjct: 325 IPRYSVVQVLLSKGLIDKDISLVVLFESTEKMFLEKFVNGYKEEAPQLLNLYQEKVNLSG 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255593266|ref|XP_002535825.1| conserved hypothetical protein [Ricinus communis] gi|223521814|gb|EEF26558.1| conserved hypothetical protein [Ricinus communis]

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 116/294 (39%), Positives = 189/294 (64%), Gaps = 1/294 (0%)

Query: 17  VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYI 76
           ++  R +GF+ SQI S+  K P   + + +K +KPK++F  SLG A+  + K L +   I
Sbjct: 78  LQLLRAHGFTKSQITSLISKHPSIILADSEKTLKPKIQFLDSLGVAKPDIPKILCTDAQI 137

Query: 77  LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKS 136
           L  SL+N I+P I+ LR +L+TDE V+ A++     L +  + ++  N+  L  HGVP+ 
Sbjct: 138 LVSSLKNRILPTIDYLRGILETDEKVVWALKRCPRALRHGTDTMVS-NVGTLRAHGVPEP 196

Query: 137 LVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEA 196
            +  L +++P TLL      N+++ EVK++GF+P N  F+ A+RSM+VMS++ W++K E 
Sbjct: 197 NIRSLFILEPLTLLLRVDLFNQVVQEVKEMGFEPANKSFIYALRSMSVMSRSHWQRKKEV 256

Query: 197 YMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEK 256
            M+FG ++ E   AF+ QP FM+ SE+K+  LM+ ++ KLS+EP  I K P L L SLEK
Sbjct: 257 LMSFGWSESEFLLAFKLQPFFMLTSEKKMKVLMEFFLTKLSLEPSDIVKCPNLFLVSLEK 316

Query: 257 RILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAH 310
           RI+PRC+ L+LLMS  +I ++ S  +   M++KQF +R +  ++   P+++KA+
Sbjct: 317 RIIPRCTALELLMSKGLIDKNVSFIWELNMSKKQFEKRFITCFKQDSPELIKAY 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817762|emb|CAN68940.1| hypothetical protein VITISV_028995 [Vitis vinifera]

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 188/303 (62%), Gaps = 1/303 (0%)

Query: 12  DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLS 71
            A + +   R  G +++ I  I  K P  +  + +K + PKLEFF+S+GF+   +A  LS
Sbjct: 60  GADSVLALLRNYGCTNTHIXKIVSKYPALFTTDPEKTLLPKLEFFRSVGFSGPDIAGILS 119

Query: 72  SQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNH 131
           S PYIL+R L+N++IP    L+ V+  +ENV++ +R    +    ++K + PNIAIL   
Sbjct: 120 SNPYILKRGLQNNLIPTYTFLKSVVMVNENVVRVLRKTHWITVQSVQKAITPNIAILTEI 179

Query: 132 GVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWE 191
           GVP S ++ L+   P  ++Q+  + +  + +V ++GFDP  + F+ A++ +  M +++WE
Sbjct: 180 GVPMSNILFLVTCHPNAVIQNREKFSTSVKKVXEMGFDPLKVSFLKAVQVICGMGESIWE 239

Query: 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLL 251
           +++E Y  +GLT DE+ S FR  P+ M  SE+KI  +MD  VNK+  EP  I+++P + +
Sbjct: 240 QRMEVYKRWGLTDDEIMSMFRLDPLCMRSSEKKIMSVMDFLVNKMGWEPATIARYPTVFM 299

Query: 252 FSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQ 311
            SLEK+I+PRCSV+++L    ++ +D  L  +   +E  F ++ V KYE +VP+++  +Q
Sbjct: 300 RSLEKKIIPRCSVVKVLQMKGLVKKDLCLG-ILGCSENNFFDKFVLKYEQEVPELLNVYQ 358

Query: 312 GKI 314
           GKI
Sbjct: 359 GKI 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559286|ref|XP_002520663.1| conserved hypothetical protein [Ricinus communis] gi|223540048|gb|EEF41625.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 188/306 (61%), Gaps = 1/306 (0%)

Query: 13  AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS 72
           A   +   +  GF+ +QI S+  KRP   + +    + PKLEFF S+G +   +A+ LSS
Sbjct: 69  ADTVLALLKDRGFTKTQISSLVKKRPSLLLAHAHNTLLPKLEFFYSIGVSSSDLARTLSS 128

Query: 73  QPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHG 132
            P +L RS+EN I+P    L+ +L ++E ++ A++    +   D  K L PN+  L   G
Sbjct: 129 DPTLLTRSIENQIVPSYNFLKSILLSNEKIVSALKRTTWIFLEDYSKNLMPNVERLREIG 188

Query: 133 VPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMS-KALWE 191
           V  S +  L+   P  +LQ     NK++ EVK++GFDP   +FV+A+ +++  S KA+W 
Sbjct: 189 VTHSCISLLLTNFPEAVLQRHGEFNKVVKEVKEMGFDPKKSIFVMAVHAISGKSNKAIWN 248

Query: 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLL 251
           K  E Y  +  +KD++++AF++ P  M++SE+KI   MD +VNK+ +   +I++ P LL 
Sbjct: 249 KCFEVYKRWDWSKDDIFAAFKKHPHCMMLSEKKIMLAMDFFVNKMGLPSKVIAQCPVLLF 308

Query: 252 FSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQ 311
           FSLEKRI+PRC V+++LM+  ++ +D SL  +   TEK F++R V KYE +VP +++ ++
Sbjct: 309 FSLEKRIVPRCRVIRVLMNKGLVKKDVSLATVLVPTEKCFLDRFVIKYEEEVPLLLRVYE 368

Query: 312 GKIKFQ 317
           GKI  Q
Sbjct: 369 GKIDVQ 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853204|emb|CAN78550.1| hypothetical protein VITISV_003242 [Vitis vinifera]

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 181/300 (60%)

Query: 19  FFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILE 78
           FF ++GFS+SQ   I   +P+  V +  K +  KL FF S G +   + K ++S P IL+
Sbjct: 85  FFNSHGFSESQTSKIVRSQPQLLVSDPDKSLLLKLHFFYSKGASNPDVVKIIASCPVILK 144

Query: 79  RSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLV 138
           RSLEN IIP     +    ++E  +  ++    VL  +    +E NI  L   GVPKS +
Sbjct: 145 RSLENQIIPSFNFFKDFFQSEEMTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNI 204

Query: 139 VKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM 198
             L+ +QPR  +       +I++EVKK+GFDP+   F  A+++M  MSK+ WE+K++AY 
Sbjct: 205 AALLSLQPRAFMVRPNHFREILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYK 264

Query: 199 NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRI 258
            +G ++++++ AF + P  MI SE KI   MD +VNK+  E  +I+  P+L+  SLEKRI
Sbjct: 265 RWGWSEEDIWLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRI 324

Query: 259 LPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQG 318
           +PR SV+Q+L+S  +I +D SL  +F+ TEK F+E+ V  Y+ + P+++  +Q K+   G
Sbjct: 325 IPRYSVVQVLLSKGLIDKDISLVVLFESTEKMFLEKFVNGYKEEAPQLLNLYQEKVNLSG 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432336|ref|XP_002274817.1| PREDICTED: uncharacterized protein LOC100257952 [Vitis vinifera]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 184/300 (61%)

Query: 15  ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
           + + FF ++GFS SQ   I    P+    +  K + PKL+FF S G ++  +AK + S P
Sbjct: 88  SVLAFFNSHGFSKSQTSKIVKSLPRLLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTP 147

Query: 75  YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 134
            IL+RSLEN IIP    L+  L +DE  +  ++    +L +D+   +  N+  L   GVP
Sbjct: 148 GILKRSLENQIIPSFNFLKDFLQSDEMAITVVKRFSRILLFDLHTYVASNMNALQEFGVP 207

Query: 135 KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKL 194
           KS +  L++ +P   + +     K ++EVKK+GF+P+ + FVLAI++M    ++ WE+K+
Sbjct: 208 KSNIAGLLMYRPMAFMVNPNLFRKNLEEVKKMGFNPSQMKFVLAIQAMRAGGESCWERKI 267

Query: 195 EAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSL 254
           + Y  +G +++E+  AF + P  MI SE KI   MD +VNK+  E  +I+  P+L+  SL
Sbjct: 268 DIYKKWGWSEEEIRLAFTKSPWCMIYSEDKIMAKMDFFVNKMGRESSLIAHRPFLIGLSL 327

Query: 255 EKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKI 314
           EKRI+PR SV+Q+L+S  +I +D SL  +F+ TEK F+ER V  Y+ + P+++K +Q KI
Sbjct: 328 EKRIIPRYSVVQVLLSKGLINKDISLVVLFESTEKTFLERFVNAYKEEAPQLIKLYQEKI 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559288|ref|XP_002520664.1| conserved hypothetical protein [Ricinus communis] gi|223540049|gb|EEF41626.1| conserved hypothetical protein [Ricinus communis]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 189/302 (62%), Gaps = 1/302 (0%)

Query: 13  AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS 72
           A A +   R  GFS +QI S+  KRP   + + +  + PKLEFF S+G +   +A+ LSS
Sbjct: 94  ADAVLALLRDRGFSKTQISSLVKKRPFLLLAHPQNTLLPKLEFFYSIGASNSALARALSS 153

Query: 73  QPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHG 132
            P +L RSLEN IIP    L+ +L +DE ++ A++    +   D  K L PNI +L   G
Sbjct: 154 DPTLLTRSLENQIIPSYNFLKSILLSDEKIVSALKRTTWIFLEDHSKNLIPNIELLREAG 213

Query: 133 VPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAV-MSKALWE 191
           V  S +  L+   P  L+Q   + +KI+ EV+++ FDP    FVLA+ +++   +K++W 
Sbjct: 214 VLHSCISLLLTHFPEALMQRHDKFSKIVKEVREMEFDPKKSTFVLAVHAISGKGNKSIWN 273

Query: 192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLL 251
           K  E YM +G +KD++++AF++ P  M++SE+KI K MD +VNK+     +I++ P +L 
Sbjct: 274 KCFEVYMRWGWSKDDIFAAFKKHPHCMMLSEKKIMKAMDFFVNKMGFPSKVIAQCPVVLF 333

Query: 252 FSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQ 311
           FSLEKRI+PRC V+++LM+ +++ ED SL  +    E+ F++R V ++  ++P+++  ++
Sbjct: 334 FSLEKRIVPRCRVIRVLMNKRLVKEDVSLASVLLPVEQCFLDRFVTRFAEEIPRLLSVYE 393

Query: 312 GK 313
           GK
Sbjct: 394 GK 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415647|ref|NP_568185.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1| putative protein [Arabidopsis thaliana] gi|10176724|dbj|BAB09954.1| unnamed protein product [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1| unknown protein [Arabidopsis thaliana] gi|21592327|gb|AAM64278.1| unknown [Arabidopsis thaliana] gi|332003836|gb|AED91219.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 188/301 (62%), Gaps = 1/301 (0%)

Query: 17  VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYI 76
           +   R +GF+ +QI S+  KRP   + N +  + PKL FF S+G ++  +A+ L+S P I
Sbjct: 105 LNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTI 164

