Citrus Sinensis ID: 020815

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARMH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccHHcccHHHHHHHHcccccccccccEEEEcHHHHHHHHHHHHHHccccEEEccccccEEEEEccEEEEEEEccEEEEEcccccccccccEEEEcEEEEcccccccccccEEEccccccccccccccccccHHHHHHHHHHcccEEEccEEEEcccHHHcccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEccEHHHHHHHHHHHHccccEEEEEEEcccccccccHccHHccHEEEcccHHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEcccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccEEEEcHHHHHHcccccccccHHHHHHccHHHHHcc
Coil and Loop (DISEMBL)
maamastafapsvssttnklfdssfhgapmspsllrlqpikssrpnnlsisasasppydlntfkfdpikesivSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAyelsknpniqIAIIeqsvspgggawlgGQLFSAMVVRKPAHIFLdelgidydeqdnYVVIKHAALFTSTIMSKllarpnvklfnAVAAEDLIVKGGRVGGVVTNWALVSmnhdtqscmdpnvMEAKVVVsscghdgpfgatgVKRLksigmieevpgmkaldmnSAEDAIVRLTREVVPGMIVTGMEvaeidgaprmgptfgammisgqkaarmh
Flexible Loop (DISEMBL)
maamastafapsvsstTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSisasasppydlntfkfdpikesivsreMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARMH
Low Complexity Region (SEG)
MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDvvvvGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARMH
Disordered region (IsUnstruct)
***********************************************************LNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDG**********************
Disordered Region (DISOPRED)
********************************************************PYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT****************MKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA***
Disordered Region (DISEMBL)
****************TNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMIS********
Disordered Region (DISPRO)
********************************************************PYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
O23787	356	Thiamine thiazole synthas	no	no	0.996	0.898	0.993	0.0
F6H7K5	355	Thiamine thiazole synthas	yes	no	0.981	0.887	0.832	1e-152
F6H9A9	353	Thiamine thiazole synthas	no	no	0.928	0.844	0.851	1e-151
Q38814	349	Thiamine thiazole synthas	yes	no	0.971	0.893	0.809	1e-150
Q38709	352	Thiamine thiazole synthas	N/A	no	0.925	0.843	0.865	1e-146
A9SME1	356	Thiamine thiazole synthas	N/A	no	0.971	0.876	0.776	1e-139
A9SMC8	343	Thiamine thiazole synthas	N/A	no	0.875	0.819	0.829	1e-138
A9RHX1	357	Thiamine thiazole synthas	N/A	no	0.819	0.736	0.870	1e-138
A9RHW6	357	Thiamine thiazole synthas	N/A	no	0.819	0.736	0.870	1e-138
C5X2M4	352	Thiamine thiazole synthas	N/A	no	0.953	0.869	0.787	1e-137

>sp|O23787|THI4_CITSI Thiamine thiazole synthase, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/320 (99%), Positives = 319/320 (99%)

Query: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60
           MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL
Sbjct: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60

Query: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120
           NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII
Sbjct: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120

Query: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180
           EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL
Sbjct: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180

Query: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240
           LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH
Sbjct: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240

Query: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300
           DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA
Sbjct: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300

Query: 301 PRMGPTFGAMMISGQKAARM 320
           PRMGPTFGAMMISGQKAA +
Sbjct: 301 PRMGPTFGAMMISGQKAAHL 320

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.
Citrus sinensis (taxid: 2711)

>sp|F6H7K5|THI42_VITVI Thiamine thiazole synthase 2, chloroplastic OS=Vitis vinifera GN=THI1-2 PE=3 SV=1

 Score =  536 bits (1381), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/322 (83%), Positives = 290/322 (90%), Gaps = 7/322 (2%)

Query: 1   MAAMASTAFAPSVSSTTNKLFD--SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPY 58
           MA+MA+T  + S S+     FD  SSFHG+P+S    R+ PIK S   + +IS S+  PY
Sbjct: 1   MASMATTLTSLS-SNPKPAFFDNKSSFHGSPIS---YRVLPIKVSH-QSPTISMSSVSPY 55

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIA 118
           DL +FKF+PIKESIV+REMTRRYM DMITYADTDVV+VGAGSAGLSCAYELSKNP+I++A
Sbjct: 56  DLQSFKFEPIKESIVAREMTRRYMMDMITYADTDVVIVGAGSAGLSCAYELSKNPSIRVA 115

