Citrus Sinensis ID: 020792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MEEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVIDS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccHHccccccccccccccccccHHEEEEEEEHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEcHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHcHcEEEEEcHHHHHHcccccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meeglsssllkeksqvhgggssggesgsgsasaTSAVVLSTFVAVCGSYVfgsaigysspaqsgitndlGLSVAEYSLFGSILTIGAMIGAIMSGKIADyigrrgtmgfsDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIaeitpknlrggftTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIglcfipesprwlaktgkgieSEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQqfggvngiAFYASSIFisagfsgsIGMIAMVVIQVIDS
Flexible Loop (DISEMBL)
MEEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVIDS
Low Complexity Region (SEG)
MeeglsssllkeksQVHgggssggesgsgsasatsaVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGadadiseeaaeireYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNgiafyassifisagfsgsigmiaMVVIQVIDS
Disordered region (IsUnstruct)
***********************************AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGI**********************IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVI**
Disordered Region (DISOPRED)
*************************************VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAA******************ELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVIDS
Disordered Region (DISEMBL)
*********************************TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVIDS
Disordered Region (DISPRO)
*******************************SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVIDS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADxxxxxxxxxxxxxxxxxxxxxGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVIDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q3ECP7	470	Sugar transporter ERD6-li	yes	no	0.915	0.625	0.724	1e-116
P93051	463	Sugar transporter ERD6-li	no	no	0.881	0.611	0.618	1e-102
Q8LBI9	482	Sugar transporter ERD6-li	no	no	0.915	0.609	0.579	2e-94
Q94KE0	470	Sugar transporter ERD6-li	no	no	0.887	0.606	0.564	1e-89
O04036	496	Sugar transporter ERD6 OS	no	no	0.965	0.625	0.5	1e-87
Q94CI6	478	Sugar transporter ERD6-li	no	no	0.928	0.623	0.512	4e-86
Q94CI7	474	Sugar transporter ERD6-li	no	no	0.953	0.645	0.515	6e-85
Q0WQ63	470	Sugar transporter ERD6-li	no	no	0.919	0.627	0.520	1e-82
Q94AF9	467	Sugar transporter ERD6-li	no	no	0.937	0.644	0.481	3e-82
Q9LTP6	488	Putative sugar transporte	no	no	1.0	0.657	0.460	5e-82

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/294 (72%), Positives = 248/294 (84%)

Query: 25  ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
           E+   SA+ T+ ++L+TFVAV GS+VFGSAIGYSSP QS +T +L LSVAEYSLFGSILT
Sbjct: 20  ENQDSSATITTTLLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILT 79

Query: 85  IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
           IGAMIGA MSG+IAD IGRR TMGFS++ CI+GW+ I  SK A WLD+GR LVGYGMG+ 
Sbjct: 80  IGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVF 139

Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
           S+VVPVYIAEITPK LRGGFTTVHQL+IC+GVS+TYL+G+F+ WRILALIG IPC+VQ++
Sbjct: 140 SFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMM 199

Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
           GL  IPESPRWLAK GK  E E ALQRLRG  ADIS E+ EI++YT  L  LSEG I++L
Sbjct: 200 GLFVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDL 259

Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
           FQ +YA SL+VGVGLMVLQQFGGVNGIAFYASSIF SAG S  IGMIAMVV+Q+
Sbjct: 260 FQPQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQI 313

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/283 (61%), Positives = 217/283 (76%)

Query: 37  VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
           V LSTFVAVCGS+ FGS  GYSSPAQ+ I NDL L++AE+SLFGS+LT GAMIGAI SG 
Sbjct: 28  VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGP 87

Query: 97  IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
           IAD +GR+G M  S   C++GW+ I+F+K    LDLGRL  GYGMG  SYVVP++IAEI 
Sbjct: 88  IADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIA 147

Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
           PK  RG  TT++Q++IC GVS++++IG  + WR+LALIG IPC    +GL FIPESPRWL
Sbjct: 148 PKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWL 207

Query: 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276
           AK G+  E EAAL++LRG  ADISEEAAEI++Y ETLERL +  +L+LFQR+Y  S+++ 
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267

Query: 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVI 319
            GLMV QQFGG+NGI FY SSIF  AGF   +GMI   V+QV+
Sbjct: 268 FGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGMIIYAVLQVV 310

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2

 Score =  345 bits (885), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 171/295 (57%), Positives = 216/295 (73%), Gaps = 1/295 (0%)

Query: 25  ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
           E  S +  +   V+ STFVAVCGS+ FGS +GYS+P QS I  DL LS+AE+S+FGSILT
Sbjct: 32  EKESENNESYLMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILT 91

Query: 85  IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
           IGAM+GA+MSGKI+D+ GR+G M  S   CI GW+ + F+K A  LD+GR   GYG+G+ 
Sbjct: 92  IGAMLGAVMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVF 151

Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
           SYVVPVYIAEI+PKNLRGG TT++QLMI IG S+++LIG+ ++W+ LAL G  PC+V L 
Sbjct: 152 SYVVPVYIAEISPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLF 211

Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
           GLCFIPESPRWLAK G   E   ALQ+LRG DADI+ EA  I+   + LE L +  I +L
Sbjct: 212 GLCFIPESPRWLAKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDL 271

Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF-SGSIGMIAMVVIQV 318
             +KY  S+I+GV LMV QQF G+NGI FYAS  F+ AGF SG +G IA+  +QV
Sbjct: 272 VSKKYGRSVIIGVSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQV 326

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/285 (56%), Positives = 210/285 (73%)

Query: 34  TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIM 93
           T+ V+ STFV+VCGS+ FG A GYSS AQ+GI NDLGLSVA+YS+FGSI+T G MIGAI 
Sbjct: 29  TAVVLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIF 88

Query: 94  SGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153
           SGK+AD +GR+GTM F+ I CI GWV +  +K + WLD+GRL  G+ +GLLSYV+PVYIA
Sbjct: 89  SGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIA 148

Query: 154 EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESP 213
           EITPK++RG F   +QLM   G+S+ Y+IG F++WR LALIG IPC +Q++ L FIPESP
Sbjct: 149 EITPKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESP 208

Query: 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSL 273
           R L K G   E  A+LQ LRG DADISEEA  I+E     +   +  +++LFQR+YA S+
Sbjct: 209 RLLGKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSV 268

Query: 274 IVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
           ++GVGLM+LQQ  G +G+ +Y  S+F   GF  SIG + + VI +
Sbjct: 269 VIGVGLMLLQQLSGSSGLMYYVGSVFDKGGFPSSIGSMILAVIMI 313

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3

 Score =  323 bits (828), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/318 (50%), Positives = 216/318 (67%), Gaps = 8/318 (2%)

Query: 1   MEEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSP 60
           +E GLS    +E  +         ++  G    T++V LSTFVAV GS+  G  +G+SS 
Sbjct: 30  LESGLSRKSPREVKK--------PQNDDGECRVTASVFLSTFVAVSGSFCTGCGVGFSSG 81

Query: 61  AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
           AQ+GIT DL LSVAEYS+FGSILT+G +IGA+ SGK+AD +GR+ TM F +  CI GW+ 
Sbjct: 82  AQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLC 141

Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
           +  ++ A WLD GRLL+G G+G+ SYV+PVYIAEI PK++RG F   +QLM   G+S+ +
Sbjct: 142 VALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFF 201

Query: 181 LIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADIS 240
           +IG F+ WR+L ++G +PC+  +  L FIPESPRWLAK G+  E  ++LQRLRG+D DIS
Sbjct: 202 IIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQRLRGSDVDIS 261

Query: 241 EEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI 300
            EA  IR+  +  E   E  + ELFQR+YA+ LI+GVGLM LQQ  G +G+ +YASS+F 
Sbjct: 262 REANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGVTYYASSLFN 321

Query: 301 SAGFSGSIGMIAMVVIQV 318
             GF  +IG   +  I V
Sbjct: 322 KGGFPSAIGTSVIATIMV 339

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1

 Score =  318 bits (814), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/308 (51%), Positives = 215/308 (69%), Gaps = 10/308 (3%)

Query: 2   EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
           E  +   LL+ K+Q          +       T+ V+LSTF+AVCGS+ FG ++GY+S A
Sbjct: 10  ERSIEERLLQLKNQ----------NDDSECRITACVILSTFIAVCGSFSFGVSLGYTSGA 59

Query: 62  QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
           + GI  DL LS+A++S F S+ T+GA IGA+ SGK+A  +GRR TM  SD++CIIGW  I
Sbjct: 60  EIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSI 119

Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
            F+K   WL+ GR+  G G+GL+SYVVPVYIAEI+PK++RG FT  +QL+   G++M Y 
Sbjct: 120 AFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYF 179

Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
            G FLNWRILAL+G +PC +Q+IGL F+PESPRWLAK G   E E +L RLRG +ADIS 
Sbjct: 180 SGNFLNWRILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLLRLRGGNADISR 239

Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
           EA++I   T+ +E  S+    +LFQRKY ++L+VG+GLM++QQF G + +  YAS+I   
Sbjct: 240 EASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRK 299

Query: 302 AGFSGSIG 309
           AGFS +IG
Sbjct: 300 AGFSVTIG 307

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2

 Score =  314 bits (804), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 165/320 (51%), Positives = 218/320 (68%), Gaps = 14/320 (4%)

Query: 1   MEEGLS--SSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYS 58
           MEEG S    LL+ K++          +       T+ V+LSTFVAVCGS+ FG A GY+
Sbjct: 3   MEEGRSIEEGLLQLKNK----------NDDSECRITACVILSTFVAVCGSFSFGVATGYT 52

Query: 59  SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118
           S A++G+  DL LS+A++S FGS  T+GA IGA+  G +A  IGRRGTM  SD +CI GW
Sbjct: 53  SGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGTMWVSDFLCITGW 112

Query: 119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM 178
           + I F+K    L+ GR++ G G GL SYVVPVYIAEITPK++RG FT  +QL+   G++M
Sbjct: 113 LSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTFSNQLLQNAGLAM 172

Query: 179 TYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADAD 238
            Y  G F+ WR LAL+G +PC +Q+IGL F+PESPRWLAK G   E E +L RLRG DAD
Sbjct: 173 IYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLFRLRGRDAD 232

Query: 239 ISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI 298
           IS EA+EI+  T+ +E  S+    +LFQRKY ++L+VG+GLM++QQF G   +  YAS+I
Sbjct: 233 ISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFSGSAAVISYASTI 292

Query: 299 FISAGFSGSIG--MIAMVVI 316
           F  AGFS +IG  M+ + VI
Sbjct: 293 FRKAGFSVAIGTTMLGIFVI 312

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/296 (52%), Positives = 206/296 (69%), Gaps = 1/296 (0%)

Query: 25  ESGSG-SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSIL 83
           E+GS  S  A+  V LST +AVCGSY FG+ +GYS+P Q GI  +L LS +++S+FGSIL
Sbjct: 22  ENGSDVSEEASWMVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSIL 81

Query: 84  TIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL 143
            +GA++GAI SGKI+D+IGR+G M  S ++  IGW+II  +K    LD GR L GYG G 
Sbjct: 82  NMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGT 141

Query: 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQL 203
           LS+VVPV+IAEI+P+ LRG   T++QL I IG++  +LIGA +NWR LAL G  PC+V  
Sbjct: 142 LSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLF 201

Query: 204 IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263
            G  FIPESPRWL   G+  + E ALQ+LRG  A+I+ EA EI+EY  +L  L +  +++
Sbjct: 202 FGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMD 261

Query: 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVI 319
           L  +K    +IVGVGLM  QQF G+NG+ FYA  IF+SAG S ++G I   + QV+
Sbjct: 262 LIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVV 317

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2

 Score =  305 bits (781), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/301 (48%), Positives = 212/301 (70%)

Query: 9   LLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITND 68
           +++E+++    G    ++       T+ V+LSTFVAVC ++ +G A GY+S A++ I  +
Sbjct: 2   VVEEENRSMEEGLLQHQNDRDDRRITACVILSTFVAVCSAFSYGCAAGYTSGAETAIMKE 61

Query: 69  LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW 128
           L LS+A++S FGS L +G  +GA+ SG++A  +GRR T+   D  C+ GW+ I F+K  +
Sbjct: 62  LDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVF 121

Query: 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNW 188
           WLDLGR+ +G G+GL+SYVVPVYIAEITPK++RG FT  +QL+   GVS+ Y  G  +NW
Sbjct: 122 WLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINW 181

Query: 189 RILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE 248
           R++A+IG IPC++Q IG+ FIPESPRWLAK     E E++L RLRG D D+S EAAEI+ 
Sbjct: 182 RVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLHRLRGKDTDVSGEAAEIQV 241

Query: 249 YTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSI 308
            T+ LE  S+    ++FQ+KY  +L+VG+GLM++QQ  G +GI +Y+++IF  AGFS  +
Sbjct: 242 MTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERL 301

Query: 309 G 309
           G
Sbjct: 302 G 302

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTP6|EDL13_ARATH Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2

 Score =  304 bits (779), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 150/326 (46%), Positives = 226/326 (69%), Gaps = 5/326 (1%)

Query: 1   MEEGLSSSLLKEKSQVHGG-----GSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAI 55
           ++E + S  L +K ++        G      G      T  ++ +TF A+CG++ +G+A 
Sbjct: 12  IQEDIESVPLLQKVKIQEDIESVKGIRVNNDGEEDGPVTLILLFTTFTALCGTFSYGTAA 71

Query: 56  GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI 115
           G++SPAQ+GI   L LS+AE+S FG++LTIG ++GA MSGK+AD  GRRG +G S+  C+
Sbjct: 72  GFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSGKLADVFGRRGALGVSNSFCM 131

Query: 116 IGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIG 175
            GW++I FS+A W LD+GRL +G   G+ SYVVPVYI EI PK +RG F+ ++ L++C  
Sbjct: 132 AGWLMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEIAPKKVRGTFSAINSLVMCAS 191

Query: 176 VSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA 235
           V++TYL+G+ ++W+ LALI T+PC+ + +GL FIPESPRWL++ G+  ESE +LQRLRG 
Sbjct: 192 VAVTYLLGSVISWQKLALISTVPCVFEFVGLFFIPESPRWLSRNGRVKESEVSLQRLRGN 251

Query: 236 DADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYA 295
           + DI++EAAEI++Y + L+   E G  +LF  +Y+  + VG+GL+VLQQ GG++G  FY 
Sbjct: 252 NTDITKEAAEIKKYMDNLQEFKEDGFFDLFNPRYSRVVTVGIGLLVLQQLGGLSGYTFYL 311

Query: 296 SSIFISAGFSGSIGMIAMVVIQVIDS 321
           SSIF  +GF  ++G++   V+Q + S
Sbjct: 312 SSIFKKSGFPNNVGVMMASVVQSVTS 337

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
224125374	442	predicted protein [Populus trichocarpa]	0.878	0.638	0.847	1e-134
255542520	488	sugar transporter, putative [Ricinus com	0.890	0.586	0.814	1e-129
298205031	517	unnamed protein product [Vitis vinifera]	0.990	0.615	0.708	1e-126
225451069	488	PREDICTED: putative ERD6-like transporte	0.990	0.651	0.708	1e-126
449485745	479	PREDICTED: sugar transporter ERD6-like 5	0.978	0.655	0.665	1e-121
449435707	479	PREDICTED: sugar transporter ERD6-like 5	0.978	0.655	0.665	1e-121
356504068	486	PREDICTED: sugar transporter ERD6-like 5	0.975	0.644	0.690	1e-119
356571138	469	PREDICTED: LOW QUALITY PROTEIN: sugar tr	0.894	0.611	0.738	1e-118
124361039	481	General substrate transporter; Sugar tra	0.903	0.602	0.713	1e-117
297853442	470	hypothetical protein ARALYDRAFT_474748 [	0.915	0.625	0.727	1e-116

>gi|224125374|ref|XP_002319570.1| predicted protein [Populus trichocarpa] gi|222857946|gb|EEE95493.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/282 (84%), Positives = 262/282 (92%)

Query: 37  VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
           VVLST VAV GSYVFGSAIGYSSP QSGI  DLGLSVAEYSLFGSILTIGAMIGAIMSG+
Sbjct: 2   VVLSTLVAVSGSYVFGSAIGYSSPTQSGIMEDLGLSVAEYSLFGSILTIGAMIGAIMSGR 61

Query: 97  IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
           IADYIGRRGTMGFS+I+CIIGW++I FSKA+WWLD+GRLLVGYGMGLLSYV+P+YIAEIT
Sbjct: 62  IADYIGRRGTMGFSEIICIIGWMLITFSKASWWLDVGRLLVGYGMGLLSYVIPIYIAEIT 121

Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
           PKNLRGGFTTVHQLMIC GVS+TYLIGAF++WR LALIGTIPC+VQ++GL FIPESPRWL
Sbjct: 122 PKNLRGGFTTVHQLMICCGVSITYLIGAFMSWRSLALIGTIPCIVQIVGLFFIPESPRWL 181

Query: 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276
           AK G+G E E ALQ LRG +ADIS+EAAEIR+YTET+ +LSE  I ELFQ KYAHSLIVG
Sbjct: 182 AKIGQGKECEVALQCLRGHNADISDEAAEIRDYTETILQLSEASIFELFQWKYAHSLIVG 241

Query: 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
           VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVV+Q+
Sbjct: 242 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVVQI 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542520|ref|XP_002512323.1| sugar transporter, putative [Ricinus communis] gi|223548284|gb|EEF49775.1| sugar transporter, putative [Ricinus communis]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/286 (81%), Positives = 254/286 (88%)

Query: 33  ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAI 92
           AT  VV+ST +AV GSYVFGSA+GYSSP QSGI  DL LSVAEYSLFGSILTIGAMIGAI
Sbjct: 44  ATLVVVMSTLIAVSGSYVFGSAVGYSSPTQSGIMQDLDLSVAEYSLFGSILTIGAMIGAI 103

Query: 93  MSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI 152
           MSG+IADYIGRRGTMGFS+I CIIGW+ I FSK + WLD+GRLLVGYGMGLLSYVVPVYI
Sbjct: 104 MSGRIADYIGRRGTMGFSEIFCIIGWLAIAFSKVSLWLDVGRLLVGYGMGLLSYVVPVYI 163

Query: 153 AEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPES 212
           AEITPKNLRGGFTTVHQ MIC GVS+TYLIGAF++WR LALIGTIPCL+QL+GL  IPES
Sbjct: 164 AEITPKNLRGGFTTVHQFMICCGVSVTYLIGAFISWRTLALIGTIPCLIQLLGLFLIPES 223

Query: 213 PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS 272
           PRWLAK G+  E EAALQRLRG + DIS EAA+IR+YTE L++ SE  I ELFQ KYAHS
Sbjct: 224 PRWLAKIGRLKECEAALQRLRGGNTDISGEAADIRDYTEFLQQHSEASIFELFQWKYAHS 283

Query: 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
           LIVGVGLMVLQQFGGVNG+AFYASSIFISAGFSGSIG IAMVV+QV
Sbjct: 284 LIVGVGLMVLQQFGGVNGVAFYASSIFISAGFSGSIGTIAMVVVQV 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205031|emb|CBI34338.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/319 (70%), Positives = 268/319 (84%), Gaps = 1/319 (0%)

Query: 1   MEEG-LSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSS 59
           +EEG LSS L+        G S  G    G +SATS +VLST +AVCGSYVFG+A+GYSS
Sbjct: 35  IEEGQLSSPLIVADKPCENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGTAVGYSS 94

Query: 60  PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV 119
           PA+SGI ++LGLS+AEYSLFGSILTIGAM+GAI+SG+IAD IGRRG MGFS++ CI+GW+
Sbjct: 95  PAESGIMDELGLSLAEYSLFGSILTIGAMLGAIVSGRIADLIGRRGAMGFSEVFCIMGWL 154

Query: 120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179
            +VFSK AWWLD GRL +G GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC G S+T
Sbjct: 155 AVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICCGSSIT 214

Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI 239
           +L+G  +NWRILALIGTIPCL+Q++GL FIPESPRWLA++G+  + E ALQRLRG  A I
Sbjct: 215 FLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARSGRWQDCEDALQRLRGEGAII 274

Query: 240 SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299
           S+EAAEI++Y+ETL+RLSE  IL+LFQ  YA SLIVGVGLMVLQQFGGVN I FYAS+IF
Sbjct: 275 SQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGLMVLQQFGGVNAIVFYASAIF 334

Query: 300 ISAGFSGSIGMIAMVVIQV 318
           +SAGFSG +G IAMV +Q+
Sbjct: 335 VSAGFSGRVGSIAMVAVQI 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451069|ref|XP_002263418.1| PREDICTED: putative ERD6-like transporter [Vitis vinifera] gi|310877850|gb|ADP37156.1| putative ERD6-like transporter [Vitis vinifera]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/319 (70%), Positives = 268/319 (84%), Gaps = 1/319 (0%)

Query: 1   MEEG-LSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSS 59
           +EEG LSS L+        G S  G    G +SATS +VLST +AVCGSYVFG+A+GYSS
Sbjct: 6   IEEGQLSSPLIVADKPCENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGTAVGYSS 65

Query: 60  PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV 119
           PA+SGI ++LGLS+AEYSLFGSILTIGAM+GAI+SG+IAD IGRRG MGFS++ CI+GW+
Sbjct: 66  PAESGIMDELGLSLAEYSLFGSILTIGAMLGAIVSGRIADLIGRRGAMGFSEVFCIMGWL 125

Query: 120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179
            +VFSK AWWLD GRL +G GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC G S+T
Sbjct: 126 AVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICCGSSIT 185

Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI 239
           +L+G  +NWRILALIGTIPCL+Q++GL FIPESPRWLA++G+  + E ALQRLRG  A I
Sbjct: 186 FLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARSGRWQDCEDALQRLRGEGAII 245

Query: 240 SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299
           S+EAAEI++Y+ETL+RLSE  IL+LFQ  YA SLIVGVGLMVLQQFGGVN I FYAS+IF
Sbjct: 246 SQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGLMVLQQFGGVNAIVFYASAIF 305

Query: 300 ISAGFSGSIGMIAMVVIQV 318
           +SAGFSG +G IAMV +Q+
Sbjct: 306 VSAGFSGRVGSIAMVAVQI 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485745|ref|XP_004157263.1| PREDICTED: sugar transporter ERD6-like 5-like [Cucumis sativus]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/317 (66%), Positives = 260/317 (82%), Gaps = 3/317 (0%)

Query: 2   EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
           E G    L++  +    GGSSGG +   + SAT +++ ST VAV GSYVFG+AIGYSSP+
Sbjct: 7   ETGQLCPLIETHNHDFHGGSSGGRA---TGSATFSLIFSTLVAVSGSYVFGTAIGYSSPS 63

Query: 62  QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
           ++GI  DL L+V+EYS FGSILTIGAMIGAI+SGK+ADYIGRRGTMGF++I C++GW +I
Sbjct: 64  EAGIMTDLDLTVSEYSFFGSILTIGAMIGAIVSGKLADYIGRRGTMGFAEIFCLLGWFLI 123

Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
            FSKA WWLD+GR+LVG+GMG++SYVVPV+IAEITPK LRG FTTVHQLMIC GVS+T+L
Sbjct: 124 AFSKAVWWLDIGRILVGFGMGVISYVVPVFIAEITPKELRGAFTTVHQLMICFGVSLTWL 183

Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
           IGAF+NWR LALIG IP ++QL+GL F PESPRWL K G+G++ E ALQRLRG   DIS 
Sbjct: 184 IGAFVNWRTLALIGAIPSVIQLVGLPFTPESPRWLTKNGQGLDCEDALQRLRGKTKDIST 243

Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
           E  EI+EYTE L++L E  +L+LFQR+YA SL VG+GLMVLQQFGGVNGIAFY +S+F S
Sbjct: 244 EVLEIQEYTELLKQLPEPSVLDLFQRQYARSLFVGLGLMVLQQFGGVNGIAFYVTSLFTS 303

Query: 302 AGFSGSIGMIAMVVIQV 318
           AGFSG+IG IA+  +Q+
Sbjct: 304 AGFSGNIGTIALASVQI 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435707|ref|XP_004135636.1| PREDICTED: sugar transporter ERD6-like 5-like [Cucumis sativus]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/317 (66%), Positives = 260/317 (82%), Gaps = 3/317 (0%)

Query: 2   EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
           E G    L++  +    GGSSGG +   + SAT +++ ST VAV GSYVFG+AIGYSSP+
Sbjct: 7   ETGQLCPLIETHNHDFHGGSSGGRA---TGSATFSLIFSTLVAVSGSYVFGTAIGYSSPS 63

Query: 62  QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
           ++GI  DL L+V+EYS FGSILTIGAMIGAI+SGK+ADYIGRRGTMGF++I C++GW +I
Sbjct: 64  EAGIMTDLDLTVSEYSFFGSILTIGAMIGAIVSGKLADYIGRRGTMGFAEIFCLLGWFLI 123

Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
            FSKA WWLD+GR+LVG+GMG++SYVVPV+IAEITPK LRG FTTVHQLMIC GVS+T+L
Sbjct: 124 AFSKAVWWLDIGRILVGFGMGVISYVVPVFIAEITPKELRGAFTTVHQLMICFGVSLTWL 183

Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
           IGAF+NWR LALIG IP ++QL+GL F PESPRWL K G+G++ E ALQRLRG   DIS 
Sbjct: 184 IGAFVNWRTLALIGAIPSVIQLVGLPFTPESPRWLTKNGQGLDCEDALQRLRGKTKDIST 243

Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
           E  EI+EYTE L++L E  +L+LFQR+YA SL VG+GLMVLQQFGGVNGIAFY +S+F S
Sbjct: 244 EVLEIQEYTELLKQLPEPSVLDLFQRQYARSLFVGLGLMVLQQFGGVNGIAFYVTSLFTS 303

Query: 302 AGFSGSIGMIAMVVIQV 318
           AGFSG+IG IA+  +Q+
Sbjct: 304 AGFSGNIGTIALASVQI 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504068|ref|XP_003520821.1| PREDICTED: sugar transporter ERD6-like 5-like [Glycine max]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/317 (69%), Positives = 257/317 (81%), Gaps = 4/317 (1%)

Query: 5   LSSSLLKEKSQVHGGGSSGG---ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
            SS LL   +Q +GG        +    + S    ++L+T VAV GSYVFGSA+GYSSPA
Sbjct: 12  FSSPLLPIGAQGYGGNHGNDYEEKRQKETWSVPPILILTTLVAVSGSYVFGSAVGYSSPA 71

Query: 62  QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
           Q+GI +DL + VAEYSLFGSILTIGAMIGAI+SG+IADY GRR  MGFS++ CI+GW+ I
Sbjct: 72  QTGIMDDLNVGVAEYSLFGSILTIGAMIGAIISGRIADYAGRRTAMGFSEVFCILGWLAI 131

Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
            F+K  WWL +GRL VG GMGLLSYVVP+YIAEITPKNLRGGFTTVHQLMIC GVS+TYL
Sbjct: 132 AFAKVGWWLYVGRLFVGCGMGLLSYVVPIYIAEITPKNLRGGFTTVHQLMICCGVSLTYL 191

Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
           +GAFLNWRILAL+G IPC+VQL+GL FIPESPRWLAK G    SE+ LQRLRG +AD+S+
Sbjct: 192 VGAFLNWRILALLGIIPCIVQLLGLFFIPESPRWLAKFGHWERSESVLQRLRGKNADVSQ 251

Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
           EA EIR++TE L+R +E  I+ LFQ +Y  SL VGVGLM+LQQFGGVNGIAFYASSIFIS
Sbjct: 252 EATEIRDFTEALQRETE-SIIGLFQLQYLKSLTVGVGLMILQQFGGVNGIAFYASSIFIS 310

Query: 302 AGFSGSIGMIAMVVIQV 318
           AGFSGSIGMIAMV +Q+
Sbjct: 311 AGFSGSIGMIAMVAVQI 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571138|ref|XP_003553737.1| PREDICTED: LOW QUALITY PROTEIN: sugar transporter ERD6-like 5-like [Glycine max]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/287 (73%), Positives = 244/287 (85%)

Query: 32  SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGA 91
           S  + ++L+T VAV GSYVFGSA+GYSSPAQ+GI +DL L VA+YSLFGSILTIGAMIGA
Sbjct: 10  SVPAILILTTLVAVSGSYVFGSAVGYSSPAQTGIMDDLNLGVAKYSLFGSILTIGAMIGA 69

Query: 92  IMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVY 151
           I+SG+IADY GRR  MGFS++ CI+GW++I FSK  WWL +GRLLVGYGMGLLSYVVPVY
Sbjct: 70  IISGRIADYAGRRTAMGFSEVFCILGWLVIAFSKVGWWLYIGRLLVGYGMGLLSYVVPVY 129

Query: 152 IAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPE 211
           IAEITPKNLRGGFTTVHQLMIC GVS+TYLIGAFLNWRILALIG IPCLVQL+GL FIPE
Sbjct: 130 IAEITPKNLRGGFTTVHQLMICCGVSLTYLIGAFLNWRILALIGIIPCLVQLLGLFFIPE 189

Query: 212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAH 271
           SPRWL   G    +E+ LQ LRG +ADIS+EA EI ++TE L++ +E  I+ LFQ +Y  
Sbjct: 190 SPRWLGNYGHWERNESVLQCLRGKNADISQEATEIGDFTEALQKETEASIIGLFQLQYLK 249

Query: 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
           SL VGVGLM+LQQFGGVN IAF ASSIFISAGFSGSIGMIAMV +Q+
Sbjct: 250 SLTVGVGLMILQQFGGVNDIAFCASSIFISAGFSGSIGMIAMVAVQI 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124361039|gb|ABN09011.1| General substrate transporter; Sugar transporter superfamily [Medicago truncatula]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/290 (71%), Positives = 242/290 (83%)

Query: 29  GSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAM 88
            S+  TS ++L+T  AV GSYVFGSA+GYSSPAQSGIT+DL L VAEYSLFGSILTIGAM
Sbjct: 19  ASSVPTSILILTTLAAVSGSYVFGSAVGYSSPAQSGITDDLNLGVAEYSLFGSILTIGAM 78

Query: 89  IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVV 148
           +GAI+SG +ADY GRR  MGFS++ CI+GW+ I  SK AWWL +GRLL+G GMG+LSYVV
Sbjct: 79  VGAIVSGSLADYAGRRAAMGFSELFCILGWLAIAVSKVAWWLYVGRLLLGCGMGILSYVV 138

Query: 149 PVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCF 208
           P+YIAEITPK+LRGGFT VHQLMIC GVS+TYLIGAFLNWR+LA+IGTIPCL QL+ L F
Sbjct: 139 PIYIAEITPKDLRGGFTAVHQLMICFGVSLTYLIGAFLNWRLLAIIGTIPCLAQLLSLSF 198

Query: 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK 268
           IPESPRWLAK G+   SE+ LQ LRG + DISEEA EIRE+TE  ++ +E  I  LFQ +
Sbjct: 199 IPESPRWLAKVGRLERSESTLQHLRGKNVDISEEATEIREFTEASQQQTEANIFGLFQLQ 258

Query: 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
           Y  SL VGVGL++LQQFGGVN IAFYASSIF+SAGFS SIG IAMVV+Q+
Sbjct: 259 YLKSLTVGVGLIILQQFGGVNAIAFYASSIFVSAGFSRSIGTIAMVVVQI 308

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853442|ref|XP_002894602.1| hypothetical protein ARALYDRAFT_474748 [Arabidopsis lyrata subsp. lyrata] gi|297340444|gb|EFH70861.1| hypothetical protein ARALYDRAFT_474748 [Arabidopsis lyrata subsp. lyrata]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/294 (72%), Positives = 250/294 (85%)

Query: 25  ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
           E+   SA+ T+ ++L+TFVAV GS+VFGSAIGYSSP QS +T DL LSVAEYSLFGSILT
Sbjct: 20  ENQDSSATTTTTLLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKDLNLSVAEYSLFGSILT 79

Query: 85  IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
           IGAMIGA MSG+IAD IGRR TMGFS++ CI+GW+ I  SK A WLD+GR LVGYGMG+L
Sbjct: 80  IGAMIGAAMSGRIADLIGRRATMGFSEMFCILGWLTIYLSKVAVWLDVGRFLVGYGMGVL 139

Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
           S+VVPVYIAEITPK+LRGGFTTVHQLMIC+GVS+ YL+G+F+ WRILALIG +PC++Q++
Sbjct: 140 SFVVPVYIAEITPKDLRGGFTTVHQLMICLGVSVAYLLGSFIGWRILALIGLVPCVIQMM 199

Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
           GL  IPESPRWLAK G+  E E ALQRLRG  ADIS E+ EI++YT+ L  LSEG IL+L
Sbjct: 200 GLFIIPESPRWLAKVGRWEEFEIALQRLRGESADISYESNEIKDYTQRLTNLSEGSILDL 259

Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
           FQ KYA SL VGVGLMVLQQFGGVNGIAFY+SSIF SAGFS  IGMIAMVV+Q+
Sbjct: 260 FQPKYAKSLFVGVGLMVLQQFGGVNGIAFYSSSIFESAGFSSKIGMIAMVVVQI 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2199539	470	AT1G54730 [Arabidopsis thalian	0.878	0.6	0.648	1.3e-93
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.788	0.546	0.584	1.6e-79
TAIR|locus:2144975	482	AT5G18840 "AT5G18840" [Arabido	0.788	0.524	0.573	7.3e-75
TAIR|locus:2146365	478	SFP2 [Arabidopsis thaliana (ta	0.781	0.525	0.537	1.3e-70
TAIR|locus:2092379	488	AT3G20460 [Arabidopsis thalian	0.788	0.518	0.486	3e-69
TAIR|locus:2146350	474	SFP1 [Arabidopsis thaliana (ta	0.781	0.529	0.529	3.5e-68
TAIR|locus:2036084	496	ERD6 "EARLY RESPONSE TO DEHYDR	0.781	0.506	0.525	7.2e-68
TAIR|locus:505006329	467	AT3G05165 [Arabidopsis thalian	0.788	0.541	0.490	2.8e-66
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.788	0.538	0.505	6.7e-65
TAIR|locus:2036039	464	AT1G08890 [Arabidopsis thalian	0.781	0.540	0.525	1.4e-64

TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 183/282 (64%), Positives = 212/282 (75%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             ++L+TFVAV GS+VFGSAIGYSSP QS +T +L LSVAEYSLFGSILTIGAMIGA MSG+
Sbjct:    32 LLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGR 91

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             IAD IGRR TMGFS++ CI+GW+ I  SK A WLD+GR LVGYGMG+ S+VVPVYIAEIT
Sbjct:    92 IADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEIT 151

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK LRGGFTTVHQL+IC+GVS+TYL+G+F+ WRILALIG IPC+VQ++GL  IPESPRWL
Sbjct:   152 PKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWL 211

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             AK GK  E E ALQRLRG              YT  L  LSEG I++LFQ +YA SL+VG
Sbjct:   212 AKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVG 271

Query:   277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQV 318
             VGLMVLQQFGGVN                       MVV+Q+
Sbjct:   272 VGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQI 313

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 148/253 (58%), Positives = 185/253 (73%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             V LSTFVAVCGS+ FGS  GYSSPAQ+ I NDL L++AE+SLFGS+LT GAMIGAI SG 
Sbjct:    28 VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGP 87

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             IAD +GR+G M  S   C++GW+ I+F+K    LDLGRL  GYGMG  SYVVP++IAEI 
Sbjct:    88 IADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIA 147

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK  RG  TT++Q++IC GVS++++IG  + WR+LALIG IPC    +GL FIPESPRWL
Sbjct:   148 PKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWL 207

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             AK G+  E EAAL++LRG              Y ETLERL +  +L+LFQR+Y  S+++ 
Sbjct:   208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267

Query:   277 VGLMVLQQFGGVN 289
              GLMV QQFGG+N
Sbjct:   268 FGLMVFQQFGGIN 280

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 145/253 (57%), Positives = 182/253 (71%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             V+ STFVAVCGS+ FGS +GYS+P QS I  DL LS+AE+S+FGSILTIGAM+GA+MSGK
Sbjct:    44 VLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGK 103

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             I+D+ GR+G M  S   CI GW+ + F+K A  LD+GR   GYG+G+ SYVVPVYIAEI+
Sbjct:   104 ISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEIS 163

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PKNLRGG TT++QLMI IG S+++LIG+ ++W+ LAL G  PC+V L GLCFIPESPRWL
Sbjct:   164 PKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWL 223

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             AK G   E   ALQ+LRG                + LE L +  I +L  +KY  S+I+G
Sbjct:   224 AKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIG 283

Query:   277 VGLMVLQQFGGVN 289
             V LMV QQF G+N
Sbjct:   284 VSLMVFQQFVGIN 296

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 135/251 (53%), Positives = 180/251 (71%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             V+LSTF+AVCGS+ FG ++GY+S A+ GI  DL LS+A++S F S+ T+GA IGA+ SGK
Sbjct:    35 VILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGK 94

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             +A  +GRR TM  SD++CIIGW  I F+K   WL+ GR+  G G+GL+SYVVPVYIAEI+
Sbjct:    95 MAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEIS 154

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK++RG FT  +QL+   G++M Y  G FLNWRILAL+G +PC +Q+IGL F+PESPRWL
Sbjct:   155 PKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWL 214

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             AK G   E E +L RLRG               T+ +E  S+    +LFQRKY ++L+VG
Sbjct:   215 AKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVG 274

Query:   277 VGLMVLQQFGG 287
             +GLM++QQF G
Sbjct:   275 IGLMLIQQFSG 285

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 123/253 (48%), Positives = 181/253 (71%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             ++ +TF A+CG++ +G+A G++SPAQ+GI   L LS+AE+S FG++LTIG ++GA MSGK
Sbjct:    53 LLFTTFTALCGTFSYGTAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSGK 112

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             +AD  GRRG +G S+  C+ GW++I FS+A W LD+GRL +G   G+ SYVVPVYI EI 
Sbjct:   113 LADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEIA 172

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK +RG F+ ++ L++C  V++TYL+G+ ++W+ LALI T+PC+ + +GL FIPESPRWL
Sbjct:   173 PKKVRGTFSAINSLVMCASVAVTYLLGSVISWQKLALISTVPCVFEFVGLFFIPESPRWL 232

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             ++ G+  ESE +LQRLRG              Y + L+   E G  +LF  +Y+  + VG
Sbjct:   233 SRNGRVKESEVSLQRLRGNNTDITKEAAEIKKYMDNLQEFKEDGFFDLFNPRYSRVVTVG 292

Query:   277 VGLMVLQQFGGVN 289
             +GL+VLQQ GG++
Sbjct:   293 IGLLVLQQLGGLS 305

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 133/251 (52%), Positives = 174/251 (69%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             V+LSTFVAVCGS+ FG A GY+S A++G+  DL LS+A++S FGS  T+GA IGA+  G 
Sbjct:    31 VILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGN 90

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             +A  IGRRGTM  SD +CI GW+ I F+K    L+ GR++ G G GL SYVVPVYIAEIT
Sbjct:    91 LAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEIT 150

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK++RG FT  +QL+   G++M Y  G F+ WR LAL+G +PC +Q+IGL F+PESPRWL
Sbjct:   151 PKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWL 210

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             AK G   E E +L RLRG               T+ +E  S+    +LFQRKY ++L+VG
Sbjct:   211 AKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVG 270

Query:   277 VGLMVLQQFGG 287
             +GLM++QQF G
Sbjct:   271 IGLMLIQQFSG 281

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 132/251 (52%), Positives = 174/251 (69%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             V LSTFVAV GS+  G  +G+SS AQ+GIT DL LSVAEYS+FGSILT+G +IGA+ SGK
Sbjct:    58 VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGK 117

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             +AD +GR+ TM F +  CI GW+ +  ++ A WLD GRLL+G G+G+ SYV+PVYIAEI 
Sbjct:   118 VADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIA 177

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK++RG F   +QLM   G+S+ ++IG F+ WR+L ++G +PC+  +  L FIPESPRWL
Sbjct:   178 PKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWL 237

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             AK G+  E  ++LQRLRG                +  E   E  + ELFQR+YA+ LI+G
Sbjct:   238 AKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIG 297

Query:   277 VGLMVLQQFGG 287
             VGLM LQQ  G
Sbjct:   298 VGLMFLQQLCG 308

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 124/253 (49%), Positives = 175/253 (69%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             V+LSTFVAVC ++ +G A GY+S A++ I  +L LS+A++S FGS L +G  +GA+ SG+
Sbjct:    30 VILSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQ 89

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             +A  +GRR T+   D  C+ GW+ I F+K  +WLDLGR+ +G G+GL+SYVVPVYIAEIT
Sbjct:    90 LAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEIT 149

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK++RG FT  +QL+   GVS+ Y  G  +NWR++A+IG IPC++Q IG+ FIPESPRWL
Sbjct:   150 PKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWL 209

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             AK     E E++L RLRG               T+ LE  S+    ++FQ+KY  +L+VG
Sbjct:   210 AKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVG 269

Query:   277 VGLMVLQQFGGVN 289
             +GLM++QQ  G +
Sbjct:   270 IGLMLIQQLSGAS 282

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 128/253 (50%), Positives = 169/253 (66%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             V LST +AVCGSY FG+ +GYS+P Q GI  +L LS +++S+FGSIL +GA++GAI SGK
Sbjct:    35 VYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGK 94

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             I+D+IGR+G M  S ++  IGW+II  +K    LD GR L GYG G LS+VVPV+IAEI+
Sbjct:    95 ISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEIS 154

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             P+ LRG   T++QL I IG++  +LIGA +NWR LAL G  PC+V   G  FIPESPRWL
Sbjct:   155 PRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWL 214

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
                G+  + E ALQ+LRG              Y  +L  L +  +++L  +K    +IVG
Sbjct:   215 EMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVG 274

Query:   277 VGLMVLQQFGGVN 289
             VGLM  QQF G+N
Sbjct:   275 VGLMFFQQFVGIN 287

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 132/251 (52%), Positives = 170/251 (67%)

Query:    37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
             ++LST VAV GS+V+G A+ YSSPAQS I  +LGLSVA+YS F S++T+G MI A  SGK
Sbjct:    27 LLLSTSVAVTGSFVYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAAFSGK 86

Query:    97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
             IA  IGRR TM  +D+ CI GW+ + F+     L++GR  +G+G+GL+SYVVPVYIAEIT
Sbjct:    87 IAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNIGRGFLGFGVGLISYVVPVYIAEIT 146

Query:   157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
             PK  RGGF+  +QL+   G+S+ +  G F +WR LAL+  IPC +Q+I L FIPESPRWL
Sbjct:   147 PKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFFIPESPRWL 206

Query:   217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
             A  G+  E E  L+RLRG                ET  R S  G+ +LF  K AH LI+G
Sbjct:   207 AMYGRERELEVTLKRLRGENGDILEEAAEIRETVETSRRESRSGLKDLFNMKNAHPLIIG 266

Query:   277 VGLMVLQQFGG 287
             +GLM+LQQF G
Sbjct:   267 LGLMLLQQFCG 277

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ECP7	ERDL5_ARATH	No assigned EC number	0.7244	0.9158	0.6255	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-55
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-42
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-27
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-19
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-16
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-14
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-12
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-10
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	5e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-06
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-05
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	4e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-05
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	4e-04
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	0.002
COG2807	395	COG2807, CynX, Cyanate permease [Inorganic ion tra	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  184 bits (470), Expect = 5e-55
 Identities = 93/296 (31%), Positives = 151/296 (51%), Gaps = 20/296 (6%)

Query: 41  TFVAVCGSYVFGSAIGYSSPAQSGI-----------TNDLGLSVAEYSLFGSILTIGAMI 89
             VA  G ++FG   G      + I                 S     L  SI ++G +I
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 90  GAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGYGMGLLSYV 147
           G++ +GK+ D  GR+ ++   +++ +IG ++  F+K    + L +GR++VG G+G +S +
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 148 VPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN-------WRILALIGTIPCL 200
           VP+YI+EI PK LRG   +++QL I  G+ +  +IG  LN       WRI   +  +P +
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 201 VQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG 260
           + LIGL F+PESPRWL   GK  E+ A L +LRG      E   E      ++E      
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 261 ILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVI 316
           +     +     L++GV L + QQ  G+N I +Y+ +IF + G S S+ +  +V +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGV 297

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  153 bits (388), Expect = 1e-42
 Identities = 87/271 (32%), Positives = 140/271 (51%), Gaps = 15/271 (5%)

Query: 64  GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123
              N    S + + L  SI  +G  IGA+ +G ++D  GR+ ++    ++ +IG +++  
Sbjct: 61  TSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL 120

Query: 124 SKAAW---WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
           +  A     L +GR+L+G G+G+ S +VP+Y++EI PK LRG  T+++QL I  G+ + Y
Sbjct: 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180

Query: 181 LIGAF-------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLR 233
             G+        L WRI   +  IP  +  +GL F+PESPRWL   G+  E+  +L RLR
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR 240

Query: 234 GADADISEEAAE-----IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288
           G   +  E   E     I+   E        G L    R+    L +GV L   QQF G+
Sbjct: 241 GTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGI 300

Query: 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQVI 319
           N I +Y+ +IF +AG S     +  +++  +
Sbjct: 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAV 331

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  110 bits (278), Expect = 2e-27
 Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 36/263 (13%)

Query: 85  IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV------IIVFSKA------AWWLDL 132
           IG +IG  + G  ++  GRR ++  + ++  I  +          S             +
Sbjct: 66  IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125

Query: 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------- 185
            R++ G G+GL S + P+YIAEI P ++RG   + +Q  I  G  + Y +  F       
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA 185

Query: 186 -----LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRG---ADA 237
                  WR +     IP L+ L+ L F+PE+PR+L   GK  ++E  L+++ G   A  
Sbjct: 186 SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245

Query: 238 DISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASS 297
            + E    +    +T  +L   G+           +++GV L V QQF G+N + +YA  
Sbjct: 246 ALQEIKHSLDHGRKTGGKLLMFGVG---------VIVIGVMLSVFQQFVGINVVLYYAPE 296

Query: 298 IFISAGFSGSIGMIAMVVIQVID 320
           IF + G S  I ++  +++ VI+
Sbjct: 297 IFKTLGASTDIALLQTIIVGVIN 319

Length = 479

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 87.0 bits (216), Expect = 6e-19
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 10/194 (5%)

Query: 78  LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137
           L  S   +G ++G+ + G ++D  GR+  +  S +V  +  V+  FS       + RLLV
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190

Query: 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILA 192
           G G+G +     V   E  PK  R         +I +  S+  ++   +     +WR L 
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIV----GTLIQVFFSLGLVLLPLVAYFIPDWRWLQ 246

Query: 193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGAD-ADISEEAAEIREYTE 251
           L  ++P  +  +   F+PESPRWL   G+  E+   LQR+   +   +  E   +    +
Sbjct: 247 LAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKD 306

Query: 252 TLERLSEGGILELF 265
                 +   L+LF
Sbjct: 307 LSSSKKQYSFLDLF 320

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 41  TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY 100
             +   G ++ G   G  SPA   +  DLGLS ++  L  S  ++G  +G++++G ++D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 101 IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL 160
            GRR  +    ++  +G +++ F+ + W L +GR L+G G G L       IAE  P   
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 161 RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIP 210
           RG    +      +G  +  L+G  L     WR L LI  I  L+  + L F+ 
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 67/274 (24%), Positives = 115/274 (41%), Gaps = 21/274 (7%)

Query: 54  AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113
           A+G+++PA   I+ + GL   +     S   IG   GA+  G +AD IGRR  + +S ++
Sbjct: 35  AMGFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILL 91

Query: 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC 173
             +  ++   +     L + R L G G+G L   +   ++E  PK  RG    +      
Sbjct: 92  FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP 151

Query: 174 IGVSMTYLIGAFL----NWRILALIGTI-PCLVQLIGLCFIPESPRWL----AKTGKGIE 224
           IG ++   +  +L     WR L  +G I P L+ L+ + F+PES  +L     +T + I 
Sbjct: 152 IGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIV 211

Query: 225 SEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284
           +  A Q    A + + E+ A                   LFQ K A   ++   L  +  
Sbjct: 212 NAIAPQMQAEAQSALPEQKATQGTKRSVF--------KALFQGKTARITVLLWLLYFMLL 263

Query: 285 FGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQV 318
             GV  +  +   + +  GFS S+      +   
Sbjct: 264 V-GVYFLTNWLPKLMVELGFSLSLAATGGALFNF 296

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 38/233 (16%)

Query: 25  ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
           E G G        VL   +   G  VF   +G+  P+      DL +  +   + G I+ 
Sbjct: 158 ECGHGRFQWALFFVLGLALMADGVEVF--VVGFVLPSAE---KDLCIPDSGKGMLGLIVY 212

Query: 85  IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
           +G M+GA   G +AD +GR+  +     V         F +   +    RLL G+G+G  
Sbjct: 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272

Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA-------------------- 184
             +V  Y AE   +  RG     H   +C    M ++IG                     
Sbjct: 273 IPIVFSYFAEFLAQEKRGE----HLSWLC----MFWMIGGIYAAAMAWAIIPHYGWSFQM 324

Query: 185 -----FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRL 232
                F +WR+  ++   PC+  +  L F+PESPR+  + GK  E+   L+ +
Sbjct: 325 GSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 11/204 (5%)

Query: 37  VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
           + L+ F+A  G  + G A+         +  DLG+S  E  L  +  ++G  +   ++G+
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY------LAEDLGISPTEIGLLLTAFSLGYALAQPLAGR 54