Query: 77  LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKS 136
           L RSL N +IP    L+ VLD+DE ++ A+R    V   D  K L PNI  +   GVP+ 
Sbjct: 165 LTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEK 224

Query: 137 LVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAV-MSKALWEKKLE 195
            +  L+   P  ++Q       I  + +++GF+P    FVLAI +++   +K++W+K  E
Sbjct: 225 CIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFE 284

Query: 196 AYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLE 255
            Y  +G ++D++  AF++ P  M++SE+KI++ M+ +VN+++M P  I++ P +L FSLE
Sbjct: 285 VYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLE 344

Query: 256 KRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIK 315
           KRI+PRCSV ++L+SN ++ ED+SLT +    EK F+E++V KYE ++P+++  + G  K
Sbjct: 345 KRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLGCTK 404

Query: 316 F 316
            
Sbjct: 405 L 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.928	0.735	0.382	7.8e-55
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.915	0.753	0.298	7e-38
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.897	0.736	0.304	2.1e-36
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.894	0.621	0.256	7.9e-19
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.738	0.526	0.259	4.7e-18
TAIR|locus:2207265	399	AT1G79220 [Arabidopsis thalian	0.850	0.684	0.225	6.6e-17
TAIR|locus:2018057	437	AT1G62120 "AT1G62120" [Arabido	0.741	0.544	0.232	3.3e-16
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.757	0.531	0.256	3.7e-16
TAIR|locus:2036878	414	AT1G61990 "AT1G61990" [Arabido	0.713	0.553	0.261	6.9e-16
TAIR|locus:2036843	457	AT1G61960 "AT1G61960" [Arabido	0.713	0.501	0.261	2.3e-15

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 115/301 (38%), Positives = 190/301 (63%)

Query:    17 VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYI 76
             +   R +GF+ +QI S+  KRP   + N +  + PKL FF S+G ++  +A+ L+S P I
Sbjct:   105 LNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTI 164

Query:    77 LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKS 136
             L RSL N +IP    L+ VLD+DE ++ A+R    V   D  K L PNI  +   GVP+ 
Sbjct:   165 LTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEK 224

Query:   137 LVVKLMLIQ-PRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVM-SKALWEKKL 194
              + KL+L   P  ++Q       I  + +++GF+P    FVLAI +++   +K++W+K  
Sbjct:   225 CI-KLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCF 283

Query:   195 EAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSL 254
             E Y  +G ++D++  AF++ P  M++SE+KI++ M+ +VN+++M P  I++ P +L FSL
Sbjct:   284 EVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSL 343

Query:   255 EKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKI 314
             EKRI+PRCSV ++L+SN ++ ED+SLT +    EK F+E++V KYE ++P+++  + G  
Sbjct:   344 EKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLGCT 403

Query:   315 K 315
             K
Sbjct:   404 K 404

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 88/295 (29%), Positives = 159/295 (53%)

Query:    15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
             + +  F+ +GF++ QI S+    P+    + +  + PKL FF S+GF+    AK +SS P
Sbjct:    90 SVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSP 149

Query:    75 YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 134
              +L  SL   +IPC + L+ +L  +E+V+K ++ G       I   +   ++I    GVP
Sbjct:   150 KMLSYSLHKRLIPCYDSLKSILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVP 209

Query:   135 KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKL 194
                +  L+   P T      R N++++ V   GFDP    FV A+ +    S++  E+K 
Sbjct:   210 DKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKF 269

Query:   195 EAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSL 254
             + +  FG +K++  +A  R P  + VS++KI   ++  VN + ++   I   P +L  S+
Sbjct:   270 KLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSM 329

Query:   255 EKRILPRCSVLQLLMSNKVIT-EDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVK 308
             EKRI PR  V+ LL+S  ++  ED +   + K+   +F+++ V KY+ ++P++V+
Sbjct:   330 EKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQ 384

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 90/296 (30%), Positives = 165/296 (55%)

Query:    15 ATVEFFRTNGFSDSQI-KSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQ 73
             + ++  ++  FSD+QI KSI V  P+   YN++K ++PKL FFK +GF    + KF+S  
Sbjct:    73 SVIQMLKSYSFSDTQIQKSIRV-HPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQN 131

Query:    74 PYILERSLENHIIPCIEILRRVLDTDENVLKAI--RAGCLVLEYDIEKVLEPNIAILVNH 131
               ++  SL   +IP +EIL+ ++      L  I  R G L+L  D    L PNI+ L   
Sbjct:   132 SSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETC 191

Query:   132 GVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWE 191
             G+  S +  L+  QPR    S  +L   +     LGF   + + V A+ S++ +S+  ++
Sbjct:   192 GIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFD 251

Query:   192 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLL 251
             +K++ +M  G ++DE+    RR P  +  SE K++   + Y+ ++ +E   ++K P +L 
Sbjct:   252 RKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLS 311

Query:   252 FSLEKRILPRCSVLQLLMSNKVITEDF----SLTYMFKMTEKQFIERIVKKYEHKV 303
             ++LEKR++PR  VLQ+L    ++ ++     ++  + +MTE+ F+E+ V ++  ++
Sbjct:   312 YNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEI 367

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 7.9e-19, P = 7.9e-19
 Identities = 77/300 (25%), Positives = 152/300 (50%)

Query:    17 VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYI 76
             +  FR+ GF++SQI SI    P+  + + +K +  KL+F +S G +  ++ + +S+ P I
Sbjct:    88 LSLFRSYGFTNSQISSIITDYPRLLLIDAEKSLDIKLQFLESRGASSPELTQIVSTVPKI 147

Query:    77 LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVL-EYDIEKVLEPNIAILVNHGVPK 135
             L       +    + ++ +++ D++        C  L E + +     N+++L + GVP+
Sbjct:   148 LGMKEGKSLGRYYDFVKEIIEADKS--SKYETLCQPLPEANRQGNKIRNVSVLRDLGVPQ 205

Query:   136 SLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLE 195
              L+  L++   + +        + + +V ++GFDPT   FV A+R++   +    E+++ 
Sbjct:   206 KLLFSLLISDAQPVC-GKENFEESLKKVVEMGFDPTTSKFVQALRAVYRFTDKTIEERVN 264

Query:   196 AYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIIS---KHPYLLLF 252
              Y  FG   ++V++ F++ P F+  SE+KI + ++       +E  +IS   K+P  +  
Sbjct:   265 VYKGFGFAVEDVWAMFKKCPYFLNSSEKKIGQTIETLKKCGLLEDEVISVLKKYPQCIGT 324

Query:   253 SLEKRILPRCSV-LQLLMS-NKVIT--EDFSLTYMFKM-TEKQFIERIVKKYEHKVPKVV 307
             S E++IL    + L L  S ++ IT  + F    +    T K+ IE +VKK    +  VV
Sbjct:   325 S-EQKILNSIEIFLGLGFSRDEFITMVKRFPQCLILSAETVKKKIEFVVKKMNWPLKDVV 383

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 64/247 (25%), Positives = 126/247 (51%)

Query:    15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
             + +   R+NGF DSQI  I    P+  V + +K ++PKL+F KS G +  ++ + +S+ P
Sbjct:    86 SVLNLLRSNGFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVP 145

Query:    75 YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 134
              IL++  E  +    + ++ ++   +++       C+      +     NI++L   GVP
Sbjct:   146 TILDKKGEESVSLYYDFVKDIMQDGKSL-------CISCPEGKKGNRIRNISVLRELGVP 198

Query:   135 KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKL 194
             + L+  L++ + + +     +  + + +V  +GFDP    FV A+  +  MS+   E+K+
Sbjct:   199 QKLLFSLLISRYQPVC-GKEKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKV 257

Query:   195 EAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIIS--KHPYLLLF 252
               Y   G ++ E+++ F++ P F+  SE+KI  + +       +E  IIS  K     + 
Sbjct:   258 NVYKRLGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCIR 317

Query:   253 SLEKRIL 259
             S E++IL
Sbjct:   318 SSEQKIL 324

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207265 AT1G79220 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 6.6e-17, P = 6.6e-17
 Identities = 63/279 (22%), Positives = 133/279 (47%)

Query:    17 VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYI 76
             ++  R  G  D +I  +  +RP     N+ + ++ KL   K LG     + K L+ +P  
Sbjct:    84 LQVLRRWGCDDDEISKLFTRRPALQRANVAQ-LEFKLSLLKPLGITSSDLVKILNCRPRF 142

Query:    77 LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKS 136
                 L   +   I     +L + E + + I     ++ YD++  ++P I      G  + 
Sbjct:   143 FSCRLV--LDERINYFMEILGSKEVLRRVIIRNPSLMLYDLDDKIKPAIEYYKGLGFSQQ 200

Query:   137 LVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEA 196
              +V +++ +P TL+  T   N+  + ++K G    + +F      + V      E+K+  
Sbjct:   201 DLVAMLISRP-TLIPRTNFNNEKFEYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRN 259

Query:   197 YMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEK 256
                FG +++E++  + + P+ + +S +K+ + M   +  + +    + KHP LLL +LE 
Sbjct:   260 LEKFGFSEEEIWHLYGKCPILLSLSVEKVQRNMTFVIASMKLPAHSVVKHPCLLLLNLES 319

Query:   257 RILPRCSVLQ--LLMSNKVITEDFSLTYMFKMTEKQFIE 293
             R+ PR  +++  L M  K + ++ S+    +M+EK+F++
Sbjct:   320 RLKPRADLVKRVLEMRLKPLIKEVSIFRAVRMSEKRFLK 358

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018057 AT1G62120 "AT1G62120" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 57/245 (23%), Positives = 124/245 (50%)

Query:    15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
             + +   R++GF+DSQI +I    P+  + + +K + PKL+F +S+G +  ++ + +S+ P
Sbjct:    90 SVLSLLRSHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASSSELTETVSAVP 149

Query:    75 YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVL-EYDIEKVLEPNIAILVNHGV 133
              IL +     +    + ++ +++ D++    +   C  L E   ++    N+ +L   GV
Sbjct:   150 KILGKRKGKSLSRYYDFVKVIIEADKS--SKLEKLCHSLPEGSKQENKIRNLLVLREMGV 207

Query:   134 PKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKK 193
             P+ L+  L++     +     +  + + +  ++GFDPT   FV A+  +  +S    E K
Sbjct:   208 PQRLLFSLLISDAGDVC-GKEKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENK 266

Query:   194 LEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK-LSMEP--LIISKHPYLL 250
               A    GL  D+V++ F++ P  +  SE+KI   ++ ++    S +   +++ + P  +
Sbjct:   267 FNACKRLGLAVDDVWAMFKKWPNILTKSEKKIENSVETFLGLGFSRDEFLMMVKRFPQCI 326

Query:   251 LFSLE 255
              +S E
Sbjct:   327 GYSTE 331

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 66/257 (25%), Positives = 129/257 (50%)

Query:    15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
             + ++  R+ GF DSQI SI    P+F + N +K ++ KL F K  G +  ++ + +S  P
Sbjct:    89 SVLKLLRSYGFKDSQISSIISTYPRFLIENPEKTLRAKLHFLKLNGASSSELTEIVSKVP 148