Query: 119 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
           IIEQSVSPGGGAWLGGQLFSAMVVRKPAH FLDELGI+YDEQDNYVVIKHAALFTSTIMS
Sbjct: 116 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELGIEYDEQDNYVVIKHAALFTSTIMS 175

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
           KLLARPNVKLFNAVAAEDLIVK  RV GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC
Sbjct: 176 KLLARPNVKLFNAVAAEDLIVKEERVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 235

Query: 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298
           GHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEID
Sbjct: 236 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEID 295

Query: 299 GAPRMGPTFGAMMISGQKAARM 320
           GAPRMGPTFGAMMISGQKAA +
Sbjct: 296 GAPRMGPTFGAMMISGQKAAHL 317

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Vitis vinifera (taxid: 29760)

>sp|F6H9A9|THI41_VITVI Thiamine thiazole synthase 1, chloroplastic OS=Vitis vinifera GN=THI1-1 PE=3 SV=1

 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/304 (85%), Positives = 285/304 (93%), Gaps = 6/304 (1%)

Query: 20  LFD---SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSRE 76
           +FD   SSFHG P++ +  RL P+KS+ P NL+++A+A P YDL +FKF+PIKESIVSRE
Sbjct: 16  VFDPHKSSFHGVPIA-TQARLSPVKST-PVNLAVTAAAMP-YDLRSFKFEPIKESIVSRE 72

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL 136
           MTRRYM DMITYADTDVVVVGAGSAGLSCAYELSKNP++Q+AIIEQSVSPGGGAWLGGQL
Sbjct: 73  MTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKNPSVQVAIIEQSVSPGGGAWLGGQL 132

Query: 137 FSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 196
           FS+MVVRKPAH FLDELG++YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED
Sbjct: 133 FSSMVVRKPAHRFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 192

Query: 197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256
           LI+K G+VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+S+G
Sbjct: 193 LIIKEGKVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLRSVG 252

Query: 257 MIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK 316
           MI+ VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQK
Sbjct: 253 MIDSVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQK 312

Query: 317 AARM 320
           AA +
Sbjct: 313 AAHL 316

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Vitis vinifera (taxid: 29760)

>sp|Q38814|THI4_ARATH Thiamine thiazole synthase, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1

 Score =  531 bits (1369), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/321 (80%), Positives = 288/321 (89%), Gaps = 9/321 (2%)

Query: 1   MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYD 59
           MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YD
Sbjct: 1   MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YD 52

Query: 60  LNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAI 119
           LN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLS AYE+SKNPN+Q+AI
Sbjct: 53  LNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAI 112

Query: 120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 179
           IEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIMSK
Sbjct: 113 IEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSK 172

Query: 180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239
           LLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCG
Sbjct: 173 LLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG 232

Query: 240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDG 299
           HDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDG
Sbjct: 233 HDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDG 292

Query: 300 APRMGPTFGAMMISGQKAARM 320
           APRMGPTFGAMMISGQKA ++
Sbjct: 293 APRMGPTFGAMMISGQKAGQL 313

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38709|THI4_ALNGL Thiamine thiazole synthase, chloroplastic OS=Alnus glutinosa GN=THI1 PE=2 SV=1

 Score =  517 bits (1331), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/298 (86%), Positives = 278/298 (93%), Gaps = 1/298 (0%)

Query: 23  SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYM 82
           SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM
Sbjct: 20  SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYM 79

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV 142
            DMITYADTDVVVVGAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWLGGQLFS MVV
Sbjct: 80  MDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVV 138

Query: 143 RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 202
           RKPAH+FLDELGI+YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG
Sbjct: 139 RKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 198

Query: 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVP 262
           RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VP
Sbjct: 199 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVP 258

Query: 263 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM 320
           GMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA +
Sbjct: 259 GMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 316

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Alnus glutinosa (taxid: 3517)

>sp|A9SME1|THI42_PHYPA Thiamine thiazole synthase 2, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-2 PE=3 SV=1

 Score =  496 bits (1276), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/318 (77%), Positives = 273/318 (85%), Gaps = 6/318 (1%)