Query: 97  IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
           ++D  GRR  +    ++  +G ++++F+ + W L + R+L G G G L       IA+  
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV-QLIGLCFIPE 211
           P   RG    +      +G ++  L+G  L     WR   LI  I  L+  ++    +P 
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPR 174

Query: 212 SPRWLAKTGKGIESEAALQRLRGA 235
            P    +     E+ A L      
Sbjct: 175 PPPESKRPKPAEEAPAPLVPAWKL 198

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 29/191 (15%)

Query: 61  AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
           A   +  + GL VA+     S   +G + GA++ G++AD IGR+  +  S  V + G   
Sbjct: 37  AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS--VALFG--- 91

Query: 121 IVFSKA---AWWLD---LGRLLVGYGMGLLSYVVPVYIA---EITPKNLRGGFTTVHQLM 171
            +FS A   AW      + RLL G G+G     +P  IA   E     LRG   T   LM
Sbjct: 92  -LFSLATAQAWDFPSLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRG---TAVSLM 144

Query: 172 IC---IGVSMTYLIGAFL----NWRILALIGTI-PCLVQLIGLCFIPESPRWLAKTGKGI 223
            C    G ++  +IG        WR +  +G + P L+  + + ++PES  +    G G 
Sbjct: 145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK 204

Query: 224 ESEAALQRLRG 234
           +    L+ L G
Sbjct: 205 QRAPVLRALFG 215

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 8/180 (4%)

Query: 36  AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSG 95
            ++L        S+ +   + Y       +   LGLS AE  L  S+  +G ++GA++ G
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLY---LQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232

Query: 96  KIADYIGRR-GTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAE 154
            ++D +GRR   +    ++  +G +++  + +   L +  LL+G+G+G     +    +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292

Query: 155 ITPKNLRGG----FTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIP 210
           + P   RG     F T   L   +G  +  L+     +  + LI     L+  + L  +P
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%)

Query: 65  ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
           I  DLGL+  E +   +   IG   G  + G +AD  GR+  M +S +   +G  +   +
Sbjct: 44  IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103

Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIG-VSMTYLIG 183
                L L R +VG GM         Y  E  PK+L+   +        IG +   Y + 
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163

Query: 184 AF---LNWRILALIGTIPCLVQLIGLCFIPESPRWLAK--TGKGIESEAA 228
           +F     WR    +G +P L+ +      PES  W     +GKG  S++A
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSA 213

Length = 426

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 85  IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
           +G +I + +SG + D  GR+  +     + ++   +   S     L + R L G+G    
Sbjct: 9   LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68

Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200
                  IA+I P   RG    +    I +G  +   +G  L     WR   L   I  L
Sbjct: 69  LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128

Query: 201 VQLIGLCFIPE 211
              I L F+  
Sbjct: 129 AAFILLAFLLP 139

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)

Query: 30  SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMI 89
            A+A   + L+       ++  G+           I  DLG+S        +   +G  +
Sbjct: 4   PATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVAL 63

Query: 90  GAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVP 149
           GA +   +   + RR  +     + I+  ++   + +   L L R L G   G+   +  
Sbjct: 64  GAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAA 123

Query: 150 VYIAEITPKNLRG--------GFTTVHQLMICIGVSMTYLIGAFLNWR----ILALIGTI 197
              A + P   RG        G T    L   +GV +   +G    WR     +A++  +
Sbjct: 124 ALAARLVPPGKRGRALALVFTGLT----LATVLGVPLGTFLGQLFGWRATFLAIAVLALL 179

Query: 198 PCLVQLI 204
             L+   
Sbjct: 180 ALLLLWK 186

Length = 394

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 4/172 (2%)

Query: 65  ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
           +  + GL+  + +   S   I    G ++ G + D  GRR  M  S ++  +G +   F+
Sbjct: 46  VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA 105

Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184
              W L + RL++G GM         Y+ E  PK+LR   +        IG  +   + +
Sbjct: 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165

Query: 185 FL----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRL 232
            +     WR L  IG +P +  L     +PE+  W  K          +  L
Sbjct: 166 LVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217

Length = 496

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 36  AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSG 95
            ++L   +      V    + Y        T  LG +   +S+   I TI A++GA +  
Sbjct: 226 ILLLLYLLNALAMAVRNGLLLYY------FTYVLG-NAGLFSVLLLIGTIAAILGAPLWP 278

Query: 96  KIADYIGRRGTMGFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153
            +A   G++ T     ++  IG V++ F    + W   +  +L G G+GL + +    +A
Sbjct: 279 WLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLA 338

Query: 154 EI 155
           ++
Sbjct: 339 DV 340

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%)

Query: 37  VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
            VL   +A+        A+    P        LGLS     L   +  +   IG ++ G+
Sbjct: 203 PVLWLLLALLLFGFAFFALLTYLPL---YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGR 259

Query: 97  IADYIGRRGTMGFSDIVCII---GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153
           ++D +GRR  +  + ++ I+   G  ++  ++++ WL +  LL+G+G GL+   +   ++
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319

Query: 154 EITPKNLRGGFTTVHQLMICIGVSM 178
           ++ PK  RG  + ++     +G ++
Sbjct: 320 DLAPKEERGTASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 20/136 (14%)

Query: 89  IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV----FSKAAWW----LDLGRLLVGYG 140
           +GAI+ G   D IGR+ T+  + ++  IG ++I     ++    W    L L RL+ G+ 
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN------------W 188
           +G       +Y+AE  P   RG + +  Q+   +G+ +  L    L+            W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 189 RILALIGTIPCLVQLI 204
           RI  L+  +  L+ L 
Sbjct: 170 RIPFLVSAVLVLIGLY 185

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 26/146 (17%)

Query: 89  IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD------LGRLLVGYGMG 142
            GA+M G   D  GRR  M    +  I+ +     +    +        + RL++G GMG
Sbjct: 62  FGALMFGLWGDRYGRRLPM----VTSIVLFSAGTLACG--FAPGYITMFIARLVIGIGMG 115

Query: 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----------LNWRILA 192
                   Y+ E  PK+LR   + +       G ++  ++ A             WR L 
Sbjct: 116 GEYGSSAAYVIESWPKHLRNKASGLLIS----GYAVGAVVAAQVYSLVVPVWGDGWRALF 171

Query: 193 LIGTIPCLVQLIGLCFIPESPRWLAK 218
            I  +P +  L     IPE+  W  K
Sbjct: 172 FISILPIIFALWLRKNIPEAEDWKEK 197

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 58/265 (21%), Positives = 90/265 (33%), Gaps = 48/265 (18%)

Query: 85  IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW--------WLDLGRLL 136
           IG + G +  G +AD +GR+   G   I+ II  V    S             L   R  
Sbjct: 67  IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFW 124

Query: 137 VGYGMGLLSYVVPVYI-AEITPKNLRGGFTTVHQLM-----ICIGVSMTYLIGAFLN--- 187
           +G G+G   Y +   I +E   K  RG        M     +   +    ++  F +   
Sbjct: 125 LGVGIGG-DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLE 183

Query: 188 -------------------WRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAA 228
                              WRIL   G +P L+ L     IPE+PR+ A   K +E  A+
Sbjct: 184 AAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAAS 243

Query: 229 LQR--LRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286
                L+       +E  +     E  +          F+ ++   L+   G   L    
Sbjct: 244 DMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLD-- 301

Query: 287 GVNGIAFYASSIFISAGFSGSIGMI 311
               IAFY  ++      S +IG  
Sbjct: 302 ----IAFYGVNLNQKVILS-AIGYS 321

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 65  ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
           I  DLGLS +   L  ++  +   + A  + ++A   G   ++  + ++   G +I    
Sbjct: 38  IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG 97

Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----- 179
                L LG LL G G+ +++ ++P  I    PK + G  T ++   +  G ++      
Sbjct: 98  -GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAV 155

Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPR 214
            L      WR       +  L+ L+   ++P++ R
Sbjct: 156 PLAQHSGGWRGALGFWALLALLALLI--WLPQALR 188

Length = 395

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
KOG0569	485	consensus Permease of the major facilitator superf	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
KOG0254	513	consensus Predicted transporter (major facilitator	99.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.94
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.94
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.93
PRK12307	426	putative sialic acid transporter; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
TIGR00895	398	2A0115 benzoate transport.	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PLN00028	476	nitrate transmembrane transporter; Provisional	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.92
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.91
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
KOG2532	466	consensus Permease of the major facilitator superf	99.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.9
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK15075	434	citrate-proton symporter; Provisional	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
PRK03699	394	putative transporter; Provisional	99.9
KOG2533	495	consensus Permease of the major facilitator superf	99.9
TIGR00805	633	oat sodium-independent organic anion transporter.	99.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.89
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.89
PRK11043	401	putative transporter; Provisional	99.89
TIGR00900	365	2A0121 H+ Antiporter protein.	99.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.88
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.88
PRK10133	438	L-fucose transporter; Provisional	99.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.88
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.87
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.87
PRK10504	471	putative transporter; Provisional	99.87
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.87
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.86
PRK05122	399	major facilitator superfamily transporter; Provisi	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
PRK12382	392	putative transporter; Provisional	99.86
PRK10054	395	putative transporter; Provisional	99.86
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.85
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.84
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.84
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.84
PRK10489	417	enterobactin exporter EntS; Provisional	99.83
PRK09874	408	drug efflux system protein MdtG; Provisional	99.83
TIGR00901	356	2A0125 AmpG-related permease.	99.81
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.8
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.8
PRK10642	490	proline/glycine betaine transporter; Provisional	99.8
KOG2615	451	consensus Permease of the major facilitator superf	99.8
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.79
PTZ00207	591	hypothetical protein; Provisional	99.79
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.79
PRK11010	491	ampG muropeptide transporter; Validated	99.79
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.79
PRK11902	402	ampG muropeptide transporter; Reviewed	99.78
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.78
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.77
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.76
PRK15011	393	sugar efflux transporter B; Provisional	99.76
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.76
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.75
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.75
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.75
PRK09528	420	lacY galactoside permease; Reviewed	99.73
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.67
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.67
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.66
PRK15011	393	sugar efflux transporter B; Provisional	99.64
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.64
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.63
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.62
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.6
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.59
KOG3626	735	consensus Organic anion transporter [Secondary met	99.58
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.57
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.54
PRK05122	399	major facilitator superfamily transporter; Provisi	99.53
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.53
PRK03699	394	putative transporter; Provisional	99.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.52
PRK09952	438	shikimate transporter; Provisional	99.52
PRK12382	392	putative transporter; Provisional	99.49
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.48
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.48
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.47
KOG2563	480	consensus Permease of the major facilitator superf	99.47
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.46
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.46
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.46
PRK09874	408	drug efflux system protein MdtG; Provisional	99.45
PRK03633	381	putative MFS family transporter protein; Provision	99.43
PRK10489	417	enterobactin exporter EntS; Provisional	99.43
PRK09705	393	cynX putative cyanate transporter; Provisional	99.42
PRK03545	390	putative arabinose transporter; Provisional	99.41
PRK03893	496	putative sialic acid transporter; Provisional	99.41
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.4
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.4
TIGR00891	405	2A0112 putative sialic acid transporter.	99.4
TIGR00898	505	2A0119 cation transport protein.	99.39
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.37
PRK10429	473	melibiose:sodium symporter; Provisional	99.37
TIGR00895	398	2A0115 benzoate transport.	99.37
PLN00028	476	nitrate transmembrane transporter; Provisional	99.37
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.35
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.35
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.35
PRK09669	444	putative symporter YagG; Provisional	99.34
PRK10504	471	putative transporter; Provisional	99.34
PRK12307	426	putative sialic acid transporter; Provisional	99.33
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.33
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.33
PRK11663	434	regulatory protein UhpC; Provisional	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.32
KOG0569	485	consensus Permease of the major facilitator superf	99.31
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.31
TIGR00900	365	2A0121 H+ Antiporter protein.	99.31
PRK11010	491	ampG muropeptide transporter; Validated	99.3
PF13347	428	MFS_2: MFS/sugar transport protein	99.3
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.29
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.29
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.27
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.27
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.26
PRK15075	434	citrate-proton symporter; Provisional	99.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.24
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.23
PRK10054	395	putative transporter; Provisional	99.22
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.22
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.21
PRK11462	460	putative transporter; Provisional	99.21
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.19
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.19
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.18
PRK09848	448	glucuronide transporter; Provisional	99.18
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.18
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.18
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.17
PRK09848	448	glucuronide transporter; Provisional	99.17
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.16
PRK11902	402	ampG muropeptide transporter; Reviewed	99.15
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.15
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.15
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.15
PRK10091	382	MFS transport protein AraJ; Provisional	99.14
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.14
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.13
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.13
TIGR00901	356	2A0125 AmpG-related permease.	99.13
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.13
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.12
PRK10429	473	melibiose:sodium symporter; Provisional	99.12
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.12
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.1
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.1
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.1
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.09
COG2211	467	MelB Na+/melibiose symporter and related transport	99.08
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.08
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.08
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.07
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
PF13347	428	MFS_2: MFS/sugar transport protein	99.03
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.0
PRK10133	438	L-fucose transporter; Provisional	99.0
COG2211	467	MelB Na+/melibiose symporter and related transport	98.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.98
PRK09669	444	putative symporter YagG; Provisional	98.93
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.92
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.91
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.89
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.89
PRK11043	401	putative transporter; Provisional	98.87
COG0477	338	ProP Permeases of the major facilitator superfamil	98.87
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.86
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.86
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.79
KOG0254	513	consensus Predicted transporter (major facilitator	98.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.79
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.75
KOG2532	466	consensus Permease of the major facilitator superf	98.75
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.73
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.7
PRK11462	460	putative transporter; Provisional	98.68
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.66
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.62
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.58
KOG3762	618	consensus Predicted transporter [General function	98.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.5
PF12832	77	MFS_1_like: MFS_1 like family	98.43
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.42
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.4
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.38
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.38
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.36
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.35
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.23
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.21
PTZ00207	591	hypothetical protein; Provisional	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.16
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.14
KOG0637	498	consensus Sucrose transporter and related proteins	98.07
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.94
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.87
KOG2615	451	consensus Permease of the major facilitator superf	97.8
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.66
COG3202	509	ATP/ADP translocase [Energy production and convers	97.66
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.61
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.59
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.56
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.46
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.44
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.43
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.35
PRK03612	521	spermidine synthase; Provisional	97.33
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.22
KOG3810	433	consensus Micronutrient transporters (folate trans	97.2
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.2
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.14
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.95
KOG3762	618	consensus Predicted transporter [General function	96.89
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.37
KOG2563	480	consensus Permease of the major facilitator superf	96.34
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.21
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.18
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.5
TIGR00805	633	oat sodium-independent organic anion transporter.	95.35
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.97
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.24
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.21
KOG3097	390	consensus Predicted membrane protein [Function unk	93.32
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	91.56
COG4262	508	Predicted spermidine synthase with an N-terminal m	88.21
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	87.75
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	86.03
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	85.46
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	83.82
KOG3626	735	consensus Organic anion transporter [Secondary met	82.55
KOG3880	409	consensus Predicted small molecule transporter inv	81.72
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	80.76
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	80.73

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.8e-29  Score=224.19  Aligned_cols=280  Identities=35%  Similarity=0.563  Sum_probs=229.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhcccccccchhcc--------ccccC--CChh----hHHHHHHHHHHHHHHHHHhHHHh
Q 020792           32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGI--------TNDLG--LSVA----EYSLFGSILTIGAMIGAIMSGKI   97 (321)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~s~~----~~~~~~~~~~~~~~i~~~~~g~l   97 (321)
                      ++.++.......+.++.+-++|..+..++..+.+        .+++|  .+++    ..+.+.+.+.+|.++|+++.|++
T Consensus         4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l   83 (485)
T KOG0569|consen    4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL   83 (485)
T ss_pred             CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666667777777788999998888865533        34455  3333    25788999999999999999999


Q ss_pred             hhhccchHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH
Q 020792           98 ADYIGRRGTMGFSDIVCIIGWVIIVF---SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI  174 (321)
Q Consensus        98 ~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  174 (321)
                      +||+|||..+.++.++..++.++..+   .+++.+++++|++.|+..|......+.++.|..|++.||....+.+.+..+
T Consensus        84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~  163 (485)
T KOG0569|consen   84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI  163 (485)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence            99999999999998888887776665   578889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc------chhhHHHHHHhHHHHHHHHHHhhcccCChHHHHh-cCChHHHHHHHHHHhCCCcchHHHHHHHH
Q 020792          175 GVSMTYLIGA------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAK-TGKGIESEAALQRLRGADADISEEAAEIR  247 (321)
Q Consensus       175 g~~~~~~i~~------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (321)
                      |..++..++.      .-.|++.+.+..+++++.++...++||+|+|+.. +++++++++++++.++++++.++..+..+
T Consensus       164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~  243 (485)
T KOG0569|consen  164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR  243 (485)
T ss_pred             HHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence            9998866652      2269999999999999999999999999999976 89999999999999988754444333333


Q ss_pred             HHHHH-Hhcccccchhhhhhhh-hhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCchHHH
Q 020792          248 EYTET-LERLSEGGILELFQRK-YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMI  311 (321)
Q Consensus       248 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  311 (321)
                      +.+++ .+++++.+++++++++ .+++..+.+.+...+++.+.+.+.+|++.++++.|+++..+..
T Consensus       244 e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~  309 (485)
T KOG0569|consen  244 EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQY  309 (485)
T ss_pred             HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHH
Confidence            32222 2334677899999985 4677888889999999999999999999999999998874433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=3.7e-29  Score=235.35  Aligned_cols=267  Identities=21%  Similarity=0.280  Sum_probs=211.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH
Q 020792           34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV  113 (321)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  113 (321)
                      .+..|.+++++.++.+..++....++..+|.+.+++|++..+.+++.+++.++.+++.+++|+++||+|||+++++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            35566666777777778888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc--------
Q 020792          114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF--------  185 (321)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~--------  185 (321)
                      .+++.++++++++++.++++|++.|++.|+..+...++++|++|+++|++..++...+..+|.++++.++..        
T Consensus       242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~  321 (742)
T TIGR01299       242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS  321 (742)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            999999999999999999999999999999999999999999999999999999999999998888765422        


Q ss_pred             ---------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcch---HHHH---HHHHHHH
Q 020792          186 ---------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI---SEEA---AEIREYT  250 (321)
Q Consensus       186 ---------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~  250 (321)
                               .+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++.+.+...   .++.   ++.+...
T Consensus       322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~  401 (742)
T TIGR01299       322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH  401 (742)
T ss_pred             hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence                     169999998888877777777889999999999999999999999887654211   1110   0111000


Q ss_pred             HH------Hhcccc-----------------cchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhh
Q 020792          251 ET------LERLSE-----------------GGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS  301 (321)
Q Consensus       251 ~~------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (321)
                      ..      +++...                 ..++++++.+.++++++ +++.+++...+++++..|.|.++++
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~-l~~~wf~~~~~yygl~~w~P~~~~~  474 (742)
T TIGR01299       402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK-LMGVWFTLSFGYYGLSVWFPDMIKH  474 (742)
T ss_pred             hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00      000000                 13555666666555554 5555666666789999999998755

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=1.1e-27  Score=220.85  Aligned_cols=287  Identities=33%  Similarity=0.581  Sum_probs=230.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhc--ccccccchhcccccc-----CCCh--hhHHHHHHHHHHHHHHHHHhHHHhhhhccch
Q 020792           34 TSAVVLSTFVAVCGSYVFGSA--IGYSSPAQSGITNDL-----GLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIGRR  104 (321)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr  104 (321)
                      ............++.+..+++  .+...+....+.++.     ..+.  .+.+++.+...++..+++++.|+++|++|||
T Consensus        40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk  119 (513)
T KOG0254|consen   40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK  119 (513)
T ss_pred             ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            344555566666777777775  556666666555532     2222  3458999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhc
Q 020792          105 GTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA  184 (321)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  184 (321)
                      +.++++.+...++.+++++++|++++.++|++.|+|.|....+.+.+++|..|++.||...+..+....+|..++..++.
T Consensus       120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~  199 (513)
T KOG0254|consen  120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY  199 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977776


Q ss_pred             ch-----hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCC-CcchHHHHHHHH-HHHHHHh-cc
Q 020792          185 FL-----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA-DADISEEAAEIR-EYTETLE-RL  256 (321)
Q Consensus       185 ~~-----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~~  256 (321)
                      ..     +||..+.+..+.+++..+..+++||+|+|+.++++.+++++.+++++.. +.+.+.+.++.+ +...+.. ..
T Consensus       200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  279 (513)
T KOG0254|consen  200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE  279 (513)
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence            66     6999999988888888877788999999999999999999999999883 334444444443 1111111 12


Q ss_pred             cccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCC--chHHHHHHHHHHhc
Q 020792          257 SEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG--SIGMIAMVVIQVID  320 (321)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~i~g  320 (321)
                      .+..+.+++++..+++..+.+.+..+++..+.+.+.+|.+.+++..|.+.  .....+.++.++++
T Consensus       280 ~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~  345 (513)
T KOG0254|consen  280 GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLG  345 (513)
T ss_pred             ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence            22246677776677888889999999999999999999999999998864  46666666665554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=1.4e-27  Score=220.05  Aligned_cols=272  Identities=19%  Similarity=0.245  Sum_probs=199.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhcccccccchhccccc-----cCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHH
Q 020792           32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITND-----LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGT  106 (321)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~  106 (321)
                      +..+..+..+.++.++.+.++++....+...|.+.++     .+.+..+.+++.+...++..++.+++|+++||+|||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~   88 (502)
T TIGR00887         9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV   88 (502)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            3445566667777788889999998888887766553     24556678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHH
Q 020792          107 MGFSDIVCIIGWVIIVFSKA------AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY  180 (321)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  180 (321)
                      +.+++++..++.++++++++      ++.+++.|++.|++.|..++..+.+++|++|+++|+++.++.+....+|..+++
T Consensus        89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888765      678999999999999999999999999999999999999999999999888777


Q ss_pred             Hhhcc---------------------------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChH-HHHHHHHHH
Q 020792          181 LIGAF---------------------------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGI-ESEAALQRL  232 (321)
Q Consensus       181 ~i~~~---------------------------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~  232 (321)
                      .++..                           .+||+++.+.++++++..+..+++||+|+|+..+++++ ++.+.+.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~  248 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV  248 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence            66431                           16999998888888877777788999999998877764 455556555


Q ss_pred             hCCCcc-hHHHHHHHHHHHHHHhcccccchhhhhhhhh---hhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCc
Q 020792          233 RGADAD-ISEEAAEIREYTETLERLSEGGILELFQRKY---AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS  307 (321)
Q Consensus       233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  307 (321)
                      ...+.+ ..++.++.++   + ++..+.+++++++++.   .++..+.+....+.....++....|.|.++++.|+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~  323 (502)
T TIGR00887       249 LQVKIEAEPDEVEKAST---A-VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPP  323 (502)
T ss_pred             hccccccCcccccchhc---c-ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCC
Confidence            432211 1111111000   0 0111234677776422   22233333333333333456677889999988888654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=1.9e-26  Score=210.88  Aligned_cols=282  Identities=32%  Similarity=0.546  Sum_probs=205.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCC--------hhhHHHHHHHHHHHHHHHHHhHHHhhhhccchH
Q 020792           34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLS--------VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG  105 (321)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~  105 (321)
                      .++.+...+++.+..+...++.....+..+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~  102 (481)
T TIGR00879        23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKK  102 (481)
T ss_pred             cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH
Confidence            355555566666777777888888888888888777776        789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHh
Q 020792          106 TMGFSDIVCIIGWVIIVFS---KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI  182 (321)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i  182 (321)
                      +++++.++.+++.+++.+.   .+++.+++.|++.|++.+..++....++.|++|+++|+++.++.+.+..+|..+++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~  182 (481)
T TIGR00879       103 SLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGF  182 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999998888654   3455899999999999999999999999999999999999999999999999999998


Q ss_pred             h---cc----hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHH---HHHHHHHH
Q 020792          183 G---AF----LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAA---EIREYTET  252 (321)
Q Consensus       183 ~---~~----~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  252 (321)
                      +   ..    .+||+.|++.++..++..+..+++||+|++...+++.+++.+..++....+.+..+..+   ..+...+.
T Consensus       183 ~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (481)
T TIGR00879       183 GSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI  262 (481)
T ss_pred             HHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence            8   33    38999999977766666666677899988776666655555544444332222111111   11111111


Q ss_pred             Hhcccccchhhhhhhh--hhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCchHHHHHHH
Q 020792          253 LERLSEGGILELFQRK--YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVV  315 (321)
Q Consensus       253 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  315 (321)
                      +.+.....+.+.++..  ..++.++..++..+......+.+.+|.|.++++.|++...+.....+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  327 (481)
T TIGR00879       263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSII  327 (481)
T ss_pred             HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHH
Confidence            1111112233333321  23555566666666666666778899999998889988654444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=4.2e-26  Score=209.34  Aligned_cols=268  Identities=27%  Similarity=0.443  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccchhcccccc--------CCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH
Q 020792           36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL--------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM  107 (321)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l  107 (321)
                      ..........++.+..+++...+++..|.+++++        +.+..+.+++.+.+.++..++++++|+++||+|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~   88 (479)
T PRK10077          9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (479)
T ss_pred             HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3444556666778899999999998888787766        88899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHH
Q 020792          108 GFSDIVCIIGWVIIVFS------------KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIG  175 (321)
Q Consensus       108 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  175 (321)
                      +++.++.+++.+..++.            ..++.+++.|++.|++.|..++...++++|++|+++|++++++.+.+..+|
T Consensus        89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G  168 (479)
T PRK10077         89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG  168 (479)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence            99999998888877753            224677899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc------------chhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHH
Q 020792          176 VSMTYLIGA------------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEA  243 (321)
Q Consensus       176 ~~~~~~i~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (321)
                      ..+++.++.            ..+||+.|++.+++.++..+..+++||+|+++..+++.+++++..++....++ ..+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~  247 (479)
T PRK10077        169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQAL  247 (479)
T ss_pred             HHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHH
Confidence            888776543            23899999998887777766667789999988777777766665555543321 11111


Q ss_pred             HHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCchH
Q 020792          244 AEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIG  309 (321)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  309 (321)
                      ++.++...++ ...   .+..+. .........+....+.+..+.+...+|.|.++++.|.+....
T Consensus       248 ~~~~~~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~  308 (479)
T PRK10077        248 QEIKHSLDHG-RKT---GGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA  308 (479)
T ss_pred             HHHHHHHHHh-hhh---hhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchH
Confidence            1111111100 000   011111 111122223334455555667778889999998888876533

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=5.8e-26  Score=204.17  Aligned_cols=175  Identities=17%  Similarity=0.183  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHH
Q 020792           40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV  119 (321)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  119 (321)
                      ...++++.++..+++....+...|.+++++|++.++.+++.+++.+++.+++++.|+++||+|||+++..+.++..++..
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~   88 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST   88 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            33444445555566666667777789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc----------hhhH
Q 020792          120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----------LNWR  189 (321)
Q Consensus       120 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~----------~~w~  189 (321)
                      +++++++++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++.          .+||
T Consensus        89 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr  168 (412)
T TIGR02332        89 ATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ  168 (412)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence            999999999999999999999999999999999999999999999999999999999988887653          3899


Q ss_pred             HHHHHhHHHHHHHHHHh-hcccCChH
Q 020792          190 ILALIGTIPCLVQLIGL-CFIPESPR  214 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~~-~~~~e~~~  214 (321)
                      +.|++.+++.++..++. +++||+|+
T Consensus       169 ~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       169 WLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            99999888776654444 56788874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1e-26  Score=198.72  Aligned_cols=267  Identities=19%  Similarity=0.191  Sum_probs=203.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH
Q 020792           32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD  111 (321)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  111 (321)
                      ..++.++.++..+++++..++...-..+...|.+.++.++|.+|.|.+.+.+.+.+.++.++.|.++||.+.|+.+.+++
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            34455566667777777777777777788888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh--cch---
Q 020792          112 IVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG--AFL---  186 (321)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~--~~~---  186 (321)
                      ++.++..++++++++.+.+.++.++.|+.+|...|.+...+..|+|+++||+..++.+...++|+.+.|++.  +++   
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999998888777  544   


Q ss_pred             -hhHHHHHHhHHHHHHHHHHh-hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhh-
Q 020792          187 -NWRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE-  263 (321)
Q Consensus       187 -~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  263 (321)
                       +||..|++.++++++..+.. +..+++|+..   +-     +          +.++-.++..+..++++..+..+.++ 
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GL-----P----------~ie~~~~d~~e~~~~~~~~~~ls~~~i  243 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GL-----P----------PIEEYRGDPLEIYEEEKENEGLTAWQI  243 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CC-----C----------CHHHhhcCchhhhhhhccCCCccHHHH
Confidence             89999999998877766555 4567776421   10     0          11111111111101111112133333 


Q ss_pred             ----hhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc-CCCCchHHHHHHHHHHhc
Q 020792          264 ----LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGSIGMIAMVVIQVID  320 (321)
Q Consensus       264 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~g  320 (321)
                          +++++..|-+    ++........-+++..|.|.|+.|. |+|...+....+++.+.|
T Consensus       244 ~~~YVL~Nk~iW~l----a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~ag  301 (448)
T COG2271         244 FVKYVLKNKLIWLL----ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAG  301 (448)
T ss_pred             HHHHHHcChHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence                3444444433    3333333334688999999999988 999998888888776654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=8.4e-26  Score=195.24  Aligned_cols=172  Identities=19%  Similarity=0.267  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHH
Q 020792           39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW  118 (321)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  118 (321)
                      ..++...++.|..+.........+|.+++|+|+|..+.|+..++|.++..++.|+...+.||+.||++++..+.+++++.
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n   92 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN   92 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            34455566666777777777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHH
Q 020792          119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI  194 (321)
Q Consensus       119 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~  194 (321)
                      +++++++|++.++++|++.|+..|..++...++..++.|+++|++++++...+..++.+++.+++.++    |||+.|+.
T Consensus        93 ~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~  172 (394)
T COG2814          93 LLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA  172 (394)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888776666554    99999999


Q ss_pred             hHHHHHHHHHHh-hccc
Q 020792          195 GTIPCLVQLIGL-CFIP  210 (321)
Q Consensus       195 ~~~~~~~~~~~~-~~~~  210 (321)
                      .+.++++.++.. ..+|
T Consensus       173 ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         173 IAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            999988877765 4567

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=8.8e-26  Score=208.52  Aligned_cols=256  Identities=22%  Similarity=0.326  Sum_probs=193.7

Q ss_pred             cchhccccccCCC---hhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           60 PAQSGITNDLGLS---VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        60 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      +..|.+.+++|++   ..+.++..+++.++..++++++|+++||+|||++++++.++.+++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4567799999999   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-hhHHHHHHhHHHHHHHHHHhhcccCChHH
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-NWRILALIGTIPCLVQLIGLCFIPESPRW  215 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-~w~~~~~~~~~~~~~~~~~~~~~~e~~~~  215 (321)
                      .|++.+...+....++.|++|+++|+.+.++...+..+|.++++.++..+ +||+.+++.+++.++..+..+++||+|+|
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~  269 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW  269 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            99999999999999999999999999999999999999999999888766 79999999988888777777788999999


Q ss_pred             HHhcCChHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHc
Q 020792          216 LAKTGKGIESEAALQRLRGADADI-SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY  294 (321)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (321)
                      +..+++.+++.+.+++..+.+... .++..+.+...+..+++++.+++++++++..+...+.+++.++.....++.+.  
T Consensus       270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  347 (505)
T TIGR00898       270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLV--  347 (505)
T ss_pred             HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            999998888877776654332211 11111111111111122235678888887776666655555443322222222  


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHh
Q 020792          295 ASSIFISAGFSGSIGMIAMVVIQVI  319 (321)
Q Consensus       295 ~~~~~~~~g~s~~~~~~~~~~~~i~  319 (321)
                        .+....+.+......+.++..++
T Consensus       348 --~~~~~~~~~~~~~~~~~~~~~i~  370 (505)
T TIGR00898       348 --LDLGNLGGNIYLDLFISGLVELP  370 (505)
T ss_pred             --ccccccCCChHHHHHHHHHHHHH
Confidence              22333355554444455544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=7.3e-25  Score=196.50  Aligned_cols=180  Identities=23%  Similarity=0.263  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHH
Q 020792           36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI  115 (321)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  115 (321)
                      ..+......++..+..+++.....+..|.+++++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34444555666677777777777888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h--hH
Q 020792          116 IGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N--WR  189 (321)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~--w~  189 (321)
                      ++.++++++++++.+++.|++.|++.+..++...+++.|++|+++|+++.++.+.+..+|..+++.++..+    +  ||
T Consensus        89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~  168 (405)
T TIGR00891        89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWR  168 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888877654    4  99


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCChHH
Q 020792          190 ILALIGTIPCLVQLIGLCFIPESPRW  215 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~~~~  215 (321)
                      +.|++.++..++..+....+||++++
T Consensus       169 ~~f~~~~~~~~~~~~~~~~~~~~~~~  194 (405)
T TIGR00891       169 ALFFISILPIIFALWLRKNIPEAEDW  194 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            99988766666655555667887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=8.3e-25  Score=200.99  Aligned_cols=247  Identities=17%  Similarity=0.154  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHHhhcccccccchhccccccCCChhh----HHH--HHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH
Q 020792           40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAE----YSL--FGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV  113 (321)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~--~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  113 (321)
                      ......++.+..+++...++...|.+.++++.+.++    .+.  ..++..++..++++++|+++||+|||+++.++.++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            345556778888888888888888898888644322    222  24778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHH--------HHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh--
Q 020792          114 CIIGWVIIVFSKAAWW--------LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG--  183 (321)
Q Consensus       114 ~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~--  183 (321)
                      ++++++++++++++..        ++++|+++|++.|..++....+++|++|+++||++.++...+..+|..+++.+.  
T Consensus        97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~  176 (490)
T PRK10642         97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL  176 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999864        789999999999999999999999999999999999999888777777666433  


Q ss_pred             --c--------chhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Q 020792          184 --A--------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETL  253 (321)
Q Consensus       184 --~--------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (321)
                        .        ..+||+.|++.+++.++.+++...+||+|++...+++.++..                    +   +..
T Consensus       177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~--------------------~---~~~  233 (490)
T PRK10642        177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD--------------------R---EGL  233 (490)
T ss_pred             HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc--------------------c---ccc
Confidence              2        248999999977666665555567899987643221110000                    0   000


Q ss_pred             hcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc-CCCCchHHH
Q 020792          254 ERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGSIGMI  311 (321)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~  311 (321)
                      ++.++.++++++++ .++........ .+.....++.+..|.|.++++. |++...+..
T Consensus       234 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~  290 (490)
T PRK10642        234 QDGPKVSFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSEDHGVL  290 (490)
T ss_pred             cccccCCHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            00122345566654 22333322222 2223334667788999999655 887764443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.94  E-value=1e-25  Score=205.89  Aligned_cols=182  Identities=18%  Similarity=0.084  Sum_probs=151.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHH
Q 020792           33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDI  112 (321)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  112 (321)
                      +.+..+..+.+..++++..+.+....+...|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus        23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            44445555666666777777777777888899999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHH-----hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-
Q 020792          113 VCIIGWVIIVF-----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-  186 (321)
Q Consensus       113 ~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-  186 (321)
                      +++++.++.+.     +++++.+++.|++.|++.+...+....+++|++|+++||+++++...+..+|..+++.+..+. 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            88777766554     589999999999999999999999999999999999999999999999999988888776432 


Q ss_pred             ------hhHHHHHHhHHHHHHHHHHh-hcccCChH
Q 020792          187 ------NWRILALIGTIPCLVQLIGL-CFIPESPR  214 (321)
Q Consensus       187 ------~w~~~~~~~~~~~~~~~~~~-~~~~e~~~  214 (321)
                            +||..|.+.+++.++..+.. ++.+++|+
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence                  48888888777766555444 34566553

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.94  E-value=3.2e-25  Score=195.84  Aligned_cols=213  Identities=15%  Similarity=0.086  Sum_probs=159.8

Q ss_pred             cccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 020792           58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV  137 (321)
Q Consensus        58 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (321)
                      +.+.+|.+++++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.......++++.+++.|++.
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~   89 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLA   89 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999987665555544433333337899999999999


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      |++.+. .......++|++|+++|++++++.+.+..+|..+++.++..+    +||+.|++.++++++..+.. +++||+
T Consensus        90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~  168 (368)
T TIGR00903        90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPAL  168 (368)
T ss_pred             HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999986 555666679999999999999999999999999888887766    99999999888776655544 567887


Q ss_pred             hHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHH
Q 020792          213 PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIA  292 (321)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (321)
                      |++.   ++.            .  +. +   +   .        ..+++++++++..+...+.    .++....++.+.
T Consensus       169 p~~~---~~~------------~--~~-~---~---~--------~~~~~~ll~~~~~~~~~~~----~~~~~~~~~~~~  212 (368)
T TIGR00903       169 PFQA---AEG------------F--GF-K---D---A--------VKEFGALAGRKDLWIIGAI----LGFGVALFDNLA  212 (368)
T ss_pred             CCCC---CCC------------c--ch-H---H---H--------HHHHHHHHcChhHHHHHHH----HHHHHHHHHHHH
Confidence            6431   000            0  00 0   0   0        0124567776665444333    333334467888


Q ss_pred             HcHHHHHhhcCCCCc
Q 020792          293 FYASSIFISAGFSGS  307 (321)
Q Consensus       293 ~~~~~~~~~~g~s~~  307 (321)
                      .|+|.++++.|++..
T Consensus       213 ~wlp~~L~~~g~s~~  227 (368)
T TIGR00903       213 IWLEAALRPAGLEDI  227 (368)
T ss_pred             HHHHHHHHHCCCChH
Confidence            999999988888754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=5e-25  Score=199.52  Aligned_cols=171  Identities=21%  Similarity=0.248  Sum_probs=147.4

Q ss_pred             HHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 020792           44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF  123 (321)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  123 (321)
                      ..+..+...++...+....|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~  107 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF  107 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence            34444444444445567788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHH
Q 020792          124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC  199 (321)
Q Consensus       124 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~  199 (321)
                      +++++.+++.|++.|++.|..++....++.|++|+++|++++++.+.+..+|..++|.+.+.+    +||+.|++.+++.
T Consensus       108 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~  187 (434)
T PRK11663        108 SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIA  187 (434)
T ss_pred             HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            999999999999999999998999999999999999999999999999999999988877655    8999999888776


Q ss_pred             HHHHH-HhhcccCChH
Q 020792          200 LVQLI-GLCFIPESPR  214 (321)
Q Consensus       200 ~~~~~-~~~~~~e~~~  214 (321)
                      ++..+ ..+++||+|+
T Consensus       188 ~~~~~~~~~~~~~~p~  203 (434)
T PRK11663        188 IVVGLFLCWRLRDKPQ  203 (434)
T ss_pred             HHHHHHHHHHcCCCHh
Confidence            55443 3355677764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.94  E-value=2.4e-24  Score=195.04  Aligned_cols=239  Identities=17%  Similarity=0.163  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHHHhhcccccccchhccccccC---CChhhHHHH---HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHH
Q 020792           39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLG---LSVAEYSLF---GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDI  112 (321)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~---~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  112 (321)
                      ..+....++.+.+.++...++...|.+.++++   .+..+.+..   .++..++..++++++|+++||+|||+++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~  101 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34445566677777888777888888988874   555544443   444555555999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhH--------HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhc
Q 020792          113 VCIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA  184 (321)
Q Consensus       113 ~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  184 (321)
                      +++++++++++++++.        .++++|+++|++.|..++...++++|++|+++|+++.++.+.+...|..+++.+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~  181 (432)
T PRK10406        102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV  181 (432)
T ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988763        58899999999999999999999999999999999999988888777776665421


Q ss_pred             ------------chhhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 020792          185 ------------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTET  252 (321)
Q Consensus       185 ------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (321)
                                  ..+||++|++.+++.++.......+||+|++..                          ++       
T Consensus       182 ~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------------------------~~-------  228 (432)
T PRK10406        182 VLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------------------------RA-------  228 (432)
T ss_pred             HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------------------------hh-------
Confidence                        348999999888777666544445666643100                          00       


Q ss_pred             HhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc-CCCCchHHHHHHH
Q 020792          253 LERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGSIGMIAMVV  315 (321)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~  315 (321)
                        .++..+++++++++..+...+.   ..+.....++.+..|.|.++++. |++..+.....++
T Consensus       229 --~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i  287 (432)
T PRK10406        229 --LKEAGSLKGLWRNRRAFIMVLG---FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTA  287 (432)
T ss_pred             --hcccccHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence              0011235566665433322221   22221223566778899988764 8887655444433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.93  E-value=2e-24  Score=193.11  Aligned_cols=156  Identities=13%  Similarity=0.139  Sum_probs=139.8

Q ss_pred             ccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      ...+.+|.+.+++|.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++++++++++++++.++++|++
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  106 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG  106 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccC
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE  211 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e  211 (321)
                      +|++.+..++...+++.|++|+++|+++.++...+..+|..++|.+++.+    +||+.|++.+++.++..+.. .++||
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  186 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999888899999999999999999999999999999999988887654    99999999888776665544 34555


Q ss_pred             C
Q 020792          212 S  212 (321)
Q Consensus       212 ~  212 (321)
                      +
T Consensus       187 ~  187 (390)
T PRK03545        187 L  187 (390)
T ss_pred             C
Confidence            4

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=2.3e-24  Score=194.96  Aligned_cols=252  Identities=21%  Similarity=0.226  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHH
Q 020792           41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI  120 (321)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  120 (321)
                      +..+.+..+..+++.....+..|.+++++|+++.+.+++.+.+.++..+++++.|+++||+|||+++.++.+..+++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~   99 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL   99 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            34455556666666666677888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc----hhhHHHHHHhH
Q 020792          121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----LNWRILALIGT  196 (321)
Q Consensus       121 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~----~~w~~~~~~~~  196 (321)
                      .+++++++.++++|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+...    .+||+.|++..
T Consensus       100 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        100 SGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888877654    38999998755


Q ss_pred             HHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHH
Q 020792          197 IPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG  276 (321)
Q Consensus       197 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (321)
                      ...++.+......||++++..++.+            .++++.++           ..+.....+++.++++..+.....
T Consensus       180 ~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  236 (426)
T PRK12307        180 LPVLLVIYIRARAPESKEWEEAKLS------------GKGKHSQS-----------AWSVFSLSMKGLFNRAQFPLTLCV  236 (426)
T ss_pred             HHHHHHHHHHHHCCCChHHHHhhhh------------cccccccc-----------chhhhhHHHHHHHhhchHHHHHHH
Confidence            4433333222234555432111000            00000000           000011234566666555443333


Q ss_pred             HHHHHHHHhhChhhHHHcHHHHHhhcCCCCchHHHHHHHH
Q 020792          277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVI  316 (321)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  316 (321)
                      .... +......+.+..+.|.++++.|.++.......++.
T Consensus       237 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  275 (426)
T PRK12307        237 FIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAA  275 (426)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            2222 22233334567788999888888877555544443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=4.3e-24  Score=191.96  Aligned_cols=181  Identities=23%  Similarity=0.275  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHH
Q 020792           35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC  114 (321)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  114 (321)
                      ++.+..+++..+..+.++++....+...|.+.+++|.++++.+++.+...++..++.++.|+++||+|||+++..+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            35666667777777777888777788889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHH
Q 020792          115 IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRI  190 (321)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~  190 (321)
                      .++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+    +||+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  170 (406)
T PRK11551         91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH  170 (406)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            999888999999999999999999999999999999999999999999999999999999999998887544    8999


Q ss_pred             HHHHhHHHHHHHHHHh-hcccCChHH
Q 020792          191 LALIGTIPCLVQLIGL-CFIPESPRW  215 (321)
Q Consensus       191 ~~~~~~~~~~~~~~~~-~~~~e~~~~  215 (321)
                      .|++.+++.++..+.. .++||+|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~  196 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAF  196 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            9988776655554433 457887643

>TIGR00895 2A0115 benzoate transport

Probab=99.93  E-value=9.5e-25  Score=195.15  Aligned_cols=268  Identities=21%  Similarity=0.282  Sum_probs=181.2

Q ss_pred             HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS  124 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  124 (321)
                      .+..+..++......+..|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++..+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~  102 (398)
T TIGR00895        23 FLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA  102 (398)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            33344444444455667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHH
Q 020792          125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL  200 (321)
Q Consensus       125 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~  200 (321)
                      ++++.+++.|++.|++.+..++...+++.|++|+++|+++.++...+..+|..+++.+++.+    +|++.+++.++..+
T Consensus       103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  182 (398)
T TIGR00895       103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPL  182 (398)
T ss_pred             cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999888887655    89999888765544


Q ss_pred             HHHH-HhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHH
Q 020792          201 VQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL  279 (321)
Q Consensus       201 ~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (321)
                      +..+ ..+++||++++..++ ++++..+..++........+++  +.++ .+++++..+...+.+++++..+... .+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  257 (398)
T TIGR00895       183 LLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPE-QKATQGTKRSVFKALFQGKTARITV-LLWL  257 (398)
T ss_pred             HHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccc-cccccchhhHHHHHHhcchhHHHHH-HHHH
Confidence            4443 445678887654433 2222222222211110000000  0000 0000000111122233322222222 2222


Q ss_pred             HHHHHhhChhhHHHcHHHHHhhcCCCCchHHHHHHHHH
Q 020792          280 MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQ  317 (321)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  317 (321)
                      ..+......+....|.|.+.++.|.++...+...++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  295 (398)
T TIGR00895       258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFN  295 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            33333344567778888777777998876655544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=2.9e-24  Score=197.62  Aligned_cols=176  Identities=19%  Similarity=0.162  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHH
Q 020792           38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG  117 (321)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  117 (321)
                      +..+..+++..++...+.++++..+|.+.+++|.+.++.+|+.+.+.++..++.+++|+++||+|||++++++.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~   84 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44566777777888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccC-CCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHH
Q 020792          118 WVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILA  192 (321)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~  192 (321)
                      ++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++.++......+|..++|.+++.+    +||+.|
T Consensus        85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f  164 (495)
T PRK14995         85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVF  164 (495)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Confidence            999999999999999999999999988888888787766 678899999999999999999999888776    899999


Q ss_pred             HHhHHHHHHHHHHh-hcccCCh
Q 020792          193 LIGTIPCLVQLIGL-CFIPESP  213 (321)
Q Consensus       193 ~~~~~~~~~~~~~~-~~~~e~~  213 (321)
                      ++...+.++.+++. +++|+++
T Consensus       165 ~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        165 LINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCC
Confidence            98877766655544 4567654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.93  E-value=7.8e-24  Score=193.65  Aligned_cols=154  Identities=15%  Similarity=0.213  Sum_probs=128.5

Q ss_pred             ccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      ...+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++
T Consensus        54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l  133 (476)
T PLN00028         54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF  133 (476)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHH----HHhhc---------chhhHHHHHHhHHHHHHHH
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----YLIGA---------FLNWRILALIGTIPCLVQL  203 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~i~~---------~~~w~~~~~~~~~~~~~~~  203 (321)
                      .|++.+.. .....+++|++|+++|++++++.+....+|..++    |.+..         ..+||+.|++.+++.++..
T Consensus       134 ~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~  212 (476)
T PLN00028        134 IGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMG  212 (476)
T ss_pred             HHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence            99988764 4456688999999999999999876665555544    33322         1379999999888877766


Q ss_pred             HHhhcccC
Q 020792          204 IGLCFIPE  211 (321)
Q Consensus       204 ~~~~~~~e  211 (321)
                      +..+++++
T Consensus       213 l~~~~~~~  220 (476)
T PLN00028        213 ILVLTLGQ  220 (476)
T ss_pred             HHHHHHcC
Confidence            65555543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=1.9e-23  Score=186.73  Aligned_cols=154  Identities=15%  Similarity=0.219  Sum_probs=137.4

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG  138 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  138 (321)
                      .+.+|.+.+++|+++++.++..++..++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|++.|
T Consensus        40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  119 (394)
T PRK10213         40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG  119 (394)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            45677799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh-cccCC
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC-FIPES  212 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~-~~~e~  212 (321)
                      ++.+...+....++.|++|+++|+++.+....+.++|..++|.+++.+    +||+.|++.+++.++..+..+ ..||+
T Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        120 LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999999988888888665    899999988776665544332 35654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=6.5e-24  Score=194.10  Aligned_cols=226  Identities=13%  Similarity=0.071  Sum_probs=166.1

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHhhhhhhhc
Q 020792           68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--KAAWWLDLGRLLVGYGMGLLS  145 (321)
Q Consensus        68 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~  145 (321)
                      +++++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++.++  .+++.+++.|+++|++.+..+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            789999999999999999999999999999999999999999999988888776543  567889999999999999999


Q ss_pred             chhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhhc-ccCChHHHHhc
Q 020792          146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCF-IPESPRWLAKT  219 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~  219 (321)
                      +....+++|++|+++|++++++...+..+|..+++.+.+.+     +||+.|++.+++.++..+.+++ .+|+|+..  +
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~  227 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--P  227 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--C
Confidence            99999999999999999999999999999999888877544     8999999988887776665544 45555310  0