Query:    75 YILERSLENHIIPCIEILRRVL-DTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGV 133
              IL +     I    + ++ +L D D +   + R          +     N+++L   GV
Sbjct:   149 KILGKRGGKWISHYYDYVKEILQDQDSSSSSSKRK---------QTNRNRNVSVLRKLGV 199

Query:   134 PKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKK 193
             P+ L++ L++ + + +     R  + + ++ ++GFDP +  FV A+     +S    E+K
Sbjct:   200 PQRLLLNLLISRAKPVC-GKERFEESVKKIVEMGFDPKSPKFVNALYVFYELSDKTIEEK 258

Query:   194 LEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK-LSMEP--LIISKHPYLL 250
             + AY+  GL+ +EV++ F++ P  +  SE+ I +  +      L+ E   L++ K+P  +
Sbjct:   259 VNAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFETLKRVGLTKEEVCLVVKKYPECV 318

Query:   251 LFSLEKRILPRCSVLQL 267
               S EK +    + L+L
Sbjct:   319 GTSEEKIVKSVKTFLEL 335

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2036878 AT1G61990 "AT1G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 6.9e-16, P = 6.9e-16
 Identities = 64/245 (26%), Positives = 129/245 (52%)

Query:    15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
             + +  FR+ GF+DSQI +I    P   V + KK +  KL+  +S G +  ++ + +S+ P
Sbjct:    86 SVLSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQSRGASSSEITEIVSTVP 145

Query:    75 YIL-ERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGV 133
              IL ++S+  +     +I+  V DT  +    +  G         K+   N++ L   G+
Sbjct:   146 RILGKKSITVYYDAVKDII--VADTSSSY--ELPQGS-----QGNKIR--NVSALRELGM 194

Query:   134 PKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKK 193
             P  L++ L++ + + +       +  + +V ++GFDPT   FVLA+R +  MS+   E+K
Sbjct:   195 PSRLLLPLLVSKSQPVC-GKENFDASLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEK 253

Query:   194 LEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK-LSMEP--LIISKHPYLL 250
             +  + + G T D+V+  F++ P  + VS++KI K  + +++   S     +++ ++P  +
Sbjct:   254 VVVFRSLGFTVDDVWEIFKKTPSVLKVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCI 313

Query:   251 LFSLE 255
              +S+E
Sbjct:   314 EYSVE 318

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2036843 AT1G61960 "AT1G61960" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 62/237 (26%), Positives = 117/237 (49%)

Query:    24 GFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLEN 83
             GF+ SQI SI    P+    + +K + PKL+  +S G +  ++ + +S+ P IL +    
Sbjct:    95 GFTKSQISSIITIYPRLLALDAEKSIAPKLQSLQSRGASSSELTQIVSTVPKILGKRGHK 154

Query:    84 HIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLML 143
              I    + ++ +++ D++   +    C       +K    NI++L   GV + L+  L++
Sbjct:   155 SITVYYDFVKDIIEADKS--SSYEKLCHSFPQGNKKNKIRNISVLRELGVAQRLLFPLLI 212

Query:   144 IQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLT 203
                + +     R  + + +V ++GFDP    FV A+R +  MS    E+K+  Y   G  
Sbjct:   213 SDGQPVC-GKERFEESLKKVVEMGFDPETTKFVEALRVIYRMSDKTIEEKVNVYKRLGFG 271

Query:   204 KDEVYSAFRRQPMFMIVSEQKISK----LMDCYVNKLSMEPLIISKHPYLLLFSLEK 256
               +V++ F++ P F+  SE+KI+     L  C + K  +  L++ KHP  +  S +K
Sbjct:   272 VADVWAIFKKWPSFLSYSEKKITHTFETLKSCGLLKHEVL-LLLKKHPKCICSSEQK 327

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
pfam02536	345	pfam02536, mTERF, mTERF	7e-18
pfam02536	345	pfam02536, mTERF, mTERF	2e-11
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	6e-05
pfam02536	345	pfam02536, mTERF, mTERF	0.001

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 82.5 bits (204), Expect = 7e-18
 Identities = 56/243 (23%), Positives = 113/243 (46%), Gaps = 3/243 (1%)

Query: 20  FRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILER 79
            R+ GF+DS I +I    P     + +K ++PKL+F +S G ++ ++ K +S+ P IL +
Sbjct: 4   LRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGK 63

Query: 80  SLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVV 139
                I    + L++++  D +    +      L          N+++L   GVP  L+ 
Sbjct: 64  KGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLF 123

Query: 140 KLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAV--MSKALWEKKLEAY 197
            L++ +PR +        + + +V ++GFDPT    V+A R   +   S    +  +E  
Sbjct: 124 SLLISRPRPVCGKE-VFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL 182

Query: 198 MNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKR 257
            + G + ++V++  ++ P  +  SE+K  +  +       +E L + K     +   E++
Sbjct: 183 KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQK 242

Query: 258 ILP 260
           IL 
Sbjct: 243 ILN 245

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)

Query: 112 VLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPT 171
           +L Y  +K ++PN+  L + G     V   +L +   LL S+ +      E+ K      
Sbjct: 166 LLLYSSDKTIKPNVEFLKSLGFSVEDVW-AILKKCPELLGSSEKKKLQTQEILKTCGLLE 224

Query: 172 NLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDC 231
            L  +  +      S+     K+E  +  G +++E+    +R P  + +S +K+ K  + 
Sbjct: 225 FLSVIKKMPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEF 284

Query: 232 YVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQF 291
            V +++     + + P +  +SLEKRI PRC+V++ LMS        SL+ M K T+++F
Sbjct: 285 LVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSIL-PSLSSMLKCTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 56/275 (20%), Positives = 111/275 (40%), Gaps = 45/275 (16%)

Query: 24  GFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLEN 83
           G +   I  +  + P+     +   +KPK+++ +SLG   L +A+ L  +PYIL   LE 
Sbjct: 207 GVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEE 266

Query: 84  HIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLML 143
            + P +E L         V K      ++ +Y       P+I           L +K  L
Sbjct: 267 TVKPNVECLLEF-----GVRKEALPS-VIAQY-------PDIL---------GLDLKAKL 304

Query: 144 IQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLA-IRSMAVMSKALWEKKLEAYMNFGL 202
            + +  L S            KL  DP +   V+  +  +  +++ +  K +E     G 
Sbjct: 305 AEQQYWLTS------------KLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGF 352

Query: 203 TKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL--SMEPLIISKHPYLLLFSLEKRILP 260
           +  +V     R P  + ++ + +   ++ +  ++   ++ L+  + P    + LE RI P
Sbjct: 353 SAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELV--EFPAYFTYGLESRIKP 410

Query: 261 RCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERI 295
           R   +      K I    SL +    ++ +F +R+
Sbjct: 411 RYERVA----KKGIK--CSLAWFLNCSDDKFEQRM 439

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 91  ILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLL 150
           +LR +  TD  +   IR   L+L  D EK L+P +  L + G  KS + K++   P+ L 
Sbjct: 3   LLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILG 62

Query: 151 QSTAR-LNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKAL--WEKKLEAYMNFGLTKDEV 207
           +   + ++ + D +KK+     +    L     ++         + +      G+    +
Sbjct: 63  KKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLL 122

Query: 208 YSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLI----ISKHPYLLLFSLEKRILPRCS 263
           +S    +P    V  +++ +     V ++  +P      I+K P LLL+S +K I P   
Sbjct: 123 FSLLISRPRP--VCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVE 180

Query: 264 VLQLL 268
            L+ L
Sbjct: 181 FLKSL 185

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.96
KOG1267	413	consensus Mitochondrial transcription termination	99.8
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.39
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.25
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	96.16
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	92.74
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	91.28
PF04695	136	Pex14_N: Peroxisomal membrane anchor protein (Pex1	82.96
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	80.44

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.1e-58  Score=446.00  Aligned_cols=295  Identities=14%  Similarity=0.267  Sum_probs=238.1

Q ss_pred             ccccccccCChH----HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCcccc
Q 020786            3 NKEHRVLESDAY----ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILE   78 (321)
Q Consensus         3 ~~~P~vL~~~~~----~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~   78 (321)
                      .++|.+|+++++    ++++||+++|++.++|++++.++|.+|.+++++++.|+++||+++|+++++|++++.++|++|+
T Consensus       110 ~~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~  189 (487)
T PLN03196        110 NEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLG  189 (487)
T ss_pred             ccCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhc
Confidence            467777777665    3677777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccccccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecch-hHH
Q 020786           79 RSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTA-RLN  157 (321)
Q Consensus        79 ~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~-~~~  157 (321)
                      +++++++.|+++||.++|++.+++++++.++|++|+++++++++|+++||+++|++.++|.+++.++|++++++.+ +++
T Consensus       190 ~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lk  269 (487)
T PLN03196        190 FKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVK  269 (487)
T ss_pred             CCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHH
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777777765 667


Q ss_pred             HHHHHHHHcCCCCCchh--------------------------------------HHHHHHHHhhcCHHHHHHHHHHHHH
Q 020786          158 KIIDEVKKLGFDPTNLL--------------------------------------FVLAIRSMAVMSKALWEKKLEAYMN  199 (321)
Q Consensus       158 ~~v~~l~~lG~~~~~~~--------------------------------------~~~~~~~~~~~~~~~l~~~v~~l~~  199 (321)
                      ++++++.++|++++...                                      +..+.+.+.+.++++++++++||++
T Consensus       270 p~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~  349 (487)
T PLN03196        270 PNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRG  349 (487)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHH
Confidence            77777777776643211                                      2222344556788999999999999


Q ss_pred             cCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhhCCccccCCccCcchhHHHHHHHHHhCCCCCCCcc
Q 020786          200 FGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFS  279 (321)
Q Consensus       200 lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~~P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~~~  279 (321)
                      +||+.++|..||.++|++|++|.++|++|++||+++||++.++|+++|++|+||+|+||+|||+++   +++|+   .++
T Consensus       350 ~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L---~~kGl---~~s  423 (487)
T PLN03196        350 RGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERV---AKKGI---KCS  423 (487)
T ss_pred             cCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHH---HHcCC---CCC
Confidence            999999999999999999999999999999999999999999999999999999999999999874   68998   689


Q ss_pred             cccccccChhhHHHHHhhhccCCh
Q 020786          280 LTYMFKMTEKQFIERIVKKYEHKV  303 (321)
Q Consensus       280 l~~~l~~s~~~F~~~~~~~~~~~~  303 (321)
                      +.++|+|||++|+++|+.+|.|.-
T Consensus       424 L~~~L~~sd~~F~~r~v~~y~e~~  447 (487)
T PLN03196        424 LAWFLNCSDDKFEQRMSGDFIEGE  447 (487)
T ss_pred             HHHHhccCHHHHHHHHhhhccccc
Confidence            999999999999999999998843

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=6.6e-51  Score=380.63  Aligned_cols=289  Identities=25%  Similarity=0.420  Sum_probs=207.2