Query: 5   ASTAFAPSVSSTTNKLFDSSFHGAPM--SPSLLRLQPIKSSRPNNLSISASASPPYDLNT 62
           A  AFAP +SS+      SS  G  M  SP       ++ +R    S S  +   YDLN 
Sbjct: 8   AGVAFAPKISSSNVGSSSSSLAGVRMVASPK----AQLRHARLPAASASMYSDAKYDLNN 63

Query: 63  FKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122
           +KF+PIKESIV+REMTRRYMTDMIT+ADTDVVVVGAGSAGLSCAYELSKNPN+++AIIEQ
Sbjct: 64  YKFEPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKNPNVKVAIIEQ 123

Query: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
           SVSPGGGAWLGGQLFSAMVVRKPAH FLDE+ + Y+E +NYVVIKHAALFTSTIMSKLLA
Sbjct: 124 SVSPGGGAWLGGQLFSAMVVRKPAHRFLDEIEVPYEELENYVVIKHAALFTSTIMSKLLA 183

Query: 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242
           RPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+TQSCMDPNVMEAKVVVSSCGHDG
Sbjct: 184 RPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSSCGHDG 243

Query: 243 PFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 302
           PFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ TREVVPGMIVTGMEVAEIDG+PR
Sbjct: 244 PFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKHTREVVPGMIVTGMEVAEIDGSPR 303

Query: 303 MGPTFGAMMISGQKAARM 320
           MGPTFGAMMISGQKAA +
Sbjct: 304 MGPTFGAMMISGQKAAHL 321

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9SMC8|THI44_PHYPA Thiamine thiazole synthase 4, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-4 PE=3 SV=1

 Score =  492 bits (1267), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/281 (82%), Positives = 258/281 (91%)

Query: 40  IKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAG 99
           ++ +R    S S  +   YDLN +KF+PIKESIV+REMTRRYMT+MIT+ADTDVVVVGAG
Sbjct: 28  LRHARLPAASASMYSDAKYDLNNYKFEPIKESIVAREMTRRYMTEMITHADTDVVVVGAG 87

Query: 100 SAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE 159
           SAGLSCAYELSKNPN+++AIIEQSVSPGGGAWLGGQLFSAMVVRKPAH FLDE+ + Y+E
Sbjct: 88  SAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHRFLDEIEVPYEE 147

Query: 160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219
            +NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+
Sbjct: 148 LENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHN 207

Query: 220 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRL 279
           TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ 
Sbjct: 208 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKH 267

Query: 280 TREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM 320
           TREVVPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQKAA +
Sbjct: 268 TREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHL 308

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9RHX1|THI41_PHYPA Thiamine thiazole synthase 1, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-1 PE=3 SV=1

 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/263 (87%), Positives = 250/263 (95%)

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN +KF PIKESIV+REMTRRYMTDMIT+ADTDVVVVGAGSAGLSCAYELSKNPN+++
Sbjct: 60  YDLNNYKFAPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKNPNVKV 119

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AI+EQSVSPGGGAWLGGQLFSAM+VRKPAH FLDE+ + Y+E +NYVVIKHAALFTSTIM
Sbjct: 120 AIVEQSVSPGGGAWLGGQLFSAMIVRKPAHRFLDEIEVPYEEMENYVVIKHAALFTSTIM 179

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+TQSCMDPNVMEAKVVVSS
Sbjct: 180 SKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSS 239

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ TREVVPGMIVTGMEVAEI
Sbjct: 240 CGHDGPFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKHTREVVPGMIVTGMEVAEI 299

Query: 298 DGAPRMGPTFGAMMISGQKAARM 320
           DG+PRMGPTFGAMMISGQKAA +
Sbjct: 300 DGSPRMGPTFGAMMISGQKAAHL 322

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9RHW6|THI43_PHYPA Thiamine thiazole synthase 3, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-3 PE=3 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/263 (87%), Positives = 250/263 (95%)

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN +KF PIKESIV+REMTRRYMTDMIT+ADTDVVVVGAGSAGLSCAYELSKNPN+++
Sbjct: 60  YDLNNYKFAPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKNPNVKV 119

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AI+EQSVSPGGGAWLGGQLFSAM+VRKPAH FLDE+ + Y+E +NYVVIKHAALFTSTIM
Sbjct: 120 AIVEQSVSPGGGAWLGGQLFSAMIVRKPAHRFLDEIEVPYEEMENYVVIKHAALFTSTIM 179

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+TQSCMDPNVMEAKVVVSS
Sbjct: 180 SKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSS 239