Q ss_pred             CChHHHHHHHHHHhCCCcchHHHHHHHHHHHHH--HhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHH
Q 020792          220 GKGIESEAALQRLRGADADISEEAAEIREYTET--LERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASS  297 (321)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (321)
                      ...++++                 +..++..++  ++.+.+..+++.++++..+..    .+..++.....+.+..|+|.
T Consensus       228 ~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lp~  286 (465)
T TIGR00894       228 CISKFEK-----------------KYINSSLQGQKGSTRQSLPIKAIPKSLPVWAI----WFAIFGHFWLYTILPTYLPT  286 (465)
T ss_pred             CCCHHHH-----------------HHHHhhcccccCCCCCCCCHHHHhcCHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            0000000                 000000000  011122346666665544433    33334444456778889999


Q ss_pred             HHhhc-CCCCchHHHHHHHH
Q 020792          298 IFISA-GFSGSIGMIAMVVI  316 (321)
Q Consensus       298 ~~~~~-g~s~~~~~~~~~~~  316 (321)
                      |+++. |++...++...++.
T Consensus       287 ~l~~~~g~s~~~~g~~~~~~  306 (465)
T TIGR00894       287 FISWVLRVSGKENGLLSSLP  306 (465)
T ss_pred             HHHHHhCcChHHhHHHHHHH
Confidence            99876 99887666655443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.92  E-value=2.1e-23  Score=187.64  Aligned_cols=232  Identities=16%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS  124 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  124 (321)
                      .+..+........+.+.+|.+.+++|.+.++.++..+++.+++.++++++|+++||+|||++++.+.++.+++.+++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            44455555666777888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHH
Q 020792          125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL  200 (321)
Q Consensus       125 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~  200 (321)
                      ++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+    +||+.|++.+++.+
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~  181 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL  181 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999998876777788899999999999999999999999988888888654    89999999888877


Q ss_pred             HHHHHh-hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHH
Q 020792          201 VQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL  279 (321)
Q Consensus       201 ~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (321)
                      +..+.. +++||+++.   +++              +.+..+               ...+++++++++..+...+...+
T Consensus       182 i~~~~~~~~lp~~~~~---~~~--------------~~~~~~---------------~~~~~~~ll~~~~~~~~~l~~~~  229 (413)
T PRK15403        182 IAFVGLLLAMPETVKR---GAV--------------PFSAKS---------------VLRDFRNVFRNRLFLTGAATLSL  229 (413)
T ss_pred             HHHHHHHHhCCCCccc---cCC--------------CCChHH---------------HHHHHHHHHcCHHHHHHHHHHHH
Confidence            766543 457876420   000              000000               01124556666655543333322


Q ss_pred             HHHHHhhChhhHHHcHHHHHhhc-CCCCchHHHH
Q 020792          280 MVLQQFGGVNGIAFYASSIFISA-GFSGSIGMIA  312 (321)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~  312 (321)
                      .    ....+.+..+.|.++++. |+++...++.
T Consensus       230 ~----~~~~~~~~~~~P~~l~~~~g~s~~~~gl~  259 (413)
T PRK15403        230 S----YIPMMSWVAVSPVILIDAGGMTTSQFAWT  259 (413)
T ss_pred             H----HHHHHHHHHhChHHHHHhcCCCHHHHHHH
Confidence            2    223456667789888887 8888755543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=2.7e-23  Score=185.82  Aligned_cols=148  Identities=16%  Similarity=0.192  Sum_probs=130.0

Q ss_pred             cccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 020792           56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRL  135 (321)
Q Consensus        56 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (321)
                      ...++.+|.+++++|+|.++.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            45578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHH
Q 020792          136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLI  204 (321)
Q Consensus       136 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~  204 (321)
                      ++|++.+..++....++.+++| ++|+++++.+..+..+|..+++.++..+     +||+.+.+.++..++..+
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997 7799999999887777766666655443     799887766555444433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=2.4e-23  Score=192.91  Aligned_cols=244  Identities=22%  Similarity=0.248  Sum_probs=182.7

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 020792           67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        67 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      +.++.+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.+..++++|++.+++.|++.|++.++.+.
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            55677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch--hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHH
Q 020792          147 VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIE  224 (321)
Q Consensus       147 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  224 (321)
                      ....++.|++++++|+.+..+ ......++.+++.+++++  +||+.+++..++.++.++..++.||+|+|+..+++.++
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~  269 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE  269 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence            999999999999999999999 666666666666666665  89999999999988887776666799999999999999


Q ss_pred             HHHHHHHHhCCC---cchHHHHHHH--HHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHH
Q 020792          225 SEAALQRLRGAD---ADISEEAAEI--REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF  299 (321)
Q Consensus       225 ~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (321)
                      +.+.+++..+.+   .+..+.....  .+.......+++..+.++++.+..+...+...+.++.     +...+|.-.+.
T Consensus       270 a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-----~~~~y~gl~~~  344 (521)
T KOG0255|consen  270 AIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-----FSLVYYGLSLN  344 (521)
T ss_pred             HHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH-----HhHHHHhhhhh
Confidence            998888875433   1222221111  1111111222335678888877544444444444442     33444433333


Q ss_pred             h-hcCCCCchHHHHHHHH
Q 020792          300 I-SAGFSGSIGMIAMVVI  316 (321)
Q Consensus       300 ~-~~g~s~~~~~~~~~~~  316 (321)
                      . ..|.+......+.+..
T Consensus       345 ~~~lg~~~~~~~~~~~~~  362 (521)
T KOG0255|consen  345 VSGLGGNIYLNFTLSGLV  362 (521)
T ss_pred             hhhcCchHHHHHHHHHHH
Confidence            2 2355555444444443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.91  E-value=1.2e-28  Score=224.50  Aligned_cols=242  Identities=37%  Similarity=0.666  Sum_probs=192.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHhhhhhhhcchhhh
Q 020792           74 AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK---AAWWLDLGRLLVGYGMGLLSYVVPV  150 (321)
Q Consensus        74 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~  150 (321)
                      .+.++..+...+|..+|++++|+++||+|||+.++++.++..++.++.++++   +++.+.++|++.|++.|...+..+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3578999999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             hhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h---hHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChH
Q 020792          151 YIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N---WRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGI  223 (321)
Q Consensus       151 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~---w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  223 (321)
                      ++.|..|+++|+...++.+.+..+|..++..++...    +   ||..+++.+++.++.++..+++||+|+|+..+++.+
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~  205 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDE  205 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccc
Confidence            999999999999999999999999988877666433    4   999999988888877777788999999999999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhh-hhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc
Q 020792          224 ESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKY-AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA  302 (321)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (321)
                      ++++.+++.++.+.+.++.. ++.++.++. ++++..++++++++. +++..+.+.+..+.+..+.+...+|.+.+++..
T Consensus       206 ~A~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~  283 (451)
T PF00083_consen  206 EAEKVLRKLRGKEIEDEEIE-EIKAEKKES-QESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA  283 (451)
T ss_pred             cccccccccccccccccccc-ccccccccc-cccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence            99998888655432222221 111111111 111256777777644 566666677777777777788889999999888


Q ss_pred             CCCCc-hHHHHHHHHH
Q 020792          303 GFSGS-IGMIAMVVIQ  317 (321)
Q Consensus       303 g~s~~-~~~~~~~~~~  317 (321)
                      |.+.. ......++..
T Consensus       284 ~~~~~~~~~~~~~~~~  299 (451)
T PF00083_consen  284 GISNSFLATLILGLVN  299 (451)
T ss_pred             cccccccccccccccc
Confidence            88766 4444443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=1.1e-23  Score=187.76  Aligned_cols=158  Identities=21%  Similarity=0.247  Sum_probs=141.3

Q ss_pred             cccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 020792           56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRL  135 (321)
Q Consensus        56 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (321)
                      .......|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++..+++++++++.++++|+
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV   90 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            33455667799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh-ccc
Q 020792          136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC-FIP  210 (321)
Q Consensus       136 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~-~~~  210 (321)
                      +.|++.+...+....++.|++|+++|+++.++.+....+|..+++.+++.+    +||+.|++.+++.++..+..+ +.|
T Consensus        91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893        91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            999999999999999999999999999999999999999999998888764    899999988887776655543 456


Q ss_pred             CCh
Q 020792          211 ESP  213 (321)
Q Consensus       211 e~~  213 (321)
                      |+|
T Consensus       171 ~~~  173 (399)
T TIGR00893       171 DPP  173 (399)
T ss_pred             CCC
Confidence            554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.3e-23  Score=186.12  Aligned_cols=230  Identities=17%  Similarity=0.188  Sum_probs=182.9

Q ss_pred             ccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhhhh
Q 020792           66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        66 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~  143 (321)
                      ..+++++..+.+++.+.++.|+++++++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            456889999999999999999999999999999999999999999999999999888764  556789999999999999


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhhc-ccCChHHHH
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCF-IPESPRWLA  217 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~  217 (321)
                      .+++...+.+.|.|+++|++..++...+..+|.+++.++++.+     ||+++|++.++++++..+++++ ..|+|..  
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~--  222 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK--  222 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence            9999999999999999999999999999999988877777655     8999999999999888877754 4555531  


Q ss_pred             hcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcc--cccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcH
Q 020792          218 KTGKGIESEAALQRLRGADADISEEAAEIREYTETLERL--SEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYA  295 (321)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (321)
                                       ++.-.++|.+.+++...+++.+  .+.+++++++++..|.+++.    .++...+++.+..|+
T Consensus       223 -----------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~----~f~~~~~~~~l~~y~  281 (466)
T KOG2532|consen  223 -----------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWIS----AFGGNWGFYLLLTYL  281 (466)
T ss_pred             -----------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence                             1111222233333332222222  46789999998766555444    444444688999999


Q ss_pred             HHHHhhc-CCCCchHHHHHHHHHH
Q 020792          296 SSIFISA-GFSGSIGMIAMVVIQV  318 (321)
Q Consensus       296 ~~~~~~~-g~s~~~~~~~~~~~~i  318 (321)
                      |.|++++ |++....++..++..+
T Consensus       282 PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  282 PTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             hHHHHHHhCCChhhhhHHHHHHHH
Confidence            9999998 9998877776666544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=6.8e-23  Score=186.59  Aligned_cols=168  Identities=14%  Similarity=0.149  Sum_probs=135.3

Q ss_pred             HHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-
Q 020792           46 CGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-  124 (321)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-  124 (321)
                      +.......+.......+|++.++ |++..+.++..+...+++.+++++.|+++||+|||++++++.++.+++.+++++. 
T Consensus        36 ~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~  114 (452)
T PRK11273         36 FGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP  114 (452)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhh
Confidence            33343333333345566778888 9999999999999999999999999999999999999999999999998888775 


Q ss_pred             ---hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHH-HHHHhhc----chhhHHHHHHhH
Q 020792          125 ---KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS-MTYLIGA----FLNWRILALIGT  196 (321)
Q Consensus       125 ---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~----~~~w~~~~~~~~  196 (321)
                         .+++.+++.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|.. .+|.+..    ..+||+.|++.+
T Consensus       115 ~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~  194 (452)
T PRK11273        115 WATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA  194 (452)
T ss_pred             cccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence               36778899999999999988888888899999999999999999999988864 4554332    128999999888


Q ss_pred             HHHHHHHH-HhhcccCChH
Q 020792          197 IPCLVQLI-GLCFIPESPR  214 (321)
Q Consensus       197 ~~~~~~~~-~~~~~~e~~~  214 (321)
                      ++.++..+ ..+++||+|+
T Consensus       195 ~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        195 FAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             HHHHHHHHHHHHHccCCHh
Confidence            77666544 4456788764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.91  E-value=6e-24  Score=188.65  Aligned_cols=164  Identities=17%  Similarity=0.197  Sum_probs=141.8

Q ss_pred             HHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHH
Q 020792           50 VFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW  129 (321)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  129 (321)
                      ....+........|.+.+++|++..+.+++.++..++..++.++.|+++||+|||++++++.++.+++.++.+++++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   85 (379)
T TIGR00881         6 AYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWV   85 (379)
T ss_pred             HHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHH
Confidence            33444455566778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHH-Hhhcc----hhhHHHHHHhHHHHHHHHH
Q 020792          130 LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY-LIGAF----LNWRILALIGTIPCLVQLI  204 (321)
Q Consensus       130 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~i~~~----~~w~~~~~~~~~~~~~~~~  204 (321)
                      +++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++| .++..    .+||+.|++.+++.++..+
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (379)
T TIGR00881        86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL  165 (379)
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988888 34433    3899999888877665544


Q ss_pred             Hh-hcccCCh
Q 020792          205 GL-CFIPESP  213 (321)
Q Consensus       205 ~~-~~~~e~~  213 (321)
                      .. ++.||+|
T Consensus       166 ~~~~~~~~~~  175 (379)
T TIGR00881       166 ICFLLLRDSP  175 (379)
T ss_pred             HHheeeCCCc
Confidence            44 4566664

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=3.1e-22  Score=181.41  Aligned_cols=175  Identities=17%  Similarity=0.159  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhhcccccccchh-cccccc--CCChhhHHHHH-----HHHHHHHHHHHHhHHHhhhhccchHHHHHHH
Q 020792           40 STFVAVCGSYVFGSAIGYSSPAQS-GITNDL--GLSVAEYSLFG-----SILTIGAMIGAIMSGKIADYIGRRGTMGFSD  111 (321)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~s~~~~~~~~-----~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  111 (321)
                      ......++.+.+.++...+....| .+.+++  +.++. .+++.     ++..++..+++++.|+++||+|||++++++.
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~  101 (438)
T PRK09952         23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence            445555677777777777666655 344444  66665 34443     3455677899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhH--------HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh
Q 020792          112 IVCIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       112 ~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      ++++++++++++++++.        .++++|+++|++.|..++....++.|++|+++|++..+....+..+|..+++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~  181 (438)
T PRK09952        102 WMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV  181 (438)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999876        5888999999999999999999999999999999999999999999988776543


Q ss_pred             c------------chhhHHHHHHhHHHHHHHHHHhhcccCChHH
Q 020792          184 A------------FLNWRILALIGTIPCLVQLIGLCFIPESPRW  215 (321)
Q Consensus       184 ~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~  215 (321)
                      .            ..+||++|++.+++.++........||+|++
T Consensus       182 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~  225 (438)
T PRK09952        182 SLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF  225 (438)
T ss_pred             HHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            2            2489999998877765544444456777644

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=2e-23  Score=191.84  Aligned_cols=172  Identities=18%  Similarity=0.275  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 020792           42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII  121 (321)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  121 (321)
                      ..+.++.+...++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            34445556666666677788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHH
Q 020792          122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTI  197 (321)
Q Consensus       122 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~  197 (321)
                      +++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..++|.+++++    +||+.|++.+.
T Consensus        85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~  164 (485)
T TIGR00711        85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP  164 (485)
T ss_pred             hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999998888765    89999998887


Q ss_pred             HHHHHHHHh-hcccCCh
Q 020792          198 PCLVQLIGL-CFIPESP  213 (321)
Q Consensus       198 ~~~~~~~~~-~~~~e~~  213 (321)
                      +.++..+.. +++||++
T Consensus       165 ~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       165 IGIIVVVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHHHHHHcCCcc
Confidence            766655544 4456643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.90  E-value=6.5e-25  Score=189.42  Aligned_cols=173  Identities=18%  Similarity=0.254  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHH
Q 020792           40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV  119 (321)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  119 (321)
                      .+...++...+.+.+...+....+.+++.+|++++..|++.+++.+++.+++|+.|+++||+.||+++.+|..++.++.+
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~  113 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF  113 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence            34444555566666666667778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHH
Q 020792          120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALI  194 (321)
Q Consensus       120 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~  194 (321)
                      ..+++..+|++.++|.+.|+|.+...++.+.+++|.+|..+|+++.++++.+..+|..+|.+.+..+     .|||.|+.
T Consensus       114 ~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~  193 (493)
T KOG1330|consen  114 ASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRG  193 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999998888777665     49999999


Q ss_pred             hHHHHHHHHHHhh-cccCC
Q 020792          195 GTIPCLVQLIGLC-FIPES  212 (321)
Q Consensus       195 ~~~~~~~~~~~~~-~~~e~  212 (321)
                      .++++++..++.+ +.+|+
T Consensus       194 ~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  194 SAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             ehHHHHHHHHHHHhhccCc
Confidence            9999888777764 45555

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.90  E-value=6.9e-23  Score=180.21  Aligned_cols=159  Identities=28%  Similarity=0.483  Sum_probs=138.0

Q ss_pred             cccccccchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 020792           54 AIGYSSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL  132 (321)
Q Consensus        54 ~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  132 (321)
                      ......+..| .+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..++++.+.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~   90 (352)
T PF07690_consen   11 GFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLI   90 (352)
T ss_dssp             HHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhh
Confidence            3333456667 789999999999999999999999999999999999999999999999999999666667688889999


Q ss_pred             HHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-h
Q 020792          133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-C  207 (321)
Q Consensus       133 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~  207 (321)
                      .|++.|++.+...+....++.|++|+++|+++.+..+.+..+|..++|.+++.+    +||+.|++.+++.++..++. +
T Consensus        91 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen   91 ARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHC
T ss_pred             hccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhh
Confidence            999999999999999999999999999999999999999999999999888766    79999999998888776643 4


Q ss_pred             cccCC
Q 020792          208 FIPES  212 (321)
Q Consensus       208 ~~~e~  212 (321)
                      +++++
T Consensus       171 ~~~~~  175 (352)
T PF07690_consen  171 FLPEP  175 (352)
T ss_dssp             CC---
T ss_pred             hhhhc
Confidence            44444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=2.7e-22  Score=178.79  Aligned_cols=159  Identities=16%  Similarity=0.275  Sum_probs=141.6

Q ss_pred             cccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 020792           54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG  133 (321)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (321)
                      ......+..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.++.++++.+.+.
T Consensus        20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (385)
T TIGR00710        20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVL   99 (385)
T ss_pred             HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            34445677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hc
Q 020792          134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CF  208 (321)
Q Consensus       134 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~  208 (321)
                      |++.|++.+...+...+++.|++|+++|+++.+..+....+|..+++.+++.+    +||+.+++.+++.++..+.. ++
T Consensus       100 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       100 RFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988888887665    89999998877766655544 44


Q ss_pred             ccCC
Q 020792          209 IPES  212 (321)
Q Consensus       209 ~~e~  212 (321)
                      .||+
T Consensus       180 ~~~~  183 (385)
T TIGR00710       180 LPET  183 (385)
T ss_pred             CCCC
Confidence            5665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.90  E-value=4.6e-22  Score=180.26  Aligned_cols=159  Identities=24%  Similarity=0.296  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHH-HHHH-----HHHHHHHHHhHHHhhhhccchHHHHHHHHH
Q 020792           40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLF-GSIL-----TIGAMIGAIMSGKIADYIGRRGTMGFSDIV  113 (321)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-----~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  113 (321)
                      .....+++.+.+.++...++...|.+.++++.++.+.+.. .+..     .++..+++++.|+++||+|||++++.+.++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            3555666788888888888899999999999888775433 3322     233357889999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhH--------HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhc-
Q 020792          114 CIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA-  184 (321)
Q Consensus       114 ~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~-  184 (321)
                      .+++.++++++++++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.++. 
T Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075         96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876        46889999999999999989999999999999999999988776666655554443 


Q ss_pred             -----------chhhHHHHHHhHHH
Q 020792          185 -----------FLNWRILALIGTIP  198 (321)
Q Consensus       185 -----------~~~w~~~~~~~~~~  198 (321)
                                 ..+||++|++....
T Consensus       176 l~~~~~~~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        176 LNQWLSPAQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             HHHhCCHHHHhccchHHHHHHHHHH
Confidence                       24899999875443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=3.2e-22  Score=178.36  Aligned_cols=164  Identities=18%  Similarity=0.293  Sum_probs=142.4

Q ss_pred             HHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhH
Q 020792           49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW  128 (321)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  128 (321)
                      +..+.......+.+|.+++++|.+..+.+++.+...+++.++++++|+++||+|||+++.++.++.+++.++++++++++
T Consensus        13 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~   92 (382)
T PRK10091         13 FGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYL   92 (382)
T ss_pred             HHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            33333444446678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHH
Q 020792          129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI  204 (321)
Q Consensus       129 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~  204 (321)
                      .+++.|++.|++.+...+....++.|++|+++|+++.+....+..+|..++|.+++.+    +||+.|++.++..++..+
T Consensus        93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~  172 (382)
T PRK10091         93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLA  172 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888889999999999999999999999999988888777554    899999998877665554


Q ss_pred             Hh-hcccCC
Q 020792          205 GL-CFIPES  212 (321)
Q Consensus       205 ~~-~~~~e~  212 (321)
                      .. +++||.
T Consensus       173 ~~~~~lp~~  181 (382)
T PRK10091        173 SIYFWVPDI  181 (382)
T ss_pred             HHHHhCCCC
Confidence            43 456765

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=1.7e-21  Score=179.69  Aligned_cols=177  Identities=24%  Similarity=0.338  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHH
Q 020792           39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW  118 (321)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  118 (321)
                      ..+..+++..+...++.....+..|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   99 (496)
T PRK03893         20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT   99 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34445555666666666667778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHH
Q 020792          119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI  194 (321)
Q Consensus       119 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~  194 (321)
                      ++.+++++++.+++.|++.|++.+..++....++.|++|+++|+++.+....+..+|..++|.+.+.+    +||+.|++
T Consensus       100 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~  179 (496)
T PRK03893        100 LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988877655    89999887


Q ss_pred             hHHHHHHHHHHhhcccCChHH
Q 020792          195 GTIPCLVQLIGLCFIPESPRW  215 (321)
Q Consensus       195 ~~~~~~~~~~~~~~~~e~~~~  215 (321)
                      ..+..++.++....+||++++
T Consensus       180 ~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        180 GILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHhCCCchhh
Confidence            554444443333456776543

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=4e-22  Score=178.47  Aligned_cols=163  Identities=13%  Similarity=0.168  Sum_probs=141.0

Q ss_pred             HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS  124 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  124 (321)
                      .+..+..+......++.+|.+.+++|+|.++.+++.+...+++.+++++.|++.||+|||+++..+.++.+++..+.+++
T Consensus        13 ~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~   92 (394)
T PRK03699         13 FLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS   92 (394)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            44455555555666778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc-----hhhHHHHHHhHHHH
Q 020792          125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF-----LNWRILALIGTIPC  199 (321)
Q Consensus       125 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~~~~~~~~~~  199 (321)
                      ++++.+++.|++.|++.+...+....++.|++|+++|+.+.+..+.+..+|..++|.+.+.     .+||+.|.+.+++.
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~  172 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVY  172 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            9999999999999999998899999999999999999999998888888888887766543     38999999888776


Q ss_pred             HHHHHHhh
Q 020792          200 LVQLIGLC  207 (321)
Q Consensus       200 ~~~~~~~~  207 (321)
                      ++..+..+
T Consensus       173 ~~~~~~~~  180 (394)
T PRK03699        173 VAIFILTL  180 (394)
T ss_pred             HHHHHHHH
Confidence            66554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=9.5e-23  Score=183.63  Aligned_cols=257  Identities=18%  Similarity=0.118  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHHHHhhc-ccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHH
Q 020792           38 VLSTFVAVCGSYVFGSA-IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII  116 (321)
Q Consensus        38 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  116 (321)
                      +.++.+++...+....+ .++..+.+..+.+|.+....+.+.+.+++.++++++.+++|.|.||++-.+.+....+++.+
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence            33334444444443333 23333444457789999999999999999999999999999999999988888888888888


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----------
Q 020792          117 GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------  186 (321)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------  186 (321)
                      ..++....+|++.+++.|+++|+.++..+|....+++.||.+++|+..+++++....+|++++++++..+          
T Consensus       124 ~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  124 FGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence            8888888999999999999999999999999999999999999999999999999888888888887651          


Q ss_pred             hhHHHHHHhHHHHHHHHHHh-hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhh
Q 020792          187 NWRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELF  265 (321)
Q Consensus       187 ~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (321)
                      ||||.|++.+++.++..+.. +++|+.|.... -..++|..-..++.+..+            ....+++.+...+++.+
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~-fl~~~ek~~~~~~~~~~~------------~~~~~~~~~~~~~~~a~  270 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW-FLTDEEKELVVERLRESP------------SGGIENKFKWKGFKEAL  270 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEEEecCChhhcc-ccchHHHHHHHHHHHhcc------------CCCcccccCHHHHHHHH
Confidence            89999999999888776655 56898875210 000111000000100000            00000112334566677


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc-CCCCchHHH
Q 020792          266 QRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGSIGMI  311 (321)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~  311 (321)
                      +++..|+..+..    ++.....+++.+|+|.++++. |+|..++..
T Consensus       271 ~dp~vw~~~l~~----~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~  313 (495)
T KOG2533|consen  271 KDPGVWPFSLCY----FFLKLVNYGFSYWLPLYLKSNGGYSELQANL  313 (495)
T ss_pred             hchhHHHHHHHH----HHHhhccccHHHHHHHHHHcCCCcChHHhcc
Confidence            777666644443    333445678999999999984 676654433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.90  E-value=7.3e-23  Score=192.05  Aligned_cols=259  Identities=16%  Similarity=0.175  Sum_probs=180.3

Q ss_pred             HHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh-
Q 020792           47 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-  125 (321)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-  125 (321)
                      ..+......++....++.++++|+++..+.|++.+.+.++++++.++.+++.||+|||+++.++.++++++++++++.+ 
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf  120 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF  120 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence            3343444456677788899999999999999999999999999999999999999999999999999999999887753 


Q ss_pred             --------------------------------------------------hhHHHHHHHHHHhhhhhhhcchhhhhhhcc
Q 020792          126 --------------------------------------------------AAWWLDLGRLLVGYGMGLLSYVVPVYIAEI  155 (321)
Q Consensus       126 --------------------------------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  155 (321)
                                                                        .+..++++|+++|++.+..++...+++.|+
T Consensus       121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~  200 (633)
T TIGR00805       121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDF  200 (633)
T ss_pred             hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhcc
Confidence                                                              245677899999999999999999999999


Q ss_pred             CCCccchhHHhHHHHHHHHHHHHHHHhhcch--------------------------hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------------------NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       156 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------------------~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      +|+++|+.+.++.+.+..+|..+++++++.+                          +|+..|++.+++.++..+..+++
T Consensus       201 ~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       201 AKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             CCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998887543                          26777888887777766666666


Q ss_pred             cCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChh
Q 020792          210 PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN  289 (321)
Q Consensus       210 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (321)
                      |++.+....+.+.+..++  ......+   ++.    .....+..+.....++++++++..+..    .+..+.....++
T Consensus       281 p~~lp~~~~~~~~~~~~~--~~~~~~~---~~~----~~~~~~~~~~~~~~~~~Ll~n~~f~~~----~l~~~~~~~~~~  347 (633)
T TIGR00805       281 PKALPKEGKRVNVDVHET--EKLEKSE---DKS----RKKNSDITKDFPKIIKRLLCNPIYMLV----ILAQVIDSLAFN  347 (633)
T ss_pred             ccccCCcccccchhhhhh--hcccccc---ccc----chhhhhhHHHHHHHHHHHHcCcHHHHH----HHHHHHHHHHHH
Confidence            665211000000000000  0000000   000    000000000111234556666544333    333333444567


Q ss_pred             hHHHcHHHHHhhc-CCCCchHHHHHHHHHH
Q 020792          290 GIAFYASSIFISA-GFSGSIGMIAMVVIQV  318 (321)
Q Consensus       290 ~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i  318 (321)
                      .+..|+|.|+++. |+++..++.+.++..+
T Consensus       348 ~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i  377 (633)
T TIGR00805       348 GYITFLPKYLENQYGISSAEANFLIGVVNL  377 (633)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHhhhhhh
Confidence            8888999999876 9999888776665443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.89  E-value=1.4e-22  Score=179.78  Aligned_cols=154  Identities=16%  Similarity=0.128  Sum_probs=134.3

Q ss_pred             cccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 020792           58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV  137 (321)
Q Consensus        58 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (321)
                      ..+..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA  101 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh-cccCC
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC-FIPES  212 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~-~~~e~  212 (321)
                      |++.+..++.....+.|++| ++|+++.+....+..+|..+++.+...+    +||+.|++.+++.++..+..+ +++++
T Consensus       102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  180 (377)
T TIGR00890       102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP  180 (377)
T ss_pred             hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            99999888888888999987 5699999999999999887655444333    799999998888777665543 44444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=8.7e-22  Score=177.01  Aligned_cols=179  Identities=20%  Similarity=0.202  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHH
Q 020792           35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC  114 (321)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  114 (321)
                      ++.+.......+..+...+....+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++.++.+..
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45555666666667666666666777888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHH
Q 020792          115 IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRI  190 (321)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~  190 (321)
                      +++.++..++++++.+++.|++.|++.+...+....++.|.+|+++|++..+.......+|..++|.+++.+    +||+
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~  168 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG  168 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence            999999999999999999999999999888888899999999999999888888887778888888776554    8999


Q ss_pred             HHHHhHHHHHHHHHHh-hcccCCh
Q 020792          191 LALIGTIPCLVQLIGL-CFIPESP  213 (321)
Q Consensus       191 ~~~~~~~~~~~~~~~~-~~~~e~~  213 (321)
                      .+++.+++.++..+.. +..||++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9998887777665544 3456653

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.89  E-value=5.9e-22  Score=179.75  Aligned_cols=175  Identities=13%  Similarity=0.109  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHH
Q 020792           39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW  118 (321)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  118 (321)
                      ..+....+................|.+++ +|+++++.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~  105 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM  105 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence            33333344444444444444555666776 59999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHh----hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc-----hhhH
Q 020792          119 VIIVFS----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF-----LNWR  189 (321)
Q Consensus       119 ~~~~~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~  189 (321)
                      ++.+..    ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+...     .+||
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~  185 (438)
T TIGR00712       106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH  185 (438)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence            877654    4667788899999999998888889999999999999999999999999998887765433     3899


Q ss_pred             HHHHHhHHHHHHHHHH-hhcccCChH
Q 020792          190 ILALIGTIPCLVQLIG-LCFIPESPR  214 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~-~~~~~e~~~  214 (321)
                      +.|++.+++.++..+. .+++||+|+
T Consensus       186 ~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       186 AALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            9999988877665544 455677754

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.89  E-value=5.5e-22  Score=175.67  Aligned_cols=155  Identities=21%  Similarity=0.199  Sum_probs=125.0

Q ss_pred             cccchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHH
Q 020792           58 SSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRL  135 (321)
Q Consensus        58 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  135 (321)
                      ..+..| ++++++|++..+.+++.++..+++.+++++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|+
T Consensus        20 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   99 (366)
T TIGR00886        20 FSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRL   99 (366)
T ss_pred             hHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            467777 48999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHh----hcc----------hhhHHHHH-HhHHHHH
Q 020792          136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI----GAF----------LNWRILAL-IGTIPCL  200 (321)
Q Consensus       136 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i----~~~----------~~w~~~~~-~~~~~~~  200 (321)
                      +.|++.+ .++....+++|++|+++|+++.++......+|..+++.+    ...          .+||+.++ ..+++.+
T Consensus       100 ~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       100 FIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            9999855 456678899999999999999999886555555544443    332          26999884 4344443


Q ss_pred             HHHH-HhhcccCCh
Q 020792          201 VQLI-GLCFIPESP  213 (321)
Q Consensus       201 ~~~~-~~~~~~e~~  213 (321)
                      +..+ ...+.+|+|
T Consensus       179 ~~~~~~~~~~~~~~  192 (366)
T TIGR00886       179 LPALLIFFVGADTP  192 (366)
T ss_pred             HHHHHHHHhcccCC
Confidence            3333 334456654

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=2.3e-21  Score=174.02  Aligned_cols=158  Identities=17%  Similarity=0.215  Sum_probs=137.0

Q ss_pred             ccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 020792           55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGR  134 (321)
Q Consensus        55 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (321)
                      ...+.|..|.+++++|.++++.++..+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus        22 ~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  101 (401)
T PRK11043         22 TDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLR  101 (401)
T ss_pred             HHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34446777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhccc
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIP  210 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~  210 (321)
                      ++.|++.+...+...+++.|++|+++|++..+.......+|..++|.+++.+    +||+.|++.+++.++..+..++++
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  181 (401)
T PRK11043        102 FVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLK  181 (401)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999998887887888999999999888888888877788887887777654    899999988877777666555555


Q ss_pred             CC
Q 020792          211 ES  212 (321)
Q Consensus       211 e~  212 (321)
                      |+
T Consensus       182 ~~  183 (401)
T PRK11043        182 PS  183 (401)
T ss_pred             CC
Confidence            54

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.89  E-value=6.8e-22  Score=174.67  Aligned_cols=152  Identities=11%  Similarity=0.091  Sum_probs=134.2

Q ss_pred             cccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh-----hhHHHHH
Q 020792           58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-----AAWWLDL  132 (321)
Q Consensus        58 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~  132 (321)
                      ..+.+|.+..+++.+..+.+++.++..++..++++++|+++||+|||++++.+.++.+++..+..+.+     +++.+++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (365)
T TIGR00900        18 TQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYV   97 (365)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            34556667788899999999999999999999999999999999999999999999888888888777     9999999


Q ss_pred             HHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc
Q 020792          133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       133 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      .|++.|++.+...+...+++.|++|+++|+++.+..+.+..+|..++|.+++.+    +||+.|++.++..++..+..++
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999888665    8999998877766655544443


Q ss_pred             c
Q 020792          209 I  209 (321)
Q Consensus       209 ~  209 (321)
                      +
T Consensus       178 ~  178 (365)
T TIGR00900       178 V  178 (365)
T ss_pred             c
Confidence            3

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=1.8e-21  Score=163.16  Aligned_cols=238  Identities=21%  Similarity=0.280  Sum_probs=182.7

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  140 (321)
                      ..|...+..|.+..+.+++......|..+++..+|.++|++|||+.+.+..+..++..++.+.++|+..+.+.|.+.|+|
T Consensus       100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g  179 (528)
T KOG0253|consen  100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFG  179 (528)
T ss_pred             HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhcc
Confidence            34447788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh----cchhhHHHHHHhHHHHHHHHHHhhcccCChHHH
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AFLNWRILALIGTIPCLVQLIGLCFIPESPRWL  216 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~  216 (321)
                      .|+ .|...++-.|..|..+|...+-.. ..+.+|.++...+.    ..+||||.......+..+.....+++||+|++.
T Consensus       180 ~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  180 VGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY  257 (528)
T ss_pred             CCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh
Confidence            999 888889999999999997776666 77888877766555    444999999888877777777888899999999


Q ss_pred             HhcCChHHHHHHHHHHhCCCcc----------hHHHHHHH----HHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHH
Q 020792          217 AKTGKGIESEAALQRLRGADAD----------ISEEAAEI----REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL  282 (321)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (321)
                      ..+++++++.+.++++.+.|..          ...+++++    .+.+.+..+....+..+++....++..+.....++.
T Consensus       258 ~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfg  337 (528)
T KOG0253|consen  258 LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFG  337 (528)
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHh
Confidence            9999999998888877554421          11111111    111222233445677888876666665555444444


Q ss_pred             HHhhChhhHHHcHHHHHhh
Q 020792          283 QQFGGVNGIAFYASSIFIS  301 (321)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~  301 (321)
                      +.+ .++......+.+++.
T Consensus       338 naf-syyg~VLlttelfqs  355 (528)
T KOG0253|consen  338 NAF-SYYGSVLLTTELFQS  355 (528)
T ss_pred             hHH-HHHHHHHHHHHHHhc
Confidence            333 355555555555543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.88  E-value=1.9e-21  Score=176.96  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=131.8

Q ss_pred             cccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH
Q 020792           56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL-GR  134 (321)
Q Consensus        56 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~  134 (321)
                      ..++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  115 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG  115 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33466778899999999999999999999999999999999999999999999999999999999999999988765 46


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      ++.|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+    +||+.|++.+++.++..+..+++
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            89999988776777788899996 6799999999999999988888777654    89999999888777665554443

>PRK10133 L-fucose transporter; Provisional

Probab=99.88  E-value=5e-21  Score=173.22  Aligned_cols=136  Identities=13%  Similarity=0.166  Sum_probs=118.9

Q ss_pred             HHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HHh
Q 020792           48 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFS  124 (321)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~  124 (321)
                      .+..+.......+..|.+++++|+++.+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++   ..+
T Consensus        35 ~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a  114 (438)
T PRK10133         35 FFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444444555777888999999999999999999999999999999999999999999999999999998775   467


Q ss_pred             hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh
Q 020792          125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       125 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      ++++.++++|++.|++.|...+..+.++.|+.|+++|...++..+..+.+|..+++.++
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999987777666678888888888888887664

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.88  E-value=2.9e-21  Score=169.96  Aligned_cols=158  Identities=13%  Similarity=0.251  Sum_probs=140.1

Q ss_pred             cccchhccccccCCChhh-HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           58 SSPAQSGITNDLGLSVAE-YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        58 ~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      .+...|++.+++|++.++ .|.+.+++..+++++.+++|+++||+|.|+++.++.+.+++...+++++++++.+.+.|++
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~l  124 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVF  124 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566799999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHH---HHhHHHHHHHHHHhhccc
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILA---LIGTIPCLVQLIGLCFIP  210 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~---~~~~~~~~~~~~~~~~~~  210 (321)
                      .|++.|+.+ ....++..|+|+++|+++.++...+..+|.++++++++.+   +||+.+   ++......++++..+++|
T Consensus       125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999 9999999999999999999999999999999999888766   788654   344455556666778888


Q ss_pred             CChHHH
Q 020792          211 ESPRWL  216 (321)
Q Consensus       211 e~~~~~  216 (321)
                      ..++-+
T Consensus       204 ~~~~sl  209 (511)
T TIGR00806       204 RPKRSL  209 (511)
T ss_pred             CCchhh
Confidence            665533

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.88  E-value=2.6e-21  Score=172.11  Aligned_cols=156  Identities=22%  Similarity=0.342  Sum_probs=140.1

Q ss_pred             ccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      .+.|.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++..++.+.++++.+.+.|++
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   88 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL   88 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            34577888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccC
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE  211 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e  211 (321)
                      .|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+    +||+.|++.+++.++..+.. +++||
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999998999999999999999999999999999999999988887655    89999998887776655444 45676


Q ss_pred             C
Q 020792          212 S  212 (321)
Q Consensus       212 ~  212 (321)
                      +
T Consensus       169 ~  169 (377)
T PRK11102        169 T  169 (377)
T ss_pred             c
Confidence            5

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=8.5e-21  Score=169.92  Aligned_cols=157  Identities=17%  Similarity=0.239  Sum_probs=137.1

Q ss_pred             ccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      ...+.+|.+.+++|+++.+.+++.+.+.++..++++++|+++||+|||+++.++.++.+++.+++.+.++++.+++.|++
T Consensus        26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (394)
T PRK11652         26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAI  105 (394)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHH-hhcccC
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG-LCFIPE  211 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e  211 (321)
                      .|++.+...+....+..|.+++++|+.+.+..+.+..+|..++|.+++.+    +||+.|++.++..++..+. .++.||
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99998888888888899999998899999999999998888888877654    8999999887766554443 355677


Q ss_pred             Ch
Q 020792          212 SP  213 (321)
Q Consensus       212 ~~  213 (321)
                      ++
T Consensus       186 ~~  187 (394)
T PRK11652        186 TR  187 (394)
T ss_pred             cC
Confidence            53

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=9.1e-21  Score=169.59  Aligned_cols=154  Identities=20%  Similarity=0.257  Sum_probs=137.5

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG  138 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  138 (321)
                      .+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++..++..+++.+.+++.|++.|
T Consensus        23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  102 (392)
T PRK10473         23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG  102 (392)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            46688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      ++.+..++....++.|++|+++|+++.+..+....+|..++|.++..+    +|++.+++.+++.++..+.. +++||+
T Consensus       103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999988999999999999999999999999999888888888887654    89999998887766655544 456665

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=1.8e-20  Score=167.00  Aligned_cols=142  Identities=15%  Similarity=0.224  Sum_probs=129.2

Q ss_pred             HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS  124 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  124 (321)
                      .++.+..........+.+|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+++++
T Consensus        12 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~   91 (381)
T PRK03633         12 LCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM   91 (381)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555666677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       125 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ++++.++++|++.|++.+...+.....+.+..++++|+++++..+.+..+|..++|.+++.+
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999988888888888999999999999999999999999999998776

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.87  E-value=1.7e-20  Score=167.77  Aligned_cols=200  Identities=17%  Similarity=0.121  Sum_probs=149.7

Q ss_pred             cccchhcccc-ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-----hhhHHHH
Q 020792           58 SSPAQSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----KAAWWLD  131 (321)
Q Consensus        58 ~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~  131 (321)
                      .++..+.+.+ ++|+|.+|.+++.++..+++.++.++.|++.||+|.|+++.++.++.++.++..+++     ++++.++
T Consensus        53 ~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~ll  132 (462)
T PRK15034         53 FSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFI  132 (462)
T ss_pred             HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH
Confidence            3555666655 899999999999999999999999999999999999999999999999999998886     8999999


Q ss_pred             HHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHH----HHHHhhc------------------chhhH
Q 020792          132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS----MTYLIGA------------------FLNWR  189 (321)
Q Consensus       132 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~----~~~~i~~------------------~~~w~  189 (321)
                      +.|++.|++ +..++.....+++++|+++||++.++.....++|..    +.|.+..                  ..+||
T Consensus       133 i~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~  211 (462)
T PRK15034        133 VIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLA  211 (462)
T ss_pred             HHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHH
Confidence            999999998 778999999999999999999999999655555554    4443321                  22477


Q ss_pred             HHHHHhHHHHHHHHHHhhcc-cCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhh
Q 020792          190 ILALIGTIPCLVQLIGLCFI-PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK  268 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (321)
                      .+.++..++.++..+..++. ++.|+                                       ++....+..+.+|++
T Consensus       212 ~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------------------------~~~~~~~~~~vlk~~  252 (462)
T PRK15034        212 NAAWIWVPLLAIATIAAWSGMNDIAS---------------------------------------SRASIADQLPVLQRL  252 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------------cccCHHHHHHHhCCC
Confidence            77777777666665555443 33220                                       000111244566766


Q ss_pred             hhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhh
Q 020792          269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS  301 (321)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (321)
                      ..|...+    ..++.++++.++.++.|+++++
T Consensus       253 ~~Wllsl----ly~~tFG~fvg~s~~lp~~~~~  281 (462)
T PRK15034        253 HLWLLSL----LYLATFGSFIGFSAGFAMLAKT  281 (462)
T ss_pred             chhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            6554333    3344555577788889988866

>PRK10504 putative transporter; Provisional

Probab=99.87  E-value=1.8e-20  Score=171.70  Aligned_cols=166  Identities=19%  Similarity=0.224  Sum_probs=142.3

Q ss_pred             HHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhh
Q 020792           47 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA  126 (321)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  126 (321)
                      ..+....+.....+..|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+++.++++
T Consensus        18 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   97 (471)
T PRK10504         18 GFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT   97 (471)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444444455567788899999999999999999999999999999999999999999999999999999888888999


Q ss_pred             hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHH
Q 020792          127 AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ  202 (321)
Q Consensus       127 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~  202 (321)
                      .+.+++.|++.|++.+...+....++.|++|+++|+++.+....+..+|..++|.+++.+    +||+.|++......+.
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~  177 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG  177 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988888887655    8999999877766655


Q ss_pred             HHHhh-cccCC
Q 020792          203 LIGLC-FIPES  212 (321)
Q Consensus       203 ~~~~~-~~~e~  212 (321)
                      .+... ..|+.
T Consensus       178 ~~~~~~~~~~~  188 (471)
T PRK10504        178 AIATLMLMPNY  188 (471)
T ss_pred             HHHHHHhCCCc
Confidence            55443 34443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.87  E-value=7.8e-22  Score=169.94  Aligned_cols=269  Identities=19%  Similarity=0.182  Sum_probs=191.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhcccccccchhcccccc--------CCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccc
Q 020792           32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL--------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR  103 (321)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr  103 (321)
                      ...|+.+..+.++.++.+.+.|+...++...|.+...+        +++....+.+..+..+|.++|++++|++.||+||
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            34678888889999999999999999888877554432        2456677899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHH
Q 020792          104 RGTMGFSDIVCIIGWVIIVFSK-------AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGV  176 (321)
Q Consensus       104 r~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  176 (321)
                      |+++...++++++++++++++.       -.+++.+.|+++|+|.|+.||...++.+|....+.||...+......++|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            9999999999999999777632       236788899999999999999999999999999999887777655555554


Q ss_pred             HHHHHhh----cch---------------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCh-HHHHHHHHHHhCCC
Q 020792          177 SMTYLIG----AFL---------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKG-IESEAALQRLRGAD  236 (321)
Q Consensus       177 ~~~~~i~----~~~---------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~  236 (321)
                      ..+.+++    ..+               -||..+.+.++++++.+...+.+||++++..-..++ +++.   .+..+..
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~  270 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVL  270 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccc
Confidence            4444333    222               399999998888888888888899998875222211 1111   1111110


Q ss_pred             cchHHHHHHHHHHHHHHhcccccchhhhhhhhhhh--HHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCc
Q 020792          237 ADISEEAAEIREYTETLERLSEGGILELFQRKYAH--SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS  307 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  307 (321)
                         +...++.++. +.....++.+.....+....|  +.++..+..++..-..++..+.+...+++..|+.+.
T Consensus       271 ---~~~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~  339 (538)
T KOG0252|consen  271 ---SVDIEAESTA-ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPS  339 (538)
T ss_pred             ---ccccchhhcc-ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCC
Confidence               1000000000 111111122222222222223  567777888888888899999999999998887655

>TIGR00896 CynX cyanate transporter

Probab=99.86  E-value=2e-20  Score=165.17  Aligned_cols=222  Identities=19%  Similarity=0.273  Sum_probs=161.0

Q ss_pred             ccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 020792           55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGR  134 (321)
Q Consensus        55 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (321)
                      .....+.+|.+.+++|++.++.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+.. ..++.+.+++.|
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~   94 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT   94 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence            3455788899999999999999999999999999999999999999999999999998888887776 678888999999


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch------hhHHHHHHhHHHHHHHHHHhhc
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      ++.|++.+...+..+.++.|++| ++|+++.+..+.+..+|..+++.+...+      +||+.|.+.+++.++...  .+
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~  171 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AW  171 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HH
Confidence            99999999888888889999986 5799999999999888888887766544      388888776654443322  23


Q ss_pred             ccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhCh
Q 020792          209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV  288 (321)
Q Consensus       209 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (321)
                      +|+.++    +.+             ++                 ++......++.+|++..+...+...+    ....+
T Consensus       172 ~~~~~~----~~~-------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  213 (355)
T TIGR00896       172 IPQVRR----RVA-------------AN-----------------QTTTRLTPVRIWRSPLAWQVTVFFGL----QSGLY  213 (355)
T ss_pred             hhhhcc----ccC-------------CC-----------------CCCCCCCCchhhcCHhHHHHHHHHHH----HHHHH
Confidence            343311    000             00                 00011223455665554433322222    22234


Q ss_pred             hhHHHcHHHHHhhcCCCCchHHHHHHHHHH
Q 020792          289 NGIAFYASSIFISAGFSGSIGMIAMVVIQV  318 (321)
Q Consensus       289 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i  318 (321)
                      +....|.|.++++.|.+....+...++..+
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~  243 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQL  243 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            566778899998889988766655555433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.86  E-value=3.2e-20  Score=166.54  Aligned_cols=164  Identities=14%  Similarity=0.124  Sum_probs=140.8

Q ss_pred             HHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 020792           43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV  122 (321)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  122 (321)
                      .++...+..++..+...+.+|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||++++++.++.+++..+..
T Consensus         7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~   86 (410)
T TIGR00885         7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW   86 (410)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            33444555566666778889999999999999999999999999999999999999999999999999999999988764


Q ss_pred             H---hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-------------
Q 020792          123 F---SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-------------  186 (321)
Q Consensus       123 ~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-------------  186 (321)
                      .   .++++.+++.|++.|++.|...+....++.+..|+++|++..++.+...++|..++|.++..+             
T Consensus        87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~  166 (410)
T TIGR00885        87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL  166 (410)
T ss_pred             HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence            4   358899999999999999999999999999999999999999999999999988888776433             


Q ss_pred             -----------------hhHHHHHHhHHHHHHHHHHh
Q 020792          187 -----------------NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       187 -----------------~w~~~~~~~~~~~~~~~~~~  206 (321)
                                       +||++|++.+++.++..+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             49999998887766554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.86  E-value=6.4e-20  Score=164.52  Aligned_cols=147  Identities=19%  Similarity=0.258  Sum_probs=123.2

Q ss_pred             cccchhc-cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh--------hhhH
Q 020792           58 SSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--------KAAW  128 (321)
Q Consensus        58 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~  128 (321)
                      ..+.+|. +++++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++...+.++        .+++
T Consensus        34 ~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (399)
T PRK05122         34 PLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLL  113 (399)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Confidence            3455564 678999999999999999999999999999999999999999999998888776655442        2566


Q ss_pred             HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHH
Q 020792          129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI  204 (321)
Q Consensus       129 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~  204 (321)
                      .+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+    +|++.+++..+..++..+
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  193 (399)
T PRK05122        114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL  193 (399)
T ss_pred             HHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999998888888887777777554    899888776665544433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=5e-20  Score=164.72  Aligned_cols=149  Identities=15%  Similarity=0.146  Sum_probs=125.1

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM  141 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  141 (321)
                      .+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.+++.+..+.   ++.|+++|++.
T Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~  102 (393)
T PRK11195         26 AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGA  102 (393)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            334567889999999999999999999999999999999999999999999998888877776653   67899999999