Q ss_pred             cccccccccCChHH----HHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccc
Q 020786            2 LNKEHRVLESDAYA----TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYIL   77 (321)
Q Consensus         2 v~~~P~vL~~~~~~----~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL   77 (321)
                      |+++|.+|.++++.    .++||++.|++..|+++++.++|.+|..+.++++.|.++||+++|++++++.+++.++|++|
T Consensus        18 i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l   97 (345)
T PF02536_consen   18 IRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRIL   97 (345)
T ss_dssp             HH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHH
T ss_pred             HHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhh
Confidence            67899999998885    48999999999999999999999999999888999999999999999999999999999999


Q ss_pred             cccccccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeec-chhH
Q 020786           78 ERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQS-TARL  156 (321)
Q Consensus        78 ~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~-~~~~  156 (321)
                      ..+.+.++.+++++|+++|++++.+.+.+..+|.++...  +++++.++++.++|++++++.+++..+|+++... .+.+
T Consensus        98 ~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~  175 (345)
T PF02536_consen   98 SFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESEL  175 (345)
T ss_dssp             HS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCC
T ss_pred             ccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHH
Confidence            998888899999999999998876777777777544333  2355555555555555555555555555333222 2344


Q ss_pred             HHHHHHHHHcCCCCCc--h--------------------------------hHHHHHHHHhhcCHHHHHHHHHHHHHcCC
Q 020786          157 NKIIDEVKKLGFDPTN--L--------------------------------LFVLAIRSMAVMSKALWEKKLEAYMNFGL  202 (321)
Q Consensus       157 ~~~v~~l~~lG~~~~~--~--------------------------------~~~~~~~~~~~~~~~~l~~~v~~l~~lG~  202 (321)
                      ++++++++++|++.++  .                                .+....+.++..+.++++++++||.++||
T Consensus       176 ~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~  255 (345)
T PF02536_consen  176 KPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGF  255 (345)
T ss_dssp             HHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcC
Confidence            5555555555544332  1                                22222333444567899999999999999


Q ss_pred             CHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhhCCccccCCccCcchhHHHHHHHHHhCCCCCCCccccc
Q 020786          203 TKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTY  282 (321)
Q Consensus       203 ~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~~P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~~~l~~  282 (321)
                      +++|+++|+.++|+||++|.+++++|++||.++||++.++|+++|++|+||+|+||+|||+++++|+++|. ...+++.+
T Consensus       256 s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~sl~~  334 (345)
T PF02536_consen  256 SEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPSLSS  334 (345)
T ss_dssp             -HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGGS-H
T ss_pred             cHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997 56899999


Q ss_pred             ccccChhhHHH
Q 020786          283 MFKMTEKQFIE  293 (321)
Q Consensus       283 ~l~~s~~~F~~  293 (321)
                      ++.+||++|++
T Consensus       335 ~l~~s~~~F~~  345 (345)
T PF02536_consen  335 MLSCSDEEFLK  345 (345)
T ss_dssp             HHHHHHHHHT-
T ss_pred             HhhccHHHhcC
Confidence            99999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2.6e-45  Score=353.25  Aligned_cols=273  Identities=16%  Similarity=0.274  Sum_probs=221.5

Q ss_pred             HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHH
Q 020786           15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRR   94 (321)
Q Consensus        15 ~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~   94 (321)
                      ++++||+++|++.+||.    ++|.+|++++++++.|+++||.++|++..+|+++|.++|.+|..|+++++.|+++||++
T Consensus        94 ~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~  169 (487)
T PLN03196         94 ERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQG  169 (487)
T ss_pred             HHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHH
Confidence            46999999999999997    79999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecch-hHHHHHHHHHHcCCCCCc-
Q 020786           95 VLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTA-RLNKIIDEVKKLGFDPTN-  172 (321)
Q Consensus        95 ~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~-~~~~~v~~l~~lG~~~~~-  172 (321)
                      +|++++++.+++.++|++|++++++++.++++||.++|++.+++.+++.++|++|+++.+ ++.++++||.++|++.+. 
T Consensus       170 lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I  249 (487)
T PLN03196        170 LDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAV  249 (487)
T ss_pred             cCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999986 789999999999999886 


Q ss_pred             -hhHHHHHHHHhhcCHHHHHHHHHHHHHcCCCHHHHHHHhhccCccccccHHH-HhhHHHHHHHhcCCChHHH----hhC
Q 020786          173 -LLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQK-ISKLMDCYVNKLSMEPLII----SKH  246 (321)
Q Consensus       173 -~~~~~~~~~~~~~~~~~l~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~-l~~k~~fL~~~~g~~~~~i----~~~  246 (321)
                       ..+.++|.++....++++++++++|.++|++.+++..++.++|.+++++.+. ++++++|+.+++|++.+++    .++
T Consensus       250 ~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~  329 (487)
T PLN03196        250 ARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKL  329 (487)
T ss_pred             HHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhc
Confidence             3455567666655566888888888888888887777777777777777653 6666666665666665543    345


Q ss_pred             CccccCCccCcchhHHHHHHHHHhCCCCCCCc-----ccccccccChhhHHHHH
Q 020786          247 PYLLLFSLEKRILPRCSVLQLLMSNKVITEDF-----SLTYMFKMTEKQFIERI  295 (321)
Q Consensus       247 P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~~-----~l~~~l~~s~~~F~~~~  295 (321)
                      |+++++|.+ ++.+|..++   .+.|+..+++     ....++++|.+....++
T Consensus       330 P~il~lSe~-kl~~kvefL---~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~  379 (487)
T PLN03196        330 PQIVSLNRN-VALKHVEFL---RGRGFSAQDVAKMVVRCPQILALNLEIMKPSL  379 (487)
T ss_pred             chhhcccHH-HHHHHHHHH---HHcCCCHHHHHHHHHhCCceeeccHHHHHHHH
Confidence            666666654 455554433   3455543322     34445555555444433

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.9e-38  Score=296.57  Aligned_cols=273  Identities=29%  Similarity=0.522  Sum_probs=218.6

Q ss_pred             HHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHhh
Q 020786           17 VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVL   96 (321)
Q Consensus        17 l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~g   96 (321)
                      .++|+++||+++||.++++++|.++.+++++++.|+++||.++|++..++++++++||.+|..++++++.|.++||+++|
T Consensus         1 ~~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~   80 (345)
T PF02536_consen    1 EDLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIG   80 (345)
T ss_dssp             -HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTS
T ss_pred             ChHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCc--hh
Q 020786           97 DTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN--LL  174 (321)
Q Consensus        97 ~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~--~~  174 (321)
                      ++++++.+++.++|++|+.+.+.++.+++++|+++|++.+.+..++...|..+... +++.+.++++.++|++++.  ..
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~-~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS-EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS--HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch-hHHHHHHHHHHHhCCCchhhccc
Confidence            99999999999999999998887999999999999999998999999999877766 8999999999999999987  45


Q ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHcCCCHHHHHHHhhccCccccccHHH------------------------------
Q 020786          175 FVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQK------------------------------  224 (321)
Q Consensus       175 ~~~~~~~~~~~~~~~l~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~------------------------------  224 (321)
                      ...+|..+...++++++++++||+++|++.+++.+++.++|.++..|+++                              
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~  239 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLS  239 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THH
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccc
Confidence            66678888888899999999999999999999999999999999888864                              


Q ss_pred             ---HhhHHHHHHHhcCCChHHH----hhCCccccCCccCcchhHHHHHHHHHhCCCCCCC-cccccccccChh-hHHHH
Q 020786          225 ---ISKLMDCYVNKLSMEPLII----SKHPYLLLFSLEKRILPRCSVLQLLMSNKVITED-FSLTYMFKMTEK-QFIER  294 (321)
Q Consensus       225 ---l~~k~~fL~~~~g~~~~~i----~~~P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~-~~l~~~l~~s~~-~F~~~  294 (321)
                         ++++++||.+ +|++.++|    .++|++|++|.++ ++|+++++.  .+.|...++ ...+.++.+|=+ +-.-+
T Consensus       240 ~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~--~~m~~~~~~i~~~P~~l~~sLe~ri~PR  314 (345)
T PF02536_consen  240 EEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLV--KEMGLPLEEIVEFPQYLSYSLEKRIKPR  314 (345)
T ss_dssp             HHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHH--HCCT--HHHHHHSCHHHCS-HHHHHHHH
T ss_pred             hHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHH--HHhCcCHHHHhhCCceeEechhhhhhhH
Confidence               8889999988 89999886    5699999999995 999988764  345664322 234556776653 44434

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.96  E-value=3.2e-28  Score=232.25  Aligned_cols=256  Identities=23%  Similarity=0.342  Sum_probs=221.2

Q ss_pred             cCChHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHH
Q 020786           10 ESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCI   89 (321)
Q Consensus        10 ~~~~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v   89 (321)
                      ..+|++++++|+++|+++++|..++..+|.++..+.++.+.++..+|...|++..++.++++..|.+|+.+...++.+.+
T Consensus        88 ~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~  167 (413)
T KOG1267|consen   88 SVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFI  167 (413)
T ss_pred             ccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHH
Confidence            45888999999999999999999999999999999999999999999999999999999999989998877777777777


Q ss_pred             HHHHHhh-----------------------------------cCcHHHHHH-----------------------------
Q 020786           90 EILRRVL-----------------------------------DTDENVLKA-----------------------------  105 (321)
Q Consensus        90 ~~L~~~g-----------------------------------~~~~~v~~~-----------------------------  105 (321)
                      +|+.+++                                   ...+.+...                             
T Consensus       168 ~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~p~  247 (413)
T KOG1267|consen  168 EFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPRPVLLYLKLKARLPFLLTLGFDPK  247 (413)
T ss_pred             HHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCccceeeehhhhhhhhhHHHhccCCc
Confidence            7777753                                   233333332                             


Q ss_pred             ---HHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 020786          106 ---IRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSM  182 (321)
Q Consensus       106 ---l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~~~~~~~~~~~  182 (321)
                         +.++|.+++++.++++++++++|+++|++.++++.++.++|++++++.+++...++++.+.  .++   +.+.|.. 
T Consensus       248 ~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~--~~~---~~k~p~~-  321 (413)
T KOG1267|consen  248 TREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN--PKH---ILKFPQL-  321 (413)
T ss_pred             hhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc--chh---hhhhhhh-
Confidence               2334555555788899999999999999999999999999999999999999999998766  222   3334444 


Q ss_pred             hhcCHHHHHHHHHHHHHcCCCHHHHHHHhhccCccccccHH-HHhhHHHHHHHhcCCChHHHhhCCccccCCccCcchhH
Q 020786          183 AVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQ-KISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPR  261 (321)
Q Consensus       183 ~~~~~~~l~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~-~l~~k~~fL~~~~g~~~~~i~~~P~~L~~sle~ri~pR  261 (321)
                      ...++..+.++++|+..+|++..|+..|+.++|+++.+|++ .++.+.+|+.+.|+.+.++++.+|++++|++++|++||
T Consensus       322 l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr  401 (413)
T KOG1267|consen  322 LRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPR  401 (413)
T ss_pred             hhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhH
Confidence            47889999999999999999999999999999999999999 69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 020786          262 CSVLQLLMSN  271 (321)
Q Consensus       262 ~~~l~~L~~~  271 (321)
                      +.+..++..+
T Consensus       402 ~~~~~~~~~~  411 (413)
T KOG1267|consen  402 FNVIKKLGVK  411 (413)
T ss_pred             HHHHHHHhcc
Confidence            9998876543