Q ss_pred             hhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhhcccCCh
Q 020792          142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPESP  213 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~~~~e~~  213 (321)
                      +...|...+++.|++|+++|++++++......+|..++|.+++.+   .|+..+.+.+...++..+..+.+||++
T Consensus       103 a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        103 AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999877   445555544444344444445677764

>PRK12382 putative transporter; Provisional

Probab=99.86  E-value=1.4e-19  Score=161.89  Aligned_cols=144  Identities=17%  Similarity=0.211  Sum_probs=119.8

Q ss_pred             ccccchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HH-----hhhh
Q 020792           57 YSSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VF-----SKAA  127 (321)
Q Consensus        57 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-----~~~~  127 (321)
                      ...+.+| ++++++|+|..+.|++.+++.+++.++++++|+++||+|||++++.+.+...++.+..   +.     .+++
T Consensus        33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (392)
T PRK12382         33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF  112 (392)
T ss_pred             HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence            3355566 3678999999999999999999999999999999999999999999888776654432   11     3578


Q ss_pred             HHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHH
Q 020792          128 WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL  200 (321)
Q Consensus       128 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~  200 (321)
                      +.+++.|+++|++.+...+...+++.|++|+++|+++++....+..+|..++|.+++.+    +|++.+.+..+..+
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  189 (392)
T PRK12382        113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPL  189 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            88999999999999988888889999999999999999999998888888888877654    88877665544433

>PRK10054 putative transporter; Provisional

Probab=99.86  E-value=2.2e-20  Score=167.13  Aligned_cols=149  Identities=15%  Similarity=0.171  Sum_probs=131.7

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      ++++++|++..+.|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.++.++++.++++|.+.|.+.+.
T Consensus        33 ~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  112 (395)
T PRK10054         33 YLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSV  112 (395)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999988889999999888899998888777


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      ..+....+..|..|+++|+++.++.+...++|..++|.+++.+   +|+.+|++.+++.++..+.. +++||+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        113 FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7888899999999999999999999999999999999888776   89999998877766665444 345554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=2.4e-20  Score=159.97  Aligned_cols=222  Identities=21%  Similarity=0.248  Sum_probs=168.9

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA---WWLDLGRL  135 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  135 (321)
                      ++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+++.+.   +.+++++.
T Consensus        34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl  113 (417)
T COG2223          34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL  113 (417)
T ss_pred             HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            455556889999999999999999999999999999999999999999999999999999998887554   49999999


Q ss_pred             HHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHH----HHHHHhhcchh---hHHHHHHhHHHHHHHHHHh-h
Q 020792          136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGV----SMTYLIGAFLN---WRILALIGTIPCLVQLIGL-C  207 (321)
Q Consensus       136 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~----~~~~~i~~~~~---w~~~~~~~~~~~~~~~~~~-~  207 (321)
                      ++|++ |..+.+...+++++||+|++|.++|++. ..++|.    .++|.+....+   |+.+..+..+..++..+.. +
T Consensus       114 l~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~  191 (417)
T COG2223         114 LLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL  191 (417)
T ss_pred             HHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 5679999999999999999999999997 656664    45666666667   9988888777766655555 4


Q ss_pred             cccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhC
Q 020792          208 FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGG  287 (321)
Q Consensus       208 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (321)
                      ...+.|......+                                  +..+..++..++++..|.    +++..+..+++
T Consensus       192 ~~~d~p~~r~~~~----------------------------------~~~~~~~~~v~~~~~~W~----lsllY~~tFG~  233 (417)
T COG2223         192 GMNDVPEHRASVK----------------------------------PQLPAQLKAVFSNKDTWL----LSLLYFATFGG  233 (417)
T ss_pred             HhCCChhhhcccc----------------------------------ccchhHHHHHhcCcchHH----HHHHHHHHHHH
Confidence            4554442100000                                  000022444555555444    33444445556


Q ss_pred             hhhHHHcHHHHHhhc-CCCCchHHHHHHHHHHhc
Q 020792          288 VNGIAFYASSIFISA-GFSGSIGMIAMVVIQVID  320 (321)
Q Consensus       288 ~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~g  320 (321)
                      +.++..++|.|+++. |+++.+++.....+.++|
T Consensus       234 Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g  267 (417)
T COG2223         234 FVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIG  267 (417)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence            889999999999988 999988877766666554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.86  E-value=8.9e-20  Score=163.48  Aligned_cols=148  Identities=18%  Similarity=0.301  Sum_probs=132.3

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      ++.+++|+|..+.|++.+...+...+.+++.|+++||+|||+++..+.++.+++.+++.+.++.+.+++.|++.|++.+.
T Consensus        36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~  115 (400)
T PRK11646         36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTL  115 (400)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHh-hcccC
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGL-CFIPE  211 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~-~~~~e  211 (321)
                      ..+...+++.|++|+++|+++.++.+....+|..++|.+++.+   +|++.|++.+...++..+.. ++.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            8888899999999999999999999999999999999888776   89999998877666554433 44454

>TIGR00897 2A0118 polyol permease family

Probab=99.85  E-value=7.3e-20  Score=164.26  Aligned_cols=221  Identities=17%  Similarity=0.074  Sum_probs=150.6

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH---H-hhhhHHHHHHHHHH
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---F-SKAAWWLDLGRLLV  137 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~  137 (321)
                      ++.+.+++|.++.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+++..++.   . ..+++.+++.|++.
T Consensus        36 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~  115 (402)
T TIGR00897        36 LSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR  115 (402)
T ss_pred             HHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence            3445578999999999999999999999999999999999999999999999888876543   3 25788888999999


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHH-HHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccC
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGV-SMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE  211 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e  211 (321)
                      |++.+...+....++.+++|+++|++++++.+.+.++|. .++|.+++.+    +|+..++......++..+.. ++.++
T Consensus       116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       116 GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD  195 (402)
T ss_pred             HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999888777778888999999999999999999999986 5778776543    66555444333333333332 33333


Q ss_pred             ChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhH
Q 020792          212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGI  291 (321)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (321)
                      .++.   +.++           +++     +.++           ....+++++|++..+...+.    .+......+.+
T Consensus       196 ~~~~---~~~~-----------~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  241 (402)
T TIGR00897       196 IFTP---QHMQ-----------TRE-----KFSE-----------LGKAATILFTNPNVLLGGMV----RIINTIGLFGF  241 (402)
T ss_pred             CCCc---cccc-----------CCc-----chhh-----------HHHHHHHHHcChhHHHHHHH----HHHHHHHHHHH
Confidence            2110   0000           000     0000           00113345666554433322    22233345677


Q ss_pred             HHcHHHHHhhcCCCCchHHHHHHHH
Q 020792          292 AFYASSIFISAGFSGSIGMIAMVVI  316 (321)
Q Consensus       292 ~~~~~~~~~~~g~s~~~~~~~~~~~  316 (321)
                      ..|.|.+.++.|++..+.....++.
T Consensus       242 ~~~~p~~~~~~g~s~~~~~~~~~~~  266 (402)
T TIGR00897       242 AVFLPMFVAELGFSTSEWLQIWGTF  266 (402)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHH
Confidence            8899999988899887665555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.84  E-value=2.3e-19  Score=159.40  Aligned_cols=162  Identities=14%  Similarity=0.178  Sum_probs=127.2

Q ss_pred             hhcccccccchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHH-HHHHHHHHHHHHHHhhhhHH
Q 020792           52 GSAIGYSSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGF-SDIVCIIGWVIIVFSKAAWW  129 (321)
Q Consensus        52 ~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~  129 (321)
                      +...+...+.+| ++++++|.|..+.|++.+.+.++..+.+++.|+++||+|||+.+++ +.+..+++..+++++++++.
T Consensus        10 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (375)
T TIGR00899        10 GIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFL   89 (375)
T ss_pred             HHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            333334455555 4678999999999999999999999999999999999999887654 55666677778888999999


Q ss_pred             HHHHHHHHhhhhhhhcchhhhhhhccCCCccchhH--HhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHH
Q 020792          130 LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGF--TTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL  203 (321)
Q Consensus       130 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~  203 (321)
                      +++.|++.|.+.+...+....+..|+.|++.|+..  .+....+.++|..++|.+++.+    +||+.|++.+++.++..
T Consensus        90 l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~  169 (375)
T TIGR00899        90 LLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCG  169 (375)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999888777788888888999887777643  5666777777877777776554    89999999888766665


Q ss_pred             HHh-hcccCCh
Q 020792          204 IGL-CFIPESP  213 (321)
Q Consensus       204 ~~~-~~~~e~~  213 (321)
                      +.. +++||.|
T Consensus       170 ~~~~~~~~~~~  180 (375)
T TIGR00899       170 VLVWLFLPSYP  180 (375)
T ss_pred             HHHHHhCCCcc
Confidence            554 4477765

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.84  E-value=3.9e-19  Score=158.57  Aligned_cols=143  Identities=25%  Similarity=0.332  Sum_probs=115.1

Q ss_pred             CChhhHHHHHHH-----HHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHH
Q 020792           71 LSVAEYSLFGSI-----LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW--------WLDLGRLLV  137 (321)
Q Consensus        71 ~s~~~~~~~~~~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~  137 (321)
                      .++.+.+...+.     ..++..+++++.|+++||+|||+++.++.++.+++.++++++++++        .+++.|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            445555554433     3334457899999999999999999999999999999999988764        478889999


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhc------------chhhHHHHHHhHHHHHHHHHH
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA------------FLNWRILALIGTIPCLVQLIG  205 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~------------~~~w~~~~~~~~~~~~~~~~~  205 (321)
                      |++.+...+....++.|++|+++|++..+....+..+|..+++.++.            ..+||+.|++.+++.++..+.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888887653            237999998877766665554


Q ss_pred             hhcccCCh
Q 020792          206 LCFIPESP  213 (321)
Q Consensus       206 ~~~~~e~~  213 (321)
                      ....||++
T Consensus       187 ~~~~~~~~  194 (394)
T TIGR00883       187 RRNLEETP  194 (394)
T ss_pred             HHhcCCCh
Confidence            45566654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.84  E-value=4.2e-19  Score=155.78  Aligned_cols=163  Identities=31%  Similarity=0.506  Sum_probs=144.4

Q ss_pred             HHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 020792           46 CGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK  125 (321)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  125 (321)
                      +..+..........+..|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~   85 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS   85 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc
Confidence            33444455555567777888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHH
Q 020792          126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV  201 (321)
Q Consensus       126 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~  201 (321)
                      +++.+.+.|++.|++.+...+...+++.|++|+++|++..+..+....+|..++|.+++.+    +|++.+++.+++.++
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL  165 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888766    699999988877776


Q ss_pred             HHHHhhc
Q 020792          202 QLIGLCF  208 (321)
Q Consensus       202 ~~~~~~~  208 (321)
                      ..+..++
T Consensus       166 ~~~~~~~  172 (352)
T cd06174         166 LALLLLF  172 (352)
T ss_pred             HHHHHHH
Confidence            6655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.83  E-value=1.3e-19  Score=163.56  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=131.2

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWLDLG  133 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~  133 (321)
                      .+.+|.+.++++.+..+.|++.+...++..+++++.|+++||+|||+++..+.++.+++....+.     .++++.+.+.
T Consensus        37 ~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  116 (417)
T PRK10489         37 GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLL  116 (417)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            45566677888889999999999999999999999999999999999998888777776655432     4677888899


Q ss_pred             HHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       134 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      |++.|++.+...+...+++.|+.|+++|+++.++.+.+..+|..++|.+++.+    +|++.+++.++..++..+..+.+
T Consensus       117 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (417)
T PRK10489        117 GLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL  196 (417)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence            99999998888888899999999999999999999999999999999888765    79999988777776666666667


Q ss_pred             cCCh
Q 020792          210 PESP  213 (321)
Q Consensus       210 ~e~~  213 (321)
                      |+++
T Consensus       197 ~~~~  200 (417)
T PRK10489        197 PALP  200 (417)
T ss_pred             CCCC
Confidence            7653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.83  E-value=1.2e-18  Score=156.64  Aligned_cols=163  Identities=21%  Similarity=0.190  Sum_probs=135.2

Q ss_pred             HHHhhcccccccchhccccccCCChhh-----HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q 020792           49 YVFGSAIGYSSPAQSGITNDLGLSVAE-----YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF  123 (321)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  123 (321)
                      ++.+.......+.+|.+.+++|++..+     .+++.++..++..++.+++|+++||+|||+++..+.+..+++.+++.+
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  103 (408)
T PRK09874         24 FLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL  103 (408)
T ss_pred             HHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH
Confidence            333344444567788888889988654     488999999999999999999999999999999999999999988888


Q ss_pred             hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHH
Q 020792          124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC  199 (321)
Q Consensus       124 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~  199 (321)
                      .++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.+..+.+..+|..++|.+++.+    +||+.|++.+++.
T Consensus       104 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  182 (408)
T PRK09874        104 AQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVL  182 (408)
T ss_pred             HhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            9999999999999999854 5677778899999999999999999999999988888887654    8999999888776


Q ss_pred             HHHHHHh-hcccCC
Q 020792          200 LVQLIGL-CFIPES  212 (321)
Q Consensus       200 ~~~~~~~-~~~~e~  212 (321)
                      ++..+.. +++||+
T Consensus       183 ~~~~~~~~~~~~~~  196 (408)
T PRK09874        183 FLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHhccC
Confidence            6655544 345554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.81  E-value=1.6e-18  Score=153.12  Aligned_cols=224  Identities=15%  Similarity=0.133  Sum_probs=153.0

Q ss_pred             ccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchHH-HHHHHHHHHHHHHHHHHh---hhh
Q 020792           57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRGT-MGFSDIVCIIGWVIIVFS---KAA  127 (321)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~  127 (321)
                      ...+..|.+.+++|+|.++.++..+. .+...+ .+++|+++||+     |||+. ++.+.++.+++....++.   .+.
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            34566778899999999999999755 444444 89999999998     89887 466677777776666665   455


Q ss_pred             HHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h--------hHHHHHHh
Q 020792          128 WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N--------WRILALIG  195 (321)
Q Consensus       128 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~--------w~~~~~~~  195 (321)
                      +.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+    +        ||..|++.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~  163 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT  163 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence            66777777888888888888999999999999999999999999999999888887544    6        99999988


Q ss_pred             HHHHHHHHHHhhc-ccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Q 020792          196 TIPCLVQLIGLCF-IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLI  274 (321)
Q Consensus       196 ~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (321)
                      ++..++..+..++ .||+++.     ++               +.+++    +++       ....++++++++..++.+
T Consensus       164 ai~~l~~~~~~~~~~~e~~~~-----~~---------------~~~~~----~~~-------~~~~~~~~~~~~~~~~~~  212 (356)
T TIGR00901       164 ALLILPGLLVTLFLAKEPQED-----AS---------------VPKPL----TQA-------VLKPIREFFQRKNMIQAL  212 (356)
T ss_pred             HHHHHHHHHHHHHhccCCCcc-----cc---------------cchhH----HHH-------HHHHHHHHHHhcCchHHH
Confidence            8877766655443 4554210     00               00000    000       011244555554422222


Q ss_pred             HHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCchHHHHHH
Q 020792          275 VGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMV  314 (321)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  314 (321)
                      .......+. ....+....+.|.++++.|+++.+.+.+.+
T Consensus       213 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~  251 (356)
T TIGR00901       213 LLLLLIVLY-KLGDSAATVLTTLFLLDMGFSKEEIALVAK  251 (356)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence            222222222 223456677788888888988876655444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.1e-17  Score=140.82  Aligned_cols=240  Identities=19%  Similarity=0.215  Sum_probs=191.5

Q ss_pred             HHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHH
Q 020792           38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG  117 (321)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  117 (321)
                      +..+..+.+..+.....++.++|.++.+++++|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45555566667777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh----cch-hhHHHH
Q 020792          118 WVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AFL-NWRILA  192 (321)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~~-~w~~~~  192 (321)
                      ..+.... +.+.++.+..+.|.+.+..+...+..+-+.||+| -+.++++|....++|+.+++.+.    ... +||...
T Consensus        91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL  168 (395)
T COG2807          91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL  168 (395)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence            9998887 7788899999999999999999999999999965 58999999888888766665444    444 799999


Q ss_pred             HHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Q 020792          193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS  272 (321)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (321)
                      .+-+.+++++++.++  |...+     .+                             ....+.+..+-..+++++.-|.
T Consensus       169 ~~WAl~allAl~~Wl--Pq~~r-----~~-----------------------------~~~~~~~~~~~~~vw~~~~aW~  212 (395)
T COG2807         169 GFWALLALLALLIWL--PQALR-----EQ-----------------------------AASIATKLVSVRKVWRSPLAWQ  212 (395)
T ss_pred             HHHHHHHHHHHHHHh--hhccc-----cc-----------------------------ccccccccccccccccCchhHH
Confidence            988888888877664  32110     00                             0001112223345777776666


Q ss_pred             HHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCchHHHHHHHHHHh
Q 020792          273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVI  319 (321)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~  319 (321)
                      +.+-+.+    +...+|....|+|.++.|.|+|..+++.+.++.++.
T Consensus       213 vtLfmGl----qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~  255 (395)
T COG2807         213 VTLFMGL----QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLA  255 (395)
T ss_pred             HHHHHHh----hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHH
Confidence            5554443    444588999999999999999999999888877765

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.80  E-value=6.5e-19  Score=160.93  Aligned_cols=180  Identities=18%  Similarity=0.259  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH
Q 020792           34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV  113 (321)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  113 (321)
                      .++.+..+...++......+........++.+..++|- .....|+.+...++..++.++.|+++|.||||++++.+.++
T Consensus        39 s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l  117 (599)
T PF06609_consen   39 SPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLL  117 (599)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Confidence            34444444444444444445555556677889999985 46778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhH
Q 020792          114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWR  189 (321)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~  189 (321)
                      .++++++++.++|...++++..+.|++.|... .....++|..|.|.|....++...........++.++..+    +||
T Consensus       118 ~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR  196 (599)
T PF06609_consen  118 GVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR  196 (599)
T ss_pred             HHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence            99999999999999999999999999977665 4566689999999998777766665555444556666444    899


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCChHH
Q 020792          190 ILALIGTIPCLVQLIGLCFIPESPRW  215 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~~~~  215 (321)
                      |.|++.++...+.++..+++..+|++
T Consensus       197 w~~~~~~i~~~i~~vl~~~fY~PP~~  222 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIFFFYFPPPR  222 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            99999888877766655444444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.80  E-value=1.3e-18  Score=160.04  Aligned_cols=170  Identities=16%  Similarity=0.146  Sum_probs=130.2

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHH-H--HHhhhhHHHHHHHHHHhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI-I--VFSKAAWWLDLGRLLVGYGM  141 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~G~~~  141 (321)
                      +.+.+|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++... .  ..+++...+++++++.|++.
T Consensus       277 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  356 (490)
T PRK10642        277 LSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVIL  356 (490)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            55678999888888888899999999999999999999999988887654433322 2  22345667778889888887


Q ss_pred             hhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhhcccCChHHH
Q 020792          142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFIPESPRWL  216 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~  216 (321)
                      +...+....++.|.+|++.|+++.+..+....+++.++|.+.+++     +|+.++++..+++++.++..+++||+|+++
T Consensus       357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~  436 (490)
T PRK10642        357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            777777888899999999999998874444445556677666554     477777766677777776667789999987


Q ss_pred             Hhc-----CChHHHHHHHHHHhC
Q 020792          217 AKT-----GKGIESEAALQRLRG  234 (321)
Q Consensus       217 ~~~-----~~~~~~~~~~~~~~~  234 (321)
                      .++     ++.+|+++.+++.+.
T Consensus       437 ~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        437 LKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             CCCccccccchhhHHHHhhcccc
Confidence            654     788888888888863

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.80  E-value=1.2e-18  Score=147.11  Aligned_cols=121  Identities=21%  Similarity=0.251  Sum_probs=109.7

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      ..+..+.+..-.|.+.+.+.+...+.++.+|.++||+|||++++++++..++...+.+.+.|+..++++|++.|+..|. 
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-  137 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-  137 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-
Confidence            3344444556689999999999999999999999999999999999999999999999999997777779999999865 


Q ss_pred             cchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ..+..++++|.+++|+|+.+++....++.+|.++||++++++
T Consensus       138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl  179 (451)
T KOG2615|consen  138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL  179 (451)
T ss_pred             hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence            677889999999999999999999999999999999999887

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.79  E-value=6.7e-18  Score=150.55  Aligned_cols=230  Identities=13%  Similarity=0.017  Sum_probs=153.5

Q ss_pred             HHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH-HHHHHHH-HHHHHhhh
Q 020792           49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD-IVCIIGW-VIIVFSKA  126 (321)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~-~~~~~~~-~~~~~~~~  126 (321)
                      +.+....+...|++|.+.+++|.|..+.|++.+.+.++..++++++|+++||+|||....... ...++.. .....+++
T Consensus        14 ~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   93 (382)
T TIGR00902        14 FGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHN   93 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            333334455577888888999999999999999999999999999999999999854332221 1111222 23446788


Q ss_pred             hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHH
Q 020792          127 AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ  202 (321)
Q Consensus       127 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~  202 (321)
                      ++.+++.|++.|.+.+...+...++..++  +++|++..+....+.++|.+++|.+++.+    |||..|++.+...++.
T Consensus        94 ~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T TIGR00902        94 AWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM  171 (382)
T ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            99999999999988888888888887664  46688999999998889998888877665    8999988766553333


Q ss_pred             HHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHH
Q 020792          203 LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL  282 (321)
Q Consensus       203 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (321)
                      ++ .+.++++++    +.+++              +  +           ++..+..+.++++|++..+...+..++...
T Consensus       172 ~~-~~~~~~~~~----~~~~~--------------~--~-----------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~  219 (382)
T TIGR00902       172 LI-GFLIKPTIP----PKDAI--------------P--E-----------DESQGDSAFIALLKNPMNLRFLAAVCLIQG  219 (382)
T ss_pred             HH-HHHcCCCCC----CCccc--------------c--c-----------cccccchhHHHHHcChHHHHHHHHHHHHHH
Confidence            32 233333310    00000              0  0           000011234567777665555444333333


Q ss_pred             HHhhChhhHHHcHHHHHhhcCCCCchHHHHHHHH
Q 020792          283 QQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVI  316 (321)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  316 (321)
                          .......|.|.++++.|.++...+.+.++.
T Consensus       220 ----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~  249 (382)
T TIGR00902       220 ----AHAAYYGFSAIYWQAAGISASATGLLWGIG  249 (382)
T ss_pred             ----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHH
Confidence                245566677888888899988777666543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PTZ00207 hypothetical protein; Provisional

Probab=99.79  E-value=6.1e-18  Score=155.42  Aligned_cols=167  Identities=19%  Similarity=0.147  Sum_probs=132.2

Q ss_pred             cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh------hhhHHHHHH
Q 020792           60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS------KAAWWLDLG  133 (321)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~  133 (321)
                      .+.+.+++++|++..+.+++.++. ....+++++.|+++||+|||++++++.+++.++.++++++      ++++.+.+.
T Consensus        48 v~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~  126 (591)
T PTZ00207         48 LISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVY  126 (591)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence            455668999999999999988774 4455677889999999999999999999999999999987      689999999


Q ss_pred             HHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHH-HHHhhcch--hhHHHHHHhHHHHHHHHHHh-hcc
Q 020792          134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM-TYLIGAFL--NWRILALIGTIPCLVQLIGL-CFI  209 (321)
Q Consensus       134 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~~--~w~~~~~~~~~~~~~~~~~~-~~~  209 (321)
                      |++.|++.+..++.....+.++|| ++||++.++...+.++|+.+ +++...++  +|+..|++.+++.++..++. +++
T Consensus       127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhe
Confidence            999999999999999999999997 67999999999999999875 55555555  78888888887766655544 444


Q ss_pred             --cCChHHHHhcCChHHHHHH
Q 020792          210 --PESPRWLAKTGKGIESEAA  228 (321)
Q Consensus       210 --~e~~~~~~~~~~~~~~~~~  228 (321)
                        |+.+++..++++.+++++.
T Consensus       206 r~p~~~~~~~~~~~~~~~~~~  226 (591)
T PTZ00207        206 RLPPFHLTGYQEKHLDEEEKA  226 (591)
T ss_pred             eCCcchhhcccccCCCHHHHH
Confidence              4334443334433444443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.7e-17  Score=141.76  Aligned_cols=235  Identities=16%  Similarity=0.154  Sum_probs=180.3

Q ss_pred             HHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH---
Q 020792           46 CGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---  122 (321)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---  122 (321)
                      ...++.++......+.+|.+++.++++..|++++...++.|+.+++++.|++.+|+|+|+-+++|+.++++++.+..   
T Consensus        20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa   99 (422)
T COG0738          20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA   99 (422)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence            33444455555667889999999999999999999999999999999999999999999999999999999998875   


Q ss_pred             HhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----------------
Q 020792          123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------------  186 (321)
Q Consensus       123 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------------  186 (321)
                      ...++..++++-++.|.|.+...+.++.++..+.+++.-...+.+.+..+.+|..++|++++.+                
T Consensus       100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~  179 (422)
T COG0738         100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA  179 (422)
T ss_pred             hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence            5678889999999999999999999999999999998778889999999999999999888654                


Q ss_pred             -------hhHHHHHHhHHHHHHHHHHhhcc--cCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhccc
Q 020792          187 -------NWRILALIGTIPCLVQLIGLCFI--PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLS  257 (321)
Q Consensus       187 -------~w~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (321)
                             .|+++|...+...++..+.....  |+.+..                                  .+++.+.+
T Consensus       180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------------------~~~~~~~~  225 (422)
T COG0738         180 IKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------------------APSLGASG  225 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------------------------------cccccccc
Confidence                   36777877776655555544332  332100                                  00000111


Q ss_pred             ccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhh-cCCCCchHHHHHHHHHH
Q 020792          258 EGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSGSIGMIAMVVIQV  318 (321)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i  318 (321)
                      +....+++++++.+.-.+..+++...    -..+..|++.|+.+ .|++..++....+....
T Consensus       226 ~~~~~~l~~~~~~~~gvl~~FlYVG~----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~  283 (422)
T COG0738         226 SAGLSSLFQNKHLRLGVLAIFLYVGA----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWV  283 (422)
T ss_pred             cchHHHHHhChHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            11466778877776666666666665    45677888888888 48888877666555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.79  E-value=1.4e-17  Score=152.93  Aligned_cols=155  Identities=13%  Similarity=0.221  Sum_probs=124.6

Q ss_pred             ccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchHH-HHHHHHHHHHHHHHHHHh---hhh
Q 020792           57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRGT-MGFSDIVCIIGWVIIVFS---KAA  127 (321)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~  127 (321)
                      ...+.+|...++.|.+.++.+.+ +.....+ ++.+++|+++||+     |||+. ++++.+..+++...+++.   +++
T Consensus        30 ~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l  107 (491)
T PRK11010         30 LTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQL  107 (491)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence            34556676778889999999986 3333433 6889999999999     99985 667777777777777664   467


Q ss_pred             HHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc-----hhhHHHHHHhHHHHHHH
Q 020792          128 WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF-----LNWRILALIGTIPCLVQ  202 (321)
Q Consensus       128 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~~~~~~~~~~~~~  202 (321)
                      +.+.+.+++.+++.+...+...++..|++|+++|+++.++...+..+|.++++.+...     .|||..|++.+++.++.
T Consensus       108 ~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~  187 (491)
T PRK11010        108 RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPC  187 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence            7888899999999999999999999999999999999999999999998888755533     48999999988887777


Q ss_pred             HHHhhcccCCh
Q 020792          203 LIGLCFIPESP  213 (321)
Q Consensus       203 ~~~~~~~~e~~  213 (321)
                      .+..++.||++
T Consensus       188 ~l~~~~~~e~~  198 (491)
T PRK11010        188 IIATLLAPEPT  198 (491)
T ss_pred             HHHHHhcCCCc
Confidence            66656677763

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.79  E-value=9.6e-18  Score=149.56  Aligned_cols=222  Identities=13%  Similarity=0.048  Sum_probs=147.7

Q ss_pred             ccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccch----HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 020792           55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR----GTMGFSDIVCIIGWVIIVFSKAAWWL  130 (321)
Q Consensus        55 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~  130 (321)
                      .+...|.+|.+.+++|.|..+.|++.+++.++..++++++|+++||+|||    +.+.+...+  .........++++.+
T Consensus        20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l   97 (382)
T PRK11128         20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSFWLL   97 (382)
T ss_pred             HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccHHHH
Confidence            34456777777888999999999999999999999999999999999984    333222221  122233445889999


Q ss_pred             HHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh
Q 020792          131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       131 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      ++.|++.|++.+...+...++..++  .++|+++.+....+..+|..++|.+++.+    +||..|++.++..++..+..
T Consensus        98 ~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~  175 (382)
T PRK11128         98 FVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ  175 (382)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence            9999999999888888887887776  34577777777777778888888777665    99999987776555444433


Q ss_pred             hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhh
Q 020792          207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG  286 (321)
Q Consensus       207 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (321)
                      ++.||+++    +++++                  +          ..++...++++++|++..+......++....   
T Consensus       176 ~~~~~~~~----~~~~~------------------~----------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~---  220 (382)
T PRK11128        176 LLRPTIMP----QGESR------------------Q----------QESAGWPAWKALLKEPTVWRFLLCVSLLQGS---  220 (382)
T ss_pred             HccCCCCC----ccccc------------------c----------ccccccchHHHHHcChhHHHHHHHHHHHHHH---
Confidence            44454311    00000                  0          0000123456777776665544433333332   


Q ss_pred             ChhhHHHcHHHHHhhcCCCCchHHHHHHHH
Q 020792          287 GVNGIAFYASSIFISAGFSGSIGMIAMVVI  316 (321)
Q Consensus       287 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~  316 (321)
                       ......+.|.+.++.|.++...+...++.
T Consensus       221 -~~~~~~~~~~~~~~~g~s~~~~g~~~~~~  249 (382)
T PRK11128        221 -HAAYYGFSAIYWQAAGYSASTIGYLWSLG  249 (382)
T ss_pred             -hHhHHHHHHHHHHHCCCCHhHHHHHHHHH
Confidence             33455666778788899887666655544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.78  E-value=1.3e-17  Score=149.75  Aligned_cols=164  Identities=17%  Similarity=0.203  Sum_probs=130.7

Q ss_pred             HHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchH-HHHHHHHHHHHHHHHH
Q 020792           48 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRG-TMGFSDIVCIIGWVII  121 (321)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~  121 (321)
                      ++..+...+.....+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||+ .+.++.++.+++....
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l   85 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM   85 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            34444455555667777777889999999999777766  58999999999999     8775 7888888888877777


Q ss_pred             HHh---hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc-----hhhHHHHH
Q 020792          122 VFS---KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF-----LNWRILAL  193 (321)
Q Consensus       122 ~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~~~~  193 (321)
                      ++.   .+.+.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|..+++.++..     .+||..|+
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~  165 (402)
T PRK11902         86 AFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL  165 (402)
T ss_pred             HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence            775   3567777787888888888889999999999999999999999999988888888775533     38999999


Q ss_pred             HhHHHHHHHHHHhhcccCCh
Q 020792          194 IGTIPCLVQLIGLCFIPESP  213 (321)
Q Consensus       194 ~~~~~~~~~~~~~~~~~e~~  213 (321)
                      +.+++.++..+..++.||++
T Consensus       166 i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        166 LMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHhcCCCc
Confidence            98887766655555667653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.3e-18  Score=155.76  Aligned_cols=253  Identities=19%  Similarity=0.210  Sum_probs=177.8

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG-RLLV  137 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  137 (321)
                      +...+.++++++.+.++.+|+.++......+.+|+.+.+.||+|.|.+.+.|.++..++.++.++++++|.+++. .++.
T Consensus        66 Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~  145 (509)
T KOG2504|consen   66 GLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIG  145 (509)
T ss_pred             hhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            466778999999999999999999999999999999999999999999999999999999999999999988777 5888


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcccC-C
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE-S  212 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e-~  212 (321)
                      |+|.|..+.....++..+|++ +|+.++|+...+.++|.++-|.+...+    |||+.+++.+.+.+-.++....+++ +
T Consensus       146 G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~  224 (509)
T KOG2504|consen  146 GLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLS  224 (509)
T ss_pred             hccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999988875 499999999999999998888777666    9999999888887666655544432 2


Q ss_pred             hHHHHhcCChHHHHHHHH------------HHhCCCcchH----HHHHHHHHHHHHHh--cccccch---hhhhhhhhhh
Q 020792          213 PRWLAKTGKGIESEAALQ------------RLRGADADIS----EEAAEIREYTETLE--RLSEGGI---LELFQRKYAH  271 (321)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~  271 (321)
                      +...   +..+++.+..+            .....+....    ....+.++..++..  ..+....   .+++++    
T Consensus       225 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----  297 (509)
T KOG2504|consen  225 PPKK---PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----  297 (509)
T ss_pred             cCCC---chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----
Confidence            1100   00000000000            0000000000    00000000000000  0001111   344444    


Q ss_pred             HHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCchHHHHHHHHHHh
Q 020792          272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQVI  319 (321)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~  319 (321)
                      +.++.+.+.......+++....|+|.+.++.|++...++.++++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~  345 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVS  345 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHh
Confidence            445555555555566788899999999999999999888887777654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.77  E-value=6e-17  Score=148.07  Aligned_cols=145  Identities=16%  Similarity=0.195  Sum_probs=128.1

Q ss_pred             ccccc--cCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 020792           64 GITND--LGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        64 ~~~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  140 (321)
                      ++.++  +|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.+++.++.+++++.+.+.+++++.|++
T Consensus        36 yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g  115 (475)
T TIGR00924        36 YLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG  115 (475)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc
Confidence            35555  89999999999999999999999999999999 8999999999999999999999988888888999999999


Q ss_pred             hhhhcchhhhhhhccCCCcc---chhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc
Q 020792          141 MGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      .|...+...++++|++|+++   |+++.++.+.+.++|..++|.+++++    +|++.|++.++..++..+..++
T Consensus       116 ~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       116 SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764   78899999999999999999888766    8999999877655555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.76  E-value=4.4e-17  Score=146.04  Aligned_cols=148  Identities=16%  Similarity=0.195  Sum_probs=108.0

Q ss_pred             cchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH---Hh-----hhhHHH
Q 020792           60 PAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---FS-----KAAWWL  130 (321)
Q Consensus        60 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~~  130 (321)
                      +.+| ++.+++|++..+.+++.++..++..++++++|+++||+|||+.++.+.+..+++.....   +.     .....+
T Consensus        23 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (396)
T TIGR00882        23 PFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGA  102 (396)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3444 46677999999999999999999999999999999999999999887766655443221   11     123345


Q ss_pred             HHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhh
Q 020792          131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       131 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      .+.+++.|++.+...+....+..|..+  +++...+......++|..++|.+++.+   +|+.+|++.+.+.++..+..+
T Consensus       103 ~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       103 IVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence            666888888888878877777766533  234455666666677777777777654   899999988887776665554


Q ss_pred             cc
Q 020792          208 FI  209 (321)
Q Consensus       208 ~~  209 (321)
                      +.
T Consensus       181 ~~  182 (396)
T TIGR00882       181 FA  182 (396)
T ss_pred             Hh
Confidence            43

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.76  E-value=1.7e-16  Score=142.06  Aligned_cols=149  Identities=13%  Similarity=0.190  Sum_probs=110.7

Q ss_pred             ccccccCCChhhHHHHHHHHHH-HHHHHHHhHHHhhhhccchHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTM-GFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM  141 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  141 (321)
                      ++.+++|.+.++.|++.+...+ +..++.+.+++ +||+|||+.+ ..+.+..+++..+.+++++++.+++.+.+.+...
T Consensus        41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  119 (393)
T PRK15011         41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFG  119 (393)
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4788999999999999776655 55555555565 9999999875 4556666677777888899988776666655555


Q ss_pred             hhhcchhhhhhhccCCCccc--hhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccCCh
Q 020792          142 GLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPESP  213 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e~~  213 (321)
                      +...+....+..|+.+++.|  +...+..+.+..+|..++|.+++.+    |||..|+..++..++..+.. +++||.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        120 STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            56777788888888776655  3455778888888888888888655    99999998887766655544 4567653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.76  E-value=3e-17  Score=165.51  Aligned_cols=221  Identities=16%  Similarity=0.140  Sum_probs=148.9

Q ss_pred             cccccCCCh-hhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 020792           65 ITNDLGLSV-AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGF---SDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        65 ~~~~~~~s~-~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  140 (321)
                      +..+.+.+. ...++..+++.+.++++++++|+++||+|||+++..   ..+..++........++++.++++|+++|++
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~  121 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH  121 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            444444433 346888899999999999999999999999997533   2222222223333458999999999999999


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcccCChHHH
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESPRWL  216 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~  216 (321)
                      .+...++..+++.+++|+++|++++++.+++..+|.+++|.+++++    +|++.|+..++..++.++..+++|+++...
T Consensus       122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (1140)
T PRK06814        122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAA  201 (1140)
T ss_pred             HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999999999999999999999999999999999999999999877    899888555555555555556666653100


Q ss_pred             HhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHH
Q 020792          217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYAS  296 (321)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (321)
                        ++...  .         . +.      .++        ....++.+.+++..+...+..++..+.    ...+..+.|
T Consensus       202 --~~~~~--~---------~-~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p  249 (1140)
T PRK06814        202 --PDLKI--D---------R-NI------IRS--------TITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQLP  249 (1140)
T ss_pred             --CCCee--c---------c-ch------HHH--------HHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHhH
Confidence              00000  0         0 00      000        011244455555555544433333332    345666788


Q ss_pred             HHHhhc-CCCCchHHHHHHHHH
Q 020792          297 SIFISA-GFSGSIGMIAMVVIQ  317 (321)
Q Consensus       297 ~~~~~~-g~s~~~~~~~~~~~~  317 (321)
                      .|+++. |.++...+.+.+...
T Consensus       250 ~~~~~~~g~~~~~~g~~~~~~~  271 (1140)
T PRK06814        250 LLAKETLGGDENVATLFLAVFS  271 (1140)
T ss_pred             HHHHHHcCCchHHHHHHHHHHH
Confidence            888876 888876665555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.75  E-value=3.6e-17  Score=149.69  Aligned_cols=172  Identities=15%  Similarity=0.148  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHH
Q 020792           35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIV  113 (321)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~  113 (321)
                      +..+.+++.-....+.++.....   ...++.+++|++.++.+++.+.+.....+..+++|+++|| +|||++++++.++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~---l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGI---LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            44555444444444444433332   3335788899999999999999998888999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhhHH-HHHHHHHHhhhhhhhcchhhhhhhccCCCcc--chhHHhHHHHHHHHHHHHHHHhhcch----
Q 020792          114 CIIGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----  186 (321)
Q Consensus       114 ~~~~~~~~~~~~~~~~-~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----  186 (321)
                      .+++.++++++.+... ++++|+++|++.|...+...++++|.+|+++  |+.+.++++.+.++|..++|.+++++    
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~  170 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF  170 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998876444 5578999999999999999999999998874  47788889999999888887777655    


Q ss_pred             hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          187 NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       187 ~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      |||+.|++.++..++.++..++.
T Consensus       171 gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        171 GYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHc
Confidence            99999988655444444333333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.75  E-value=9e-17  Score=162.37  Aligned_cols=122  Identities=11%  Similarity=0.089  Sum_probs=104.8

Q ss_pred             cccccCCCh--hhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHhh
Q 020792           65 ITNDLGLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        65 ~~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~  139 (321)
                      +..+++.+.  ...+++.+++.++++++++++|+++||+|||++++++.++.+++.++.   ...++++.++++|++.|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  115 (1146)
T PRK08633         36 LIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGA  115 (1146)
T ss_pred             HHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            444555543  447899999999999999999999999999999999887666555443   345788999999999999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +.+...+...+++.|++|+++|++++++...+..+|.++++.+++++
T Consensus       116 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l  162 (1146)
T PRK08633        116 QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL  162 (1146)
T ss_pred             HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888765

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=3.2e-18  Score=145.38  Aligned_cols=143  Identities=18%  Similarity=0.178  Sum_probs=133.9

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 020792           67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        67 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      ++++-+.++.|++.....+.+.+.+++.|.+.||+|+|..+++|++.+.++++++++..+++.++++|.++|+|.+...+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            34566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCcc-chhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          147 VVPVYIAEITPKNL-RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       147 ~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      +..++++|.||.++ |++++|+...+..+|..++|.+++.+    |.+.+|++.+++.++...+.+++
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            99999999999765 69999999999999999999999887    89999999999999888877665

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.73  E-value=2.8e-16  Score=141.93  Aligned_cols=145  Identities=18%  Similarity=0.171  Sum_probs=97.3

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH---Hhhh-----hHHHHHHHH
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---FSKA-----AWWLDLGRL  135 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~  135 (321)
                      ++.+++|++..+.|++.++..++..++++++|+++||+|||++++++..+.+++.....   ..+.     .....+.++
T Consensus        36 ~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (420)
T PRK09528         36 WLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI  115 (420)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777999999999999999999999999999999999999999887666554433211   1111     111222233


Q ss_pred             HHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhhccc
Q 020792          136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIP  210 (321)
Q Consensus       136 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~~~~  210 (321)
                      +.|.+.....+....+..+ . .++++...+.......+|..++|.+++.+   +|+++|++.+++.++.++..++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        116 YLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccc
Confidence            3333332222333333222 2 23457777887787888888888887766   899999988877776666655543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.67  E-value=2.8e-15  Score=135.75  Aligned_cols=143  Identities=18%  Similarity=0.225  Sum_probs=115.8

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYGM  141 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~  141 (321)
                      ++.+++|+++.+.+.+.+.+.+...++.+++|+++||+ |||++++++.++.+++.++.+..+ +...+.+...+.+++.
T Consensus        35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~  114 (493)
T PRK15462         35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY  114 (493)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence            46677999999999999999999999999999999999 999999999999999887766543 2233444444455666


Q ss_pred             hhhcchhhhhhhccCCCc--cchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh
Q 020792          142 GLLSYVVPVYIAEITPKN--LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      |...+...++++|.+|++  +|..+.++.+.+.++|+.++|.+.+++    ||++.|.+.++..++.++..
T Consensus       115 G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        115 GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            666777789999999976  688899999999999999999998876    89999988766555544443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.67  E-value=3.5e-15  Score=137.28  Aligned_cols=142  Identities=20%  Similarity=0.285  Sum_probs=118.1

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhh
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYG  140 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~  140 (321)
                      .++.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++..++++++ +.+.+.+++++.|++
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig  125 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG  125 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            35778999999999888888776666667899999999 5999999999999999988888864 456677889999999


Q ss_pred             hhhhcchhhhhhhccCCCcc--chhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHH
Q 020792          141 MGLLSYVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI  204 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~  204 (321)
                      .|...+...+++.|++|+++  |+.+.++++.+.++|..++|.+++++    |||+.|++.++..++.++
T Consensus       126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i  195 (500)
T PRK09584        126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVV  195 (500)
T ss_pred             hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            99888888899999998654  35678888999999999999888776    899999987765454443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.66  E-value=3e-15  Score=135.06  Aligned_cols=175  Identities=17%  Similarity=0.206  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh----hccchHHHHHH
Q 020792           35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRGTMGFS  110 (321)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~  110 (321)
                      ++++.+........+.+....    +..+.+.+++|.+..+.+++..+..+...+.+|+.|+++|    |+|||++++++
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~----~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~   79 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQL----SLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAA   79 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHH
Confidence            344444344334445444443    3344456789999999999999999999999999999999    59999998775


Q ss_pred             -HHHHHHHHHHHHHhhhhH-----------------HHHHHHHHHhhhhhhhcchhhhhhhccCCCccc--hhHHhHHHH
Q 020792          111 -DIVCIIGWVIIVFSKAAW-----------------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQL  170 (321)
Q Consensus       111 -~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~  170 (321)
                       .+..+++..+.+++++..                 ..+++..+..++.....+...++++|..|+++|  +.+.++.+.
T Consensus        80 g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~  159 (477)
T TIGR01301        80 GAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF  159 (477)
T ss_pred             HHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence             666666667777665532                 223333344557777788889999999998876  578999999


Q ss_pred             HHHHHHHHHHHhhcch-------------------hhHHHHHHhHHHHHHHHHHh-hcccCCh
Q 020792          171 MICIGVSMTYLIGAFL-------------------NWRILALIGTIPCLVQLIGL-CFIPESP  213 (321)
Q Consensus       171 ~~~~g~~~~~~i~~~~-------------------~w~~~~~~~~~~~~~~~~~~-~~~~e~~  213 (321)
                      ..++|.++++.+++..                   +.+..|++.+++.++..+.. ++.+|.|
T Consensus       160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            9999999988877543                   45677888777766665554 5578864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.64  E-value=1.6e-14  Score=129.28  Aligned_cols=147  Identities=16%  Similarity=0.169  Sum_probs=120.0

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      ++++++|++..+.+++.+...++..++.++.|+++||+|||+.+..+.+..++........++.+.+++.+++.+++.|.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            46678899999999988888888889999999999999999988877766665555555567777778888888888777


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcccC
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE  211 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e  211 (321)
                      ..+....+..|.+|+ +|+++.++++....+|..++|.+++.+    +|+..+++.+++.++.++..+++||
T Consensus       322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            777778888999986 489999998888888888888877765    8999998888888877777776664

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.64  E-value=1.6e-14  Score=129.26  Aligned_cols=236  Identities=12%  Similarity=-0.012  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHhhcccccccchhccccccCCChhhHHHH--HHHHHHHHHHHHHhH-HHhhhhccchHHHHHHHHHH-HHH
Q 020792           42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLF--GSILTIGAMIGAIMS-GKIADYIGRRGTMGFSDIVC-IIG  117 (321)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~-~~~  117 (321)
                      ..+...++..+...+...+.+|.+.++.|.+.++.|++  .+...+...+.+|++ ++.+||+|||+..++.+.+. +++
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~   83 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC   83 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence            33444556667777777889999999999999999997  466688888888888 55799999999875555332 222


Q ss_pred             HHHHH---Hhhh-hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh----cchhhH
Q 020792          118 WVIIV---FSKA-AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AFLNWR  189 (321)
Q Consensus       118 ~~~~~---~~~~-~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~~~w~  189 (321)
                      ....+   ...+ ...++...++.++..+...+..-++..|..++++++...+....+..+|..+++...    ...+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~  163 (390)
T TIGR02718        84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR  163 (390)
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            22222   1222 333444455566666777777788888998888888888888888888888887544    445999


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhh
Q 020792          190 ILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKY  269 (321)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (321)
                      ..|++.+++.++..+..++++|+++.   +.+                . ++              .+..++++.+|++.
T Consensus       164 ~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~----------------~-~~--------------~~~~~~~~~l~~~~  209 (390)
T TIGR02718       164 PAFLLVACVPLASLVCVLWLKDRAVA---SPE----------------A-PL--------------ARRASLFRFFRRPL  209 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcC---ccc----------------c-ch--------------hhHHHHHHHHcCcC
Confidence            99999988877766665555443210   000                0 00              00112456677665


Q ss_pred             hhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCchHHHHHHH
Q 020792          270 AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVV  315 (321)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  315 (321)
                      .+......++....    ......+.+.++++.|++++..+.+.++
T Consensus       210 ~~~~~~~~~l~~~~----~~~~~~~~~~~l~~~G~s~~~ig~~~~~  251 (390)
T TIGR02718       210 AWSLLALALLSAMT----AVSGFGLSKLYLVDAGWPLEWIGRLGMA  251 (390)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHhhHHHHhcCCCHHHHHHHHhH
Confidence            55444433333322    3344456677888889998876666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.63  E-value=2.5e-15  Score=113.91  Aligned_cols=132  Identities=25%  Similarity=0.365  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCc
Q 020792           80 GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN  159 (321)
Q Consensus        80 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  159 (321)
                      .+...++..++.++.|++.||+|||+.+..+.....++.++....++.+.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788899999999999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             cchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc-ccC
Q 020792          160 LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF-IPE  211 (321)
Q Consensus       160 ~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~-~~e  211 (321)
                      +|++..+..+....+|..++|.+.+.+    +|++.+++.+.+.++..+..++ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999988888766    7999988887776666655543 444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.62  E-value=7.2e-15  Score=139.18  Aligned_cols=138  Identities=15%  Similarity=0.075  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhcc
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI  155 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  155 (321)
                      ..+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.++.++...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35557778899999999999999999999999999999999999988888888888888888988888899999999999


Q ss_pred             CCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhhcccCCh
Q 020792          156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPESP  213 (321)
Q Consensus       156 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~~~~e~~  213 (321)
                      +|+++|++++++.+....+|.+++|++++.+   +...+|++.+++.+++.++.+++||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999998765   445677777777777777777789873

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.61  E-value=5.6e-17  Score=148.91  Aligned_cols=261  Identities=19%  Similarity=0.262  Sum_probs=3.0

Q ss_pred             hhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--------
Q 020792           52 GSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF--------  123 (321)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------  123 (321)
                      ....++....++.++++|+++.++.|++.+.+-++..+..++..++.+|..|-+.+-+|.++.+++++++++        
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y   95 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY   95 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence            455566677788899999999999999999999999999999999999999999999999999999988764        


Q ss_pred             ------------------h------------------------hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccc
Q 020792          124 ------------------S------------------------KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR  161 (321)
Q Consensus       124 ------------------~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r  161 (321)
                                        .                        .-++.++++.++.|+|..+.+++..+|+-|..++++-
T Consensus        96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s  175 (539)
T PF03137_consen   96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS  175 (539)
T ss_dssp             --------------------------------------------------------SSS---------------------
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence                              0                        0035677889999999999999999999999999988


Q ss_pred             hhHHhHHHHHHHHHHHHHHHhhcch--------------------------hhHHHHHHhHHHHHHHHHHhhcccCC-hH
Q 020792          162 GGFTTVHQLMICIGVSMTYLIGAFL--------------------------NWRILALIGTIPCLVQLIGLCFIPES-PR  214 (321)
Q Consensus       162 ~~~~~~~~~~~~~g~~~~~~i~~~~--------------------------~w~~~~~~~~~~~~~~~~~~~~~~e~-~~  214 (321)
                      +...|+.+....+|.++|.++++..                          .|+.-|++.+.+.++..+..+++|++ |+
T Consensus       176 plYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~  255 (539)
T PF03137_consen  176 PLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG  255 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence            9999999999999998888877543                          25556666677767666666777765 32


Q ss_pred             HHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHc
Q 020792          215 WLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY  294 (321)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (321)
                      . .  +..++.+.  ++.+.++ ...++.++  +...+.......++...+++....+.++...+..........++..|
T Consensus       256 ~-~--~~~~~~~~--~~~~~~~-~~~~~~~~--~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF  327 (539)
T PF03137_consen  256 T-S--ERQEEKES--SERKEED-SDKDSFKD--PKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF  327 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-c--cccchhhh--hhcchhh-hhhhcccc--cccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 0  00000000  0000000 00000000  00000000111222223333444556666666666777778899999


Q ss_pred             HHHHHhhc-CCCCchHHHHHHHHHHhc
Q 020792          295 ASSIFISA-GFSGSIGMIAMVVIQVID  320 (321)
Q Consensus       295 ~~~~~~~~-g~s~~~~~~~~~~~~i~g  320 (321)
                      .|-|++.. +.+++.+.++.|+..+++
T Consensus       328 ~pKylE~QF~~sas~A~~l~G~v~ip~  354 (539)
T PF03137_consen  328 LPKYLESQFGLSASQASLLTGIVSIPG  354 (539)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHhhhhcch
Confidence            99999987 999999999988887765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=4.8e-14  Score=127.14  Aligned_cols=152  Identities=13%  Similarity=-0.036  Sum_probs=104.0

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccc-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-RGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV  137 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (321)
                      .+..+++.+++|++..+.|++.+...++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+.+.|++.
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  102 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN  102 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            344556888899999999999999999999999999999999965 7788888888888888888888999999999999


Q ss_pred             hhhhhhhcchhhhhh----h----ccCCCccchhHHhHHHHHHHHHHHHHHHhhcchhhHHHHHHhHHHHHHHHHHhhcc
Q 020792          138 GYGMGLLSYVVPVYI----A----EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       138 G~~~~~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      |++.+...+...+..    .    |......|.+..|.  .+..+|+.+++.+.....|+ +|++.++..++..+..+++
T Consensus       103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~  179 (418)
T TIGR00889       103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTL  179 (418)
T ss_pred             HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcC
Confidence            998766655544432    1    22222223344332  33444444443332111243 4555555555555555667


Q ss_pred             cCCh
Q 020792          210 PESP  213 (321)
Q Consensus       210 ~e~~  213 (321)
                      ||+|
T Consensus       180 ~e~~  183 (418)
T TIGR00889       180 PDIP  183 (418)
T ss_pred             CCCC
Confidence            8764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.60  E-value=1.6e-14  Score=131.06  Aligned_cols=152  Identities=20%  Similarity=0.152  Sum_probs=116.2

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh----ccchH-HHHHHHHHHHHHHHHHHHhhh------hHH
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRRG-TMGFSDIVCIIGWVIIVFSKA------AWW  129 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~  129 (321)
                      ..+++.+++|+++.+.|++.++..+..++..|+.|+++||    +|||| .++++....+++.+++...++      .+.
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            3445778899999999999999999999999999999997    67754 677787888877777766543      355


Q ss_pred             HHHHHHHHhhhhhhhcchhhhhhhccC-CCccchhHHhHHHHHHHHHHHHHHHhh----c-------chhhHHHHHHhHH
Q 020792          130 LDLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIG----A-------FLNWRILALIGTI  197 (321)
Q Consensus       130 ~~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~----~-------~~~w~~~~~~~~~  197 (321)
                      +++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.    .       ..+||+.+.+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~  181 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL  181 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence            667778888888877777788889987 468899999988887777765443322    1       2379999988888


Q ss_pred             HHHHHHHHh-hcccCC
Q 020792          198 PCLVQLIGL-CFIPES  212 (321)
Q Consensus       198 ~~~~~~~~~-~~~~e~  212 (321)
                      +.++..+.. ++.||+
T Consensus       182 l~~~~~~~~~~~~~e~  197 (437)
T TIGR00792       182 IGVVSLIICFFGTKER  197 (437)
T ss_pred             HHHHHHHHHHcCCEec
Confidence            777665554 456665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.59  E-value=1.7e-13  Score=125.73  Aligned_cols=171  Identities=16%  Similarity=0.265  Sum_probs=132.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH
Q 020792           32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD  111 (321)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  111 (321)
                      +..+..|..-.+..++..+......+       +..+..-|+...+++..+..+-..+.++++|.++||+.||++++.+.
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~w-------lv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~   82 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAW-------LVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ   82 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            34456666666666666666444332       33344558889999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH-----hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          112 IVCIIGWVIIVF-----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       112 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ++.++...+.++     ..+.+.+++.-++.|++.+...|...+++.|..|+++...++++.....++..++||.+++.+
T Consensus        83 ~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen   83 LLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            877665544333     246788889999999999999999999999999999999999999999999888888888775


Q ss_pred             ----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          187 ----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       187 ----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                          |-.+.|.+.++.-++..+....+
T Consensus       163 va~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  163 VAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                66677777665544444333333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=1.1e-14  Score=134.36  Aligned_cols=266  Identities=17%  Similarity=0.222  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 020792           42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII  121 (321)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  121 (321)
                      .+..+..+..+...+++...+..+++.|+++.++.|++.+.+-++..+...+..++.-|..|-+.+-+|+++++++++++
T Consensus       100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            33444455555555777778888999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHh--------------------h---------------------------h----hH-HHHHHHHHHhhhhhhhcchhh
Q 020792          122 VFS--------------------K---------------------------A----AW-WLDLGRLLVGYGMGLLSYVVP  149 (321)
Q Consensus       122 ~~~--------------------~---------------------------~----~~-~~~~~~~l~G~~~~~~~~~~~  149 (321)
                      ++-                    +                           .    .+ .++++.++.|+|..+.++...
T Consensus       180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi  259 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI  259 (735)
T ss_pred             hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence            740                    0                           0    22 567778999999999999999


Q ss_pred             hhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----------------------hhHHHHHHhHHHHHHHHHHh
Q 020792          150 VYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----------------------NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       150 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------------------~w~~~~~~~~~~~~~~~~~~  206 (321)
                      +|+-|...+++-....++.+....+|.++|.+++++.                       .|+.-|++.+.+.++..+..
T Consensus       260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~  339 (735)
T KOG3626|consen  260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL  339 (735)
T ss_pred             ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999889999999999999999998888653                       37777888888888888888


Q ss_pred             hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhh
Q 020792          207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG  286 (321)
Q Consensus       207 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (321)
                      +++|.+.+..   +++    ...++.+..+.+.+.+      +.+....++-.++...+++....++++...+.......
T Consensus       340 f~fPk~lp~~---~~~----~~~~~~~~~k~~~~~~------~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~  406 (735)
T KOG3626|consen  340 FFFPKELPKS---QKR----KRARDLHVLKTESGGA------KSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESL  406 (735)
T ss_pred             HhCcccCccc---ccc----chhhhhcccccccccc------cCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            8888763211   100    0000000000000000      00000000001122223333445566667777777777


Q ss_pred             ChhhHHHcHHHHHhhc-CCCCchHHHHHHHHHHhc
Q 020792          287 GVNGIAFYASSIFISA-GFSGSIGMIAMVVIQVID  320 (321)
Q Consensus       287 ~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~g  320 (321)
                      .+.+...|+|-|++.. |.+++.+...+|..++++
T Consensus       407 ~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~  441 (735)
T KOG3626|consen  407 AITGYITFLPKYLETQFGISASLANILTGSIGVPA  441 (735)
T ss_pred             HHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhh
Confidence            7889999999999987 999999999999888875

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.58  E-value=2.8e-14  Score=126.51  Aligned_cols=141  Identities=19%  Similarity=0.122  Sum_probs=118.6

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHhhh
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGYG  140 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~  140 (321)
                      +.+.+++|.+..+.+.+.+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.  ..+.+..++.|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  308 (377)
T TIGR00890       229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT  308 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence            33456788898899999999999999999999999999999999999988888888777766533  3344567788888


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHH
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL  203 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~  203 (321)
                      .+...+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+    ||++.|.+.+++.++++
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            8888888889999999999999999999999999999999887665    89998888777666543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=9.7e-15  Score=131.90  Aligned_cols=145  Identities=13%  Similarity=0.077  Sum_probs=120.6

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcch
Q 020792           68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYV  147 (321)
Q Consensus        68 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  147 (321)
                      +.+.+..+.|++.++..++..++.+++|+++||+|||+.+.++.++.+++.++.++.++.+.+.+.+++.|++.+...+.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34667778899999999999999999999999999999999999998888888888889998889999999988887777


Q ss_pred             hhhhhhccCCCccchhHHhH-HHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh-cccCC
Q 020792          148 VPVYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC-FIPES  212 (321)
Q Consensus       148 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~-~~~e~  212 (321)
                      ...++.|.+|++.|++..+. ++.+..+|..++|.+.+++    ||+..|.+.+++.++..++.+ .++++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88899999999988877655 5667778888888877765    899999988877766555544 34443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.57  E-value=1.6e-13  Score=121.92  Aligned_cols=147  Identities=18%  Similarity=0.242  Sum_probs=121.5

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      ++.+++|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..++.....+.++.+.+.+.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999999988888888888899999999999999999888777666666666677888888888999998888


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcccC
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE  211 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e  211 (321)
                      ..+....++.|..|++ |+++.++++....+|..++|.+.+.+    +|+..|++.+++.++..+..++++|
T Consensus       305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       305 LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            8888888999998764 67999999988889998888887765    7999999888887777776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.57  E-value=3.4e-14  Score=127.76  Aligned_cols=149  Identities=14%  Similarity=0.072  Sum_probs=122.5

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  140 (321)
                      ..|.+.++.|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+..+++..+..+.++.+.+.+..++.|++
T Consensus       242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            34556667899999999999999999999999999999999999999887777777777667777777777778888988


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      .+...+...+++.|.+|+++|++..++.+....+|..++|.+.+.+     +|...++......++..+..+++
T Consensus       322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8788888899999999999999999999999999999999998876     45555655555555555444444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.54  E-value=2e-13  Score=119.66  Aligned_cols=151  Identities=23%  Similarity=0.388  Sum_probs=133.6

Q ss_pred             ccchhccccc-cCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           59 SPAQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG-TMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        59 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      ....|.+.++ +|.+..+.++..+...++..++.++.+++.||+|||+ .+..+.++..++.++....++.+.+.+..++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  274 (352)
T cd06174         195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL  274 (352)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3344444444 5899999999999999999999999999999999999 9999999999999999988888889999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      .|++.+...+....++.|..|+++|++..+..+....+|..+++.+.+.+    +|+..+++.+++.++..+..+++
T Consensus       275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence            99999999999999999999999999999999999999999999888765    89999999888888777665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.53  E-value=4.2e-13  Score=120.40  Aligned_cols=144  Identities=15%  Similarity=0.266  Sum_probs=119.5

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 020792           67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        67 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      ++.|.  ++.++..+.+.++..++.++.|++.||+|||+.+..+.++.+++..+..+.++.+.+++..++.|++.+..++
T Consensus       244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  321 (399)
T PRK05122        244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP  321 (399)
T ss_pred             HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence            34455  3456677888899999999999999999999999998888888888888888888888889999999988888


Q ss_pred             hhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcccCC
Q 020792          147 VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES  212 (321)
Q Consensus       147 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~  212 (321)
                      .....+.|..|+++|+++.++++....+|..+++.+.+.+    ||+..+++.+++.++.++..++++++
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888888999999999999999999988888777776655    89999998888877777666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.53  E-value=6.8e-13  Score=118.04  Aligned_cols=151  Identities=17%  Similarity=0.232  Sum_probs=121.9

Q ss_pred             hhcccc-ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccc-hHHHHHHHHHHHHHHHHH-HH---hh-hhHHHHHHH
Q 020792           62 QSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-RGTMGFSDIVCIIGWVII-VF---SK-AAWWLDLGR  134 (321)
Q Consensus        62 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-~~~~~~~~~  134 (321)
                      -|++++ |.+.+.+..|++.++..++.+++++.+|+.+.|.+. |+.++.+.++.++++++. ++   .+ ..+.++++|
T Consensus        58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R  137 (488)
T KOG2325|consen   58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVAR  137 (488)
T ss_pred             chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            444554 577788889999999999999999999999999996 888899999999998877 33   23 568899999


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----------------hhHHHHHHhHH
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----------------NWRILALIGTI  197 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------------~w~~~~~~~~~  197 (321)
                      ++.|+|.|. ....-.|+++-...++|.++.+....+..+|..+||.++..+                 -+..+-|+.++
T Consensus       138 ~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i  216 (488)
T KOG2325|consen  138 ILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAI  216 (488)
T ss_pred             HHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHH
Confidence            999999764 677889999988888999999999998888888888877554                 13356777777


Q ss_pred             HHHHHHHHh-hcccCCh
Q 020792          198 PCLVQLIGL-CFIPESP  213 (321)
Q Consensus       198 ~~~~~~~~~-~~~~e~~  213 (321)
                      +.++..+.. ++++|.+
T Consensus       217 ~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  217 LWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HHHHHHHHHHhheeecc
Confidence            777766655 4566664

>PRK03699 putative transporter; Provisional

Probab=99.53  E-value=4.1e-13  Score=120.32  Aligned_cols=147  Identities=11%  Similarity=0.063  Sum_probs=119.2

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      ++++++|++..+.+.+.+.+.++..++.++.|+++||+|||+++.....+.++...+....++.+.+.+..++.|++.+.
T Consensus       231 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  310 (394)
T PRK03699        231 YAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA  310 (394)
T ss_pred             HHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            35577899999999999999999999999999999999999999888877777766666677777777778888988888


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcccC
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE  211 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e  211 (321)
                      .++...++..|..|. +++...+.......+|..++|.+.+.+    ||+..++..+++.++..+..+.+++
T Consensus       311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        311 IYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            888888888887764 467777888888888998888887766    8888888877777766665555443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.52  E-value=1.6e-13  Score=123.74  Aligned_cols=140  Identities=13%  Similarity=0.210  Sum_probs=116.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHhhhhhhhcchh
Q 020792           73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK----AAWWLDLGRLLVGYGMGLLSYVV  148 (321)
Q Consensus        73 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~~~~~~~~  148 (321)
                      .++.+...++..++..++.++.|+++||+|||+++.++.++.+++..+.....    +.+.+++.+++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46679999999999999999999999999999999999999888876666532    24567778999999998888888


Q ss_pred             hhhhhccCCCccchhHHhHHH-HHHHHHHHHHHHhhcch----------hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          149 PVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       149 ~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----------~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      ..++.|++|+++|+++.++.+ ....+|..++|.+++.+          ||+..|.+.+++.++..+.. ++++|+
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999997 56788888888888654          38999988887766665554 556766

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09952 shikimate transporter; Provisional

Probab=99.52  E-value=3.7e-13  Score=122.24  Aligned_cols=149  Identities=17%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF---S-KAAWWLDLGRLLVGY  139 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~G~  139 (321)
                      ++.+++|.+......+.....+...++.+++|+++||+|||+++..+.++.+++......   . ++.+.+++..++.++
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            466778888877666666677778889999999999999999988887766555443322   2 233444455666788


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHH-HHHHHHHHHHHHhhcch------hhHHHHHHhHHHHHHHHHHhhcccCC
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPES  212 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~  212 (321)
                      +.+...+..++++.|.+|++.|+.+.++.+ .+..+|+.++|.+.+++      +|+.++.+.+++.++..+..+.++|+
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            888878888999999999999988888854 44557888888887765      47888888888888777776666664

>PRK12382 putative transporter; Provisional

Probab=99.49  E-value=1.1e-12  Score=117.31  Aligned_cols=141  Identities=17%  Similarity=0.200  Sum_probs=118.6

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      +.++.|.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+.+..++.|++.+..
T Consensus       242 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  319 (392)
T PRK12382        242 YFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI  319 (392)
T ss_pred             HHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence            33445554  3456667788888999999999999999999999998888888888878888888888899999998888


Q ss_pred             cchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      ++.....+.|.+|+++|+++.++.+....+|..++|.+.+.+    ||+..|.+.+++.++..+..+
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999999999999999999988888765    899999988887777666554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.48  E-value=9e-13  Score=120.74  Aligned_cols=150  Identities=13%  Similarity=0.158  Sum_probs=108.8

Q ss_pred             cchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHH
Q 020792           60 PAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV--IIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        60 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l  136 (321)
                      ...| ++++++|++..+.++..++..++..++.+++|+++||+|||+.+.....+..++..  .....++.+...+.+++
T Consensus       279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (467)
T PRK09556        279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA  358 (467)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3344 56778999999999999999999999999999999999999877665444443332  22233456666677888


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH-HHHHHHHhhcch----------------hhHHHHHHhHHHH
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----------------NWRILALIGTIPC  199 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----------------~w~~~~~~~~~~~  199 (321)
                      .|++.............|.+|++.||++.++.+....+ |..++|.+.+++                +|+..|++.++..
T Consensus       359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~  438 (467)
T PRK09556        359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA  438 (467)
T ss_pred             HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence            88654333333446777999999999999999888775 656665554332                5899998887777


Q ss_pred             HHHHHHhhcc
Q 020792          200 LVQLIGLCFI  209 (321)
Q Consensus       200 ~~~~~~~~~~  209 (321)
                      +++.+..+++
T Consensus       439 ~~~~~~~~~~  448 (467)
T PRK09556        439 IGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHH
Confidence            7766655443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.48  E-value=2.2e-12  Score=118.54  Aligned_cols=154  Identities=17%  Similarity=0.075  Sum_probs=111.9

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh--hh-H-HHHHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AA-W-WLDLGR  134 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~  134 (321)
                      ..+.|.+.++.|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++.+...  +. + ....+.
T Consensus       291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~  370 (479)
T PRK10077        291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM  370 (479)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            3455677788898888777888888889999999999999999999999999999888877765431  21 1 222233


Q ss_pred             HHHhhhhhh-hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhc----------chhhHHHHHHhHHHHHHHH
Q 020792          135 LLVGYGMGL-LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA----------FLNWRILALIGTIPCLVQL  203 (321)
Q Consensus       135 ~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~----------~~~w~~~~~~~~~~~~~~~  203 (321)
                      ++.+++.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+..          ..+|++.|++.+++.++..
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (479)
T PRK10077        371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA  450 (479)
T ss_pred             HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence            334444333 23667899999999999999999998888888776643332          2367778888777666665


Q ss_pred             HHh-hcccCC
Q 020792          204 IGL-CFIPES  212 (321)
Q Consensus       204 ~~~-~~~~e~  212 (321)
                      +.. ++.||+
T Consensus       451 ~~~~~~~~e~  460 (479)
T PRK10077        451 LFMWKFVPET  460 (479)
T ss_pred             HHHHhccccC
Confidence            554 345776

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.48  E-value=1.5e-12  Score=116.21  Aligned_cols=140  Identities=17%  Similarity=0.135  Sum_probs=120.9

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      ..+++|.+..+.|.+.++..++..++.++.+++.||+|+|+.+.++.++..+...+.++.++.+.+++..++.|+..+..
T Consensus       231 ~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~  310 (382)
T TIGR00902       231 YWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVC  310 (382)
T ss_pred             HHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence            33568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhccCCCccchhHHhHHH-HHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      .+....++.+. |+++|++..++++ ....+|..+++.+++++    ++ ..|+..+.+.++.++..
T Consensus       311 ~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       311 HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            99999999998 8888999999886 46778888888888776    54 45666666666555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.47  E-value=4.1e-13  Score=119.74  Aligned_cols=136  Identities=21%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHH--HHHHH--hhhhHHHHHHHHHHhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW--VIIVF--SKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~G~~  140 (321)
                      +++++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+..  .+..+  .++.+.+.+..++.|++
T Consensus       246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  325 (394)
T TIGR00883       246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALI  325 (394)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            457789999999999999999999999999999999999998776554444333  22222  24566677778888988


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhH-HHHHHHHHHHHHHHhhcch----h-hHHHHHHhHHHHH
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCL  200 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~  200 (321)
                      .+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+++.+    + |+..++......+
T Consensus       326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            888899999999999999999998887 4556667887888887765    5 7777666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.47  E-value=5e-12  Score=109.89  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=125.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHH
Q 020792           31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFS  110 (321)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  110 (321)
                      .+..+++|..++...+..+..+....-+++...+....+| +.+..-|+..++.+.+....+++-|+.||+|-|..++++
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg  115 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG  115 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence            3566788888888888888777776666666666777788 777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh------hhhH--HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHh
Q 020792          111 DIVCIIGWVIIVFS------KAAW--WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI  182 (321)
Q Consensus       111 ~~~~~~~~~~~~~~------~~~~--~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i  182 (321)
                      .++.+++..+-..+      +.++  ....+..+.+.++-.....-.-+..-|||+++|..+..+..++..+|..++.++
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            99999999877664      2334  566778888888766666556677779999999999999888888888887777


Q ss_pred             hcch
Q 020792          183 GAFL  186 (321)
Q Consensus       183 ~~~~  186 (321)
                      ...+
T Consensus       196 ppil  199 (480)
T KOG2563|consen  196 PPIL  199 (480)
T ss_pred             ccee
Confidence            6554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.46  E-value=6.3e-12  Score=112.01  Aligned_cols=222  Identities=16%  Similarity=0.218  Sum_probs=138.1

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-RRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV  137 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (321)
                      .|+.+...++.|+|..|+|.+.++..+..+++++++|+++||.+ +|+.+.+..++.++........++++.+++..++.
T Consensus        22 ~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~  101 (400)
T PF03825_consen   22 LPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLF  101 (400)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45566677778999999999999999999999999999999986 66777777777777777777788888888888888


Q ss_pred             hhhhhhhcchhhhhhhccCCCccc--hhHHhHHHHHHHHHHHH-HHHhhcchhh---HHHHHHhHHHHHHHHHHhhcccC
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSM-TYLIGAFLNW---RILALIGTIPCLVQLIGLCFIPE  211 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~-~~~i~~~~~w---~~~~~~~~~~~~~~~~~~~~~~e  211 (321)
                      .+...+..+...++..+....+.+  |+.=.+-..++.+++.. +..+.+..++   ...+++.++..++.....+.+|+
T Consensus       102 ~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~  181 (400)
T PF03825_consen  102 SFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPK  181 (400)
T ss_pred             HHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence            888888888888888777753211  33333333333333221 2233333322   23455555555444444566777


Q ss_pred             ChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhH
Q 020792          212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGI  291 (321)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (321)
                      .|+.   +..++                            +.++....+..+++|+|.....++..++...    .....
T Consensus       182 ~~~~---~~~~~----------------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~----~~~~~  226 (400)
T PF03825_consen  182 TPPK---RSAKE----------------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGI----SHAAY  226 (400)
T ss_pred             Cccc---cccCC----------------------------CcccccchHHHHHhcCccHHHHHHHHHHHHH----HHHHH
Confidence            6521   00000                            0000111123457777655443333333322    34567


Q ss_pred             HHcHHHHHhhcC-CCCchHHHHHHH
Q 020792          292 AFYASSIFISAG-FSGSIGMIAMVV  315 (321)
Q Consensus       292 ~~~~~~~~~~~g-~s~~~~~~~~~~  315 (321)
                      ..|.+.|+++.| .+....+.+.++
T Consensus       227 ~~f~~~yl~~~gg~~~~~~g~~~~l  251 (400)
T PF03825_consen  227 YTFFSIYLQELGGYSGSTIGILWAL  251 (400)
T ss_pred             HHHHHHHHHHcccchhhHHHHHHHH
Confidence            788888999986 666655554444

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.46  E-value=5e-13  Score=121.88  Aligned_cols=144  Identities=11%  Similarity=0.081  Sum_probs=116.6

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc--cchHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMGF--SDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      .+|.+.+++|.+..+.+++.++..++..+++++.|+++||.  ++|+...+  +.+..+++.++....++++.+++.+++
T Consensus       263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~  342 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF  342 (455)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            34445566899999999999999999999999999999973  34443333  333344445556667888888889999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHH
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLI  204 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~  204 (321)
                      .|++.+...+...+++.|.+|++++++..++++....+|..++|.+.+.+     +|++.|++.+++.++..+
T Consensus       343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999988899999999999999999999999999999999999998865     588888888877665544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.46  E-value=1.1e-12  Score=116.76  Aligned_cols=142  Identities=17%  Similarity=0.200  Sum_probs=103.2

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchH--HHHH------HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG--TMGF------SDIVCIIGWVIIVFSKAAWWLDLGRL  135 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~--~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (321)
                      ++.+++|.+..+.+++.+...++..++.++.|+++||+|||+  ....      +.++.++........++.+.......
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA  320 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            456678999999999999999999999999999999999996  1111      11111111111111223344444444


Q ss_pred             HHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h-hHHHHHHhHHHHHHHHHHh
Q 020792          136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       136 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~~~~~~~  206 (321)
                      +.+++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+    + |+..+++.++..++..+..
T Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            4444444 7888899999999999999999999999999999999888766    5 8888888877766665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.46  E-value=1.8e-12  Score=118.59  Aligned_cols=155  Identities=15%  Similarity=0.044  Sum_probs=117.4

Q ss_pred             cccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----hh------h
Q 020792           58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SK------A  126 (321)
Q Consensus        58 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------~  126 (321)
                      .....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++     .+      +
T Consensus       303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (481)
T TIGR00879       303 IMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG  382 (481)
T ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence            344566677888999988899999999999999999999999999999999988887777766652     11      2


Q ss_pred             hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHH
Q 020792          127 AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ  202 (321)
Q Consensus       127 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~  202 (321)
                      ...+....++.+.......+....++.|.+|+++|+++.++.+....+|.+++|.+.+.+    +|++.|++.++++++.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~  462 (481)
T TIGR00879       383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG  462 (481)
T ss_pred             HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence            222222233323222233466677889999999999999999999999999998887665    7888888888887776


Q ss_pred             HHHhh-cccCC
Q 020792          203 LIGLC-FIPES  212 (321)
Q Consensus       203 ~~~~~-~~~e~  212 (321)
                      .+..+ +.||+
T Consensus       463 ~i~~~~~~~~~  473 (481)
T TIGR00879       463 LIFVYFFLPET  473 (481)
T ss_pred             HHHHheecccC
Confidence            66654 45665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.45  E-value=5.4e-13  Score=119.94  Aligned_cols=133  Identities=20%  Similarity=0.240  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhcc
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI  155 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  155 (321)
                      .+.+.++..++..++.+..|+++||+|||+.+..+.++.+++.+...+.++.+.+.+.+++.|++.+...+.....+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45666777888889999999999999999999999888888777777777888888899999999999899888899999


Q ss_pred             CCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc
Q 020792          156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       156 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      .|+++||+..+..+....+|..++|.+++.+    +|+..|++.+++.++..+..++
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999899999999888765    8999999988887777665543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.43  E-value=5.7e-12  Score=112.41  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=114.3

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM  141 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  141 (321)
                      +|.+.++.|.+.++.++..+...++..+++++.|++.||+|+|+++..+....+++.....  . ........++.|++.
T Consensus       223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~  299 (381)
T PRK03633        223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAG  299 (381)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHH
Confidence            4545566799999999999999999999999999999999999999888777777655433  2 223345667778777


Q ss_pred             hhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      +..++.....+.|..|+++++...+..+....+|..++|.+++++    +|++.|.+.+.+.++..+..+..
T Consensus       300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            777888889999999988888888888888889999999888776    78888888777776665554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.43  E-value=2.5e-12  Score=116.07  Aligned_cols=148  Identities=17%  Similarity=0.112  Sum_probs=121.3

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      ..+.+|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.|++.+..
T Consensus       250 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  329 (417)
T PRK10489        250 ADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAIS  329 (417)
T ss_pred             HHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            44448999999999999999999999999999999988888888888888888877777888877788888899988877


Q ss_pred             cchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHH-HHHHhhcccCC
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV-QLIGLCFIPES  212 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~-~~~~~~~~~e~  212 (321)
                      .+...+++.|..|++.||++.++++....+|..++|.+.+.+    +++..++..+.+.++ ..+....+++.
T Consensus       330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        330 SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            777788999999999999999999988888888888888766    666677666655444 34444555665

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.42  E-value=1.2e-11  Score=110.69  Aligned_cols=150  Identities=15%  Similarity=0.164  Sum_probs=112.6

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhh
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYG  140 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~  140 (321)
                      .|.+.+++|.+..+.+...+++.++..++.++.|++.||+|||+.+..+..+.+++..+....+ +...+  ..++.|++
T Consensus       228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g  305 (393)
T PRK09705        228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLG  305 (393)
T ss_pred             HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHh
Confidence            3434455899999999999999999999999999999999999999888777777665544322 22222  23456777


Q ss_pred             hhhhcchhhhhhhccCC-CccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHh-hcccCCh
Q 020792          141 MGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGL-CFIPESP  213 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~-~~~~e~~  213 (321)
                      .+..++.......+.++ +++|++..++.+....++..++|.+.+++     +|...|++.+...++..+.. .+.||++
T Consensus       306 ~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        306 LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             ccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            77777877777777775 56789999999999888888898888776     46777777776666655554 4557763

>PRK03545 putative arabinose transporter; Provisional

Probab=99.41  E-value=1e-11  Score=111.06  Aligned_cols=144  Identities=13%  Similarity=0.211  Sum_probs=111.5

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHhhhh
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW-VIIVFSKAAWWLDLGRLLVGYGM  141 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~  141 (321)
                      |++.+++|.+..+.+++.+...++..++.++.|+++||+|||.... +..+..++. .+....++.+.+.++.++.|++.
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~  308 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI  308 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            4466678999999999999999999999999999999999887544 444333433 33445667777888888889887


Q ss_pred             hhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc
Q 020792          142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      +...+.....+.|..| ++|++++++++....+|..++|.+++.+    +++..|++.+.+.+++++..+.
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            7766777788888876 5789988888887777777777776654    8999999888887777666543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.41  E-value=9.2e-13  Score=121.63  Aligned_cols=138  Identities=15%  Similarity=0.148  Sum_probs=105.0

Q ss_pred             chhccc-cccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Q 020792           61 AQSGIT-NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--KAAWWLDLGRLLV  137 (321)
Q Consensus        61 ~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  137 (321)
                      .+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++....  .+.+.+.+..++.
T Consensus       297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (496)
T PRK03893        297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQ  376 (496)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            445444 6899999999999999999999999999999999999999888877666655443332  3334444444554


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHH
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP  198 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~  198 (321)
                      ++......+..+.++.|.+|+++|++.+++.+....+|..++|.+++.+    +|+..+...+..
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        377 QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            4433344567778999999999999999999988889988888887765    777776654443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.40  E-value=1.1e-11  Score=114.73  Aligned_cols=153  Identities=15%  Similarity=0.068  Sum_probs=101.8

Q ss_pred             chhccccccCCChhhHHH------------HHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhh--
Q 020792           61 AQSGITNDLGLSVAEYSL------------FGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA--  126 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--  126 (321)
                      ..|.+.++.|++..+.+.            ...+..++..++.++.++++||+|||++++++.++.+++..+.++..+  
T Consensus       310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~  389 (502)
T TIGR00887       310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL  389 (502)
T ss_pred             ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355566677776442211            234445566778899999999999999998888877777665554321  


Q ss_pred             --hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch--------------hhHH
Q 020792          127 --AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------NWRI  190 (321)
Q Consensus       127 --~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~  190 (321)
                        ...+...-+...++..+..+....+.+|.+|++.|+++.++.+....+|.+++|.+.+.+              ++..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  469 (502)
T TIGR00887       390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH  469 (502)
T ss_pred             chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence              111111111112222233556677889999999999999999999999998888776544              2345


Q ss_pred             HHHHhHHHHHHHHHHhhcccCCh
Q 020792          191 LALIGTIPCLVQLIGLCFIPESP  213 (321)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~e~~  213 (321)
                      .|++.+++.++..+..+++||++
T Consensus       470 ~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       470 VLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             HHHHHHHHHHHHHHHheEeccCC
Confidence            67777777776666666779983

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00788 fbt folate/biopterin transporter

Probab=99.40  E-value=1e-11  Score=113.42  Aligned_cols=151  Identities=20%  Similarity=0.171  Sum_probs=109.3

Q ss_pred             cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc-----chHHHHHHHHHHH-HHHHHHHHhhhhH-HHHH
Q 020792           60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-----RRGTMGFSDIVCI-IGWVIIVFSKAAW-WLDL  132 (321)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~  132 (321)
                      ...+.+.+++|++.++.+.+.++..+...+-.+ +|+++||++     ||+.++++.++.+ ++....+..++.. ...+
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~  125 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAA  125 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            344557888999999999999999999999655 999999998     7777777776663 4333334334433 3344


Q ss_pred             HHHHHhhhhhhhcchhhhhhhccCCCccchh---HHhHHHHHHHHHHHHHHHhhcc----hhhHHHHHHhHHHHHHHHHH
Q 020792          133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGG---FTTVHQLMICIGVSMTYLIGAF----LNWRILALIGTIPCLVQLIG  205 (321)
Q Consensus       133 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~~~~~~g~~~~~~i~~~----~~w~~~~~~~~~~~~~~~~~  205 (321)
                      ..++.+++.+...++.-++..|..+ +++..   ..+.......+|..+++.+++.    .+|+..|++.+++.++..+.
T Consensus       126 ~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~  204 (468)
T TIGR00788       126 FIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV  204 (468)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence            7889999999999999999999998 44433   2333333334566666555554    48999999988887777655


Q ss_pred             hhcccCC
Q 020792          206 LCFIPES  212 (321)
Q Consensus       206 ~~~~~e~  212 (321)
                      .++++|+
T Consensus       205 ~~~~~E~  211 (468)
T TIGR00788       205 SNLSKER  211 (468)
T ss_pred             HHhcccc
Confidence            6677775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.40  E-value=4.4e-12  Score=113.68  Aligned_cols=123  Identities=22%  Similarity=0.276  Sum_probs=102.5

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV-IIVFSKAAWWLDLGRLLVGYGMG  142 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~~  142 (321)
                      ++.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+... +....++.+.+.+..++.|+..+
T Consensus       264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence            46667899999999999999999999999999999999999998888766533332 33344566666666677777777


Q ss_pred             hhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ...+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            77788889999999999999999999999999999999888777

>TIGR00898 2A0119 cation transport protein

Probab=99.39  E-value=8.1e-12  Score=115.64  Aligned_cols=136  Identities=19%  Similarity=0.162  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHhhhhhhhcchhhhhhhcc
Q 020792           78 LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGYGMGLLSYVVPVYIAEI  155 (321)
Q Consensus        78 ~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~~~~~~~~~~~~~  155 (321)
                      +...+..+..+++.++.+++.||+|||+++.++.++.+++.++..+.++.  +...+..++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445567777888999999999999999999999888888877776543  4455556666777777788889999999


Q ss_pred             CCCccchhHHhHHHHHHHHHHHHHHHhhcch--hhHHHHHHhHHHHHHHHHHhhcccCCh
Q 020792          156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPESP  213 (321)
Q Consensus       156 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e~~  213 (321)
                      +|++.|+++.++.+....+|.+++|.+.+..  ++..++++.++..++..+..+++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            9999999999999999999999999988722  456677777777777777777889873

>TIGR00897 2A0118 polyol permease family

Probab=99.37  E-value=1.9e-11  Score=109.84  Aligned_cols=147  Identities=14%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHH-HHHHHHHHHHHHHHH-----hhhhHHHHHHH
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-FSDIVCIIGWVIIVF-----SKAAWWLDLGR  134 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~  134 (321)
                      ..|.+.+++|++..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++......     .++.+...+..
T Consensus       244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (402)
T TIGR00897       244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA  323 (402)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            445566779999999999999999999999999999999999988764 333333333333222     24566667778


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      ++.|++.+...+ ....+.|..| ++|+++.++.+....+|..++|.+.+.+    ||+..+++.+++.++..+...|+
T Consensus       324 ~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       324 IALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            888888776544 4456677655 5799999999999999999999888766    88889998888777766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.37  E-value=6.6e-12  Score=115.15  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=105.1

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh----hccc-hHHHHHHHHHHHHHHHHHHHhh------hhHHHH
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGR-RGTMGFSDIVCIIGWVIIVFSK------AAWWLD  131 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~~~  131 (321)
                      .++.+.+|++...+|.+..+.-+..++..|++|+++|    |+|| |+.++++.+..+++..++...+      .+..++
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~  110 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC  110 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            3466778999999999999999999999999999999    6698 5566677777777765554322      133455


Q ss_pred             HHHHHHhhhhhhhcchhhhhhhccC-CCccchhHHhHHHHHHHHHHHHHHHhhc----c-------hhhHHHHHHhHHHH
Q 020792          132 LGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGA----F-------LNWRILALIGTIPC  199 (321)
Q Consensus       132 ~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~----~-------~~w~~~~~~~~~~~  199 (321)
                      +..++.+++.........++..|+. ++++|.+..+....+..+|..+.+.+..    .       .+|+....+.+++.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~  190 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF  190 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            5566777788788888889999998 5889999888866666665444332221    1       14666666666655


Q ss_pred             HHHHHHhh-cccCC
Q 020792          200 LVQLIGLC-FIPES  212 (321)
Q Consensus       200 ~~~~~~~~-~~~e~  212 (321)
                      ++..+..+ ..+|.
T Consensus       191 ~~~~~~~~~~~~e~  204 (473)
T PRK10429        191 IVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHcCceec
Confidence            55444433 35654

>TIGR00895 2A0115 benzoate transport

Probab=99.37  E-value=4.6e-12  Score=113.20  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=104.9

Q ss_pred             cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 020792           60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  139 (321)
                      ...|++.+++|.+..+.++..+...++..++.++.|+++||+|||+.+....+..+.+..+.....+.+...+..++.|+
T Consensus       271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  350 (398)
T TIGR00895       271 NWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF  350 (398)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            34556778899999999999999999999999999999999999955544444443333333335666777788889999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +.+...+...+++.|.+|+++|+++.++......+|..++|.+.+.+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       351 FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999999887653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.37  E-value=6.2e-12  Score=115.38  Aligned_cols=146  Identities=10%  Similarity=-0.007  Sum_probs=106.5

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccch-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR-------GTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      ++.+++|++..+.+.+.++..++..++.+++|+++||+|||       ..+.+..++.+++.++....++.+...+..++
T Consensus       278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l  357 (476)
T PLN00028        278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL  357 (476)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            45677899999999999999999999999999999999875       23333333333434444455555555555566


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc---hhhHHHHHHhHHHHHHHHHHhhccc
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF---LNWRILALIGTIPCLVQLIGLCFIP  210 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~---~~w~~~~~~~~~~~~~~~~~~~~~~  210 (321)
                      .+++.+...+...+++.+..| ++||...++.+.+..+|+.++|.+...   .+|+..|++.+++.+++.+..++++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        358 FSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            666655555556666677654 679999999988888888888877542   2689999988888887777766654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.35  E-value=1.4e-11  Score=110.52  Aligned_cols=137  Identities=9%  Similarity=0.057  Sum_probs=112.6

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhh
Q 020792           70 GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVP  149 (321)
Q Consensus        70 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  149 (321)
                      +.+....|.+.++..+...++.+..|++.||+|||+.+.++.++.++...+....++.+.+.+..++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667789999999999999999999999999999999999988888877777788888888889999988776666666


Q ss_pred             hhhhccCCCccchhHHhH-HHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh
Q 020792          150 VYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       150 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      .+..+..+++.+++..+. ++....+|..+++.+++++    ||+..|.+.+++.++..++.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            778888888888776665 5677788888888777665    88999998888776665544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.35  E-value=4.5e-11  Score=108.65  Aligned_cols=150  Identities=24%  Similarity=0.270  Sum_probs=130.5

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccch--HHHHHHHHHHHHHHHHHHH--------hhhhHHHHH
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGFSDIVCIIGWVIIVF--------SKAAWWLDL  132 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~  132 (321)
                      .+..+++|++..+...+..+..+..++|++++|++.||+|.|  ++++++++++.+..+...+        .++.+.+.+
T Consensus       306 i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~  385 (477)
T PF11700_consen  306 IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV  385 (477)
T ss_pred             HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence            346678999999999999999999999999999999999999  8888888887666555444        567788999


Q ss_pred             HHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhh
Q 020792          133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       133 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      ..++.|++.|+.++..-++.+|+.|+++.+...|++.......+.++|++.+.+     +-|+.+....++.++.+++.+
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999988776     477888887777777777777


Q ss_pred             cccCC
Q 020792          208 FIPES  212 (321)
Q Consensus       208 ~~~e~  212 (321)
                      +++.+
T Consensus       466 ~v~~~  470 (477)
T PF11700_consen  466 FVDVE  470 (477)
T ss_pred             hccch
Confidence            76654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.35  E-value=3.4e-11  Score=109.21  Aligned_cols=148  Identities=14%  Similarity=0.024  Sum_probs=96.5

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH--H--hhhhHHHHHHHHHHhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV--F--SKAAWWLDLGRLLVGY  139 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~G~  139 (321)
                      ++.+++|.+..+.+...++..++..+++++.|+++||+|||+++.++.++.++......  .  .++....+..-.+.++
T Consensus       269 ~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (432)
T PRK10406        269 YLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALL  348 (432)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            35667899999999988888888899999999999999999988776655433332221  1  1222222222222223


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH-HHHHHHHhhcch---h-hHHHHHHhHHHHHHHHHHhhcccC
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL---N-WRILALIGTIPCLVQLIGLCFIPE  211 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~---~-w~~~~~~~~~~~~~~~~~~~~~~e  211 (321)
                      ..+...+....+++|++|++.|+++.++.+...++ +....|.+...+   + |...+++.++..++..+..+++++
T Consensus       349 ~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        349 IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344455678899999999999999998765443 333466655544   3 555666666666666655555433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.35  E-value=4.4e-11  Score=109.18  Aligned_cols=144  Identities=15%  Similarity=0.154  Sum_probs=97.5

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc--cchHHH-HHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTM-GFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVG  138 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G  138 (321)
                      ++++++|++..+.++...++.++..++.++.|+++||+  |||... .....+..++..+...  ..+.+...++.++.|
T Consensus       279 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g  358 (452)
T PRK11273        279 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIG  358 (452)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence            35666899999999999999999999999999999999  555432 2222333333322222  233444444455555


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHH-HHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS-MTYLIGAFL----NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      .+..........+..|.+|++.||++.++.+....+|.. .+|.+.+.+    ||+..|++.++.++++++...
T Consensus       359 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        359 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            543332333345678999999999999999887777654 467666554    899999888877776665554

>PRK09669 putative symporter YagG; Provisional

Probab=99.34  E-value=2.2e-11  Score=110.89  Aligned_cols=151  Identities=12%  Similarity=0.067  Sum_probs=107.2

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh----ccch-HHHHHHHHHHHHHHHHHHHhhh------hHHH
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRR-GTMGFSDIVCIIGWVIIVFSKA------AWWL  130 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~  130 (321)
                      ..++.+.+|++..++|.+.++..+..++..|+.|+++||    +||| +.++.+.+..+++..+....++      .+.+
T Consensus        33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~  112 (444)
T PRK09669         33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA  112 (444)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            445778899999999999999999999999999999998    7875 4555676776666655444332      3455


Q ss_pred             HHHHHHHhhhhhhhcchhhhhhhccC-CCccchhHHhHHHHHHHHHHHHHHHh----hcc-------hhhHHHHHHhHHH
Q 020792          131 DLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLI----GAF-------LNWRILALIGTIP  198 (321)
Q Consensus       131 ~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i----~~~-------~~w~~~~~~~~~~  198 (321)
                      ++..++.+.+.........++.+|+. ++++|++..+....+..+|..+++.+    ...       .+|+..+.+.+++
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii  192 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL  192 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            66666677776677777788999987 56779888787777777766555432    222       2677777777776


Q ss_pred             HHHHHHHhh-cccCC
Q 020792          199 CLVQLIGLC-FIPES  212 (321)
Q Consensus       199 ~~~~~~~~~-~~~e~  212 (321)
                      .++..+..+ ..+|.
T Consensus       193 ~~v~~~~~~~~~~e~  207 (444)
T PRK09669        193 GVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHhCCeEEe
Confidence            665554443 34443

>PRK10504 putative transporter; Provisional

Probab=99.34  E-value=2.7e-11  Score=111.18  Aligned_cols=126  Identities=13%  Similarity=0.121  Sum_probs=103.4

Q ss_pred             chhcc-ccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHH
Q 020792           61 AQSGI-TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS---KAAWWLDLGRLL  136 (321)
Q Consensus        61 ~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l  136 (321)
                      ..|++ +..+|.++.+.++......++..++.++.|++.||+|||+++..+.++.++...+..+.   ++.+.+.+..++
T Consensus       283 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (471)
T PRK10504        283 MTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFL  362 (471)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            34434 34589999999999999999999999999999999999999998988877776665553   333444555677


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      .|++.+..++....++.+..|++.|+.+.++.+....+|..+++.+.+.+
T Consensus       363 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        363 QGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999999999999999999999999988888887655

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.33  E-value=2e-11  Score=110.45  Aligned_cols=126  Identities=15%  Similarity=0.118  Sum_probs=93.7

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHh
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVG  138 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G  138 (321)
                      .+|.+.++.|.+..+.+...+...++..++.++.|++.||+|||+.+..+.++.++..++....+  +...+.+..+..+
T Consensus       253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (426)
T PRK12307        253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLM  332 (426)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            34445556789999999999999999999999999999999999999888877666655444322  2222222222222


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ++..+..+..+.++.|.+|+++|+++.++......+|..++|.+.+++
T Consensus       333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence            232333455677889999999999999999998899999999888776

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.33  E-value=1.4e-11  Score=108.75  Aligned_cols=175  Identities=21%  Similarity=0.275  Sum_probs=138.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhhcccccccchhccccc----cCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHH
Q 020792           33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITND----LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTM  107 (321)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l  107 (321)
                      .++..+.++..=..--|.++........+   +..+    +|++++++.-+.+.+..-.-+..+++||++||+ |+|+.+
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Y---l~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILY---LYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHH---HHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            44555555555444455554444333333   4444    459999988888888777778889999999997 999999


Q ss_pred             HHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCcc--chhHHhHHHHHHHHHHHHHHHhh
Q 020792          108 GFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      ..+.++++++.++.+.+.  +...+.++-.+.++|.|..=+....+++|.+|+++  |-...++++++.++|+.++|.+.
T Consensus        96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~  175 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT  175 (498)
T ss_pred             HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence            999999999999999884  77888999999999999999999999999998654  46778888889999999999888


Q ss_pred             cch----hhHHHHHHhHHHHHHHHHHhhccc
Q 020792          184 AFL----NWRILALIGTIPCLVQLIGLCFIP  210 (321)
Q Consensus       184 ~~~----~w~~~~~~~~~~~~~~~~~~~~~~  210 (321)
                      +++    +|+..|...++-..+.++..+..+
T Consensus       176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            776    899999988887777777665544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.33  E-value=9.2e-11  Score=100.09  Aligned_cols=152  Identities=16%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 020792           60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  139 (321)
                      |+.-.+-+++|++..|++.+....++...+.+++.|.++||+|||+.-+..+++.+++++ +-..++++.++++|++.|+
T Consensus        55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   55 PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHH
Confidence            333345578999999999999999999999999999999999999999999999988885 4556889999999999999


Q ss_pred             hhhhhcchhhhhh-hcc----CCCccchhHHhHHH-HHHHHHHHHHHHhhcch----h--hHHHHHHhHHHHHHHHHHhh
Q 020792          140 GMGLLSYVVPVYI-AEI----TPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----N--WRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       140 ~~~~~~~~~~~~~-~~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~--w~~~~~~~~~~~~~~~~~~~  207 (321)
                      +....+.+--+++ .|.    +|++..+...+... ..+.+-.+.+..++..+    +  -..+|.....+.+++.++..
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence            9988888776544 444    23222222222222 22222233344444333    3  35678877766666655543


Q ss_pred             -cccCC
Q 020792          208 -FIPES  212 (321)
Q Consensus       208 -~~~e~  212 (321)
                       ..+|+
T Consensus       214 ~~W~EN  219 (354)
T PF05631_consen  214 KTWPEN  219 (354)
T ss_pred             hccccc
Confidence             34565

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.32  E-value=4.7e-11  Score=108.39  Aligned_cols=144  Identities=15%  Similarity=0.128  Sum_probs=98.8