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.80  E-value=1.9e-19  Score=171.92  Aligned_cols=211  Identities=26%  Similarity=0.332  Sum_probs=167.9

Q ss_pred             chhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHH
Q 020786           48 CMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAI  127 (321)
Q Consensus        48 ~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~  127 (321)
                      +-...+++|++.|++..++.+++..+|.++..+.++.+.|+..+|...|.+...+.+++..-|.+|+.+.+.++.+.++|
T Consensus        90 ~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~  169 (413)
T KOG1267|consen   90 NPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEF  169 (413)
T ss_pred             CcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHH
Confidence            57788899999999999999999999999999999999999999999999988888888887777775544445555555


Q ss_pred             H-----------------------------------HHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCc
Q 020786          128 L-----------------------------------VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN  172 (321)
Q Consensus       128 L-----------------------------------~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~  172 (321)
                      +                                   .++|+.+..+..++...|..+.... .+...+.++..+|+++.+
T Consensus       170 l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~  248 (413)
T KOG1267|consen  170 LKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFLLTLGFDPKT  248 (413)
T ss_pred             hhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhHHHhccCCch
Confidence            4                                   4455566666666666777666554 677888899999999999


Q ss_pred             hhHHHHHHHHhhcCHHHHHHHHHHHHHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhhCCccccC
Q 020786          173 LLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLF  252 (321)
Q Consensus       173 ~~~~~~~~~~~~~~~~~l~~~v~~l~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~~P~~L~~  252 (321)
                      .++++++..+.+.+++++++++++|+++||+.+||++|+.++|++|++|.+++..+++|+.+.    .+++.++|+++.+
T Consensus       249 ~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~----~~~~~k~p~~l~~  324 (413)
T KOG1267|consen  249 REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN----PKHILKFPQLLRS  324 (413)
T ss_pred             hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc----chhhhhhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999765555555554    2225555555544


Q ss_pred             CccCcchhHHHH
Q 020786          253 SLEKRILPRCSV  264 (321)
Q Consensus       253 sle~ri~pR~~~  264 (321)
                      |.. .+.+|+++
T Consensus       325 s~~-~l~~~ie~  335 (413)
T KOG1267|consen  325 SED-KLKPRIEF  335 (413)
T ss_pred             cch-hhhhhHHH
Confidence            433 45555443

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.39  E-value=0.00015  Score=42.13  Aligned_cols=30  Identities=17%  Similarity=0.321  Sum_probs=26.0

Q ss_pred             HHhhccCccccccHHHHhhHHHHHHHhcCCC
Q 020786          209 SAFRRQPMFMIVSEQKISKLMDCYVNKLSME  239 (321)
Q Consensus       209 ~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~  239 (321)
                      .++.++|.++++|.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4688999999999888999999999 68874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.25  E-value=0.00026  Score=41.02  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=15.6

Q ss_pred             HHHhCCccccccchhhhhhHHHHHHHcCC
Q 020786          105 AIRAGCLVLEYDIEKVLEPNIAILVNHGV  133 (321)
Q Consensus       105 ~l~~~P~lL~~s~~~~l~~~v~~L~~lG~  133 (321)
                      ++.++|.+++++ +++++++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            455555555555 3345555555555554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=96.16  E-value=0.033  Score=51.74  Aligned_cols=224  Identities=15%  Similarity=0.085  Sum_probs=120.5

Q ss_pred             hCCCChHHHHHHHhhCCCccccCcc-------cchhhhHHHHHh--cCCChhHHHHHHhhCCccccccccccc-hhHHHH
Q 020786           22 TNGFSDSQIKSITVKRPKFYVYNLK-------KCMKPKLEFFKS--LGFAELQMAKFLSSQPYILERSLENHI-IPCIEI   91 (321)
Q Consensus        22 ~lG~s~~~i~~lv~~~P~lL~~~~~-------~~l~~~v~~L~~--lG~~~~~i~~il~~~P~iL~~s~~~~l-~~~v~~   91 (321)
                      .+|+..-.+.+.+.+||.++.....       -.+.+...-|.+  ..+-.+.-..++.+=-.+|.+|.++.| ..+++.
T Consensus        46 ~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~  125 (335)
T PF11955_consen   46 QLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAH  125 (335)
T ss_pred             hcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHH
Confidence            6999778899999999998865321       113344433331  222111113334444456777766653 335666


Q ss_pred             HH-HhhcCcHHHHHHHHhCCccccccc---hhhhhhHHHHHHHcCCChhhHHHhhh-------------hCCcce--eec
Q 020786           92 LR-RVLDTDENVLKAIRAGCLVLEYDI---EKVLEPNIAILVNHGVPKSLVVKLML-------------IQPRTL--LQS  152 (321)
Q Consensus        92 L~-~~g~~~~~v~~~l~~~P~lL~~s~---~~~l~~~v~~L~~lG~~~~~i~~ll~-------------~~P~il--~~~  152 (321)
                      ++ ++|++++-...++.++|..+....   +...-..+.|=.++.++.-+......             .+|--+  ++.
T Consensus       126 l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~  205 (335)
T PF11955_consen  126 LRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFR  205 (335)
T ss_pred             HHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCcc
Confidence            66 799998888889999998876532   11122223332235554433332210             112111  111


Q ss_pred             c-hhHHHHHHHHHHc----------CCCCCchhHH-HH---HHHHhhcC--HHHHHHHHHHHH-HcCCCHHHHHHHhhcc
Q 020786          153 T-ARLNKIIDEVKKL----------GFDPTNLLFV-LA---IRSMAVMS--KALWEKKLEAYM-NFGLTKDEVYSAFRRQ  214 (321)
Q Consensus       153 ~-~~~~~~v~~l~~l----------G~~~~~~~~~-~~---~~~~~~~~--~~~l~~~v~~l~-~lG~~~~~v~~~i~~~  214 (321)
                      . .+..++++-++++          |+++++..+- ++   ...++.+.  .....+++..|+ ++|++ ..+..++.+|
T Consensus       206 l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~rH  284 (335)
T PF11955_consen  206 LKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLLRH  284 (335)
T ss_pred             ccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHHhC
Confidence            1 3566677777765          3344432222 22   23333332  223556666676 89998 5688899999


Q ss_pred             CccccccHHHHhhHHHHHHHhcCCChHH-HhhCCcc
Q 020786          215 PMFMIVSEQKISKLMDCYVNKLSMEPLI-ISKHPYL  249 (321)
Q Consensus       215 P~iL~~s~~~l~~k~~fL~~~~g~~~~~-i~~~P~~  249 (321)
                      |.|+..|.. -+.-.=||.+  ++...+ |.++|.+
T Consensus       285 PgIFYvS~k-g~~~TVfLrE--AY~~~~Liek~Pl~  317 (335)
T PF11955_consen  285 PGIFYVSLK-GKRHTVFLRE--AYDGGELIEKHPLV  317 (335)
T ss_pred             CCeEEEecc-CCceEEEEee--ccCCCCCCCCCchH
Confidence            999999864 2222334444  333333 5567776

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=92.74  E-value=0.65  Score=38.99  Aligned_cols=23  Identities=13%  Similarity=0.271  Sum_probs=16.3

Q ss_pred             hhHHHHHhcCCChhHHHHHHhhC
Q 020786           51 PKLEFFKSLGFAELQMAKFLSSQ   73 (321)
Q Consensus        51 ~~v~~L~~lG~~~~~i~~il~~~   73 (321)
                      ..+..|+++|++-++|..++...
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~   71 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQP   71 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcC
Confidence            55666777888888887777543

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=91.28  E-value=1  Score=37.84  Aligned_cols=114  Identities=13%  Similarity=0.184  Sum_probs=59.1

Q ss_pred             HHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHh----cCCChhHHHHHHhhCCccccccccccchhHHHH
Q 020786           16 TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKS----LGFAELQMAKFLSSQPYILERSLENHIIPCIEI   91 (321)
Q Consensus        16 ~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~----lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~   91 (321)
                      .+..|+++|++-++|..++.....    +....+..+++.+..    +--....+..++...+.. ...-.-+....++.
T Consensus        50 ~I~~lr~~G~sL~eI~~ll~~~~~----~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~-~~~~~V~~~~w~~l  124 (172)
T cd04790          50 QICAYRSAGVSLEDIRSLLQQPGD----DATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLL-KEQRLVTKEKWVAI  124 (172)
T ss_pred             HHHHHHHcCCCHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccCCHHHHHHH
Confidence            378889999999999999875542    111123333333331    222233444444333322 11100113445566


Q ss_pred             HHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHh
Q 020786           92 LRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKL  141 (321)
Q Consensus        92 L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~l  141 (321)
                      ++..|+++++....=..+-   ..+++    .-.+||.++|++.+++..+
T Consensus       125 ~~~~g~~~~~m~~wh~~fe---~~~p~----~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         125 LKAAGMDEADMRRWHIEFE---KMEPE----AHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHcCCChHHHHHHHHHHH---HhCcH----HHHHHHHHcCCCHHHHHHH
Confidence            6777777666433221110   12333    3567888888888877554

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes

Probab=82.96  E-value=1.5  Score=35.29  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             HhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccc
Q 020786           34 TVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYIL   77 (321)
Q Consensus        34 v~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL   77 (321)
                      +-.+|.+-...    +..|++||++.|++.++|...+.+.+.--
T Consensus        12 FL~~p~V~~sp----~~~k~~FL~sKGLt~~EI~~al~~a~~~~   51 (136)
T PF04695_consen   12 FLQDPKVRNSP----LEKKIAFLESKGLTEEEIDEALGRAGSPP   51 (136)
T ss_dssp             HHCTTTCCCS-----HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred             HhCCcccccCC----HHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence            44577765433    66788888888888888888887766544

Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=80.44  E-value=14  Score=34.47  Aligned_cols=219  Identities=18%  Similarity=0.252  Sum_probs=119.8

Q ss_pred             HHHHHHhhCCCccccCcccchhhhHHHH-HhcCCChhHHHHHHhhCCccccccc---cc----cchhHHHHHHH--hhc-
Q 020786           29 QIKSITVKRPKFYVYNLKKCMKPKLEFF-KSLGFAELQMAKFLSSQPYILERSL---EN----HIIPCIEILRR--VLD-   97 (321)
Q Consensus        29 ~i~~lv~~~P~lL~~~~~~~l~~~v~~L-~~lG~~~~~i~~il~~~P~iL~~s~---~~----~l~~~v~~L~~--~g~-   97 (321)
                      .+..++.+.|.-   .+  .+ ..+.-+ ..+|++...+.+.+.+||.++....   ..    .+.+...-|.+  ..+ 
T Consensus        22 ~l~~~i~~~p~~---~~--pl-~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~   95 (335)
T PF11955_consen   22 RLKDLILSQPSH---SL--PL-RDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVR   95 (335)
T ss_pred             HHHHHHHcCCCC---cc--cH-HHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHH
Confidence            456677777761   11  12 223333 3699977999999999999986543   11    14444444432  111 