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc--cc-hHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GR-RGTMGFSDIVCIIGWVIIV--FSKAAWWLDLGRLLVG  138 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Gr-r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~G  138 (321)
                      ++.+++|++..+.+...+...++..++.++.|+++||+  ++ |.......+...+......  ...+.....+..++.|
T Consensus       269 ~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  348 (434)
T PRK11663        269 YMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIG  348 (434)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            35577899999999999999999999999999999999  33 3332222212111111111  1223333334444455


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      ++...........+.|.+|+++|+++.++.+....+|..++|.+.+.+    +|+..|++.+++.++..+..+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        349 FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            443322333456778999999999999999999999999998777665    899999888888776665544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.32  E-value=9.3e-11  Score=104.64  Aligned_cols=138  Identities=15%  Similarity=0.163  Sum_probs=111.5

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      +.++.|.+..+.|.+.++..++..+..++.|++.||+|+|+.+..+.++.+++.++.+..++.+.+++..++.|++.+..
T Consensus       231 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  310 (382)
T PRK11128        231 YWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVC  310 (382)
T ss_pred             HHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            33568999999999999999999999999999999999999999999998888888888889998899999999999988


Q ss_pred             cchhhhhhhccCCCccchhHHhHHH-HHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHH
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI  204 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~  204 (321)
                      .+....++.+. +++++++..+..+ ....+|..++|.+++.+    ++ ..++..+++.++.++
T Consensus       311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            88888888887 4555688888776 55566777788777766    55 355555555554433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.31  E-value=9.7e-11  Score=105.11  Aligned_cols=153  Identities=15%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh---hh-h--H---HH
Q 020792           60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS---KA-A--W---WL  130 (321)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~-~--~---~~  130 (321)
                      .+...+.++-|++..++-+.+....+...+..+++.++.||+|||+.++++..+..++.+++...   .+ .  |   ..
T Consensus       291 ~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~  370 (485)
T KOG0569|consen  291 FYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC  370 (485)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34445788889999999999999999999999999999999999999999999988888766642   11 1  1   12


Q ss_pred             HHHHHHHhhhhh-hhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHH----HHhhcchhhHHHHHHhHHHHHHHHH-
Q 020792          131 DLGRLLVGYGMG-LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----YLIGAFLNWRILALIGTIPCLVQLI-  204 (321)
Q Consensus       131 ~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~i~~~~~w~~~~~~~~~~~~~~~~-  204 (321)
                      +++.++..++.+ +..|+.+-+.+|++|++.|+.+.++......+...+-    |.+...+|- +.|++..+.+++..+ 
T Consensus       371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~  449 (485)
T KOG0569|consen  371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIY  449 (485)
T ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHH
Confidence            233333333222 2367778899999999999999888877766654433    344444444 556655665555544 


Q ss_pred             HhhcccCCh
Q 020792          205 GLCFIPESP  213 (321)
Q Consensus       205 ~~~~~~e~~  213 (321)
                      .+..+|||+
T Consensus       450 ~~~~lPETk  458 (485)
T KOG0569|consen  450 LYRYLPETK  458 (485)
T ss_pred             HHHhCcccC
Confidence            446789993

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.31  E-value=7.5e-11  Score=97.30  Aligned_cols=152  Identities=17%  Similarity=0.276  Sum_probs=115.6

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-------hhhHHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-------KAAWWLD  131 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~  131 (321)
                      +.+-|.+++.+|+|.+|...+.+.-.+|..+| ++.|.+.||+|++.++.+|.+...++..+...+       .++|.+.
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            44556699999999999999999999999874 888999999999999999999999998877652       4567787


Q ss_pred             HHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHH-HHHHHHHHhh
Q 020792          132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTI-PCLVQLIGLC  207 (321)
Q Consensus       132 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~-~~~~~~~~~~  207 (321)
                      +..++.|.+.+...+.......+.||. +||++.++.-...++++.+-..+...+   +-...+.+.+. ..++.++..+
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~  179 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMF  179 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh
Confidence            778888888777777777778899984 799999999999988877655554443   22223333333 3444455555


Q ss_pred             cccCC
Q 020792          208 FIPES  212 (321)
Q Consensus       208 ~~~e~  212 (321)
                      +++..
T Consensus       180 ~vr~~  184 (250)
T PF06813_consen  180 FVRPV  184 (250)
T ss_pred             heecc
Confidence            55443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.31  E-value=8.7e-12  Score=110.06  Aligned_cols=125  Identities=15%  Similarity=0.209  Sum_probs=110.3

Q ss_pred             hhcccc-ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhh
Q 020792           62 QSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA-AWWLDLGRLLVGY  139 (321)
Q Consensus        62 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~  139 (321)
                      .|.+.+ .+|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++..+..+.++ .+.+.+..++.|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (365)
T TIGR00900       234 FPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGV  313 (365)
T ss_pred             hHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence            344444 48999999999999999999999999999999999999999888887787777777664 7888888999999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +.+...+....++.|..|+++|++..++.+....+|..++|.+.+.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       314 GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887664

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.30  E-value=8.6e-11  Score=108.16  Aligned_cols=151  Identities=10%  Similarity=0.164  Sum_probs=112.3

Q ss_pred             hhccccccCCChhhHHHHHH-HHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HHh-hhhHHHHHHHHH
Q 020792           62 QSGITNDLGLSVAEYSLFGS-ILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFS-KAAWWLDLGRLL  136 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l  136 (321)
                      .|++.+++|++.++.++... ...++.+++.+++|+++||+|+|+.+.++.++.+++..+.   +.. ++.+.+.+.-++
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l  325 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF  325 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            34466678999999999874 6668999999999999999999988777666555443322   232 344444555566


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcccCC
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES  212 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~  212 (321)
                      ..+..|...+...++..+..+++.+++..++.+....+|..+++.+.+.+    ||+..|.+.+++.+++++...+++++
T Consensus       326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555555666788888999999899999999998888887776666655    89999998888888877766655543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.30  E-value=1.8e-11  Score=110.94  Aligned_cols=151  Identities=22%  Similarity=0.273  Sum_probs=114.8

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh----hccchHH-HHHHHHHHHHHHHHHHHh-h-------hh
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRGT-MGFSDIVCIIGWVIIVFS-K-------AA  127 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~~  127 (321)
                      ..+++.+.+|+++...|.+..+..+..++..|+.|.++|    |+|||+. ++++.+..+++.+++... +       ..
T Consensus        24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~  103 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL  103 (428)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence            344577788999999999999999999999999999999    8997765 456778888877776654 3       22


Q ss_pred             HHHHHHHHHHhhhhhhhcchhhhhhhccCC-CccchhHHhHHHHHHHHHHHHHHHhhcc----h-------hhHHHHHHh
Q 020792          128 WWLDLGRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAF----L-------NWRILALIG  195 (321)
Q Consensus       128 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~----~-------~w~~~~~~~  195 (321)
                      ..+.+..++..++.........++..|+.+ +++|.+..+....+..+|..+...+...    +       +|++..++.
T Consensus       104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~  183 (428)
T PF13347_consen  104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL  183 (428)
T ss_pred             HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence            345666677788888888888999999997 5689999999888888877544433322    2       488888877


Q ss_pred             HHHHHHHHHHh-hcccC
Q 020792          196 TIPCLVQLIGL-CFIPE  211 (321)
Q Consensus       196 ~~~~~~~~~~~-~~~~e  211 (321)
                      +++.++..+.. +..+|
T Consensus       184 ~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  184 AIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHhhhhhheeee
Confidence            77766665555 34565

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.29  E-value=1.1e-10  Score=101.88  Aligned_cols=148  Identities=15%  Similarity=0.216  Sum_probs=118.4

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-SKAAWWLDLGRLLV  137 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  137 (321)
                      .+.-|.+++..|++.+..+++..++.++..+|..++|+++|| +.|+.+.....+.++..+...+ .++.+..++.-++.
T Consensus       232 tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~w  310 (394)
T COG2814         232 TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLW  310 (394)
T ss_pred             HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            344555899999999999999999999999999999999999 9999888887777777666555 45556666667778


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      |+............+++ .-++.+..+.+++...+++|..+|..+++..    |+....++.+++.+++++..+.
T Consensus       311 g~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         311 GFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence            88877766666677777 4456688889988888888888877777665    8888889888888887776654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.29  E-value=2.1e-10  Score=104.23  Aligned_cols=118  Identities=18%  Similarity=0.344  Sum_probs=97.0

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhhhhhhcc
Q 020792           68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-KAAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        68 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      .++ +..+.+++.++..++.+++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+.+..++.|++.+..++
T Consensus       252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  330 (437)
T TIGR00792       252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG  330 (437)
T ss_pred             ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence            345 55667788888899999999999999999999999999988888877766654 4566677778888999998888


Q ss_pred             hhhhhhhccCC-------CccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          147 VVPVYIAEITP-------KNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       147 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ...++++|..+       ++.+|...++.+....+|..+++.+.+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999998865       44569999999999999988888777654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.27  E-value=3e-11  Score=102.39  Aligned_cols=132  Identities=20%  Similarity=0.204  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCcc
Q 020792           81 SILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL  160 (321)
Q Consensus        81 ~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  160 (321)
                      -+..+...-|.++.+++.||+|||+.+..+.++.+++.++...+.+-....+..+..-++..+.+.+.++|..|.+|++.
T Consensus       388 litslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  388 LITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             HHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence            34556677889999999999999999999999999998877765443333333333333444557778899999999999


Q ss_pred             chhHHhHHHHHHHHHHHHHHHhhcch--hhHHHHHHhHHHHHHHHHHhhcccCC
Q 020792          161 RGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPES  212 (321)
Q Consensus       161 r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e~  212 (321)
                      |++..|.......+|+++.|+++-..  +-..+..+.+.+.+++.+...++|-+
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence            99999999999999999999998333  33456666777778888888888744

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.27  E-value=7.1e-12  Score=102.52  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh-hccchHHHHHHHHHH
Q 020792           36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-YIGRRGTMGFSDIVC  114 (321)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~  114 (321)
                      ++...+..+++..+..++..-..+....++..+.+++.++..++.+++..-..+..+++|++.| |+|.|..-++-++..
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            3444555555555555555555555566677788888888889999999999999999999999 568888777777777


Q ss_pred             HHHHHHHHH---hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh
Q 020792          115 IIGWVIIVF---SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       115 ~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      .++.++++.   .+.+|++.++|++.|+|.-..-.+.+.+..-||..|+.+.++|+......+|+.+--.+.
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm  192 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLM  192 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeec
Confidence            777776664   689999999999999998777777889999999999999999999999999876543333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.26  E-value=1.9e-10  Score=105.80  Aligned_cols=146  Identities=17%  Similarity=0.291  Sum_probs=123.0

Q ss_pred             chhcc-ccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 020792           61 AQSGI-TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        61 ~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  139 (321)
                      .+|.+ ++.+|.+....|++.+...+|.++|+++.+++.+|+++++.+..+.++.+++.+..+++++.+...+..++.|+
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~  319 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGA  319 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            45544 45789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      +.....+...+.+.+..|++.||+.++++.+....+..+|.++.+.+    |.+..+.+.++..++..++.
T Consensus       320 ~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  320 AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            99888888899999999999999999999877666666655555544    77777777666555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.24  E-value=3.5e-10  Score=102.69  Aligned_cols=127  Identities=18%  Similarity=0.146  Sum_probs=89.3

Q ss_pred             cchhc-cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHH-HH-H--hhhhHHHHHHH
Q 020792           60 PAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI-IV-F--SKAAWWLDLGR  134 (321)
Q Consensus        60 ~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~  134 (321)
                      ...|. +++.+|++..+.++......++..++.+++|+++||+|||++++.+.++.++...+ .. .  .++.....+..
T Consensus       259 ~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
T PRK15075        259 VYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVE  338 (434)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            33443 45568999999999999999999999999999999999999888765544332221 11 1  22333344445


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHH-HHHHHHHHHHHhhcch
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQL-MICIGVSMTYLIGAFL  186 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~  186 (321)
                      ++.+++.+...+....++.|.+|+++|++..++.+. +..++..++|.+.+++
T Consensus       339 ~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        339 LWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            556666666666677889999999999999988544 4444456677766554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.24  E-value=1.3e-10  Score=105.68  Aligned_cols=149  Identities=11%  Similarity=0.101  Sum_probs=95.6

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHH---HHHHHHHHh--hhhHHHHHHHHHHh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI---IGWVIIVFS--KAAWWLDLGRLLVG  138 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~l~G  138 (321)
                      ++++..|.+..+.++...+..++..++.++.|+++||+|+++....+.....   ++.......  .+.+...+..++.|
T Consensus       277 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  356 (438)
T TIGR00712       277 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIG  356 (438)
T ss_pred             HHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            4556689999999999999999999999999999999965432222322211   122222221  23333333444455


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHH-HHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIG-VSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      ++.............|.+|+++|+++.++.+....+| ..++|.+.+.+    ||...+++.++..+++.+.. +..||+
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       357 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4432222222346789999999999999998776665 45677666554    78888887776666655554 445665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.23  E-value=2.2e-10  Score=116.22  Aligned_cols=136  Identities=13%  Similarity=0.173  Sum_probs=115.2

Q ss_pred             ccccccCCChh-hHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 020792           64 GITNDLGLSVA-EYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG  142 (321)
Q Consensus        64 ~~~~~~~~s~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  142 (321)
                      ++.+.+|.+.. +.+++.+...++.+++.++.|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.+
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  337 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG  337 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            46677899998 99999999999999999999999999999999999888888888888888888888888899999999


Q ss_pred             hhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHH
Q 020792          143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPC  199 (321)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~  199 (321)
                      ...+...+++.+..|++.||+++++.+....+|..+++.++..+     ++...+++.+.+.
T Consensus       338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            88888999999999999999999999998888887776666544     3444455444443

>PRK10054 putative transporter; Provisional

Probab=99.22  E-value=1.6e-10  Score=103.52  Aligned_cols=139  Identities=12%  Similarity=0.148  Sum_probs=107.8

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhhhhhhc
Q 020792           67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-KAAWWLDLGRLLVGYGMGLLS  145 (321)
Q Consensus        67 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~  145 (321)
                      ++.+.+....+++.....+.....+++.|++.||+++|+.+..++++.+++.....+. ++.+.+.++.++.|++.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            4556677778888888888888888999999999999999999988888877766654 567777778889999988878


Q ss_pred             chhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh
Q 020792          146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      +.....+.+..|++.|+++.+..+ ...+|..++|.+++.+    +.+..|++.+....+..++.
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            888889999999999998887655 4447778888777666    56666666555544444443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=1.5e-10  Score=100.24  Aligned_cols=148  Identities=24%  Similarity=0.273  Sum_probs=129.6

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      -.+++|++..+...+.....+..++|++++|+|.||+|.|+++..+.++..+.++..-+......+.++..+.|...|+.
T Consensus       279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~  358 (438)
T COG2270         279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA  358 (438)
T ss_pred             HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence            45689999999999999999999999999999999999999999999999888887777777777888889999999999


Q ss_pred             cchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhhcccCC
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFIPES  212 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~~~e~  212 (321)
                      +...-++.+++.|+++-++..|+++.....++.++|++-+.+     +-|..+....++..+.++..+++|++
T Consensus       359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            999999999999999889999999999999999999888776     45666666666666666666666654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.21  E-value=1.2e-09  Score=97.80  Aligned_cols=141  Identities=12%  Similarity=-0.008  Sum_probs=103.8

Q ss_pred             cccccCCChhhHHHHHHHHHH-HHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHH
Q 020792           65 ITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF------SKAAWWLDLGRLLV  137 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~  137 (321)
                      +.+|.|++.++.+++.....+ ...++.++.|++.||+|+|+.+..+.++.++.......      .++...+.....+.
T Consensus       234 ~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (390)
T TIGR02718       234 YLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFG  313 (390)
T ss_pred             HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHH
Confidence            345589999999999888764 66777899999999999999988877665333322221      12223334444555


Q ss_pred             hhhhhhhcchhhhhhhccCCC-ccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHH
Q 020792          138 GYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG  205 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~  205 (321)
                      +++.+..++.....+.+..++ +++++..+..+....+|..++|.+++.+    |++..|+..+++.+++.+.
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       314 SLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            667777777788887777776 7789999999999999999999888766    7888888777766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11462 putative transporter; Provisional

Probab=99.21  E-value=1.8e-09  Score=98.63  Aligned_cols=143  Identities=11%  Similarity=0.024  Sum_probs=105.9

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh----ccchHH-HHHHHHHHHHHHHHHHHhhh------hHHHHH
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRRGT-MGFSDIVCIIGWVIIVFSKA------AWWLDL  132 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~~~~  132 (321)
                      ++.+..|+++..+|.+..+.-+.-++..|+.|.++||    +|||+. ++++.+..+++.+++...++      ...+.+
T Consensus        35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~  114 (460)
T PRK11462         35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI  114 (460)
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            4667789999999999999999999999999999995    787754 55666777777666554332      344555


Q ss_pred             HHHHHhhhhhhhcchhhhhhhccCC-CccchhHHhHHHHHHHHHHHHHHHhhc----ch-------hhHHHHHHhHHHHH
Q 020792          133 GRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGA----FL-------NWRILALIGTIPCL  200 (321)
Q Consensus       133 ~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~----~~-------~w~~~~~~~~~~~~  200 (321)
                      ..++..++.........++..|+.+ +++|++..++...+..+|..+++.+..    ..       +|+....+.+++.+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            6666778888888888899999987 788999999999888887666554431    11       46666666666655


Q ss_pred             HHHHHh
Q 020792          201 VQLIGL  206 (321)
Q Consensus       201 ~~~~~~  206 (321)
                      +..++.
T Consensus       195 i~~~i~  200 (460)
T PRK11462        195 MMLAFC  200 (460)
T ss_pred             HHHHHH
Confidence            554443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.19  E-value=1.8e-10  Score=105.42  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=137.8

Q ss_pred             ccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 020792           57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGR  134 (321)
Q Consensus        57 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (321)
                      .....+|...++++++..+.+.+.++..+...++.++.|+++|+..  ++.+..++.+..+++.+.+.+.++++.+...-
T Consensus       316 ~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~  395 (509)
T KOG2504|consen  316 VPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS  395 (509)
T ss_pred             HHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3345677788899999999999999999999999999999999998  55677888888888888999999999999999


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      .+.|+..|........++.|+.+.++-..+.|+.....+++..++|++.+.+     +|...|+..++..+++.+.++..
T Consensus       396 ~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  396 ILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            9999999998888888999999999889999999999999999999999877     58889999999888888777666


Q ss_pred             c
Q 020792          210 P  210 (321)
Q Consensus       210 ~  210 (321)
                      +
T Consensus       476 ~  476 (509)
T KOG2504|consen  476 R  476 (509)
T ss_pred             H
Confidence            5

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.19  E-value=9.8e-11  Score=101.32  Aligned_cols=143  Identities=18%  Similarity=0.286  Sum_probs=115.1

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc--cchHHH-HHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTM-GFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVG  138 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G  138 (321)
                      ++.|..|+|..++++..+.+-++.+.|.++.||++||+  |||.+. ++.+++..++......++  |+++..++.++.|
T Consensus       278 YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iG  357 (448)
T COG2271         278 YLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIG  357 (448)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence            57888999999999999999999999999999999987  677654 444555555555556655  4588888889999


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH-HHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      +..-+..-.......|..|++--|++.|+......+ |...+....+++    ||...|.+..+.++++.++.
T Consensus       358 f~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         358 FLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            887777777778889999999889999999998888 777777666655    89999888777766665544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.18  E-value=7.9e-11  Score=104.43  Aligned_cols=128  Identities=16%  Similarity=0.234  Sum_probs=92.2

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccc-hHH-HHHHH-HHHHHHHHHHHH--hhhhHHHHHHHHHHh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-RGT-MGFSD-IVCIIGWVIIVF--SKAAWWLDLGRLLVG  138 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~-l~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~G  138 (321)
                      ++.+++|.+..+.++..+...++..++.++.|+++||.++ |+. +.... ....++......  ..+.+...+..++.|
T Consensus       242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  321 (379)
T TIGR00881       242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALG  321 (379)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence            4567789999999999999999999999999999998643 332 22222 122222222222  234455556667777


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHH
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRIL  191 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~  191 (321)
                      +......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+    ||++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       322 FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            665555666678899999999999999999999999998888887665    56543

>PRK09848 glucuronide transporter; Provisional

Probab=99.18  E-value=1e-09  Score=100.02  Aligned_cols=123  Identities=14%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc----cchHHH-HHHHHHHHHHHHHH-HHh----h--hhHHH
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI----GRRGTM-GFSDIVCIIGWVII-VFS----K--AAWWL  130 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~~~----~--~~~~~  130 (321)
                      .++.+.+|++..++|.+.++..+..++..+++|+++||.    |||+.. +++.+...+...+. ...    .  ..+..
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            357788899999999999999999999999999999996    777654 55555444444432 221    1  12334


Q ss_pred             HHHHHHHhhhhhhhcchhhhhhhccCC-CccchhHHhHHHHH-----HHHHHHHHHHhhcc
Q 020792          131 DLGRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLM-----ICIGVSMTYLIGAF  185 (321)
Q Consensus       131 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~i~~~  185 (321)
                      ++..++.+++.+...+...++..++.+ +++|.+..+....+     ..++..++|.+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445567788887777777777777664 46787776665543     23445556655543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.18  E-value=1.8e-10  Score=101.50  Aligned_cols=143  Identities=20%  Similarity=0.275  Sum_probs=82.1

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHH--HHHHHHH-HH----hhhhH-HHHHHHHH
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC--IIGWVII-VF----SKAAW-WLDLGRLL  136 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~~~~~~~-~~----~~~~~-~~~~~~~l  136 (321)
                      +.+..|+|.++.|.+.++..+...+.+|+.|.++||+|.|+-++......  ..+.+.. .+    ..|.+ ..+++.+.
T Consensus        34 L~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~  113 (412)
T PF01306_consen   34 LTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIY  113 (412)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTT
T ss_pred             HccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568999999999999999999999999999999999666554433222  2233222 12    23332 22333344


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      .|++..+..++.-+++.++...  .+.-.|-.-+..++|.+++..+++.+   +-+..||+....+++..++.++.
T Consensus       114 l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  114 LGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             TTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHc
Confidence            4555555555555555444321  13444555555566666666666555   45567777666555555444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.18  E-value=4.6e-10  Score=100.53  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=94.2

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      +.+++|.+..+.+.+.+...++..++.++.+++.||+|||+++.++.++..++..+..+.++.+...+...+.+.+.+..
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  309 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG  309 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678999999999999999999999999999999999999999999888888877777665554444444444444333


Q ss_pred             cchhhhhhhccCCCccc-hhHHhHHHHHHHHHHHHHHHhhcchhhHHHHHHhHH
Q 020792          145 SYVVPVYIAEITPKNLR-GGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTI  197 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~~~w~~~~~~~~~  197 (321)
                      ++.  ....+..|.++| +.+.+....+..+|..+++.+.+.+++.......+.
T Consensus       310 ~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        310 FGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             hHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            332  333445565555 666777777777777787777777776554444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.17  E-value=1.5e-09  Score=97.67  Aligned_cols=137  Identities=14%  Similarity=0.177  Sum_probs=104.8

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----KAAWWLDLGRLLVGY  139 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~  139 (321)
                      +.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++.+++..+..+.     .+.+.+.+..++.|+
T Consensus       242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            456789999999988888888999999999999999999999998888777776666543     345566777888899


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHH
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ  202 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~  202 (321)
                      +.+...+......... ++++||+..+..+....+|..+++.+.+.+    ++....+..++..++.
T Consensus       322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            8887776665554433 447899999999999999999998888776    4444444444444443

>PRK09848 glucuronide transporter; Provisional

Probab=99.17  E-value=2.8e-09  Score=97.28  Aligned_cols=121  Identities=14%  Similarity=0.114  Sum_probs=95.8

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMG  142 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~  142 (321)
                      +++.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+  +.+.+.+..++.|+|.+
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~  334 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG  334 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            4556777666555555555777888999999999999999999999988888777666643  56666777788899999


Q ss_pred             hhcchhhhhhhccCCCc-------cchhHHhHHHHHHHHHHHHHHHhhcc
Q 020792          143 LLSYVVPVYIAEITPKN-------LRGGFTTVHQLMICIGVSMTYLIGAF  185 (321)
Q Consensus       143 ~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~  185 (321)
                      ...+...++.+|..|.+       ++|...++.+....+|..+++.+.+.
T Consensus       335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888653       24888899999888888888776654

>TIGR01272 gluP glucose/galactose transporter

Probab=99.16  E-value=1.6e-09  Score=93.72  Aligned_cols=124  Identities=12%  Similarity=0.124  Sum_probs=97.3

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcch
Q 020792           68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYV  147 (321)
Q Consensus        68 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  147 (321)
                      .+|+++++.+...+.+..+..++.++.+++.||+|+|+++.++.++.+++.++....++... ..+-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999999999999998888887777766655444332 34556889999999999


Q ss_pred             hhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHH
Q 020792          148 VPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI  194 (321)
Q Consensus       148 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~  194 (321)
                      ..+...+.+|++ .+.+.++. ....+|..+.|.+.+.+    +.+..+++
T Consensus       251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            999999988865 45555665 45567888888766655    56666654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.15  E-value=9.6e-10  Score=98.84  Aligned_cols=147  Identities=13%  Similarity=0.162  Sum_probs=101.8

Q ss_pred             hccccccCCChhhHHHHHHHHH-HHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HHh-hhhHHHHHHH---
Q 020792           63 SGITNDLGLSVAEYSLFGSILT-IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFS-KAAWWLDLGR---  134 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~---  134 (321)
                      +.+.+++|+++++.+++.+... ++..++.++.|++.||+|+|+.+.++.++.++..+..   +.. ++.+.+.+.-   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            3466778999999999886654 5688999999999999999998877776665554333   343 3445554444   


Q ss_pred             -HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcchhhHHHHHHhHHHHHHHHHHhhcc
Q 020792          135 -LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       135 -~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                       +..|++.+..++....++.+.+|.++++...+....+..+++.++..+...+||+..|.+.++++++.++..+..
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence             345666777788888888888887766554444434443344445555555699999999888877776655443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.15  E-value=6.9e-10  Score=101.73  Aligned_cols=148  Identities=18%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             chh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHH--------HHHHHHHH--HHHHHHHHH-hhhhH
Q 020792           61 AQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGT--------MGFSDIVC--IIGWVIIVF-SKAAW  128 (321)
Q Consensus        61 ~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~--------l~~~~~~~--~~~~~~~~~-~~~~~  128 (321)
                      .+| ++.+.+|.+..+.++..++..++..++.++.|+++||+++|+.        +..+....  ++..+.... ..+.+
T Consensus       283 ~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (465)
T TIGR00894       283 YLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY  362 (465)
T ss_pred             HHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence            344 4567789999999999999999999999999999999875531        11111111  111111222 22333


Q ss_pred             HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-------hhHHHHHHhHHHHHH
Q 020792          129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-------NWRILALIGTIPCLV  201 (321)
Q Consensus       129 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-------~w~~~~~~~~~~~~~  201 (321)
                      ..++.-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|+.++|.+.+.+       +|+..|.+.++..++
T Consensus       363 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i  441 (465)
T TIGR00894       363 LTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNIL  441 (465)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHH
Confidence            344444455555554455455555666665 789999999999999999999888764       388888888877777


Q ss_pred             HHHHhhcc
Q 020792          202 QLIGLCFI  209 (321)
Q Consensus       202 ~~~~~~~~  209 (321)
                      ..+...++
T Consensus       442 ~~i~~~~~  449 (465)
T TIGR00894       442 CVIFYLIF  449 (465)
T ss_pred             HHHHeeee
Confidence            76665544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.15  E-value=1e-09  Score=97.83  Aligned_cols=118  Identities=17%  Similarity=0.313  Sum_probs=93.8

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----KAAWWLDLGRLLVGY  139 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~  139 (321)
                      +.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+.++..++..+....     ++...+.+..++.|+
T Consensus       233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  312 (385)
T TIGR00710       233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI  312 (385)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            556789999999999999999999999999999999999999988887777776655543     233445556777889


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHH-HHHHHHHHhh
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC-IGVSMTYLIG  183 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~i~  183 (321)
                      +.+...+.......|..| ++|+++.++.+.... .|.+.++.++
T Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888899887 568999998876654 4566666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.15  E-value=4.3e-10  Score=103.54  Aligned_cols=123  Identities=15%  Similarity=0.224  Sum_probs=105.6

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF----SKAAWWLDLGRLLVGY  139 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~  139 (321)
                      ++++.+|.++.+.++......++..++.++.|++.||+|||+++.++.++.+++..+..+    ..+.+.+....++.|+
T Consensus       281 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  360 (485)
T TIGR00711       281 YLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF  360 (485)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence            355668999999999999999999999999999999999999999998888888777663    2345666677888999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +.+..++.......+..|+++|+.+.++.+....+|..+++.+.+.+
T Consensus       361 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       361 GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888877777788889999999999999999999999998877665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.14  E-value=1.8e-09  Score=96.34  Aligned_cols=143  Identities=13%  Similarity=0.241  Sum_probs=101.4

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhh
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-SKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~  140 (321)
                      .|++.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  302 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG  302 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34566778999999999999999999999999999999999999999888887777655543 45555556666666666


Q ss_pred             hhhhcchhhh-hhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHh
Q 020792          141 MGLLSYVVPV-YIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       141 ~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      .....+.... ...+..+++.++..  ..+....+|..++|.+++.+     +|+..+.+.+++.++.....
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            5444443333 34444455544544  23556677888888777664     68888888776655554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.14  E-value=4.7e-10  Score=101.13  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=93.4

Q ss_pred             cchhccccc--cCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           60 PAQSGITND--LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGT-MGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        60 ~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      ..+|.+.++  .|.+..+.+.......++..++.++.|+++||++||+. +....+..+++..+....++.....++-.+
T Consensus       263 ~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (412)
T TIGR02332       263 IWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIM  342 (412)
T ss_pred             HHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            345545554  36778888999999999999999999999999997774 344444444433222222222222222222


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHH
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIP  198 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~  198 (321)
                      .+++.....+.......|.+|+++|+++.++.+....+|..++|.+.+.+     +|++.+++.++.
T Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       343 ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            33333333344445567889999999999999999999999999877665     588887766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.13  E-value=1.8e-09  Score=96.33  Aligned_cols=148  Identities=19%  Similarity=0.325  Sum_probs=116.3

Q ss_pred             cccccC-CChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-hhhHHHHHH----HHHHh
Q 020792           65 ITNDLG-LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-KAAWWLDLG----RLLVG  138 (321)
Q Consensus        65 ~~~~~~-~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~l~G  138 (321)
                      ..++.| .+....+.+.++..++-++.-...+++..|+|.|++++++.+..++=..+.+.. ++.+...+.    ..+.|
T Consensus       233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG  312 (400)
T PF03825_consen  233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHG  312 (400)
T ss_pred             HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhh
Confidence            345555 777888888888889999999999999999999999999999999988888877 555443333    45699


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHH-HHHHHHHHHHhhcch----------hhHHHHHHhHHHHHHHHHHh-
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLM-ICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLIGL-  206 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~----------~w~~~~~~~~~~~~~~~~~~-  206 (321)
                      +..+..+.....++.+..|++.|+++.++++.. .++|..++..+++++          .|...+.+.+.+.++..++. 
T Consensus       313 ~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~  392 (400)
T PF03825_consen  313 LTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV  392 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764 678888888888876          24455666666655555544 


Q ss_pred             hcccCC
Q 020792          207 CFIPES  212 (321)
Q Consensus       207 ~~~~e~  212 (321)
                      ++++|+
T Consensus       393 ~~fk~~  398 (400)
T PF03825_consen  393 ILFKPK  398 (400)
T ss_pred             hhccCC
Confidence            344543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.13  E-value=4e-09  Score=92.56  Aligned_cols=155  Identities=15%  Similarity=0.230  Sum_probs=125.3

Q ss_pred             ccchhccccc-cCCChhhHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           59 SPAQSGITND-LGLSVAEYS-LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        59 ~~~~~~~~~~-~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      ....|++.+. .|++..|+. -+.-+..-.+.+..++...+.|..|.|++++++.+...+...+..+.++...+-+..+.
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~  103 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF  103 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence            3345566665 899988875 45666777788888999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch------hhHHHHHHhHHHHHHHHHHhhccc
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIP  210 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~~~  210 (321)
                      -|++.+. ..+..+++-...|+++--++.+....+..+|..++..++..+      +++...++......++++..+++|
T Consensus       104 yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  104 YGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999765 777888888888887778888888888888877777777655      566666666666667777778888


Q ss_pred             CChH
Q 020792          211 ESPR  214 (321)
Q Consensus       211 e~~~  214 (321)
                      ..++
T Consensus       183 ~~~~  186 (412)
T PF01770_consen  183 MPKR  186 (412)
T ss_pred             CCCc
Confidence            7654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=99.13  E-value=7e-10  Score=97.97  Aligned_cols=111  Identities=17%  Similarity=0.178  Sum_probs=91.3

Q ss_pred             hccccccCCChhhHHHHHHHHH-HHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-----------hhhHHH
Q 020792           63 SGITNDLGLSVAEYSLFGSILT-IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----------KAAWWL  130 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~  130 (321)
                      |.+.+++|.+.++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.           ++.+.+
T Consensus       233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (356)
T TIGR00901       233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML  312 (356)
T ss_pred             HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence            3343458999999998887665 6788999999999999999999888888877766654442           345667


Q ss_pred             HHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHH
Q 020792          131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC  173 (321)
Q Consensus       131 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  173 (321)
                      ..+.++.+++.+..++...+++.|.+|+++||+..++.+...+
T Consensus       313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            7788889999999999999999999999999999999887654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.13  E-value=3.7e-09  Score=94.78  Aligned_cols=140  Identities=12%  Similarity=0.125  Sum_probs=103.0

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM  141 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  141 (321)
                      .|.+.+++|++..+.+.......++..++.++.+++.||.+++..+....+..+....+....++.+.+.+..++.|++.
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~  319 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF  319 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            35566788999999999999999999999999999999965444344333333333444455667777778889999999


Q ss_pred             hhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHH
Q 020792          142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ  202 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~  202 (321)
                      +...+...+++.+..|+ ++++..+.......+|..+++.+++.+    |++..++..+.+.++.
T Consensus       320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        320 ALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            88888888888888874 456666666667777777777777666    7777777766554433

>TIGR00896 CynX cyanate transporter

Probab=99.12  E-value=2.5e-09  Score=94.48  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  139 (321)
                      .+|.+.++.|.+..+.+.+.++..++.+++.++.|++.||+ +||+.+.++.++.+++.++..+..+..... .-++.|+
T Consensus       219 ~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~  297 (355)
T TIGR00896       219 WLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGL  297 (355)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHH
Confidence            34545566899999999999999999999999999999999 567777777777777776666654433222 3467899


Q ss_pred             hhhhhcchhhhhhhccCC-CccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +.+..++.....+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus       298 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l  345 (355)
T TIGR00896       298 GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL  345 (355)
T ss_pred             hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888887777766555 45568888888888888888888877765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.12  E-value=1.8e-09  Score=95.68  Aligned_cols=147  Identities=13%  Similarity=0.041  Sum_probs=98.2

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccc---hHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR---RGTMGF-SDIVCIIGWVIIVFSKAAWWLDLGRLL  136 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  136 (321)
                      .+|.+.++.|++.. .+...++..+...++   .++++||..|   |+.... ..++.++...+.++..+.+...+.-.+
T Consensus       214 wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  289 (368)
T TIGR00903       214 WLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGI  289 (368)
T ss_pred             HHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            45545566777754 555555555555555   4677777754   333332 344444444444555444444555566


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch--hhHHHHHHhHHHHHHHHHHhhcccC
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPE  211 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e  211 (321)
                      .+++....++..+++.+|.+|++.|+++.|+.+....+|+..+|.+.+.+  +-+..|.+.+++.++..+..+.+++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       290 AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77777777787889999999999999999999999999998888777544  6667777777777766665544454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.12  E-value=3.6e-09  Score=97.19  Aligned_cols=122  Identities=11%  Similarity=0.154  Sum_probs=91.3

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWLDLGRLLVGY  139 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~  139 (321)
                      +.+...-+.+..+++.+...++.+++.+++++++||+|+|+.+.++.++.+++.+...+     .++.+.+++.-++.|+
T Consensus       257 ~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~  336 (473)
T PRK10429        257 YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNI  336 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            43333335566777778778899999999999999999999999888776666554432     3455667777788899


Q ss_pred             hhhhhcchhhhhhhccCC-----Cccc--hhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITP-----KNLR--GGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~-----~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +.+..++...++++|..+     ..+|  |...+......-+|..+++.+.+.+
T Consensus       337 ~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        337 GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999989888999999855     3333  6678888888888887777666543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.12  E-value=9.1e-10  Score=111.68  Aligned_cols=135  Identities=12%  Similarity=0.130  Sum_probs=108.5

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-------------------
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-------------------  124 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------------  124 (321)
                      ++.+.+|.+..+.|++.+++.++.++++++.|+++||.++++.+..+.++.+++.+...+.                   
T Consensus       251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  330 (1140)
T PRK06814        251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS  330 (1140)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence            3566689999999999999999999999999999998887776666665555555434332                   


Q ss_pred             -hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHH
Q 020792          125 -KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIP  198 (321)
Q Consensus       125 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~  198 (321)
                       .+.+.+.+..++.|++.+...+...+++.+..|++.||++++..+....+|..+++++.+.+     ++...+++.+.+
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence             66777888888999999998989999999999999999999999999998888888777655     445555544443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.10  E-value=1.1e-09  Score=96.43  Aligned_cols=146  Identities=18%  Similarity=0.197  Sum_probs=118.8

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 020792           67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        67 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      ++-+.+....|.+.++..+..++...+.+++.+|+|.|+.++++.+++++=...++++++.+.+.+.+.+.|+..+....
T Consensus       252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv  331 (412)
T PF01306_consen  252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV  331 (412)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            34445666789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCccchhHHhHH-HHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          147 VVPVYIAEITPKNLRGGFTTVH-QLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       147 ~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      ...-|+.+.+|+|..++...+. +.+..+|..+.+.+++.+    |.+..|++.+.+.++..++. +.++++
T Consensus       332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9999999999998777776664 667778887777777665    78888988888777666555 445544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.10  E-value=2.4e-10  Score=100.42  Aligned_cols=121  Identities=23%  Similarity=0.411  Sum_probs=103.1

Q ss_pred             cchhc-cccccCCC-hhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHH
Q 020792           60 PAQSG-ITNDLGLS-VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS---KAAWWLDLGR  134 (321)
Q Consensus        60 ~~~~~-~~~~~~~s-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~  134 (321)
                      ...|. +.+++|.+ ..+.+...++..++..++.++.|+++||+|+|+...+......++.....+.   ++.....+..
T Consensus       227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (352)
T PF07690_consen  227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIAL  306 (352)
T ss_dssp             HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHH
T ss_pred             cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444 58889999 7899999999999999999999999999999888777777766666555443   3456677788


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHH
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY  180 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  180 (321)
                      ++.|++.+...+....++.|..|+++||++.++.+....+|..++|
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            8899999999999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.3e-09  Score=89.50  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=96.6

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII-GWVIIVFSKAAWWLDLGRLLVGYGMG  142 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~~~  142 (321)
                      .+++++|+|+..++.+.+......++.+++.|.++||+|++...+.+..+..+ +.....++  .+.-..+..+.|+...
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence            47889999999999999999999999999999999999999877666544433 33333332  2223345567788776


Q ss_pred             hhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ..-...+..++...|.++.|++.+..+...++|-.+.|++.+.+
T Consensus       368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            66666778888888989899999999999999999999999887

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.09  E-value=1.7e-09  Score=99.90  Aligned_cols=123  Identities=13%  Similarity=0.135  Sum_probs=106.8

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS---KAAWWLDLGRLLVGYG  140 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~  140 (321)
                      ++++.+|.++.+.|.......++..++.++.|++.||+|+|+++..+.++.+++..+....   ++.+...+..++.|++
T Consensus       285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g  364 (495)
T PRK14995        285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS  364 (495)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            4677789999999999999999999999999999999999999998888887776655432   3555566778899999


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      .|...+.....+.+..|+++++.+.++.+....+|..+++.+.+.+
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888889999999999999999999999999998887765

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.08  E-value=1e-09  Score=97.71  Aligned_cols=148  Identities=20%  Similarity=0.198  Sum_probs=115.1

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh----hccchH-HHHHHHHHHHHHHHHHHHhhh------hHHHHHH
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRG-TMGFSDIVCIIGWVIIVFSKA------AWWLDLG  133 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~  133 (321)
                      +.+.+|+++..+|.+..+.-+.-++.-|+.|.++|    |+||+| .++++.+..++.+.++..+++      .....+.
T Consensus        39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt  118 (467)
T COG2211          39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT  118 (467)
T ss_pred             HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence            66779999999999999999999999999999999    578665 566777888888777776653      4556677


Q ss_pred             HHHHhhhhhhhcchhhhhhhccCC-CccchhHHhHHHHHHHHHHHHHHHhh----cch-------hhHHHHHHhHHHHHH
Q 020792          134 RLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIG----AFL-------NWRILALIGTIPCLV  201 (321)
Q Consensus       134 ~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~----~~~-------~w~~~~~~~~~~~~~  201 (321)
                      ..+.+++.........++.+|+.+ +++|.+..+.-..+..+|..+...+.    ..+       ||+....+.+++.++
T Consensus       119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence            888999999988889999999875 78899999998888888855443332    222       688777777777776


Q ss_pred             HHHHhhc-ccCC
Q 020792          202 QLIGLCF-IPES  212 (321)
Q Consensus       202 ~~~~~~~-~~e~  212 (321)
                      .++.+++ .+|+
T Consensus       199 ~~l~~~~~v~ER  210 (467)
T COG2211         199 LLLFCFFNVKER  210 (467)
T ss_pred             HHHHHHHHhhcc
Confidence            6666544 4555

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.08  E-value=4.4e-09  Score=94.23  Aligned_cols=133  Identities=11%  Similarity=0.094  Sum_probs=103.7

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      ++++.+|.++.+.|++.+...++..++++..+++.||.++|+++..+.. .++...+..+.++.+...+..++.|++.+.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence            4566789999999999999999999999999999999999988887753 344444556667777677777888998888


Q ss_pred             hcchhhhhhhccCCCcc-chhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHH
Q 020792          144 LSYVVPVYIAEITPKNL-RGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTI  197 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~  197 (321)
                      ..+...+.+.+..|++. +|++.++.+....+|..++..+...+   +-+..+.+.+.
T Consensus       310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (393)
T PRK11195        310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGF  367 (393)
T ss_pred             hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            78878888888766654 69999999999999988887776654   44444444333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.08  E-value=3.4e-09  Score=95.20  Aligned_cols=126  Identities=13%  Similarity=0.056  Sum_probs=100.3

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh-hccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-YIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  139 (321)
                      .+|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.++.++.+.+.+..++.++
T Consensus       230 ~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  309 (400)
T PRK11646        230 MLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI  309 (400)
T ss_pred             hhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            345444554447788888888877777666655666665 5776777778888888887777788888777777788888


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +.+...+...+++.|..|+++||+..++.+....+|..++|.+++.+
T Consensus       310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence            88888888899999999999999999999999999999999888876

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.07  E-value=1.4e-09  Score=94.24  Aligned_cols=145  Identities=17%  Similarity=0.050  Sum_probs=111.9

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHH
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-------KAAWWLDLGRLL  136 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l  136 (321)
                      ++.++|+.++.+.+.+.....+...+..+.+|+|+||+|.+|++.+....++++..+.+..       .+....++..+.
T Consensus       244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  323 (417)
T COG2223         244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA  323 (417)
T ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence            5788899999999999999999999999999999999999999999999998888877765       334444444444


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      +++..|........++...+|+ +-|.+.|+.....++|..+-|..-+..     +++..|++.....+++.+..+..
T Consensus       324 l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         324 LFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455566666677765 468899999999999987776655444     58888888888877777765443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=2.3e-08  Score=88.97  Aligned_cols=120  Identities=14%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH---H-hhhhHHHHHHHHHHhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---F-SKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~G~~  140 (321)
                      +.+.+|.++.+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+...   . ..+.+...++-.+.+.+
T Consensus       221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T PRK11102        221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC  300 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            5566899999999999999999999999999999999999999888766444332221   1 22344444444444444


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhHHHHH-HHHHHHHHHHhhcc
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLM-ICIGVSMTYLIGAF  185 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~  185 (321)
                      .+........++.|..| ++|+.+.+..+.. ..+|..+++.++..
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555555667778776 6788888887654 45777777776543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.03  E-value=9.9e-09  Score=93.07  Aligned_cols=119  Identities=19%  Similarity=0.386  Sum_probs=100.7

Q ss_pred             cccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhhhhh
Q 020792           67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        67 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~  144 (321)
                      ..+|.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+  +.+.+++..++.|++.+..
T Consensus       254 ~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~  332 (428)
T PF13347_consen  254 YVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAF  332 (428)
T ss_pred             HHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccc
Confidence            335544 6678888899999999999999999999999999999999999998888775  8899999999999999999


Q ss_pred             cchhhhhhhccCCCc------c-chhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          145 SYVVPVYIAEITPKN------L-RGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~------~-r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ++...++++|..+..      + .|...+..+....+|..+++.+.+.+
T Consensus       333 ~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  333 FVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             ccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            999999999998732      2 28888888888888888777766543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.00  E-value=1.2e-07  Score=86.50  Aligned_cols=139  Identities=22%  Similarity=0.281  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHH-HHHHHHHHHHHHHh--hhhHHHHHHHHHHhhhhhhhcchhhhh
Q 020792           75 EYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFS-DIVCIIGWVIIVFS--KAAWWLDLGRLLVGYGMGLLSYVVPVY  151 (321)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~  151 (321)
                      ..++..++..+..++..|+.|-++|+-|+||.++.. .++..+++.++.+.  ++++...+..++..++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999977755544 44455556665553  344555555666667888888899999


Q ss_pred             hhccCCCccc--------------------------hhHHhHHHHHHHHHHHHHHHhhcch------------hhHHHHH
Q 020792          152 IAEITPKNLR--------------------------GGFTTVHQLMICIGVSMTYLIGAFL------------NWRILAL  193 (321)
Q Consensus       152 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~~------------~w~~~~~  193 (321)
                      +.|..+++.+                          ++..+.-.....+|+++.-.+.-.+            +-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999888                          8888887777777777655544322            2477777


Q ss_pred             HhHHHHHHHHH-HhhcccCCh
Q 020792          194 IGTIPCLVQLI-GLCFIPESP  213 (321)
Q Consensus       194 ~~~~~~~~~~~-~~~~~~e~~  213 (321)
                      +.++.-++..+ ..+++||.|
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~  251 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRP  251 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC
Confidence            77766554444 445677775

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10133 L-fucose transporter; Provisional

Probab=99.00  E-value=9.3e-09  Score=93.39  Aligned_cols=130  Identities=10%  Similarity=0.016  Sum_probs=98.7

Q ss_pred             ccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhc
Q 020792           66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS  145 (321)
Q Consensus        66 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  145 (321)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|||+++..+.++.+++..+..+.++.+ ......+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999888877777666655555432 3456678899999999


Q ss_pred             chhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h-hHHHHHHhHHH
Q 020792          146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIP  198 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~  198 (321)
                      |...+...|.+|++ .+.+.++..... +|..++|.+.+.+    | -+..|++..+.
T Consensus       366 P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        366 PTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            99999999998764 466666665433 4555565555554    4 45556544433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.99  E-value=7.1e-08  Score=86.16  Aligned_cols=121  Identities=16%  Similarity=0.268  Sum_probs=96.6

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMG  142 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~  142 (321)
                      ....+|-++....+.......+.+++.+++.++.+|+|+|+++.++.++.+++..+..+.+  +.+.+++..++.+++.+
T Consensus       263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~  342 (467)
T COG2211         263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG  342 (467)
T ss_pred             EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence            4444676777778888888888888899999999999999999999999999998888765  67888888899999999


Q ss_pred             hhcchhhhhhhccCC-----Cccc--hhHHhHHHHHHHHHHHHHHHhhcc
Q 020792          143 LLSYVVPVYIAEITP-----KNLR--GGFTTVHQLMICIGVSMTYLIGAF  185 (321)
Q Consensus       143 ~~~~~~~~~~~~~~~-----~~~r--~~~~~~~~~~~~~g~~~~~~i~~~  185 (321)
                      ...+..+++++|..+     +.+|  |...+......=+|..++..+.++
T Consensus       343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988763     2223  666677666666666666555443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.98  E-value=1.8e-08  Score=90.92  Aligned_cols=136  Identities=12%  Similarity=-0.113  Sum_probs=90.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-h-----hhhHHHHHHHHHHhhhhhhhcc
Q 020792           73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-S-----KAAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        73 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      .........+..+...+..+++|+++||+|+|+++.++.+..+++...... .     .+++.+.+..+...++.|....
T Consensus       285 ~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng  364 (462)
T PRK15034        285 DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG  364 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch
Confidence            333333445566788889999999999999999999998877776643222 1     2455555555555555555566


Q ss_pred             hhhhhhhccCCC------c---------------cchhHHhHHHHHHHHHHHHHHHhhcch-----hhHHHHHHhHHHHH
Q 020792          147 VVPVYIAEITPK------N---------------LRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCL  200 (321)
Q Consensus       147 ~~~~~~~~~~~~------~---------------~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~~~~~~~~~~  200 (321)
                      ....++.+.+|+      +               +-|.+.|+......+|+.+.|.+-+..     ++...|+...+..+
T Consensus       365 svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~  444 (462)
T PRK15034        365 STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYI  444 (462)
T ss_pred             HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            666677777764      1               236778888888888877777554333     46667777666666


Q ss_pred             HHHHHhhc
Q 020792          201 VQLIGLCF  208 (321)
Q Consensus       201 ~~~~~~~~  208 (321)
                      ++.+..++
T Consensus       445 ~~~~~~w~  452 (462)
T PRK15034        445 VCVLLTWL  452 (462)
T ss_pred             HHHHHHHH
Confidence            66555544

>PRK09669 putative symporter YagG; Provisional

Probab=98.93  E-value=1.3e-07  Score=86.31  Aligned_cols=114  Identities=14%  Similarity=0.211  Sum_probs=85.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHhhhhhhhcchhhh
Q 020792           73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVGYGMGLLSYVVPV  150 (321)
Q Consensus        73 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~  150 (321)
                      ++..+.+.....+..+++.+++++++||+|+|+.+.++.++.+++.....+  .++.+.+.+..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666677888889999999999999999998887766654433222  356667777888999999999999999


Q ss_pred             hhhccCCC------ccc-hhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          151 YIAEITPK------NLR-GGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       151 ~~~~~~~~------~~r-~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +++|..+.      ++| |...+.......+|..+++.+++.+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998752      222 6677888777788888887777554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.1e-09  Score=95.76  Aligned_cols=174  Identities=16%  Similarity=0.030  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHhhcccccccchhccccccCCChhhHHH--------H-HHHHHHHHHHHHHhHHHhhhhccchHHHHHH
Q 020792           40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSL--------F-GSILTIGAMIGAIMSGKIADYIGRRGTMGFS  110 (321)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~-~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~  110 (321)
                      .++..+..++..-..+...+.....+.+..|+.+.+...        . ..+...+++.|-.+...++|++|||+..+.+
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G  384 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG  384 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence            344445556655555544455555666666665443222        1 1222333334666677899999999999999


Q ss_pred             HHHHHHHHHHHHHhhh----hHHHHHHHHHHhh-hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc
Q 020792          111 DIVCIIGWVIIVFSKA----AWWLDLGRLLVGY-GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF  185 (321)
Q Consensus       111 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  185 (321)
                      .+++++..+..+...|    ...+++...+..+ +.-+.......+-+|.||.+.|++..|+.....-.|++++...-..
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~  464 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLY  464 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence            9999999988887655    2223333333332 2222344456777999999999999999998888888777654433


Q ss_pred             ---------hhhHHHHHHhHHHHHHHHHHhhcccCCh
Q 020792          186 ---------LNWRILALIGTIPCLVQLIGLCFIPESP  213 (321)
Q Consensus       186 ---------~~w~~~~~~~~~~~~~~~~~~~~~~e~~  213 (321)
                               .+.++++++.+.+.++..+..+++||++
T Consensus       465 ~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  465 LTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             hhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence                     3788999999999999998889999984

>TIGR01272 gluP glucose/galactose transporter

Probab=98.91  E-value=2.3e-08  Score=86.48  Aligned_cols=88  Identities=15%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             HHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---------------
Q 020792          122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---------------  186 (321)
Q Consensus       122 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---------------  186 (321)
                      +...+++.++++.++.|.|.+...+..+.++++..|++++++.+++.+..+.+|..++|.+++.+               
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34578999999999999999999999999999999999899999999999999999999988632               


Q ss_pred             -----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          187 -----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       187 -----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                           .|+++|++.+.+.++..+.+.+.
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~  112 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFL  112 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 58888887766655544444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.89  E-value=1.2e-07  Score=80.83  Aligned_cols=169  Identities=17%  Similarity=0.131  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc-chHHHHHHHHH
Q 020792           35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-RRGTMGFSDIV  113 (321)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~  113 (321)
                      +..|.+...+.+..+.++...    ..+|.+..|.|+|..+.|++.+...+.....++....+.+|.. +|+..+...++
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~----~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVI----GWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHH----HHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            445666666666666665544    4567788899999999999999999999999999999999664 66666666777


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccc-hhHHhHHHHHHHHHHHHHHHhhcch-----h
Q 020792          114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR-GGFTTVHQLMICIGVSMTYLIGAFL-----N  187 (321)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~~-----~  187 (321)
                      +.++.+.+.+.+....+.- -++.|++.|..++.....+.+-.+..+. +...++.+....+=..++|.+.+++     +
T Consensus       284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs  362 (395)
T COG2807         284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS  362 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence            7777666655543221111 4899999999999999999888776554 6666666666555566888888887     8


Q ss_pred             hHHHHHHhHHHHHHHHHHhhc
Q 020792          188 WRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       188 w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      |+..++..+...++..+.-+.
T Consensus       363 w~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         363 WSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHhh
Confidence            999888877777766665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.89  E-value=1.7e-08  Score=91.14  Aligned_cols=126  Identities=21%  Similarity=0.368  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhhhcchhhhhhhccCCCc
Q 020792           82 ILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY--GMGLLSYVVPVYIAEITPKN  159 (321)
Q Consensus        82 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~~~~~~~~~~~~~~~~~~~~  159 (321)
                      ...+...+.++..|.++||+|||..+.+..+...+..++..+.. +| +++   +.++  +.+..+....++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchh
Confidence            34677888999999999999999999999988888877776665 33 333   3433  33456777889999999999


Q ss_pred             cchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          160 LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       160 ~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      +|....++.+.....+..++|.+++..    +.-.++.+..+..++..+.. +++||+
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999999998888888888888776    66677888887777776665 567887

>PRK11043 putative transporter; Provisional

Probab=98.87  E-value=1.8e-07  Score=83.99  Aligned_cols=124  Identities=14%  Similarity=0.069  Sum_probs=92.8

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HH--hhhhHHHHHHHHH
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VF--SKAAWWLDLGRLL  136 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l  136 (321)
                      .|.+.+++|.+..+.++......++..++.+..+++.||+|+|+.+....+..+++....   ..  .++.+.+++...+
T Consensus       226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (401)
T PRK11043        226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV  305 (401)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            444556789999999998888889999999999999999999987766555544443322   22  2344555566677


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      .|++.+..++.......|..| ++|+++.++.+.....+...++.+.+.+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            888888888888888777776 5699999999988776766776666655

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.87  E-value=7.1e-08  Score=82.39  Aligned_cols=145  Identities=28%  Similarity=0.417  Sum_probs=112.8

Q ss_pred             cccccchhccccccCCCh--hhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhh--hHHHH
Q 020792           56 GYSSPAQSGITNDLGLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA--AWWLD  131 (321)
Q Consensus        56 ~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~  131 (321)
                      .......+.+..+++.+.  ...++..+...++..++.++.|.++||+|||+.+..+.....++.++..+..+  .+.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (338)
T COG0477          19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLL   98 (338)
T ss_pred             chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            333445555666666555  47899999999999999999999999999998888888765666666666665  88899


Q ss_pred             HHHHHHhhhhhhhcchhhhhhhccCCC-ccchhHHhHHHH-HHHHHHHHHHHhhcch------hhHHHHHHhHHHHH
Q 020792          132 LGRLLVGYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQL-MICIGVSMTYLIGAFL------NWRILALIGTIPCL  200 (321)
Q Consensus       132 ~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~  200 (321)
                      +.|++.|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.++..+      +|+..+........
T Consensus        99 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (338)
T COG0477          99 ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL  175 (338)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            999999999999999999999999998 668888888877 5777777777665443      68886665555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.86  E-value=4e-07  Score=85.95  Aligned_cols=145  Identities=20%  Similarity=0.278  Sum_probs=114.8

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh-hccchHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHH
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-YIGRRGTMGFSDIVCIIGWVIIVFSKA--------AWWLDLG  133 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~  133 (321)
                      -++.+.+|.+.+.+..+...+....-+..+++|+++| ++||++.++++.++..++..+.++...        ....+++
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g   91 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG   91 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence            3456678999998888888888888888999999999 569999999999999999888776421        1235566


Q ss_pred             HHHHhhhhhhhcchhhhhhhccCCCcc---chhHHhHHHHHHHHHHHHHHHhhcch-----------hhHHHHHHhHHHH
Q 020792          134 RLLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMICIGVSMTYLIGAFL-----------NWRILALIGTIPC  199 (321)
Q Consensus       134 ~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~-----------~w~~~~~~~~~~~  199 (321)
                      -.+..+|.|+.-+...+...|.+++++   |-....+++.+.++|+.+++.+..++           +|...|.+.++..
T Consensus        92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m  171 (654)
T TIGR00926        92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM  171 (654)
T ss_pred             HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence            777888999999999999999998653   46677888888999998887776554           3888888888777


Q ss_pred             HHHHHHhh
Q 020792          200 LVQLIGLC  207 (321)
Q Consensus       200 ~~~~~~~~  207 (321)
                      +++++...
T Consensus       172 ~ia~lvf~  179 (654)
T TIGR00926       172 ILALIVFM  179 (654)
T ss_pred             HHHHHHHH
Confidence            77766543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.86  E-value=3.9e-08  Score=90.06  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=114.2

Q ss_pred             ccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHH
Q 020792           66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS----------KAAWWLDLGRL  135 (321)
Q Consensus        66 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  135 (321)
                      .+.+|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++.......          ++.+.+....+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            35689999999999999999999999999999999999999999999988877554311          23334555567


Q ss_pred             HHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h-----hHHHHH---HhHHHHHHHH
Q 020792          136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-----WRILAL---IGTIPCLVQL  203 (321)
Q Consensus       136 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-----w~~~~~---~~~~~~~~~~  203 (321)
                      +.+++.+..+.....++.+..|++++|+..++.....++|..+++.+++.+    |     ++..+.   +..+..++.+
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l  439 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL  439 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence            888888888999999999999999999999999999999999888877665    3     333333   2333444444


Q ss_pred             HHhhcccC
Q 020792          204 IGLCFIPE  211 (321)
Q Consensus       204 ~~~~~~~e  211 (321)
                      ...+++|+
T Consensus       440 ~~~~llP~  447 (468)
T TIGR00788       440 PLLHLLPR  447 (468)
T ss_pred             HHHHhCCC
Confidence            44456785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.85  E-value=3.3e-11  Score=109.96  Aligned_cols=151  Identities=21%  Similarity=0.176  Sum_probs=97.9

Q ss_pred             cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH--H---hhh----hHHH
Q 020792           60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV--F---SKA----AWWL  130 (321)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~~----~~~~  130 (321)
                      .+.+.+.++.+.+..  -.......+...++.++..++.||+|||++++.+.++.+++.+..+  .   .++    -...
T Consensus       274 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (451)
T PF00083_consen  274 YYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS  351 (451)
T ss_pred             ccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344557777777766  2233344455666777778999999999999999988888877664  1   111    1112


Q ss_pred             HHHHHHHhhhhh-hhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHH-
Q 020792          131 DLGRLLVGYGMG-LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI-  204 (321)
Q Consensus       131 ~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~-  204 (321)
                      ++.-.+..++.+ +..+....+..|.+|++.|+++.++......++..+++.+...+    +-...+.+.+++.++..+ 
T Consensus       352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~  431 (451)
T PF00083_consen  352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF  431 (451)
T ss_pred             ceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence            222222222222 34566668889999999999999999988888887777666554    312344555555444444 


Q ss_pred             HhhcccCC
Q 020792          205 GLCFIPES  212 (321)
Q Consensus       205 ~~~~~~e~  212 (321)
                      ..+++||+
T Consensus       432 ~~~~lpET  439 (451)
T PF00083_consen  432 VYFFLPET  439 (451)
T ss_pred             eeEEEeeC
Confidence            44678999

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.79  E-value=1.5e-08  Score=89.68  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=84.0

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF--SK--AAWWLDLGRLLVGY  139 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~G~  139 (321)
                      ++++.+|.+..+.+.+.++..++..++.+++|+++||+|||+.+..+....+.+..+..+  ..  +.+...+...+.++
T Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (366)
T TIGR00886       251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF  330 (366)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            466678999999999999999999999999999999999998887777666666555443  22  45544455555555


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHH
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIG  175 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  175 (321)
                      +.|...+.....+.+..| ++||.+.|+.+...++|
T Consensus       331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            556666667777888887 57899999988776554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=5.2e-07  Score=83.79  Aligned_cols=154  Identities=20%  Similarity=0.107  Sum_probs=97.8

Q ss_pred             cccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhh----------
Q 020792           58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA----------  127 (321)
Q Consensus        58 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~----------  127 (321)
                      ...+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+.....          
T Consensus       314 ~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~  392 (513)
T KOG0254|consen  314 VFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKG  392 (513)
T ss_pred             EEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence            345556677777766544 566667777777888888999999999999999999999999877753111          


Q ss_pred             ---HHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhc----chhhHHHHHHhHHHHH
Q 020792          128 ---WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA----FLNWRILALIGTIPCL  200 (321)
Q Consensus       128 ---~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~----~~~w~~~~~~~~~~~~  200 (321)
                         ..+...-+.......+..++.+.+.+|.+|.+.|+++.++......+...+-.....    ..++...|.+.+..+.
T Consensus       393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~  472 (513)
T KOG0254|consen  393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICL  472 (513)
T ss_pred             hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence               111111122222223345555678899999999999888877665555433222211    1122445555444444


Q ss_pred             HHHH--HhhcccCC
Q 020792          201 VQLI--GLCFIPES  212 (321)
Q Consensus       201 ~~~~--~~~~~~e~  212 (321)
                      +...  ..+++||+
T Consensus       473 ~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  473 LSLIIFVFFFVPET  486 (513)
T ss_pred             HHHHHHheEEcccC
Confidence            4444  44678998

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.79  E-value=3.1e-07  Score=82.30  Aligned_cols=122  Identities=20%  Similarity=0.164  Sum_probs=92.5

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHH-HHHHHHHHHHH--hhhhHHHHHHHHHHhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDI-VCIIGWVIIVF--SKAAWWLDLGRLLVGYGM  141 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~  141 (321)
                      +.+.+|.+..+.+++.....++..+++++.+++.||++++........ ...+.......  ..+.+.+.+..++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            555589999999999999999999999999999999984443322222 22222222222  234566777788899999


Q ss_pred             hhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcchh
Q 020792          142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN  187 (321)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  187 (321)
                      +..++....+..|.+| ++++...++.+....+|..+++.+++.+.
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999887 56899999999999999999999887773

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.75  E-value=5.6e-07  Score=78.49  Aligned_cols=121  Identities=19%  Similarity=0.245  Sum_probs=94.3

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc-----chHHHH-HHHHHHHHHHHHHHH-----hh-------h
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-----RRGTMG-FSDIVCIIGWVIIVF-----SK-------A  126 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~-~~~~~~~~~~~~~~~-----~~-------~  126 (321)
                      +..|++++..-.+.+.++..+... ..+.+|+.||+.+     ||..++ .|.+..+.+..+..+     +.       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            456788898888888888877655 5899999999999     886654 455555555544443     22       2


Q ss_pred             hH----HHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          127 AW----WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       127 ~~----~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      .+    ...++..+.|++.+...+...+++.|..|+++|+++.++......+|.+++..+.+.+
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    3445567889999999999999999999999999999999999999999888877665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.75  E-value=7.7e-08  Score=87.25  Aligned_cols=164  Identities=13%  Similarity=0.091  Sum_probs=106.7

Q ss_pred             HHHHHHhhcccccccchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccc---------hHHHHHHHHHHH
Q 020792           46 CGSYVFGSAIGYSSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR---------RGTMGFSDIVCI  115 (321)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr---------r~~l~~~~~~~~  115 (321)
                      +..+........+..+.| ++.+-+|.+..+.|++.++..+...+..+++|.++||.-+         |..=.++....+
T Consensus       265 ~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~a  344 (466)
T KOG2532|consen  265 ISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPA  344 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHH
Confidence            333333333333444555 5777899999999999999999999999999999998855         223344555555


Q ss_pred             HHHHHHHHhhhhHH-HHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch-------h
Q 020792          116 IGWVIIVFSKAAWW-LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-------N  187 (321)
Q Consensus       116 ~~~~~~~~~~~~~~-~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-------~  187 (321)
                      ++.+..++.++... ..+.-+..+.+..+........-....-+++-+..+++.+....+..+++|.+.+.+       .
T Consensus       345 i~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~e  424 (466)
T KOG2532|consen  345 VFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREE  424 (466)
T ss_pred             HHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHH
Confidence            55555565542111 111111122222222222222222221455679999999999999999999998776       7


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcc
Q 020792          188 WRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       188 w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      |+.+|++.+++.++..+.+.++
T Consensus       425 W~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  425 WRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHhchheeEe
Confidence            9999999999888877666444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.73  E-value=3.9e-07  Score=83.67  Aligned_cols=132  Identities=15%  Similarity=0.187  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhccc-----hHHH--HHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHhh
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIADYIGR-----RGTM--GFSDIVCIIGWVIIVF---------SKAAWWLDLGRLLVGY  139 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-----r~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~  139 (321)
                      .+++.++..+..++.+++..++..|.+|     +...  .+|+++.+++....++         ..+.++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6788888888888888876654333333     3433  7788888888777664         4688899999999999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      |.....|...+++.+..|++.||++++++.....+|..+++.+....    +|...|...++..++..++.+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988887654    677777777766665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.70  E-value=7.8e-07  Score=82.23  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHhH----HHhhhhccchHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHhhhhh
Q 020792           76 YSLFGSILTIGAMIGAIMS----GKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA---------AWWLDLGRLLVGYGMG  142 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~~  142 (321)
                      .+++.++..+...+..++.    +++.||++.++.+.++.++.+++..+.+...+         .++++...++.|++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4566666666666666665    66666666678889999999999888777654         4578889999999999


Q ss_pred             hhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch--------------hhHHHHHHhHHHHHHHHHH
Q 020792          143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------NWRILALIGTIPCLVQLIG  205 (321)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~~~~~~~~~~~~~~~~  205 (321)
                      ...|...+++.+..|++.||+++|.+..+..+|..++..+.+..              +..+.|...++..++..++
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988888877776665311              2556776666655544333

>PRK11462 putative transporter; Provisional

Probab=98.68  E-value=8.7e-07  Score=81.08  Aligned_cols=112  Identities=12%  Similarity=0.169  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHhhhhhhhcchhhh
Q 020792           73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--KAAWWLDLGRLLVGYGMGLLSYVVPV  150 (321)
Q Consensus        73 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~  150 (321)
                      +...+.+...+.++.+++.+++++++||+|+|+++..+..+.++..++..+.  ++.+.+.+.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667788888999999999999999999998776555444433333332  22333444556677777666666677


Q ss_pred             hhhccCC-----Cccc--hhHHhHHHHHHHHHHHHHHHhhc
Q 020792          151 YIAEITP-----KNLR--GGFTTVHQLMICIGVSMTYLIGA  184 (321)
Q Consensus       151 ~~~~~~~-----~~~r--~~~~~~~~~~~~~g~~~~~~i~~  184 (321)
                      +++|..+     +.+|  |...+......-+|..+++.+++
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g  382 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG  382 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777655     2233  55456555666666666655543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.66  E-value=2.7e-07  Score=83.53  Aligned_cols=150  Identities=19%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             chhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc-----chHHHHHHHHHHHHHHHHHHHh----hhhHHHH
Q 020792           61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-----RRGTMGFSDIVCIIGWVIIVFS----KAAWWLD  131 (321)
Q Consensus        61 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~----~~~~~~~  131 (321)
                      ..+++.+++|+++.+...+.++..+-..+ .++.|.++|-+-     ||+-++++.++.+++.+..+..    .+.....
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~   90 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence            44568899999999999888888887665 477899999773     5556666776665555555542    3455666


Q ss_pred             HHHHHHhhhhhhhcchhhhhhhccCC--CccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHH
Q 020792          132 LGRLLVGYGMGLLSYVVPVYIAEITP--KNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG  205 (321)
Q Consensus       132 ~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~  205 (321)
                      +.-++..++......+.-+++.|...  ++.||...+.......+|.+++..+++.+    +++..|.+.+++.++..+.
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            67788888999999999999999873  33367778888888888888888777665    6778888877776666555


Q ss_pred             hhcccC
Q 020792          206 LCFIPE  211 (321)
Q Consensus       206 ~~~~~e  211 (321)
                      .+++.|
T Consensus       171 ~~~~~~  176 (433)
T PF03092_consen  171 ALFLLE  176 (433)
T ss_pred             HHHhhh
Confidence            554443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.64  E-value=1.2e-07  Score=63.91  Aligned_cols=75  Identities=15%  Similarity=0.273  Sum_probs=69.1

Q ss_pred             cccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 020792           56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWL  130 (321)
Q Consensus        56 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  130 (321)
                      ..+.|.+|.++++.++|.++.+++.+.+.+|+.+|.+...++.++..+++.+..+.+...++...+++.++.+.+
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            344789999999999999999999999999999999999999999999999999999999999999998887654

Note that many members are hypothetical proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.62  E-value=1.6e-06  Score=75.72  Aligned_cols=145  Identities=18%  Similarity=0.357  Sum_probs=116.7

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh-hccchHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHH
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-YIGRRGTMGFSDIVCIIGWVIIVF---SKAAWWLDLGRLLV  137 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~  137 (321)
                      -|+=.+-||++..+...++.....|..++....|++.. |.++++.-.+++...+++..+..+   ..+.+.+...-++.
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~  311 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLL  311 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            33456779999999999999999999999999998777 788888888888887777665444   46778899999999


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch--------------hhHHHHHHhHHHHHHHH
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------NWRILALIGTIPCLVQL  203 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~~~~~~~~~~~~~~  203 (321)
                      |++.|.......+.+.++..+++-|..+|.......++..++..+++.+              +|..+|.+.++..++++
T Consensus       312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~  391 (403)
T PF03209_consen  312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAAL  391 (403)
T ss_pred             HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence            9999999888899999999988889999999888877777776666543              46667777776666555


Q ss_pred             HHh
Q 020792          204 IGL  206 (321)
Q Consensus       204 ~~~  206 (321)
                      .+.
T Consensus       392 ~ll  394 (403)
T PF03209_consen  392 VLL  394 (403)
T ss_pred             HHH
Confidence            544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=1.1e-06  Score=79.17  Aligned_cols=114  Identities=11%  Similarity=0.029  Sum_probs=87.3

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhh
Q 020792           70 GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVP  149 (321)
Q Consensus        70 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  149 (321)
                      +.+....+...+.+..+..+|.++++++.||+++|+++.++.++.+++.++..+.++... ..+-++.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            445555566677777888999999999999999999999998888888888887766543 5667788888899999999


Q ss_pred             hhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          150 VYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       150 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      +...+..+++.+....++.. + .+|..+.|.+.+.+
T Consensus       344 sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~  378 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFI  378 (410)
T ss_pred             HHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHH
Confidence            99999998765433333333 2 27877787777665

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=8.4e-08  Score=82.66  Aligned_cols=153  Identities=17%  Similarity=0.095  Sum_probs=117.4

Q ss_pred             cccccccchhc-cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc--chHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 020792           54 AIGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIGWVIIVFSKAAWWL  130 (321)
Q Consensus        54 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~  130 (321)
                      ...+.-|.++. +.+++..+..+.|+..--..+.+.++..+.|.++||++  |-.....+.+...+++....+++++..+
T Consensus       285 ~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L  364 (464)
T KOG3764|consen  285 SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL  364 (464)
T ss_pred             hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence            33334454443 56677756668898888899999999999999999999  5445556666677777788889999999


Q ss_pred             HHHHHHHhhhhhhhcchhhhhhhccCCCcc------chhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHH
Q 020792          131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNL------RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL  200 (321)
Q Consensus       131 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~  200 (321)
                      .+-++..|++.+...........+..+.++      -|...++...++.+|..++|.+++.+    |.+|.-.+.++..+
T Consensus       365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~  444 (464)
T KOG3764|consen  365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNL  444 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHH
Confidence            999999998888887777777777665443      36778888889999999999999887    77887777777666


Q ss_pred             HHHHHh
Q 020792          201 VQLIGL  206 (321)
Q Consensus       201 ~~~~~~  206 (321)
                      +...+.
T Consensus       445 iyapvl  450 (464)
T KOG3764|consen  445 IYAPVL  450 (464)
T ss_pred             HHHHHH
Confidence            554444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.57  E-value=1.2e-07  Score=84.73  Aligned_cols=144  Identities=20%  Similarity=0.239  Sum_probs=119.2

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      -.++++-.+...|........+-++.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|+.+-.-+++|+..+..
T Consensus       397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali  476 (618)
T KOG3762|consen  397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI  476 (618)
T ss_pred             HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence            45677767777787788888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhccCCCccchhHHhHHHHH-HHHHHHHHHHhhc----chhhHHHHHHhHHHHHHHHHHhhc
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQLM-ICIGVSMTYLIGA----FLNWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~----~~~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      +....+|++...||+.|.++.++.... .++|-.+|.+|++    .++-|..|.+.++.+++.++....
T Consensus       477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888887654 3445445555554    447788888877777766655433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.50  E-value=3.6e-06  Score=77.53  Aligned_cols=131  Identities=15%  Similarity=0.237  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhccchHH-------HHHHHHHHHHHHHHHH-----Hh-----hhhHHHHHHHHHHh
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGT-------MGFSDIVCIIGWVIIV-----FS-----KAAWWLDLGRLLVG  138 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~G  138 (321)
                      .+++.++..+..++.+++.+++.||+|+|+.       +.+|+++.+++.+..+     +.     .+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3556667777788899999999999999973       6677777666654321     21     34677778889999


Q ss_pred             hhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch--------------hhHHHHHHhHHHHHHHHH
Q 020792          139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------NWRILALIGTIPCLVQLI  204 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~~~~~~~~~~~~~~~  204 (321)
                      +|.+...+....++.+..|++.++.++++++....+|..++..+++..              ...+.|...++..++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888777433              234566666655554444


Q ss_pred             Hh
Q 020792          205 GL  206 (321)
Q Consensus       205 ~~  206 (321)
                      +.
T Consensus       471 ~~  472 (489)
T PRK10207        471 VM  472 (489)
T ss_pred             HH
Confidence            44

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.43  E-value=1e-06  Score=58.88  Aligned_cols=60  Identities=22%  Similarity=0.341  Sum_probs=51.2

Q ss_pred             cccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH
Q 020792           54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV  113 (321)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  113 (321)
                      ..+...|++|...++.|++..+.|.+.++..+...++.+++|+++||+++++.++.....
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            334446777777788999999999999999999999999999999999999987766544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.42  E-value=8e-06  Score=62.53  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=88.7

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhh
Q 020792           71 LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPV  150 (321)
Q Consensus        71 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  150 (321)
                      +++..-..-.++......+..++.+.+.+++|.|+.++++.++..+-... -+-++.+.++.+-++.|++.+..++....
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            34444444566777778888889999999999999999999988764443 34567788899999999999999999999


Q ss_pred             hhhccCCCccchhHHhHHHHHHHHHHHHHHHhh
Q 020792          151 YIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       151 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      ++.+...++.|++..++.-.....+.++|.++.
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999899888877766666666655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.40  E-value=0.00012  Score=66.53  Aligned_cols=123  Identities=7%  Similarity=0.071  Sum_probs=88.4

Q ss_pred             ccccccCC-----ChhhHHHHHHHHHHHHHHH-HHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh-----h-------
Q 020792           64 GITNDLGL-----SVAEYSLFGSILTIGAMIG-AIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----K-------  125 (321)
Q Consensus        64 ~~~~~~~~-----s~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~-------  125 (321)
                      .+++.+.+     +.+...++-+...+...+. .++.+++++|++|++++-+......+...++++.     +       
T Consensus        28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~  107 (472)
T TIGR00769        28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL  107 (472)
T ss_pred             hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence            35666555     4467888888777766666 8899999999999999877766666665555442     0       


Q ss_pred             -------------------hhHHHHHHHHHHhhhhhhhcc-hhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc
Q 020792          126 -------------------AAWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF  185 (321)
Q Consensus       126 -------------------~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  185 (321)
                                         +.|...+..+...+....... ..+.+++|.++.++-.+..++...+.++|.++++.+..+
T Consensus       108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~  187 (472)
T TIGR00769       108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY  187 (472)
T ss_pred             HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               123333333444444344444 678999999999988999999999999999999987766


Q ss_pred             h
Q 020792          186 L  186 (321)
Q Consensus       186 ~  186 (321)
                      +
T Consensus       188 ~  188 (472)
T TIGR00769       188 F  188 (472)
T ss_pred             H
Confidence            4

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.38  E-value=1e-05  Score=70.36  Aligned_cols=125  Identities=11%  Similarity=0.138  Sum_probs=99.1

Q ss_pred             ccchhc-cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 020792           59 SPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV  137 (321)
Q Consensus        59 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (321)
                      ...++. +.+..|.+..+.+...+.+..+.++|.+.+-++..|+...+.+.+..++..+.++..++.++... +.+-++.
T Consensus       256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~~l~~i  334 (422)
T COG0738         256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LYALFLI  334 (422)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHH
Confidence            334443 44448999999999999999999999999999999999999999999998888888888888554 3455788


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      |+..+..+|...+...+..| ++ +...+..-....+|+.+.|.+.+++
T Consensus       335 g~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i  381 (422)
T COG0738         335 GLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVI  381 (422)
T ss_pred             HHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHH
Confidence            99999999999999999998 33 3333444444456777777777766

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.38  E-value=2e-05  Score=68.96  Aligned_cols=105  Identities=22%  Similarity=0.266  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHhhhhccchHH-HHHHHHHHHHHHHHHHHhhh--h-HHHHHHHHHHhhhhhhhcchhh
Q 020792           74 AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGT-MGFSDIVCIIGWVIIVFSKA--A-WWLDLGRLLVGYGMGLLSYVVP  149 (321)
Q Consensus        74 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~G~~~~~~~~~~~  149 (321)
                      +..+...++..+..++.+|+.|.++|+.|+|+. +-+...+..++..+.++.++  + +..++...+..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            346788899999999999999999999996664 45555666666666666544  4 4455556777888888889999


Q ss_pred             hhhhccCCCccchhHHhHHHHHHHHHHHH
Q 020792          150 VYIAEITPKNLRGGFTTVHQLMICIGVSM  178 (321)
Q Consensus       150 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  178 (321)
                      +++.+..++++-++..+.-.....+|+.+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i  166 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVI  166 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchH
Confidence            99999999877777766655544455433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.36  E-value=2.6e-05  Score=70.40  Aligned_cols=133  Identities=11%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV-----FSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~G~  139 (321)
                      +++.+|.+..+.++.......+..++..+.+.+.+|.++++.+.....+..++..+..     ..++++..++..++.++
T Consensus       245 l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~  324 (413)
T PRK15403        245 LIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAF  324 (413)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            5566799999999998888888888888888876554444443322222223322222     12333345667778888


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHH
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIP  198 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~  198 (321)
                      |.+...+......-+- ....+|++.++.+.....+...++...+++   +-...+...+++
T Consensus       325 G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  385 (413)
T PRK15403        325 GIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVV  385 (413)
T ss_pred             HHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            8888777776433211 222368888888777766666666666655   334455444443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.35  E-value=1.5e-05  Score=72.53  Aligned_cols=137  Identities=13%  Similarity=0.024  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHhhh---------------------hHHHHHHH
Q 020792           77 SLFGSILTIGAMIGAIMSGKIADYIG-RRGTMGFSDIVCIIGWVIIVFSKA---------------------AWWLDLGR  134 (321)
Q Consensus        77 ~~~~~~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  134 (321)
                      .+....+.+...+.+++..++.+|+| ||++..++.++.+++.....+.++                     .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            34555666666678888899999999 477778998888888777665432                     36677888


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccc--hhHHhHHHHHHHHHHHHHHHhhcch------hhHHHHHHhHHHHHHHHHHh
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~  206 (321)
                      .+.|+..+..+..=++++++..+++.|  |..+|+.|.+..+.+++..+..+.+      +-...+.+.++..+++.+..
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            999999999999999999999996444  9999999999999988877655543      23456677777777776666


Q ss_pred             -hcccCCh
Q 020792          207 -CFIPESP  213 (321)
Q Consensus       207 -~~~~e~~  213 (321)
                       +.+|+++
T Consensus       468 ~~~~~~~~  475 (477)
T TIGR01301       468 LILLPRPR  475 (477)
T ss_pred             HHhCCCCC
Confidence             4467653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.23  E-value=1.6e-05  Score=73.91  Aligned_cols=140  Identities=19%  Similarity=0.182  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHhhhhccchH-HHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHhhhhhhhcchhhhh
Q 020792           75 EYSLFGSILTIGAMIGAIMSGKIADYIGRRG-TMGFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVGYGMGLLSYVVPVY  151 (321)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~  151 (321)
                      ..++......++..+++++.|.+..+++|-| .++++.+++.+++-+++.  .+|....++.-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            5678888899999999999999998887554 456776666655444443  3455566677888999988877777777


Q ss_pred             hhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---------------------------------------------
Q 020792          152 IAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---------------------------------------------  186 (321)
Q Consensus       152 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---------------------------------------------  186 (321)
                      ..-..|+++-+.+.++......+|+.++..+-..+                                             
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i  509 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI  509 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence            77777887779999998888888766665433100                                             


Q ss_pred             ---------------------hhHHHHHHhHHHHHHHHHHhhcccCChH
Q 020792          187 ---------------------NWRILALIGTIPCLVQLIGLCFIPESPR  214 (321)
Q Consensus       187 ---------------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~  214 (321)
                                           ++|++|+.....+.++++..+++++..+
T Consensus       510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~  558 (599)
T PF06609_consen  510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDK  558 (599)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence                                 4788899888888888888888876643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.21  E-value=0.00014  Score=66.15  Aligned_cols=122  Identities=10%  Similarity=0.212  Sum_probs=108.0

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHH-HhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSG-KIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG  142 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  142 (321)
                      ++...+++++++.+.+.+.......+++.+.. .+...+|-|+++.+|++.-.+...+.+++++.|+++....+.++. .
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~  345 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G  345 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence            46778999999999988888888888887776 788899999999999999999999999999999999988888877 4


Q ss_pred             hhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ...+...+.++.+.+++++|++.++......+..+++|.+-+.+
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            67888999999999999999999999999999888888766544

>PTZ00207 hypothetical protein; Provisional

Probab=98.17  E-value=1.4e-05  Score=74.39  Aligned_cols=142  Identities=11%  Similarity=0.093  Sum_probs=100.7

Q ss_pred             cccccc-CCCh-hhHHH-HHHHHHHHHHHHHHhHHHhhhh---------ccchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 020792           64 GITNDL-GLSV-AEYSL-FGSILTIGAMIGAIMSGKIADY---------IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD  131 (321)
Q Consensus        64 ~~~~~~-~~s~-~~~~~-~~~~~~~~~~i~~~~~g~l~dr---------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  131 (321)
                      .|.+.+ |.+. ++... +.++..++..+|.+..|.++..         +.|--.+.+..+ +.++.++.++.-....+.
T Consensus       378 qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~  456 (591)
T PTZ00207        378 FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALP  456 (591)
T ss_pred             HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhH
Confidence            355666 6522 32222 7889999999999999988721         222223344444 666666666654446889


Q ss_pred             HHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHH-HHhhcch--------------h---hHHHHH
Q 020792          132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT-YLIGAFL--------------N---WRILAL  193 (321)
Q Consensus       132 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~i~~~~--------------~---w~~~~~  193 (321)
                      +..++.|++.|..+++....++|+|. |+-|+-..+...+..+|+.+- ..+.+.+              |   .+.+|+
T Consensus       457 ~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~  535 (591)
T PTZ00207        457 LPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLA  535 (591)
T ss_pred             HHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHH
Confidence            99999999999999999999999999 878888888888888887764 2333322              1   667888


Q ss_pred             HhHHHHHHHHHHhh
Q 020792          194 IGTIPCLVQLIGLC  207 (321)
Q Consensus       194 ~~~~~~~~~~~~~~  207 (321)
                      +.+.+++++.+...
T Consensus       536 v~~~~~~~g~~~s~  549 (591)
T PTZ00207        536 FLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888777776653

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.16  E-value=1.1e-05  Score=73.60  Aligned_cols=142  Identities=12%  Similarity=-0.004  Sum_probs=89.5

Q ss_pred             hhcccccccchhccccc-cCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh----ccchHHHHHHHHHHHHHH-HHHHHhh
Q 020792           52 GSAIGYSSPAQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRRGTMGFSDIVCIIGW-VIIVFSK  125 (321)
Q Consensus        52 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~  125 (321)
                      ....+.....+|.+.++ .|+|..+.+.+.+.+.++.+++.++.|+++||    ..+|........+..+.. .......
T Consensus       286 ~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~  365 (495)
T KOG2533|consen  286 KLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAA  365 (495)
T ss_pred             hhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333344555655555 67999999999999999999999999999999    677777766665555444 4333343


Q ss_pred             hhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccc-hhHHhHHHHHHHHHHHHHHHh-hc----chhhHHHHH
Q 020792          126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR-GGFTTVHQLMICIGVSMTYLI-GA----FLNWRILAL  193 (321)
Q Consensus       126 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i-~~----~~~w~~~~~  193 (321)
                      +........+..+.+.+...+......++...++.| -...+....+.+.+...+|.+ .+    ...|...|.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~  439 (495)
T KOG2533|consen  366 VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFY  439 (495)
T ss_pred             cchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHH
Confidence            344444444444555666677777888888776665 344444444444444444333 32    225666663

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.14  E-value=6.5e-05  Score=70.02  Aligned_cols=131  Identities=16%  Similarity=0.131  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHhhhhhhhcchhhhhhhccCCCc
Q 020792           83 LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIAEITPKN  159 (321)
Q Consensus        83 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  159 (321)
                      ............+.+.|++|||.....+.++..+++++.++.....   ...+...+..++.+..+.....+.+|++|+.
T Consensus       359 ~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~  438 (521)
T KOG0255|consen  359 SGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV  438 (521)
T ss_pred             HHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            3335555666668999999999999999999999999888865443   3455555566666677777899999999999


Q ss_pred             cchhHHhHHHHHHHHHHHHHHHhhcchhh--HH-HHHHhHHHHHHHHHHh-hcccCCh
Q 020792          160 LRGGFTTVHQLMICIGVSMTYLIGAFLNW--RI-LALIGTIPCLVQLIGL-CFIPESP  213 (321)
Q Consensus       160 ~r~~~~~~~~~~~~~g~~~~~~i~~~~~w--~~-~~~~~~~~~~~~~~~~-~~~~e~~  213 (321)
                      .|..+.+.......+|.+++|.+......  .. .+.+.+....+...+. +++||+.
T Consensus       439 ~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  439 VRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999999988755422  11 1222344444444343 7789983

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.07  E-value=1.3e-05  Score=70.62  Aligned_cols=151  Identities=15%  Similarity=0.261  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh----hccchHHHHHH
Q 020792           35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRGTMGFS  110 (321)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~  110 (321)
                      ++......++....+.+..-.++..|    +..+.|++....+.+-...-+...+.+|+.|..+|    ||||||.++..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tP----yl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~  107 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTP----YLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILA  107 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccH----HHHHcCCCcccccccccccccccceecccccccccccccccccccchHHH
Confidence            34444444444445555555544433    55678999888888888888888999999999999    67888766554


Q ss_pred             -HHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchh-HHhHHHHH
Q 020792          111 -DIVCIIGWVIIVFSKAA-----------------WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGG-FTTVHQLM  171 (321)
Q Consensus       111 -~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~  171 (321)
                       .+...++.++..++.++                 ..+++...+.=++.-..+..+-+++.|+....++.+ +++.+...
T Consensus       108 ~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f  187 (498)
T KOG0637|consen  108 GSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF  187 (498)
T ss_pred             hhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence             45566666666654332                 223334444445666778888899999997777655 99999999


Q ss_pred             HHHHHHHHHHhhcchhhH
Q 020792          172 ICIGVSMTYLIGAFLNWR  189 (321)
Q Consensus       172 ~~~g~~~~~~i~~~~~w~  189 (321)
                      ..+|..++..++++.+|+
T Consensus       188 ~avGnvLGY~~g~y~~~~  205 (498)
T KOG0637|consen  188 MAVGNVLGYALGSYLGLY  205 (498)
T ss_pred             HHhcceeeeecccccCce
Confidence            999999999999888765

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.94  E-value=0.0025  Score=57.32  Aligned_cols=42  Identities=21%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH
Q 020792           72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV  113 (321)
Q Consensus        72 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  113 (321)
                      +---.+...-.-.+..++.++..|...||..|.++.-.+.+.
T Consensus        36 sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~   77 (432)
T PF06963_consen   36 SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVV   77 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHH
Confidence            333445555666677788899999999999999987666544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.0013  Score=59.27  Aligned_cols=103  Identities=12%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCc
Q 020792           80 GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN  159 (321)
Q Consensus        80 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  159 (321)
                      .++....+.++.++.+.+.|+.|.|+.+.++..+.........+ .|-+.++++-.+.|+|.+..+.....+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            77888888999999999999999999999999888776554444 55677889999999999999999999999999998


Q ss_pred             cchhHHhHHHHHHHHHHHHHHHhh
Q 020792          160 LRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       160 ~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      .+.+..++.-.....+.++|..+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhh
Confidence            888888877766666666665444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.87  E-value=0.0007  Score=62.14  Aligned_cols=111  Identities=17%  Similarity=0.192  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhccc--hH-----HHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHhh
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIADYIGR--RG-----TMGFSDIVCIIGWVIIVFS---------KAAWWLDLGRLLVGY  139 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~dr~Gr--r~-----~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~  139 (321)
                      .+|..++..+.-++.+|+.+++-.|.+|  |.     =+.+|+++.+++.+++.++         .+.+++++..++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5678888888888899998888777743  21     1677778888877666431         245678888999999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHH-HHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLM-ICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~  186 (321)
                      |.-...|+..+.+++..|++.||.++|.+... ..+|..++..+++..
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999774 367777766665443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.80  E-value=0.00012  Score=63.24  Aligned_cols=121  Identities=12%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             ccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhcc--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 020792           66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        66 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      ...+|+++.|.|-+.+...++..+.+....+..||..  -+-.+..++.+..-..++.+.+.....+.++-.+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            4679999999999999999999999998889999887  77777777777777777778888878888888888888888


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      .-+....++....|..+||..+|+......++-.+||.+++.+
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            8888899999999999999999999999999999999999655

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0045  Score=55.91  Aligned_cols=109  Identities=16%  Similarity=0.319  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhh---hccchHHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHH
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIAD---YIGRRGTMGFSDIVCIIGWVIIVF------------------SKAAWWLDLGR  134 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  134 (321)
                      .+.......+|..+++.+.+.+++   |+||++.+.++.++..+..++...                  .+++....+..
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            455566667777777777777775   678999999998888887776554                  22456777888


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF  185 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  185 (321)
                      ++.|++-+........++.+.+ +++|..+.++.-.-..++..++-.....
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999999 4568777777777666666555444443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.66  E-value=0.01  Score=53.39  Aligned_cols=122  Identities=15%  Similarity=0.132  Sum_probs=84.6

Q ss_pred             cccccC---CChhhHHHHHHHHHH-HHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh---------hh-----
Q 020792           65 ITNDLG---LSVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS---------KA-----  126 (321)
Q Consensus        65 ~~~~~~---~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~-----  126 (321)
                      +.+.+.   .+++..+++=+...+ +..+..++.+++.+++.|++++-.-+.....+.+++++.         ++     
T Consensus        49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~  128 (509)
T COG3202          49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSR  128 (509)
T ss_pred             hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHH
Confidence            445443   345667777777777 778888999999999999999877777777766666640         11     


Q ss_pred             ------------------hHHHHHHHHHHhhhhhhhcc-hhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          127 ------------------AWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       127 ------------------~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                                        .|...+...+.=+-...... .-+....|.+..++-.+..++++.+.+++..++..+..++
T Consensus       129 ~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~  207 (509)
T COG3202         129 DLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL  207 (509)
T ss_pred             HHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                              12222233332222222233 3467788999988889999999999999999888877766

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.61  E-value=0.026  Score=51.85  Aligned_cols=115  Identities=13%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             ChhhHHHHHHHHHH-HHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH---------hh----------------
Q 020792           72 SVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF---------SK----------------  125 (321)
Q Consensus        72 s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---------~~----------------  125 (321)
                      +++....+-....+ +..+...+..+++||++|.+++-+..........+.++         .+                
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            55666666554433 44556777899999999999887766666655555443         01                


Q ss_pred             ------hhHHHHHHHHHHhhhhhhhcc-hhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          126 ------AAWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       126 ------~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                            +.|...+..++.-+-.....+ .-+.+..|.++.++-.+..++...+.++|.++++.+..++
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  112222222222222222233 3578899999999889999999999999988887666544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.59  E-value=0.00072  Score=59.86  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=83.4

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHhhhhhhhc
Q 020792           69 LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFSKAAWWLDLGRLLVGYGMGLLS  145 (321)
Q Consensus        69 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~~~~~  145 (321)
                      +.-..++.-+....+.+|..++.--...+  |+.+-+.+.+--++..+..++.   -+.++.|..++.-+..|+..|..|
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~Y  353 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASY  353 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHH
Confidence            33345677888888888887776543322  4433333322222222222222   235788888888999999999999


Q ss_pred             chhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      ......+.|-.|+++|..+++....+-.+|..++.+++-.+
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.56  E-value=0.0061  Score=53.07  Aligned_cols=136  Identities=14%  Similarity=0.105  Sum_probs=86.2

Q ss_pred             HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhh-----hccchHHHHH-HHHHHHHHH
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-----YIGRRGTMGF-SDIVCIIGW  118 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~~~~~  118 (321)
                      .+.+...|.-.+... .+|.+.+.-|.|.++.+....++.  -..--++|.++.|     |+|||+.-++ +..+.+..+
T Consensus        37 l~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~m  113 (510)
T KOG3574|consen   37 LFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFM  113 (510)
T ss_pred             HHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHH
Confidence            334444555555555 778888888888887765443321  1234567888999     9999985332 223333333


Q ss_pred             HHHHH-----------hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh
Q 020792          119 VIIVF-----------SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       119 ~~~~~-----------~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      .+.+.           .++...+....++.-+..+.-..+.-.+.-.+..+++.|-+......+...|.+++..+-
T Consensus       114 llLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  114 LLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            33332           223333444556666666666667777788888888889999999888888888776544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.46  E-value=0.0013  Score=58.62  Aligned_cols=104  Identities=21%  Similarity=0.265  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---h------hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCcc---chhHHhHHHHHH
Q 020792          105 GTMGFSDIVCIIGWVIIVFSK---A------AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMI  172 (321)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~  172 (321)
                      ++++++.++.++|.++..++.   .      .+.++++..+.++|.|+.=+...++.+|.+++++   |......++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567788888888888754431   2      2578888899999999999999999999998763   366778889999


Q ss_pred             HHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc
Q 020792          173 CIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       173 ~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      ++|..+++.+..++    +|.+.|.+.++..+++++..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            99999999888777    7999999988887777766544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.44  E-value=0.0013  Score=59.80  Aligned_cols=142  Identities=20%  Similarity=0.260  Sum_probs=101.2

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH----------hhhhHHHHHHHHHHhhh
Q 020792           71 LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF----------SKAAWWLDLGRLLVGYG  140 (321)
Q Consensus        71 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~~  140 (321)
                      .++...+.+..+..++..++..+.....-++.-|+++....++.++..+....          .++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            88888999998899999999999988888888899888887777665543221          11222223334555666


Q ss_pred             hhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch------------hhHHHHHHhHHHHHHHHHHhhc
Q 020792          141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------------~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      .+..+-.....++|+.|+..-|+..++.....++|..++..++..+            +-.+..++..+..++.+.+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            6666777788999999999889999999888888888887777655            1223444555555555555556


Q ss_pred             ccCC
Q 020792          209 IPES  212 (321)
Q Consensus       209 ~~e~  212 (321)
                      +|+.
T Consensus       412 Lp~~  415 (433)
T PF03092_consen  412 LPPQ  415 (433)
T ss_pred             cCCC
Confidence            7765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0058  Score=57.18  Aligned_cols=149  Identities=14%  Similarity=0.104  Sum_probs=110.6

Q ss_pred             cccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHhhh----------
Q 020792           58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKA----------  126 (321)
Q Consensus        58 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~----------  126 (321)
                      ....+.++.++++.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..++.++..+...          
T Consensus        57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~  136 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK  136 (571)
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence            3556667888888888777778888888888888999999995 58889999998888877654443111          


Q ss_pred             ---------------hHHHHHHHHHHhhhhhhhcchhhhhhhccCC---Cccc---hhHHhHHHHHHHHHHHHHHHhhcc
Q 020792          127 ---------------AWWLDLGRLLVGYGMGLLSYVVPVYIAEITP---KNLR---GGFTTVHQLMICIGVSMTYLIGAF  185 (321)
Q Consensus       127 ---------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~i~~~  185 (321)
                                     ...+..+.-+..+|.|+.-+...++-+|-++   ++++   .....+++...++|..++..+..+
T Consensus       137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy  216 (571)
T KOG1237|consen  137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY  216 (571)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence                           1245556667778999999999999999998   3333   356777788888888877666655


Q ss_pred             h----hhHHHHHHhHHHHHHHHHHh
Q 020792          186 L----NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       186 ~----~w~~~~~~~~~~~~~~~~~~  206 (321)
                      .    +|.+-|.+..+...++.++.
T Consensus       217 iq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  217 IQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             hhhcccceeeccHHHHHHHHHHHHH
Confidence            4    89988888777666655544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.35  E-value=0.0072  Score=54.48  Aligned_cols=124  Identities=15%  Similarity=0.175  Sum_probs=92.0