Q ss_pred             --CcHHHHHHHHhCCccccccchhhh-hhHHHHHH-HcCCChhhHHHhhhhCCcceeecc----hhHHHHHHHHHHcCCC
Q 020786           98 --TDENVLKAIRAGCLVLEYDIEKVL-EPNIAILV-NHGVPKSLVVKLMLIQPRTLLQST----ARLNKIIDEVKKLGFD  169 (321)
Q Consensus        98 --~~~~v~~~l~~~P~lL~~s~~~~l-~~~v~~L~-~lG~~~~~i~~ll~~~P~il~~~~----~~~~~~v~~l~~lG~~  169 (321)
                        ...++..-++   .+|.+|.++.+ -.++..++ ++|+|.+-...++.++|..|....    ....+-+.|=.++.++
T Consensus        96 ~~~e~~~v~rL~---KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs  172 (335)
T PF11955_consen   96 EEMEPDLVERLR---KLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVS  172 (335)
T ss_pred             HhChHHHHHHHH---HHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcC
Confidence              2334444444   36767766544 34566776 699999999999999999886532    0111111111112221


Q ss_pred             CCchh--------------HHHHHHHHh--h-cCHHHHHHHHHHHHHc----------CCC---HHHHHHHhhccCcccc
Q 020786          170 PTNLL--------------FVLAIRSMA--V-MSKALWEKKLEAYMNF----------GLT---KDEVYSAFRRQPMFMI  219 (321)
Q Consensus       170 ~~~~~--------------~~~~~~~~~--~-~~~~~l~~~v~~l~~l----------G~~---~~~v~~~i~~~P~iL~  219 (321)
                      .-+..              ...+++.-.  + ......+++++-++++          |+.   .+.=...+.-.=-+|+
T Consensus       173 ~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLS  252 (335)
T PF11955_consen  173 ALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLS  252 (335)
T ss_pred             ccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHH
Confidence            11100              000111000  0 1123455555555532          111   1111112222234677


Q ss_pred             ccHHH--HhhHHHHHHHhcCCChH---HHhhCCccccCCccC
Q 020786          220 VSEQK--ISKLMDCYVNKLSMEPL---IISKHPYLLLFSLEK  256 (321)
Q Consensus       220 ~s~~~--l~~k~~fL~~~~g~~~~---~i~~~P~~L~~sle~  256 (321)
                      +.+++  ...++..+.+++|+|..   .+.++|.+|..|...
T Consensus       253 LTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg  294 (335)
T PF11955_consen  253 LTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKG  294 (335)
T ss_pred             hhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccC
Confidence            77776  56789999999999964   578999999999764

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-44
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-15
3mva_O	343	Transcription termination factor, mitochondrial; a	9e-22
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  150 bits (381), Expect = 6e-44
 Identities = 56/291 (19%), Positives = 99/291 (34%), Gaps = 44/291 (15%)

Query: 16  TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPY 75
           T++     G   S+I+            + +K +K  L F K +G  + Q+  FL+    
Sbjct: 8   TLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67

Query: 76  ILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPK 135
           I    LEN                                     L+  +A L +    K
Sbjct: 68  IFSEDLEN-------------------------------------LKTRVAYLHSKNFSK 90

Query: 136 SLVVKLMLIQPRTLLQSTARLNKIIDEVKK---LGFDPTNLLFVLAIRSMAVMSKALWEK 192
           + V +++   P  L  S  RL+  +   +K   L    T  L V   R +    + + E 
Sbjct: 91  ADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKEN 150

Query: 193 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLF 252
                +  G   +E+     R P  +  ++ K+++  D   N +S+   II K P +   
Sbjct: 151 MKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNT 210

Query: 253 SLEKRILPRCSVLQLLMSNKVI---TEDFSLTYMFKMTEKQFIERIVKKYE 300
            L  ++  R   L  L   +         SL  +  + ++ F E I K   
Sbjct: 211 RLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASV 260

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 26/168 (15%), Positives = 68/168 (40%), Gaps = 4/168 (2%)

Query: 9   LESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAK 68
            E D    + F +  G  D+Q+ +   K    +  +L+  +K ++ +  S  F++  +A+
Sbjct: 37  FEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQ 95

Query: 69  FLSSQPYILERSLENHIIPCIEILRRVLD-TDENVLKAIRAGCLVLEYDIEKVLEPNIAI 127
            +   P++L  S+E  +   +   ++ L+ + +     +     +L   +E V E     
Sbjct: 96  MVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVY 154

Query: 128 LVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDE-VKKLGFDPTNLL 174
            +  G   + +  ++   P+ L  +  +L +  D     +      ++
Sbjct: 155 RLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIV 202

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 93.2 bits (231), Expect = 9e-22
 Identities = 47/332 (14%), Positives = 120/332 (36%), Gaps = 60/332 (18%)

Query: 15  ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 74
             ++   T G     I     ++P  +   +    +    F  S G ++  +A  +S  P
Sbjct: 21  DLLKNLLTMGVD---IDMARKRQPGVFHRMITN-EQDLKMFLLSKGASKEVIASIISRYP 76

Query: 75  YILERSLENHIIPCIEILRRVLDTDENVLKAI-RAGCLVLEYDIEKVLEPNIAILVNHGV 133
             + R+ E ++    ++ R+++ +D  ++  + R+       +    LE NI  L + G+
Sbjct: 77  RAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGL 135

Query: 134 PKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAV-------MS 186
            +  + +L+   PRT   S     ++++ ++  G    +      +R +          S
Sbjct: 136 TRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS 195

Query: 187 KALWEKKLEAYMN-FGLTKDEVYSAFRR-------------------------------- 213
               +  +E   + F L  +E+                                      
Sbjct: 196 TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEE 255

Query: 214 --------QPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVL 265
                    P  + ++E+K +  +DC +   ++    I ++P +L  S+   +  R   +
Sbjct: 256 EVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSR---I 310

Query: 266 QLLMSNKVITEDFSLTYMFKMTEKQFIERIVK 297
           + L++        ++T +   ++K++  ++ K
Sbjct: 311 KELVNAGCNLSTLNIT-LLSWSKKRYEAKLKK 341

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 13/180 (7%)

Query: 6   HRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGF---- 61
                 +    ++F  + G +   +  +    P+ +  +L    K  +EF ++ G     
Sbjct: 116 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGH 174

Query: 62  --AELQMAKFLSSQPYILERSLENHIIPCIEILRRVLD-TDENVLKAIRAGCLVL----E 114
                 + K +   P+IL +S +  +   IE LR   +   E +L  I      +     
Sbjct: 175 NDPADFVRKIIFKNPFILIQSTKR-VKANIEFLRSTFNLNSEELLVLICGPGAEILDLSN 233

Query: 115 YDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLL 174
               +        L + G  +  V K +L  P  +  +  + N  ID + +     + ++
Sbjct: 234 DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQII 293

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 53/339 (15%), Positives = 109/339 (32%), Gaps = 87/339 (25%)

Query: 8   VLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPK--LEFFKSLGFAELQ 65
            +  D   + +      F   +I         F++ NLK C  P+  LE  + L     Q
Sbjct: 165 WVALDVCLSYKVQCKMDF---KI---------FWL-NLKNCNSPETVLEMLQKL---LYQ 208

Query: 66  MAKFLSSQPYILERSLENHIIPCIEILRR------------VLDT--DENVLKAIRAGC- 110
           +    +S+       ++  I      LRR            VL    +     A    C 
Sbjct: 209 IDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 111 -LVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIID-EVKKL-- 166
            L+            +   ++      + +        T  +  + L K +D   + L  
Sbjct: 268 ILLTTRFK------QVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 167 ---GFDPTNL-LFVLAIRSMAVMSKALWE-----------KKLEAYMNFGLTKDEVYSAF 211
                +P  L +   +IR       A W+             +E+ +N  L   E    F
Sbjct: 321 EVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMF 375

Query: 212 RRQPMFM---IVSEQKISKLMDCYVNKLSMEPLIISK--HPYLLLFSLEKRILP-RCSVL 265
            R  +F     +    +S +   + + +  + +++    H Y L   +EK+      S+ 
Sbjct: 376 DRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSL---VEKQPKESTISIP 429

Query: 266 QLLMSNKV-ITEDFSLTYMFKMTEKQFIER--IVKKYEH 301
            + +  KV +  +++L        +  ++   I K ++ 
Sbjct: 430 SIYLELKVKLENEYAL-------HRSIVDHYNIPKTFDS 461

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 108/306 (35%)

Query: 45  LKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLK 104
             +      + +K +   +L           I+E SL              L+  E   +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTT---------IIESSLNV------------LEPAE--YR 372

Query: 105 AIRAGCLVLEYDI---EKVL--------EPNIAILVNHGVPKSLVVK--------LMLIQ 145
            +     V          +L        + ++ ++VN     SLV K        +  I 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 146 PRTLLQSTARL---NKIIDEVKKL-GFDPTNLL---------FVLA--------IRSMAV 184
               ++          I+D       FD  +L+           +            M +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 185 MSKAL----W-EKKLE----AYMNFGLTKD-----EVYSAF--RRQPMFMIVSEQKISKL 228
                    + E+K+     A+   G   +     + Y  +     P +    E+ ++ +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY----ERLVNAI 548

Query: 229 MDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTE 288
           +D ++ K+  E LI SK+                 +L++ +  +          +F+   
Sbjct: 549 LD-FLPKIE-ENLICSKY---------------TDLLRIALMAED-------EAIFEEAH 584

Query: 289 KQFIER 294
           KQ ++R
Sbjct: 585 KQ-VQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.96
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.29
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.58
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	91.1
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	89.39
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	89.19
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	88.53
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	84.09
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	82.53
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	82.31

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.3e-52  Score=390.03  Aligned_cols=287  Identities=17%  Similarity=0.259  Sum_probs=257.3

Q ss_pred             cccccccccC---ChHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCcccc
Q 020786            2 LNKEHRVLES---DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILE   78 (321)
Q Consensus         2 v~~~P~vL~~---~~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~   78 (321)
                      ++++|.++.+   +++++++||+++|++++||++++.++|.+|.++++ ++.|+++||+++|++++++++++.++|++|.
T Consensus        37 ~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl  115 (343)
T 3mva_O           37 RKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFF  115 (343)
T ss_dssp             HHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHH
T ss_pred             HHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHh
Confidence            4568888876   77889999999999999999999999999999965 7999999999999999999999999999544


Q ss_pred             cccc-ccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCC------hhhHHHhhhhCCcceee
Q 020786           79 RSLE-NHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP------KSLVVKLMLIQPRTLLQ  151 (321)
Q Consensus        79 ~s~~-~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~------~~~i~~ll~~~P~il~~  151 (321)
                      .+.+ +++.|+++||+++|++.+++.+++.++|++++++++++ ++++++|+++|++      .+.|.+++.++|.++++
T Consensus       116 ~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~  194 (343)
T 3mva_O          116 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQ  194 (343)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGS
T ss_pred             CCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcC
Confidence            4445 48999999999999999999999999999999999975 9999999987764      77899999999999999


Q ss_pred             cchhHHHHHHHHH-HcCCCCCch--hHHHHHHHHhhcCHHHHHHHHHHHH----HcCCCHHHHHHHhhccCccccccHHH
Q 020786          152 STARLNKIIDEVK-KLGFDPTNL--LFVLAIRSMAVMSKALWEKKLEAYM----NFGLTKDEVYSAFRRQPMFMIVSEQK  224 (321)
Q Consensus       152 ~~~~~~~~v~~l~-~lG~~~~~~--~~~~~~~~~~~~~~~~l~~~v~~l~----~lG~~~~~v~~~i~~~P~iL~~s~~~  224 (321)
                      +.++++++++|++ ++|+++++.  ++...++.+...+.+.++++++|+.    ++||+++|+..|+.++|++|++|.++
T Consensus       195 s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~  274 (343)
T 3mva_O          195 STKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK  274 (343)
T ss_dssp             CHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH
Confidence            9889999999999 599998752  2323244555567788999997776    69999999999999999999999999


Q ss_pred             HhhHHHHHHHhcCCChHHHhhCCccccCCccCcchhHHHHHHHHHhCCCCCCCcccc--cccccChhhHHHHHhhh
Q 020786          225 ISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLT--YMFKMTEKQFIERIVKK  298 (321)
Q Consensus       225 l~~k~~fL~~~~g~~~~~i~~~P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~~~l~--~~l~~s~~~F~~~~~~~  298 (321)
                      |+++++||.+ ||++.++|+++|++|+||+| ||+|||.   +|+++|+   +++++  ++|++||++|.++|.+-
T Consensus       275 l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~~~~~l~~s~~~F~~~~~~~  342 (343)
T 3mva_O          275 FNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTLNITLLSWSKKRYEAKLKKL  342 (343)
T ss_dssp             HHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSSCGGGGGSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCCcchhhcCCHHHHHHHHhcc
Confidence            9999999999 99999999999999999999 9999994   6688998   56666  89999999999999763

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2.8e-51  Score=369.27  Aligned_cols=253  Identities=20%  Similarity=0.306  Sum_probs=236.6

Q ss_pred             hHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHH
Q 020786           13 AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEIL   92 (321)
Q Consensus        13 ~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L   92 (321)
                      -.+++++|.++|++.++|.+....+|.+|++++++++.|+++||.++|+++++|+++++++|.+|++++++ +.|+++||
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            34689999999999999987777777779999999999999999999999999999999999999999998 99999999


Q ss_pred             HHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHH-HHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCC
Q 020786           93 RRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPT  171 (321)
Q Consensus        93 ~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L-~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~  171 (321)
                      +++|++++++.+++.++|++|++|+++ ++++++|| +++|++.+++.+++.++|++++.+.+                 
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-----------------  145 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-----------------  145 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-----------------
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-----------------
Confidence            999999999999999999999999995 99999999 57999999999999999999998864                 


Q ss_pred             chhHHHHHHHHhhcCHHHHHHHHHHH-HHcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhhCCccc
Q 020786          172 NLLFVLAIRSMAVMSKALWEKKLEAY-MNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLL  250 (321)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~v~~l-~~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~~P~~L  250 (321)
                                       +++++++++ .++||+.+|+..|+.++|+++++|.++++++++||.++||++.++|+++|++|
T Consensus       146 -----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l  208 (270)
T 3m66_A          146 -----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVF  208 (270)
T ss_dssp             -----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGG
T ss_pred             -----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHh
Confidence                             567788875 59999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCcchhHHHHHHHHHhCCCCCCC---cccccccccChhhHHHHHhhhccCC
Q 020786          251 LFSLEKRILPRCSVLQLLMSNKVITED---FSLTYMFKMTEKQFIERIVKKYEHK  302 (321)
Q Consensus       251 ~~sle~ri~pR~~~l~~L~~~g~~~~~---~~l~~~l~~s~~~F~~~~~~~~~~~  302 (321)
                      +||+| ||+|||+++++|.++|+.+++   +++.+++.+||++|+++|++.+.|+
T Consensus       209 ~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ee  262 (270)
T 3m66_A          209 NTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD  262 (270)
T ss_dssp             GSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred             hCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHH
Confidence            99999 999999999999999997654   6778899999999999999998443

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=291.94  Aligned_cols=224  Identities=13%  Similarity=0.129  Sum_probs=199.7

Q ss_pred             chhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHH
Q 020786           48 CMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAI  127 (321)
Q Consensus        48 ~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~  127 (321)
                      .+...+.+|.++|+++++|+++++++|.++..    ++.+.+.||.++|++.++|.+++.++|++|++|++ +++++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            47788899999999999999999999999864    47789999999999999999999999999999997 59999999


Q ss_pred             HHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCCCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHH
Q 020786          128 LVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDE  206 (321)
Q Consensus       128 L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~  206 (321)
                      |+++|++.+++.+++.++|++++++.                                  +.+++++.+|. ++||+.++
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~----------------------------------e~i~~~v~~L~~~lGfS~~e  165 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQ----------------------------------QDINDTVRLLKEKCLFTVQQ  165 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHHTSCCCHHH
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccCh----------------------------------HHHHHHHHHHHHHcCCCHHH
Confidence            99999999999999999999999885                                  45677777876 89999999


Q ss_pred             HHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhhCCccccCCccCcchhHHHHHHHHHhC-------CCCCCCcc
Q 020786          207 VYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSN-------KVITEDFS  279 (321)
Q Consensus       207 v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~~P~~L~~sle~ri~pR~~~l~~L~~~-------g~~~~~~~  279 (321)
                      |..||.++|+||++|.++|++|++||+++||+++++|++ |.+|+||++ ||+|||.+|+.|...       +...++++
T Consensus       166 v~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~nps  243 (335)
T 4fp9_B          166 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL  243 (335)
T ss_dssp             HHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCC
T ss_pred             HHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCcc
Confidence            999999999999999999999999999999999999997 999999999 999999999877432       12223568


Q ss_pred             cccccccChhhHHHHHhhhccCChhHHHHHHhc
Q 020786          280 LTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQG  312 (321)
Q Consensus       280 l~~~l~~s~~~F~~~~~~~~~~~~~~~~~~~~~  312 (321)
                      |.+++..||++|+.++++.+.++...+.+++..
T Consensus       244 L~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~  276 (335)
T 4fp9_B          244 LKDILRVSEAEFLARTACTSVEEFQVFKKLLAR  276 (335)
T ss_dssp             HHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999999999986666666665544

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=4.9e-37  Score=285.21  Aligned_cols=273  Identities=13%  Similarity=0.182  Sum_probs=233.2

Q ss_pred             hHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHH
Q 020786           13 AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEIL   92 (321)
Q Consensus        13 ~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L   92 (321)
                      ++.++++|.++|++.++   +++++|.++..+++ +..+.++||+++|++.++|++++.++|.+|..+. +++.|+++||
T Consensus        19 ~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL   93 (343)
T 3mva_O           19 NEDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDLW   93 (343)
T ss_dssp             -CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHHH
Confidence            34589999999999666   46789999999887 5899999999999999999999999999999995 5799999999


Q ss_pred             HHhhcCcHHHHHHHHhCCc-cccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCCC-
Q 020786           93 RRVLDTDENVLKAIRAGCL-VLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDP-  170 (321)
Q Consensus        93 ~~~g~~~~~v~~~l~~~P~-lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~~-  170 (321)
                      +++|++++++.+++.++|+ +++.+.+++++|+++||+++|++.++|.+++.++|++++++.+++++++++++++|++. 
T Consensus        94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g  173 (343)
T 3mva_O           94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLG  173 (343)
T ss_dssp             TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcC
Confidence            9999999999999999999 55655545899999999999999999999999999999999998899999999887652 


Q ss_pred             ----Cc--h-hHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhcc-CccccccHHHHhhHHHHHHH---hcCC
Q 020786          171 ----TN--L-LFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQ-PMFMIVSEQKISKLMDCYVN---KLSM  238 (321)
Q Consensus       171 ----~~--~-~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~-P~iL~~s~~~l~~k~~fL~~---~~g~  238 (321)
                          ++  . ++.+.|.++ +.++++++++++||+ ++|++.+++..++.+. |.+++++.+.++++++|+.+   ++|+
T Consensus       174 ~~~p~~~I~~il~~~P~iL-~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~  252 (343)
T 3mva_O          174 HNDPADFVRKIIFKNPFIL-IQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC  252 (343)
T ss_dssp             CSCHHHHHHHHHHHCGGGG-GSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred             CCcHHHHHHHHHHhCChHh-cCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence                22  1 233345444 456999999999999 5999999999999886 58999999999999999987   6899


Q ss_pred             ChHHH----hhCCccccCCccCcchhHHHHHHHHHhCCCCCCC-cccccccccChhhHHHHH
Q 020786          239 EPLII----SKHPYLLLFSLEKRILPRCSVLQLLMSNKVITED-FSLTYMFKMTEKQFIERI  295 (321)
Q Consensus       239 ~~~~i----~~~P~~L~~sle~ri~pR~~~l~~L~~~g~~~~~-~~l~~~l~~s~~~F~~~~  295 (321)
                      +.+++    .++|.+|++|.++ |+++++++.   +.|+...+ ...+.++..|-++-..++
T Consensus       253 s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~---~mg~~~~~i~~~P~~l~~sleri~~R~  310 (343)
T 3mva_O          253 TEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLM---EENISISQIIENPRVLDSSISTLKSRI  310 (343)
T ss_dssp             CHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHH---TTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCchhcccHHH-HHHHHHHHH---HcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence            99876    6899999999995 999987764   46775432 345678888877766666

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2.1e-32  Score=246.03  Aligned_cols=191  Identities=13%  Similarity=0.232  Sum_probs=176.5

Q ss_pred             cccccc----ccCChH----HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCC
Q 020786            3 NKEHRV----LESDAY----ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP   74 (321)
Q Consensus         3 ~~~P~v----L~~~~~----~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P   74 (321)
                      +++|.+    |+++++    ++++||+++|+++++|++++.++|.+|.+++++ +.|+++||+++|++.++|++++.++|
T Consensus        23 ~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P  101 (270)
T 3m66_A           23 EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAP  101 (270)
T ss_dssp             TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            566666    998876    469999999999999999999999999999997 99999999999999999999999999


Q ss_pred             ccccccccccchhHHHHH-HHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHH-HHcCCChhhHHHhhhhCCcceeec
Q 020786           75 YILERSLENHIIPCIEIL-RRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPKSLVVKLMLIQPRTLLQS  152 (321)
Q Consensus        75 ~iL~~s~~~~l~~~v~~L-~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L-~~lG~~~~~i~~ll~~~P~il~~~  152 (321)
                      ++|++|+++ ++|+++|| .++|++.+++.+++.++|.+++.+.++ ++++++++ +++|++.+++.+++.++|++++++
T Consensus       102 ~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s  179 (270)
T 3m66_A          102 FLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMITRIPKMLTAN  179 (270)
T ss_dssp             TGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC
T ss_pred             HHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhheec
Confidence            999999985 99999999 589999999999999999999999885 99999976 679999999999999999999988