Q ss_pred             hhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH---hh-------hhHHHH
Q 020792           62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF---SK-------AAWWLD  131 (321)
Q Consensus        62 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-------~~~~~~  131 (321)
                      ..++. ..|+++..+|..-+...+....+.+...++.+|+|..+.=+++.....++..++..   .+       +...++
T Consensus       282 t~yl~-~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~  360 (432)
T PF06963_consen  282 TAYLK-SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLL  360 (432)
T ss_pred             HHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHH
Confidence            33444 44999999999999999999999999999999999999888887765555443332   11       223333


Q ss_pred             HHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       132 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      .+-.+.=+|.=...-...-++.|..|+++||...+.-+...++...+...+.-.+
T Consensus       361 ~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  361 GGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3334444555566777788999999999999999999988888877766655444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.33  E-value=0.024  Score=52.74  Aligned_cols=119  Identities=17%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHH---HHHHHH-H---Hhhhh-HHHHHHHHH
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI---IGWVII-V---FSKAA-WWLDLGRLL  136 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~-~---~~~~~-~~~~~~~~l  136 (321)
                      +.--+|-+..+.+.+.+++.+|..+|+.+++++.++.-++.. .+...+..   ++..+. .   +.... ..++...++
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334478888899999999999999999999888744333322 11111111   111111 1   11111 122333455


Q ss_pred             HhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc
Q 020792          137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF  185 (321)
Q Consensus       137 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  185 (321)
                      .++..|...|....+..+.... +-+...|-.+....+|+++|.++.++
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~~~~-~~g~~~g~ly~~ntlGa~~G~l~~~~  167 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRIRDQ-HLGHNVATVLAADYLGALVGGLAFPF  167 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc-chhhhhhhhHhHHhHHHHHHHHHHHH
Confidence            6777777777776666554321 12344455555555555555544443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.00081  Score=55.61  Aligned_cols=97  Identities=22%  Similarity=0.167  Sum_probs=74.1

Q ss_pred             ccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 020792           59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG  138 (321)
Q Consensus        59 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  138 (321)
                      +|+.-++-+.+|....+++.+........++.+.+.|-++||-|||+.-+.-++.++++++ .-.++++-.++++|++-|
T Consensus        57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGG  135 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGG  135 (454)
T ss_pred             CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhh
Confidence            4555567788899999998887777777788888899999999999966555555555433 445778888999999999


Q ss_pred             hhhhhhcchhhh-hhhccC
Q 020792          139 YGMGLLSYVVPV-YIAEIT  156 (321)
Q Consensus       139 ~~~~~~~~~~~~-~~~~~~  156 (321)
                      +..+..+...-+ ++.|.-
T Consensus       136 iaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  136 IATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            998888887755 445554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.20  E-value=0.0036  Score=53.72  Aligned_cols=152  Identities=13%  Similarity=0.216  Sum_probs=108.9

Q ss_pred             hhccc-cccCCChhhHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 020792           62 QSGIT-NDLGLSVAEYS-LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        62 ~~~~~-~~~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  139 (321)
                      .|++. .+.+++..+.. -+.-+..-.+.+.-.+.=.+.|..--|+++++-.+.......+.-+.++.+.+-+.-+..|.
T Consensus        28 tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~  107 (433)
T KOG3810|consen   28 TPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGP  107 (433)
T ss_pred             chhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcCh
Confidence            33344 34566666542 22333344455555555579999999999999888888888888899999999899999998


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch------hhHHHHHHhHHHHHHHHHHhhcccCCh
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPESP  213 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~~  213 (321)
                      ..+. ..+.++++-+..+++++-++.+....+.-.|-..+..++..+      ++...=.+......++.+..+++|..+
T Consensus       108 ~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  108 ATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            8654 677889999999999998888888888777777777666555      334444455555555666667888765


Q ss_pred             H
Q 020792          214 R  214 (321)
Q Consensus       214 ~  214 (321)
                      +
T Consensus       187 r  187 (433)
T KOG3810|consen  187 R  187 (433)
T ss_pred             h
Confidence            4

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.20  E-value=0.0074  Score=53.61  Aligned_cols=130  Identities=14%  Similarity=0.059  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccC
Q 020792           77 SLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT  156 (321)
Q Consensus        77 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  156 (321)
                      +.+.-+..+-..+..+.+.++.+|+.-+.=..+..++.+++.++.+++++.+.-+++-++.+++.|........+.+ .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            34555555566677777888999998665566677788889999999999998889999999998887777777644 55


Q ss_pred             CCccchhHHhHHHHHHHHHHHHHHHhhcc---h--hhHHHHHHhHHHHHHHHHHhhc-ccC
Q 020792          157 PKNLRGGFTTVHQLMICIGVSMTYLIGAF---L--NWRILALIGTIPCLVQLIGLCF-IPE  211 (321)
Q Consensus       157 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~---~--~w~~~~~~~~~~~~~~~~~~~~-~~e  211 (321)
                      ++.    ..+.+..|.+.++++|+..-..   .  +-|..+.....+.++..+.+++ +|.
T Consensus       141 ~~~----~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GKS----SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Ccc----ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            543    2344444444444444432211   2  4466677666666555544443 443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.14  E-value=0.01  Score=53.57  Aligned_cols=132  Identities=17%  Similarity=0.230  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHhhhhccch-------HHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHH
Q 020792           75 EYSLFGSILTIGAMIGAIMSGKIADYIGRR-------GTMGFSDIVCIIGWVIIVFS----------KAAWWLDLGRLLV  137 (321)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~  137 (321)
                      ..++..++..+.-++.+|+..++..|.+++       .=+-+++.+.+.+.++....          .+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            346788888899999999999998886554       12455555555555544432          3467888999999


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcc-------h---hhHHHHHHhHHHHHHHHHHh
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF-------L---NWRILALIGTIPCLVQLIGL  206 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-------~---~w~~~~~~~~~~~~~~~~~~  206 (321)
                      ++|.=...|...+++....|++-.+.+++.+......|..++..++..       .   .....|+..+...++..+..
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999888999999999999998888777762       1   34456666666655555443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.95  E-value=0.033  Score=50.44  Aligned_cols=139  Identities=12%  Similarity=0.103  Sum_probs=75.9

Q ss_pred             HHHHHHHhhcccccccchhccccc--cCCChhhHHHHHH---HHHHHHHHHHHhHHHhhhhccchHHHHHHH-HHHHHHH
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITND--LGLSVAEYSLFGS---ILTIGAMIGAIMSGKIADYIGRRGTMGFSD-IVCIIGW  118 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~---~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~-~~~~~~~  118 (321)
                      .+.++..|.-.+......|.+.++  .+.|.+|.+....   .+.+=..-..++=...+.|+|||+.-++-. .+.++..
T Consensus         6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m   85 (544)
T PF13000_consen    6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILM   85 (544)
T ss_pred             HHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHH
Confidence            444555666666554567777777  7888888765421   112111112222233445999998654332 2222222


Q ss_pred             HHHHHhh----------------------h--hHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH
Q 020792          119 VIIVFSK----------------------A--AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI  174 (321)
Q Consensus       119 ~~~~~~~----------------------~--~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  174 (321)
                      +..+..-                      +  ...+....+++-+-.+.-..++-.+.-.+..+++++.+......|.+.
T Consensus        86 ~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~  165 (544)
T PF13000_consen   86 LYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTA  165 (544)
T ss_pred             HHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhh
Confidence            2222111                      0  112233333444444444555556667777888899999998888888


Q ss_pred             HHHHHHHhh
Q 020792          175 GVSMTYLIG  183 (321)
Q Consensus       175 g~~~~~~i~  183 (321)
                      |..++..+-
T Consensus       166 Gyfls~tvF  174 (544)
T PF13000_consen  166 GYFLSFTVF  174 (544)
T ss_pred             hHHHHHHHH
Confidence            887776443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.89  E-value=0.00075  Score=61.09  Aligned_cols=75  Identities=21%  Similarity=0.334  Sum_probs=58.9

Q ss_pred             HHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH-HHHHHHHHHHHH
Q 020792           49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD-IVCIIGWVIIVF  123 (321)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~-~~~~~~~~~~~~  123 (321)
                      +..+...+.+.|.++.+.+++|+++.+.|.+++.--+..+++.|++|+++||+.+|+.++++. +......++..+
T Consensus        21 ~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   21 LFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             eeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence            334445555677778888999999999999999999999999999999999999777666654 445555555544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.37  E-value=0.0054  Score=55.62  Aligned_cols=69  Identities=14%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHH
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL  203 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~  203 (321)
                      ++.|.+.-.......+.-+|...|++++.+.+++.....++..++|++....    |.|+++.+.+...++..
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA  468 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence            3446665555666778889999999999999999999888888888877655    66766665554444333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.34  E-value=0.015  Score=51.89  Aligned_cols=104  Identities=16%  Similarity=0.084  Sum_probs=69.0

Q ss_pred             ccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccch-HHHHHHHHHHHHHHHH-HHHh---hhhHHHHHHHHHHhhh
Q 020792           66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR-GTMGFSDIVCIIGWVI-IVFS---KAAWWLDLGRLLVGYG  140 (321)
Q Consensus        66 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr-~~l~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~G~~  140 (321)
                      ...-|++....|++..+..++..+++.+.|.+.||...- ...++......++... ....   ...+.++..-.+.|++
T Consensus       293 l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~  372 (480)
T KOG2563|consen  293 LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFF  372 (480)
T ss_pred             cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHh
Confidence            344566778899999999999999999999999998743 3444444444444222 1111   2234455556777888


Q ss_pred             hhhhcchhhhhhhcc-CCCccchhHHhHHHH
Q 020792          141 MGLLSYVVPVYIAEI-TPKNLRGGFTTVHQL  170 (321)
Q Consensus       141 ~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~  170 (321)
                      ..+.+|...-+-.|. +|..++ +..|+.+.
T Consensus       373 ~~~~~Pig~ElgvE~TyPv~E~-tSsGll~~  402 (480)
T KOG2563|consen  373 GTGYLPIGFELGVETTYPVAEG-TSSGLLNL  402 (480)
T ss_pred             hcCCCCcceeeeeeeccccCCc-ccceeEEe
Confidence            788889888888886 565554 44444433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.21  E-value=0.18  Score=45.89  Aligned_cols=106  Identities=9%  Similarity=0.166  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccch-HHHHHHHH---HHHHHHHHHHHh---------hhhHHHHHHHHHHhhhhhh
Q 020792           77 SLFGSILTIGAMIGAIMSGKIADYIGRR-GTMGFSDI---VCIIGWVIIVFS---------KAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        77 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr-~~l~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~~~  143 (321)
                      -....+++++-.+|..+..+.. .-++| +.+.+..+   +.....+++...         ++.+..++.-++.|+..|.
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            3556777888888877554321 11222 12222222   233333333322         3556677778999999999


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      ..+....+..+..++++|..+..+...+..+|..+|..++
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888888888888877766543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.18  E-value=0.12  Score=46.93  Aligned_cols=78  Identities=8%  Similarity=-0.007  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-H-------hhhhHHHHHHHHHHhhhhhhhcchhhhhh
Q 020792           81 SILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV-F-------SKAAWWLDLGRLLVGYGMGLLSYVVPVYI  152 (321)
Q Consensus        81 ~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~l~G~~~~~~~~~~~~~~  152 (321)
                      -...+...+..+..-.+..|+..|.=+..++++..+..++.. +       ...++..++.-++.|++.+.......++.
T Consensus        52 ~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla  131 (437)
T TIGR00939        52 LASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLA  131 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhc
Confidence            344444445555555566666643223333332222222211 1       12455666677788888888888777776


Q ss_pred             hccCCCc
Q 020792          153 AEITPKN  159 (321)
Q Consensus       153 ~~~~~~~  159 (321)
                      + .+|++
T Consensus       132 ~-~fp~~  137 (437)
T TIGR00939       132 G-VFPST  137 (437)
T ss_pred             c-cCCHH
Confidence            6 55654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.07  E-value=0.0055  Score=54.70  Aligned_cols=122  Identities=16%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccc-------hHHHHHHHHHHHHH----HHHHHH-hhhhHHHHH
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-------RGTMGFSDIVCIIG----WVIIVF-SKAAWWLDL  132 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-------r~~l~~~~~~~~~~----~~~~~~-~~~~~~~~~  132 (321)
                      ..+-.|.+..+.-++..+...+..+|.+++|.++||+.|       .+.=.+.+.+.+..    .++... ..+...+..
T Consensus       274 ~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~  353 (493)
T KOG1330|consen  274 SYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGL  353 (493)
T ss_pred             HHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHH
Confidence            334445566666778889999999999999999999432       22211111111111    111111 222222333


Q ss_pred             HHHHHhhhhh-hhcchhhhhhhccCCCccchhHHhHHHHHHH-HHHHHHHHhhcch
Q 020792          133 GRLLVGYGMG-LLSYVVPVYIAEITPKNLRGGFTTVHQLMIC-IGVSMTYLIGAFL  186 (321)
Q Consensus       133 ~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~i~~~~  186 (321)
                      ..++.|...- ..+....-+..|..|+++|..+.++...... +|..-+|.+.+.+
T Consensus       354 il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  354 ILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             HHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence            3444443322 2344445677888899999999988776543 4554455344443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.50  E-value=0.0037  Score=58.31  Aligned_cols=76  Identities=22%  Similarity=0.355  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhcccccccchh-ccccccCCChhhHHHHHHHHHH-HHHHHHHhHHHhhhhcc--chHHHHHHHHHHHHH
Q 020792           42 FVAVCGSYVFGSAIGYSSPAQS-GITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIG  117 (321)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~  117 (321)
                      ++..++..........+..+.| +++.+|++++++++++.++..+ +.++|.+++|++..|+.  .|..+.+..+...++
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~  387 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS  387 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence            3334444444444444445555 6788999999999988766655 67788899999999885  445554444444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.35  E-value=0.046  Score=52.32  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=45.1

Q ss_pred             ccccccCCChhhHHHHHHHHHH-HHHHHHHhHHHhhhhcc--chHHHHHHHHHHHHHHHH
Q 020792           64 GITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIGWVI  120 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~  120 (321)
                      ++++.+|+++.+++++.++..+ +.+++.+++|+++||++  .|+.+.+++++..++.++
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            5667899999999999888776 67899999999999998  456666666666665443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.97  E-value=0.87  Score=40.58  Aligned_cols=34  Identities=6%  Similarity=-0.089  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCcc
Q 020792          126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL  160 (321)
Q Consensus       126 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  160 (321)
                      .++..++.-.+.+++.|..+.......+++ |+|.
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y  149 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY  149 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence            345566667777888877777777766655 4443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.24  E-value=0.82  Score=40.73  Aligned_cols=107  Identities=11%  Similarity=0.170  Sum_probs=71.2

Q ss_pred             hhHHHHHHH-HHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhhhh
Q 020792           74 AEYSLFGSI-LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---------FSKAAWWLDLGRLLVGYGMGL  143 (321)
Q Consensus        74 ~~~~~~~~~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~G~~~~~  143 (321)
                      .-.-++..+ +++.-.+|.+...++-++=  +|.+.+..++=.+..-++.         +-.+.+++++...+.|+..|-
T Consensus       282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~~--~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  282 WYALLLVFLSFNVFDLIGSILAALLTWPD--PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhHHHHHHHHhHHHHHhhhhhhhcccCCC--CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            334455566 8888899977777765433  3333333333222222222         245667788889999999999


Q ss_pred             hcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHh
Q 020792          144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI  182 (321)
Q Consensus       144 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i  182 (321)
                      ...+...+..+-.|++++-.+..+.......|...|..+
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999988777777776666666555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.21  E-value=1.1  Score=40.27  Aligned_cols=97  Identities=12%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhh
Q 020792           75 EYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFS--DIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI  152 (321)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~  152 (321)
                      --|.+-.+..+.++++.+..|++..++.+-.-+.++  .++.+.+.++++..+|.|...++.++.+.......+.+..-+
T Consensus       286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI  365 (412)
T PF01770_consen  286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQI  365 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347788888888899999999998888775544444  444555667788889999999998888877777777777666


Q ss_pred             hccCCCccchhHHhHHHHH
Q 020792          153 AEITPKNLRGGFTTVHQLM  171 (321)
Q Consensus       153 ~~~~~~~~r~~~~~~~~~~  171 (321)
                      +.....+.-+...|+....
T Consensus       366 A~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  366 AKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHhccccceeeeeeeHHHH
Confidence            6666654336666655443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.32  E-value=0.93  Score=39.10  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccC
Q 020792           83 LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT  156 (321)
Q Consensus        83 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  156 (321)
                      ..+..+..+++.+.+..++|-|+++.++......... .-+-+.+..++-+..+.|++.+..+..--+|++++-
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            3444556666677899999999999887766554322 122355677888889999999988888777776654

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=91.56  E-value=0.054  Score=46.91  Aligned_cols=105  Identities=16%  Similarity=0.201  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHH--HHHHHHHHHHH----------HhhhhHHHHHHHHHHhhhhhhhc
Q 020792           79 FGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSD--IVCIIGWVIIV----------FSKAAWWLDLGRLLVGYGMGLLS  145 (321)
Q Consensus        79 ~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~l~G~~~~~~~  145 (321)
                      ....++++-.+|..+.++.-=+ -.+|++...+.  ++.....+++.          +.++.+..++.-++.|+..|...
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4567888888888877764211 12444433221  22222222221          22355667777889999999999


Q ss_pred             chhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh
Q 020792          146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG  183 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  183 (321)
                      +....+..+..++++|..+..+......+|-.+|..++
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             HHHH----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887777777777766665544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=88.21  E-value=13  Score=32.76  Aligned_cols=142  Identities=15%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH----H
Q 020792           33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM----G  108 (321)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l----~  108 (321)
                      +++.....++++..+...+-+.......+   +   .|-+..|.+.+.+.+.....+|+...-++.|---.-+.+    +
T Consensus         8 ~~alL~laVf~~aa~GlvyElal~tLaty---L---lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vEll   81 (508)
T COG4262           8 WRALLLLAVFVCAACGLVYELALGTLATY---L---LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELL   81 (508)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---h---cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHH
Confidence            33444444444445555554443222221   1   455667889999999999999998887776643332222    2


Q ss_pred             HHHHHHHHHHHHH-HH----hhhhHHHHHHHHHHhhhhhhhcchhhhhhhc-cCCCccc-hhHHhHHHHHHHHHHHHHH
Q 020792          109 FSDIVCIIGWVII-VF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAE-ITPKNLR-GGFTTVHQLMICIGVSMTY  180 (321)
Q Consensus       109 ~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~-~~~~~~r-~~~~~~~~~~~~~g~~~~~  180 (321)
                      +|++..+-...+. .|    .++-+.+.++.++.|.-.|...|..+.++.. ....+.- .+....-+.+...|+..-|
T Consensus        82 lgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~r~a~~k~~~s~vl~~DYLGal~~gLl~p  160 (508)
T COG4262          82 LGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQRRQAKAKDLGSRVLTLDYLGALAGGLLWP  160 (508)
T ss_pred             HHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhhhhhhHhhhhhhHHHHHH
Confidence            2222211111111 22    2455778888899998889988988887766 2222221 2333334445444544444

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=87.75  E-value=0.6  Score=38.85  Aligned_cols=51  Identities=16%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             ccchhHHhHHHHHHHHHHHHH--HHhhc-c----h--hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          159 NLRGGFTTVHQLMICIGVSMT--YLIGA-F----L--NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       159 ~~r~~~~~~~~~~~~~g~~~~--~~i~~-~----~--~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      |+|+..+.+...+.++|.++.  |++.. -    .  +|++++.+.+.+.++-++.+..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456777777778888887654  43333 1    1  79999998888887777766544

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.03  E-value=3.8  Score=28.82  Aligned_cols=32  Identities=16%  Similarity=-0.065  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHH
Q 020792           78 LFGSILTIGAMIGAIMSGKIADYI-GRRGTMGF  109 (321)
Q Consensus        78 ~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~  109 (321)
                      +-.+.-+++..+.....|||.||| |.++..++
T Consensus        46 ~klssefIsGilVGa~iG~llD~~agTsPwglI   78 (116)
T COG5336          46 FKLSSEFISGILVGAGIGWLLDKFAGTSPWGLI   78 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            344556667777778889999987 55554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=85.46  E-value=9.4  Score=35.26  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccch--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhc
Q 020792           77 SLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAE  154 (321)
Q Consensus        77 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  154 (321)
                      |..-.+..+..++..+..|++-.++.+-  ..+.+..++.+...++++..+|.|...++.++.+.......+++..-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777788889999997777553  33444445555566778889999999999999999888888888888888


Q ss_pred             cCCCccchhHHhHHHHHH
Q 020792          155 ITPKNLRGGFTTVHQLMI  172 (321)
Q Consensus       155 ~~~~~~r~~~~~~~~~~~  172 (321)
                      ....+.-|...|+.+...
T Consensus       381 ~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       381 SLSKELCALVFGINTFVA  398 (511)
T ss_pred             HhcccceEEEEecHHHHH
Confidence            887665588888776553

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=83.82  E-value=9.2  Score=27.57  Aligned_cols=43  Identities=21%  Similarity=0.536  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHH
Q 020792           75 EYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG  117 (321)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  117 (321)
                      ..+.......++..++..+.+.+.|..|.+..+.+......++
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            3556677777888888888888888888777666555444443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.55  E-value=0.85  Score=43.83  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhhcccccccchh-ccccccCCChhhHHHHHHHH-HHHHHHHHHhHHHhhhhcc--chHHHHHHHHHHHHHH
Q 020792           43 VAVCGSYVFGSAIGYSSPAQS-GITNDLGLSVAEYSLFGSIL-TIGAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIGW  118 (321)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~-~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~  118 (321)
                      +..++..+.......+..++| +++.+||.+.+.+..+++.. .-+.++|.+++|++..|+-  .|....+.++...++.
T Consensus       396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l  475 (735)
T KOG3626|consen  396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL  475 (735)
T ss_pred             HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence            333444444444444445555 67888999999999887544 4556678888999999774  5555555555444444


Q ss_pred             HH
Q 020792          119 VI  120 (321)
Q Consensus       119 ~~  120 (321)
                      +.
T Consensus       476 ~~  477 (735)
T KOG3626|consen  476 LF  477 (735)
T ss_pred             HH
Confidence            33

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=81.72  E-value=5.8  Score=34.18  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             cccCCChh-hHHHHHHHHHHHHHHHHHhHHHhhhhccchH---HHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 020792           67 NDLGLSVA-EYSLFGSILTIGAMIGAIMSGKIADYIGRRG---TMGF---SDIVCIIGWVIIVFSKAAWWLDLGRLLVGY  139 (321)
Q Consensus        67 ~~~~~s~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~---~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  139 (321)
                      +.+..+.+ |.-|....+.+|..+..-     +-|+=+-+   .+.+   -.++..+.-.+..+.++++..++.-+.-|+
T Consensus       280 ~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL  354 (409)
T KOG3880|consen  280 HGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL  354 (409)
T ss_pred             cCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            33444433 467888888777554422     22222222   1111   122233333455668899988888899998


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL  186 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  186 (321)
                      -.|..|....--+.+-.++++|-.+++....+-.+|..++..++-.+
T Consensus       355 lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  355 LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            88888888887788878888999999999999889988887776443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=80.76  E-value=24  Score=29.98  Aligned_cols=130  Identities=14%  Similarity=0.093  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhccch--HHHHHHHHHHHHHHHHHHH----hh---hhHHHHHHHHHHhhhhhhhcc
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGFSDIVCIIGWVIIVF----SK---AAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      -|.+.+.++++.++|+-+..++..|-..|  ..+.+..++.++...+...    ++   +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            47788888899999998888888776655  3444444443333322222    11   112224444555566778899


Q ss_pred             hhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhh----cchhhHHHHHHhHHHHHHHHHH
Q 020792          147 VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AFLNWRILALIGTIPCLVQLIG  205 (321)
Q Consensus       147 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~~~w~~~~~~~~~~~~~~~~~  205 (321)
                      ...-+-++..|.+.|.+.+.++..-.++-.-++-..-    --.+-|..|-++.+...++.+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            9999999999999998888777655443332221110    1115667777777666655444

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=80.73  E-value=33  Score=28.84  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhh-hccchHHHH----HHHHHHHHHHHHHHH-h----hhhHHHHHHHHHHhhhhhhhc
Q 020792           76 YSLFGSILTIGAMIGAIMSGKIAD-YIGRRGTMG----FSDIVCIIGWVIIVF-S----KAAWWLDLGRLLVGYGMGLLS  145 (321)
Q Consensus        76 ~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~----~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~G~~~~~~~  145 (321)
                      ......++..|..+|.+..|.... ++-||+.+.    .+.+..++..++.+. .    .+...+.+..++.|++.=+.+
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            345566677777777777787776 344555443    233444444433212 1    134567777788887655555


Q ss_pred             chhhhhhhccCCCccchhHHhHHHHHHHHHH
Q 020792          146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGV  176 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  176 (321)
                      ++....-.|. +...+-+..-.+...+++|-
T Consensus       223 ~ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY  252 (267)
T PF07672_consen  223 GVILNLPHEY-KGYNPKKIGIQFGLIWGFGY  252 (267)
T ss_pred             HHHhcChhhh-cCCCcceehhHHHHHHHHHH
Confidence            5554444443 22223333444444555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	321
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-14

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 122/298 (40%), Gaps = 66/298 (22%)
Query: 41  TFVAVCGSYVFGSAIGYSSPAQSGITNDLGL---------SVAEYSLFGSILT---IGAM 88
           T VA  G  +FG    Y +   SG    L             A  SL G  +    IG +
Sbjct: 14  TLVATLGGLLFG----YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCI 69
Query: 89  IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG--------------- 133
           IG  + G  ++  GRR ++  + ++  I  V       + W +LG               
Sbjct: 70  IGGALGGYCSNRFGRRDSLKIAAVLFFISGV------GSAWPELGFTSINPDNTVPVYLA 123
Query: 134 ---------RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184
                    R++ G G+GL S + P+YIAE+ P ++RG   + +Q  I  G  + Y +  
Sbjct: 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183
Query: 185 FL------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRL 232
           F+             WR +     IP L+ L+ L  +PESPRWL   GK  ++E  L+++
Sbjct: 184 FIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243
Query: 233 RGXXXXXXXXXXXXXXYTETLER-LSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN 289
            G                 +L+     GG L +F       +++GV L + QQF G+N
Sbjct: 244 MGNTLATQAVQEI----KHSLDHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGIN 294
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
2cfq_A	417	Lactose permease; transport, transport mechanism,	2e-04

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 13/149 (8%), Positives = 43/149 (28%), Gaps = 9/149 (6%)

Query: 67  NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA 126
                    +    ++  +        +  I + IG +  +  +  +  +  +   F+ +
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS 311

Query: 127 AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRG-GFTTVHQLMICIGVSMTYLIGAF 185
           A  + + + L  + +  L      YI            +         + +    ++   
Sbjct: 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371

Query: 186 L--------NWRILALIGTIPCLVQLIGL 206
           +         + +L L+     L+ +  L
Sbjct: 372 MYESIGFQGAYLVLGLVALGFTLISVFTL 400

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.86
2xut_A	524	Proton/peptide symporter family protein; transport	99.79
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.65
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.6
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.44
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.41
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.16
2xut_A	524	Proton/peptide symporter family protein; transport	98.9

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=3.7e-30  Score=235.29  Aligned_cols=269  Identities=27%  Similarity=0.453  Sum_probs=212.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccchhccccccCC--------ChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchH
Q 020792           34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGL--------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG  105 (321)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~  105 (321)
                      .+..+.+.++++++.+.++++.++++..+|.+.++++.        +..+.|++.+.+.+|.++|++++|+++||+|||+
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            35566677777888999999999999888888776643        2345789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhH
Q 020792          106 TMGFSDIVCIIGWVIIV------------------FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV  167 (321)
Q Consensus       106 ~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  167 (321)
                      +++++.+++.++.++++                  +++|++.++++|+++|++.|...+..+.+++|+.|+++|++..++
T Consensus        87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~  166 (491)
T 4gc0_A           87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence            99999999999999988                  478999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcch------------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHhCC
Q 020792          168 HQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA  235 (321)
Q Consensus       168 ~~~~~~~g~~~~~~i~~~~------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  235 (321)
                      .+.+..+|..+++.++...            .||..+.+..+..++.++..+++||+|+|+..+++.+++.+.+++...+
T Consensus       167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            9999999988887776432            5888888888888888888888999999999999999999888876544


Q ss_pred             CcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhcCCCCch
Q 020792          236 DADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSI  308 (321)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  308 (321)
                      +...++..+..+...++   ++.......   ...++..+......+++..+.+.+.+|.|.+.+..+.+...
T Consensus       247 ~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (491)
T 4gc0_A          247 TLATQAVQEIKHSLDHG---RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI  313 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred             chhHHHHHHHHHHHHhh---hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc
Confidence            32222221111111111   111111111   22344556667777778888899999999999888876653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=6.2e-27  Score=211.37  Aligned_cols=265  Identities=11%  Similarity=0.038  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHH
Q 020792           35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC  114 (321)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  114 (321)
                      +..+..+....+..+..+.......+.+|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            34455566666667777777777788899999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH----hhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----
Q 020792          115 IIGWVIIVF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----  186 (321)
Q Consensus       115 ~~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----  186 (321)
                      +++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+    
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  182 (451)
T 1pw4_A          103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  182 (451)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999    999999999999999999999999999999999999999999999999999999999888764    


Q ss_pred             h-hHHHHHHhHHHHHHHHHHh-hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhh
Q 020792          187 N-WRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL  264 (321)
Q Consensus       187 ~-w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (321)
                      + ||+.|++.+++.++..+.. +++||+|+....+..++.           .++.+++.   ++..+++...++...++.
T Consensus       183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDY---NEKAEQELTAKQIFMQYV  248 (451)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cccccccc---hhhhhcccccccchHHHH
Confidence            7 9999999888777655544 567887653211111000           00000000   000000111111113445


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc-CCCCchHHHHHHHHHH
Q 020792          265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGSIGMIAMVVIQV  318 (321)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i  318 (321)
                      ++++..+...+    ..+......+.+..+.|.++++. |+++...+...++..+
T Consensus       249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  299 (451)
T 1pw4_A          249 LPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY  299 (451)
T ss_dssp             SSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred             HcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            55544433333    33333334667888999999884 9998866665555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=2.4e-26  Score=206.82  Aligned_cols=238  Identities=11%  Similarity=0.066  Sum_probs=182.8

Q ss_pred             HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH---
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---  121 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---  121 (321)
                      .+..+..++......+..|.+.+++|++..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.+++   
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  111 (438)
T 3o7q_A           32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA  111 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence            33344444555566778888999999999999999999999999999999999999999999999999999999998   


Q ss_pred             HHhhhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcchh--------------
Q 020792          122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN--------------  187 (321)
Q Consensus       122 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~--------------  187 (321)
                      +++++++.++++|++.|++.+...+...++++|++|+++|+++.++.+.+..+|..++|.+++.+.              
T Consensus       112 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  191 (438)
T 3o7q_A          112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDK  191 (438)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            888999999999999999999999999999999999999999999999999999999999887662              


Q ss_pred             ----------------hHHHHHHhHHHHHHHHHHhhc--ccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 020792          188 ----------------WRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREY  249 (321)
Q Consensus       188 ----------------w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (321)
                                      ||+.|++.+++.++..+..++  .||+++.   +.++             +             
T Consensus       192 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~-------------~-------------  242 (438)
T 3o7q_A          192 MSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD-------------A-------------  242 (438)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-------------S-------------
T ss_pred             CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-------------c-------------
Confidence                            999998877766655554433  3554321   0000             0             


Q ss_pred             HHHHhcccccchhhhhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHH-Hhhc-CCCCchHHHHHHHHHH
Q 020792          250 TETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI-FISA-GFSGSIGMIAMVVIQV  318 (321)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~i  318 (321)
                         ++.....+++++++++..+...+..++...    ....+..|.|.| +++. |+++..++...++..+
T Consensus       243 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  306 (438)
T 3o7q_A          243 ---KQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_dssp             ---STTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             ---cccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence               000111234566676665554444333333    345677888888 8887 9998876666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=1.6e-24  Score=191.19  Aligned_cols=234  Identities=15%  Similarity=0.149  Sum_probs=183.2

Q ss_pred             HHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHh
Q 020792           45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS  124 (321)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  124 (321)
                      ++..+..........+..|.+.+++|.+..+.+++.+...++..++++++|+++||+|||+++.++.++.+++.++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   85 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT   85 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh
Confidence            34444455555556778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHH
Q 020792          125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL  200 (321)
Q Consensus       125 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~  200 (321)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|+++.+..+.+..+|..++|.+++.+    +||+.|++.+++.+
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  165 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCA  165 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888765    89999998888877


Q ss_pred             HHHHH-hhcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHHHH
Q 020792          201 VQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL  279 (321)
Q Consensus       201 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (321)
                      +..+. .+++||+++..   ++                                +++...++++.+|++..+...+..++
T Consensus       166 ~~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (375)
T 2gfp_A          166 GVTFSMARWMPETRPVD---AP--------------------------------RTRLLTSYKTLFGNSGFNCYLLMLIG  210 (375)
T ss_dssp             HHHCCCCCSSCCCSTTT---CC--------------------------------CCCTTTCSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcccCCCC---cc--------------------------------cccHHHHHHHHhcCcchHHHHHHHHH
Confidence            76663 35567764310   00                                01122345566666655444433333


Q ss_pred             HHHHHhhChhhHHHcHHHHHhh-cCCCCchHHHHHHHHH
Q 020792          280 MVLQQFGGVNGIAFYASSIFIS-AGFSGSIGMIAMVVIQ  317 (321)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~  317 (321)
                      ..    .....+..+.|.++++ .|.++...+...++..
T Consensus       211 ~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~  245 (375)
T 2gfp_A          211 GL----AGIAAFEACSGVLMGAVLGLSSMTVSILFILPI  245 (375)
T ss_dssp             HH----HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHH
T ss_pred             HH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            22    2355677777888777 4887776655554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.86  E-value=1.3e-20  Score=172.00  Aligned_cols=140  Identities=18%  Similarity=0.239  Sum_probs=128.4

Q ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 020792           68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY  146 (321)
Q Consensus        68 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  146 (321)
                      ++|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+
T Consensus        48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  127 (491)
T 4aps_A           48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP  127 (491)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence            399999999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCcc--chhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792          147 VVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       147 ~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      ...++++|++|+++  |+.+.+.++.+..+|..++|.+++.+    +||+.|++.++..++..+..+
T Consensus       128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988  67788889999999999999888775    899999998777666655543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.79  E-value=3.4e-18  Score=157.31  Aligned_cols=146  Identities=16%  Similarity=0.159  Sum_probs=131.4

Q ss_pred             hccccccC------CChhhHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 020792           63 SGITNDLG------LSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGR  134 (321)
Q Consensus        63 ~~~~~~~~------~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~  134 (321)
                      +++.+++|      ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL  116 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34777888      9999999999999999999999999999999 999999999999999999999998 999999999


Q ss_pred             HHHhhhhhhhcchhhhhhhccCCCccchhHHhH---HHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh
Q 020792          135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV---HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       135 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      ++.|++.+...+...+++.|++|+++|+++.+.   .+.+..+|..++|.+++.+    +|++.|++.+++.++..+..+
T Consensus       117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876666   8888999999999888765    899999988877766655544


Q ss_pred             c
Q 020792          208 F  208 (321)
Q Consensus       208 ~  208 (321)
                      +
T Consensus       197 ~  197 (524)
T 2xut_A          197 L  197 (524)
T ss_dssp             S
T ss_pred             H
Confidence            3

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.65  E-value=1.1e-17  Score=149.63  Aligned_cols=149  Identities=13%  Similarity=0.153  Sum_probs=102.6

Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHH---HHHHhhhh-HHHHHHHHHHhh
Q 020792           64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV---IIVFSKAA-WWLDLGRLLVGY  139 (321)
Q Consensus        64 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~G~  139 (321)
                      ++++++|++..+.|++.+...++..++++++|+++||+|||++++++.++.+++..   ...+.+.. ..+...+.+.|+
T Consensus        33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T 2cfq_A           33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36777999999999999999999999999999999999999999988877654321   11222211 123445666666


Q ss_pred             hhhhhcchhhhhhhccCCC--ccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhhcccCC
Q 020792          140 GMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPES  212 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~~~~e~  212 (321)
                      +.+..++.....+.++.++  ++|+...+....+..+|..++|.+++++   +|++.|++.++..++..+..++.+|+
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  190 (417)
T 2cfq_A          113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD  190 (417)
T ss_dssp             STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcc
Confidence            6655555555555555443  3446666777666777777888777665   79999988776655555444444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.60  E-value=1.2e-14  Score=130.84  Aligned_cols=145  Identities=14%  Similarity=0.186  Sum_probs=123.6

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhc--cchHHHHHHHHHHH-HHHHHHHHh--hhhHHHHHHHHHHhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMGFSDIVCI-IGWVIIVFS--KAAWWLDLGRLLVGY  139 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G~  139 (321)
                      +++.+|.+..+.+++.++..++..++.++.|++.||+  |||+.+.++.++.. ++.++..+.  .+.+.+.+..++.|+
T Consensus       279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  358 (451)
T 1pw4_A          279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  358 (451)
T ss_dssp             BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence            4555899999999999999999999999999999999  99999888877766 666665555  367777788888999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH-HHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhcc
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI  209 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~~  209 (321)
                      +.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+    +|+..|++.+++.++..+..+++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999 999999888765    78999998888877776665544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.51  E-value=2.6e-13  Score=123.56  Aligned_cols=152  Identities=14%  Similarity=0.078  Sum_probs=110.5

Q ss_pred             cchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHH-
Q 020792           60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK----AAWWLDLGR-  134 (321)
Q Consensus        60 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~-  134 (321)
                      .+.+.+.+..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+...    +.+..++.. 
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  377 (491)
T 4gc0_A          298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML  377 (491)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            345567777888888888888888899999999999999999999999999888888776655421    112222222 


Q ss_pred             -HHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----------hhHHHHHHhHHHHHHHH
Q 020792          135 -LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQL  203 (321)
Q Consensus       135 -~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------~w~~~~~~~~~~~~~~~  203 (321)
                       +..+++ ....+..+.+.+|.+|++.|+++.++......+|..+++.+...+          ++.+.|++.++++++..
T Consensus       378 ~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~  456 (491)
T 4gc0_A          378 FYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA  456 (491)
T ss_dssp             HHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence             222222 233466778999999999999999999988888887776554332          34456777777777766


Q ss_pred             HHh-hcccCC
Q 020792          204 IGL-CFIPES  212 (321)
Q Consensus       204 ~~~-~~~~e~  212 (321)
                      +.. +++||+
T Consensus       457 i~~~~~~PET  466 (491)
T 4gc0_A          457 LFMWKFVPET  466 (491)
T ss_dssp             HHHHHHCCCC
T ss_pred             HHHHheecCC
Confidence            654 678999

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=1e-13  Score=123.85  Aligned_cols=142  Identities=8%  Similarity=0.037  Sum_probs=114.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcchhhhh
Q 020792           72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVY  151 (321)
Q Consensus        72 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  151 (321)
                      +....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556788888888999999999999999999999998888888877777777777777777777787776666777889


Q ss_pred             hhccCCCccchhHHhH-HHHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhh-cccCCh
Q 020792          152 IAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC-FIPESP  213 (321)
Q Consensus       152 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~-~~~e~~  213 (321)
                      +.|.+|++.|+++.+. ++....+|..++|.+++.+    +++..|.+.+++.++..+..+ +.||++
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999998888 4777888888888888765    677888888877777666543 456553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.44  E-value=3.5e-13  Score=120.74  Aligned_cols=141  Identities=12%  Similarity=0.023  Sum_probs=114.1

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      +++.+|.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.++..+.++.+.+.. -++.|++.+..
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~  364 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQ  364 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTH
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHH
Confidence            45566999999999999999999999999999999999999999999999998888888877765444 48888998989


Q ss_pred             cchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----h-hHHHHHHhHHHHHHHHHHhhc
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      ++...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+    + ++..|++.+++.++..+..++
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999976 777777766 4458888888877765    5 777777765555444443333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.41  E-value=1e-12  Score=119.64  Aligned_cols=145  Identities=14%  Similarity=0.107  Sum_probs=116.0

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHH-----HHHHHHHHHHHHHHHhh---------hhHHH
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-----FSDIVCIIGWVIIVFSK---------AAWWL  130 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~  130 (321)
                      ..+.++.+..+.++..+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..         +.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4aps_A          310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL  389 (491)
T ss_dssp             HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred             HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence            45556766677788888899999999999999999999987655     67777777766655533         66777


Q ss_pred             HHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHHHHHHHhh
Q 020792          131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLC  207 (321)
Q Consensus       131 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~~~  207 (321)
                      .+..++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+   ++...|.+.+++.++..+..+
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            78888999999998999999999999999999999999999999999999998877   566777777777666665554


Q ss_pred             cc
Q 020792          208 FI  209 (321)
Q Consensus       208 ~~  209 (321)
                      ++
T Consensus       470 ~~  471 (491)
T 4aps_A          470 FL  471 (491)
T ss_dssp             HC
T ss_pred             HH
Confidence            33

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.16  E-value=2.2e-11  Score=106.83  Aligned_cols=127  Identities=22%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH-HHHHHH--HHHH--hhhhHHHHHHHHHHhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV-CIIGWV--IIVF--SKAAWWLDLGRLLVGY  139 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~G~  139 (321)
                      +++.+|.+..+.+++.+...++..++.++.+++.||+|++.  ..+... ...+..  ....  .++.+.+.+..++.|+
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  303 (375)
T 2gfp_A          226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF  303 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence            44458999999999999999999999999999999999833  233222 222222  2222  2466777788889999


Q ss_pred             hhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch----hhHHHHHH
Q 020792          140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI  194 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~  194 (321)
                      +.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+    +|+..+++
T Consensus       304 ~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          304 GAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            999999999999999998 7899999999999999999888888776    45444444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.90  E-value=2.7e-09  Score=97.77  Aligned_cols=134  Identities=14%  Similarity=0.208  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHhh----hhccc----hHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHH
Q 020792           75 EYSLFGSILTIGAMIGAIMSGKIA----DYIGR----RGTMGFSDIVCIIGWVIIVFS---------KAAWWLDLGRLLV  137 (321)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~  137 (321)
                      ..+.+.....++..++.++.+++.    ||.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666677777777777664    55543    356677777777777766653         3566777888999


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch------hh---------HHHHHHhHHHHHHH
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NW---------RILALIGTIPCLVQ  202 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w---------~~~~~~~~~~~~~~  202 (321)
                      |++.+...+....++.|..|+++|++++++.+....+|..++|.+.+.+      +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888765      24         33366666666665


Q ss_pred             HHHhhc
Q 020792          203 LIGLCF  208 (321)
Q Consensus       203 ~~~~~~  208 (321)
                      .+..++
T Consensus       496 ~~~~~~  501 (524)
T 2xut_A          496 AIVFAL  501 (524)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-10
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 14/192 (7%)

Query: 37  VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
           + L  F      Y+       + P       + G S  +     S ++I       + G 
Sbjct: 26  IFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 97  IADYIGRRGTMGFSDIVCIIGWVIIVFSKAA----WWLDLGRLLVGYGMGLLSYVVPVYI 152
           ++D    R  +    I+     + + F   A      + +   L G+  G+        +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 153 AEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------LNWRILALIGTIPCLVQLIGL 206
                +  RGG  +V      +G  +  L+              L +      LV L   
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 207 CFIPESPRWLAK 218
             + ++P+    
Sbjct: 202 AMMRDTPQSCGL 213

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 16/177 (9%), Positives = 54/177 (30%), Gaps = 10/177 (5%)

Query: 65  ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
           + +   +S ++  +  + +++ +++   + G ++D +G R  + +     ++ +      
Sbjct: 34  LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93

Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITP----------KNLRGGFTTVHQLMICI 174
                L    L+     G+         A                  G       +   +
Sbjct: 94  IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153

Query: 175 GVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQR 231
           G S+  ++    N  +  L      ++ ++      ++P           + +A   
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.65
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.61
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.5

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.4e-27  Score=210.24  Aligned_cols=265  Identities=11%  Similarity=0.050  Sum_probs=182.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccchhccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHH
Q 020792           34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV  113 (321)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  113 (321)
                      ++..|..+..+.++.+..+.+...++...|.++ ++|+|.++.|++.+++.+++.++++++|+++||+|||+++.++.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            344566666666666666666566666777676 5899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----hhhHHHHHHHHHHhhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHHHHHHHHHhhcch---
Q 020792          114 CIIGWVIIVFS----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---  186 (321)
Q Consensus       114 ~~~~~~~~~~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---  186 (321)
                      .+++.+++++.    ++++.+++.|++.|++.+..++....++.|++|+++|++++++.+.+..+|..+++.++...   
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            99998888765    47789999999999999999999999999999999999999999999999988888776543   


Q ss_pred             --hhHHHHHHhHHHHHHHHHHh-hcccCChHHHHhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhcccccchhh
Q 020792          187 --NWRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE  263 (321)
Q Consensus       187 --~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (321)
                        +||+.+++.+.+.++..+.. ++.+++|+.......++.           +.+..+   +..+..+++...++...+.
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~  244 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPD---DYNEKAEQELTAKQIFMQY  244 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHH
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------hhhccc---chhhccccccchhhHHHHH
Confidence              79999888887766655554 445555432111111000           000000   0001111111122223344


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhChhhHHHcHHHHHhhc-CCCCchHHHHHHHHH
Q 020792          264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGSIGMIAMVVIQ  317 (321)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~  317 (321)
                      .++++..+..    ....+......+....+.|.++.+. +.+........++..
T Consensus       245 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (447)
T d1pw4a_         245 VLPNKLLWYI----AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE  295 (447)
T ss_dssp             TSSCHHHHHH----HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred             HHcCchHHHH----HHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcch
Confidence            4444433332    2222333334567788889888876 888776655554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.3e-16  Score=137.07  Aligned_cols=155  Identities=11%  Similarity=0.091  Sum_probs=107.0

Q ss_pred             ccchh-ccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHH----HHHH
Q 020792           59 SPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWW----LDLG  133 (321)
Q Consensus        59 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~  133 (321)
                      .+.+| ++.+++|+|.++.|++.++..++..++++++|+++||+|||++++++..+..++..+..+..+...    .++.
T Consensus        27 ~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (417)
T d1pv7a_          27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG  106 (417)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            44555 467789999999999999999999999999999999999999999999988888888777655443    3445


Q ss_pred             HHHHhhhhhhhcchhhhhhhccCCCc--cchhHHhHHHHHHHHHHHHHHHhhcch---hhHHHHHHhHHHHH-HHHHHhh
Q 020792          134 RLLVGYGMGLLSYVVPVYIAEITPKN--LRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCL-VQLIGLC  207 (321)
Q Consensus       134 ~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~-~~~~~~~  207 (321)
                      +.+.+.+.+...........+..+++  ++....+........+..+++.+++.+   +|+..+........ +..+..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  186 (417)
T d1pv7a_         107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             HHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHH
Confidence            55555555554444444444433322  235566666777777777777777665   55555555444444 4444445


Q ss_pred             cccCCh
Q 020792          208 FIPESP  213 (321)
Q Consensus       208 ~~~e~~  213 (321)
                      ..++++
T Consensus       187 ~~~~~~  192 (417)
T d1pv7a_         187 AKTDAP  192 (417)
T ss_dssp             SCCCSC
T ss_pred             Hhcccc
Confidence            566654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.7e-16  Score=133.05  Aligned_cols=148  Identities=8%  Similarity=0.016  Sum_probs=126.1

Q ss_pred             cccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 020792           65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL  144 (321)
Q Consensus        65 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  144 (321)
                      ..++.+.+....+.......++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+.+..++.|++.+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence            44455566777888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhccCCCccchhHHhHH-HHHHHHHHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHh-hcccCC
Q 020792          145 SYVVPVYIAEITPKNLRGGFTTVH-QLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES  212 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e~  212 (321)
                      .+....++.|.+|+++|+++.+.. +....+|..++|.+.+++    |++..|++.+++.++..++. ++++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999875 556778888888777665    89999998888777666655 444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.4e-13  Score=121.17  Aligned_cols=146  Identities=11%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             hccccccCCChhhHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH---H--hhhhHHHHHHHHHH
Q 020792           63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---F--SKAAWWLDLGRLLV  137 (321)
Q Consensus        63 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~l~  137 (321)
                      .++.+.++.+..+.++..+...++..++.++.|+++||++||+..........+......   .  ..+.+...++.++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (447)
T d1pw4a_         274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  353 (447)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            357778899999999999999999999999999999999987654444333332222221   1  35667777778888


Q ss_pred             hhhhhhhcchhhhhhhccCCCccchhHHhHHHHHHHH-HHHHHHHhhcch----hhHHHHHHhHHHHHHHHHHhhc
Q 020792          138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF  208 (321)
Q Consensus       138 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~~~  208 (321)
                      |++.+...+....+..|.+|++.|+++.++.+....+ |.+++|.+.+.+    ||+..+++.+...++..++..+
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            9888888888899999999999999999998877665 556677776654    8998888877776666555543