Q ss_pred             chhHHHHHHHHHHcCCCCCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhccCccccccHHHHhhHHHH
Q 020786          153 TARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDC  231 (321)
Q Consensus       153 ~~~~~~~v~~l~~lG~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~f  231 (321)
                      .                                  ++++++++||. ++|++.++|    .++|++|++|.+.|+++..|
T Consensus       180 ~----------------------------------~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sleri~pR~~~  221 (270)
T 3m66_A          180 K----------------------------------MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLFKVKERHLF  221 (270)
T ss_dssp             H----------------------------------HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHHHHHHHHHH
T ss_pred             H----------------------------------HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHHHHHHHHHH
Confidence            5                                  57888899996 799998876    58999999999999999999


Q ss_pred             HHH
Q 020786          232 YVN  234 (321)
Q Consensus       232 L~~  234 (321)
                      +..
T Consensus       222 l~~  224 (270)
T 3m66_A          222 LTY  224 (270)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.96  E-value=4.9e-28  Score=221.91  Aligned_cols=182  Identities=13%  Similarity=0.157  Sum_probs=165.2

Q ss_pred             CChHHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHH
Q 020786           11 SDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIE   90 (321)
Q Consensus        11 ~~~~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~   90 (321)
                      .+++.+++.|.++||++++|++++..+|.++..    ++.+++.||..+|++.++|+++|.++|++|+++++ +|+|+++
T Consensus        44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~  118 (335)
T 4fp9_B           44 LELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence            367788999999999999999999999998743    58899999999999999999999999999999986 6999999


Q ss_pred             HHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHH-HcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHcCCC
Q 020786           91 ILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFD  169 (321)
Q Consensus        91 ~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~-~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~lG~~  169 (321)
                      ||+++|++..++.+++.++|++|+++.++ +..++.+|. ++|++.+++..||.++|++|+++.                
T Consensus       119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~----------------  181 (335)
T 4fp9_B          119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL----------------  181 (335)
T ss_dssp             HHHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH----------------
T ss_pred             HHHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH----------------
Confidence            99999999999999999999999999885 889999996 699999999999999999999885                


Q ss_pred             CCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCC
Q 020786          170 PTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSM  238 (321)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~  238 (321)
                                        +++++|++||. +||++.++|.    + |++|+||.+.|+++..||.. +|.
T Consensus       182 ------------------e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          182 ------------------GQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             ------------------HHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             ------------------HHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence                              46888888887 8999888874    2 89999999999999999987 565

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.29  E-value=6.1e-11  Score=93.41  Aligned_cols=177  Identities=14%  Similarity=0.122  Sum_probs=130.6

Q ss_pred             hHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHHHHc
Q 020786           87 PCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKL  166 (321)
Q Consensus        87 ~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l~~l  166 (321)
                      ..+.-+.-+|++++-+.-++.+.|+++...+-. +..+-.+|+.+|+....+.+++--+|.++++..             
T Consensus        35 diisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrq-------------  100 (239)
T 4fzv_B           35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-------------  100 (239)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-------------
T ss_pred             HHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHH-------------
Confidence            334444555566666666666666666655543 555556666666666666666666666665553             


Q ss_pred             CCCCCchhHHHHHHHHhhcCHHHHHHHHHHHH-HcCCCHHHHHHHhhccCccccccHHHHhhHHHHHHHhcCCChHHHhh
Q 020786          167 GFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISK  245 (321)
Q Consensus       167 G~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l~-~lG~~~~~v~~~i~~~P~iL~~s~~~l~~k~~fL~~~~g~~~~~i~~  245 (321)
                                           ..+...+..|+ ++=|+..++.+++..||.++.-....+.-|+.|-.-.||+..-+|++
T Consensus       101 ---------------------qdindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk  159 (239)
T 4fzv_B          101 ---------------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK  159 (239)
T ss_dssp             ---------------------HHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH
T ss_pred             ---------------------hhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH
Confidence                                 35666677777 67799999999999999999999999999999988899999999987


Q ss_pred             CCccccCCccCcchhHHHHHHHHHh------CCCCC-CCcccccccccChhhHHHHHhhhcc
Q 020786          246 HPYLLLFSLEKRILPRCSVLQLLMS------NKVIT-EDFSLTYMFKMTEKQFIERIVKKYE  300 (321)
Q Consensus       246 ~P~~L~~sle~ri~pR~~~l~~L~~------~g~~~-~~~~l~~~l~~s~~~F~~~~~~~~~  300 (321)
                      . .+|.||+. .|+.||-+++.|..      +|-.. +++-+.+++..|+.+|..+-.+..-
T Consensus       160 s-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsv  219 (239)
T 4fzv_B          160 S-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSV  219 (239)
T ss_dssp             T-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCH
T ss_pred             H-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccH
Confidence            5 89999999 69999999988853      33321 2456889999999999999887753

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.58  E-value=8e-07  Score=70.02  Aligned_cols=119  Identities=12%  Similarity=0.157  Sum_probs=99.4

Q ss_pred             hhhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHH
Q 020786           49 MKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL  128 (321)
Q Consensus        49 l~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L  128 (321)
                      +...+.-+.-+|+.++-++-++.+.|.++...+. +++.+-.||+.+|+....+.+++..+|.++++.-. .+..++..|
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll  110 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL  110 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence            4445555566899999999999999999998865 68889999999999989999999999999999866 488899999


Q ss_pred             HH-cCCChhhHHHhhhhCCcceeecchhHHHHHHHH-HHcCCC
Q 020786          129 VN-HGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEV-KKLGFD  169 (321)
Q Consensus       129 ~~-lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l-~~lG~~  169 (321)
                      ++ +-++..++.+++.++|.++.-+...++-++.+. ..||+.
T Consensus       111 kekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgik  153 (239)
T 4fzv_B          111 KEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIK  153 (239)
T ss_dssp             HHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCC
T ss_pred             HHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCC
Confidence            76 889999999999999999988877777776664 356664

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=91.10  E-value=0.26  Score=31.85  Aligned_cols=35  Identities=9%  Similarity=0.218  Sum_probs=25.3

Q ss_pred             HhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhh
Q 020786           34 TVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS   72 (321)
Q Consensus        34 v~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~   72 (321)
                      +-.+|.+-...    +..+++||++-|++.++|...+.+
T Consensus        19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            45577775544    667888888888888888777765

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=89.39  E-value=0.87  Score=29.35  Aligned_cols=35  Identities=14%  Similarity=0.130  Sum_probs=19.5

Q ss_pred             HhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHh
Q 020786           70 LSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRA  108 (321)
Q Consensus        70 l~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~  108 (321)
                      +..+|.+-..+    +..+++||++-|+++++|..++.+
T Consensus        19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            34455555543    344566666666666666655554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=89.19  E-value=3.6  Score=31.10  Aligned_cols=98  Identities=11%  Similarity=0.114  Sum_probs=60.3

Q ss_pred             HHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHH------hcCCChhHHHHHHhhCCccccccccccchhH
Q 020786           15 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK------SLGFAELQMAKFLSSQPYILERSLENHIIPC   88 (321)
Q Consensus        15 ~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~------~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~   88 (321)
                      ..++-|.++||+...+.+.+..+-.        +....++||.      +.|++..++...+..+..--...  ..-...
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~   79 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQL   79 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHH
Confidence            4688888899998888888776521        3555666664      35677777766665432111000  011234


Q ss_pred             HHHHHHhhcCcHHHHHHHHhCCccccccchhhhhhHHHHHHH
Q 020786           89 IEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVN  130 (321)
Q Consensus        89 v~~L~~~g~~~~~v~~~l~~~P~lL~~s~~~~l~~~v~~L~~  130 (321)
                      +.-|.++|++.+.+.+++..+        +.++...++||..
T Consensus        80 v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~  113 (118)
T 4ae4_A           80 MSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHH
Confidence            677777888877777777764        2246667777753

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=88.53  E-value=0.59  Score=31.77  Aligned_cols=36  Identities=8%  Similarity=0.220  Sum_probs=27.1

Q ss_pred             HhhCCCccccCcccchhhhHHHHHhcCCChhHHHHHHhhC
Q 020786           34 TVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQ   73 (321)
Q Consensus        34 v~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~i~~il~~~   73 (321)
                      +-.+|.+-...    +..+++||++-|++.++|...+.+.
T Consensus        24 FLqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           24 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             HHCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HhCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            45677775544    6678888888888888888887764

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=84.09  E-value=12  Score=28.25  Aligned_cols=95  Identities=9%  Similarity=0.076  Sum_probs=54.8

Q ss_pred             hhhHHHHHhcCCChhHHHHHHhhCCccccccccccchhHHHHHHHh------hcCcHHHHHHHHhCCccccccch--hhh
Q 020786           50 KPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRV------LDTDENVLKAIRAGCLVLEYDIE--KVL  121 (321)
Q Consensus        50 ~~~v~~L~~lG~~~~~i~~il~~~P~iL~~s~~~~l~~~v~~L~~~------g~~~~~v~~~l~~~P~lL~~s~~--~~l  121 (321)
                      ...++-|.++|++...+.+.+..+-.        +....++||...      |.++.++-..+..+..    +..  ...
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~----~~~~~~~~   76 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQC----SEEKMMEF   76 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSS----CHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccC----CccccccC
Confidence            44567777888888888887655421        355566666543      3455555555554321    111  112


Q ss_pred             hhHHHHHHHcCCChhhHHHhhhhCCcceeecchhHHHHHHHH
Q 020786          122 EPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEV  163 (321)
Q Consensus       122 ~~~v~~L~~lG~~~~~i~~ll~~~P~il~~~~~~~~~~v~~l  163 (321)
                      ...+.-|.++||+.+.+.+.+..+.       ..+...++||
T Consensus        77 ~~~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL  111 (118)
T 4ae4_A           77 LQLMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDL  111 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHH
Confidence            3456777778888887777665542       3445555555

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=82.53  E-value=2.6  Score=28.57  Aligned_cols=36  Identities=14%  Similarity=0.136  Sum_probs=23.8

Q ss_pred             HhhCCccccccccccchhHHHHHHHhhcCcHHHHHHHHhC
Q 020786           70 LSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAG  109 (321)
Q Consensus        70 l~~~P~iL~~s~~~~l~~~v~~L~~~g~~~~~v~~~l~~~  109 (321)
                      +..+|.+-..+    +..+++||++-|++.++|..++.+.
T Consensus        24 FLqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           24 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             HHCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HhCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            45566666554    4457777777777777777777664

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=82.31  E-value=2.8  Score=38.35  Aligned_cols=36  Identities=6%  Similarity=0.076  Sum_probs=27.4

Q ss_pred             HHHHHHHhhCCCChHHHHHHHhhCCCccccCcccchhhhHHHHH
Q 020786           14 YATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK   57 (321)
Q Consensus        14 ~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~~L~   57 (321)
                      +..++-|.++||++.++.+.++..-        ++...-++||.
T Consensus       169 ~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~  204 (368)
T 1oqy_A          169 ETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLL  204 (368)
T ss_dssp             HHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence            3579999999999999999888553        24555667775

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00