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ TREVVPGMIVTGMEVAEI
Sbjct: 240 CGHDGPFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKHTREVVPGMIVTGMEVAEI 299

Query: 298 DGAPRMGPTFGAMMISGQKAARM 320
           DG+PRMGPTFGAMMISGQKAA +
Sbjct: 300 DGSPRMGPTFGAMMISGQKAAHL 322

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|C5X2M4|THI42_SORBI Thiamine thiazole synthase 2, chloroplastic OS=Sorghum bicolor GN=THI1-2 PE=3 SV=1

 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/316 (78%), Positives = 279/316 (88%), Gaps = 10/316 (3%)

Query: 13  VSSTTNKLFDSSFHGA--------PMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFK 64
           +++T + L  SSF GA        P SP+++     + +     S  +S++PPYDL +F+
Sbjct: 1   MATTASSLLKSSFAGARLPASTRTPSSPAVVATP--RGAGAIRASSISSSNPPYDLTSFR 58

Query: 65  FDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124
           F PIKES+VSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYELSK+P++ IAI+EQSV
Sbjct: 59  FSPIKESVVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPSVSIAIVEQSV 118

Query: 125 SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARP 184
           SPGGGAWLGGQLFSAMVVRKPAH+FLDELG+ YDE ++YVVIKHAALFTST+MS+LLARP
Sbjct: 119 SPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSRLLARP 178

Query: 185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244
           NVKLFNAVA EDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF
Sbjct: 179 NVKLFNAVAVEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 238

Query: 245 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 304
           GATGVKRL+ IGMI +VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMG
Sbjct: 239 GATGVKRLQDIGMISDVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMG 298

Query: 305 PTFGAMMISGQKAARM 320
           PTFGAMMISGQKAA +
Sbjct: 299 PTFGAMMISGQKAAHL 314

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Sorghum bicolor (taxid: 4558)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
6094476	356	RecName: Full=Thiamine thiazole synthase	0.996	0.898	0.993	0.0
295687239	357	thiazole biosynthetic enzyme [Gossypium	0.993	0.893	0.824	1e-153
30013665	358	putative chloroplast thiazole biosynthet	0.990	0.888	0.836	1e-153
118486174	357	unknown [Populus trichocarpa]	0.993	0.893	0.844	1e-152
388512817	349	unknown [Medicago truncatula]	0.975	0.896	0.825	1e-151
255563713	359	electron transfer flavoprotein-ubiquinon	0.937	0.838	0.861	1e-151
297792939	352	hypothetical protein ARALYDRAFT_918614 [	0.975	0.889	0.823	1e-150
225444377	355	PREDICTED: thiazole biosynthetic enzyme,	0.981	0.887	0.832	1e-150
449470423	359	PREDICTED: thiamine thiazole synthase, c	0.928	0.830	0.897	1e-150
225461077	353	PREDICTED: thiazole biosynthetic enzyme,	0.928	0.844	0.851	1e-149

>gi|6094476|sp|O23787.1|THI4_CITSI RecName: Full=Thiamine thiazole synthase, chloroplastic; AltName: Full=Thiazole biosynthetic enzyme; Flags: Precursor gi|2582665|emb|CAB05370.1| thi [Citrus sinensis]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/320 (99%), Positives = 319/320 (99%)

Query: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60
           MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL
Sbjct: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60

Query: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120
           NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII
Sbjct: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120

Query: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180
           EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL
Sbjct: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180

Query: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240
           LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH
Sbjct: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240

Query: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300
           DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA
Sbjct: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300

Query: 301 PRMGPTFGAMMISGQKAARM 320
           PRMGPTFGAMMISGQKAA +
Sbjct: 301 PRMGPTFGAMMISGQKAAHL 320

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295687239|gb|ADG27845.1| thiazole biosynthetic enzyme [Gossypium hirsutum]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/319 (82%), Positives = 287/319 (89%)

Query: 2   AAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLN 61
           +++A+T  + S       LF+SSFHG P+ P     +   S    ++S+SA++ PPYDLN
Sbjct: 3   SSIATTLTSSSKLCRNTSLFESSFHGVPIKPLSFHFKTKSSPCNASISMSAASPPPYDLN 62

Query: 62  TFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
            F+FDPIKESIVSREMTRRYM DMITYADTDVVVVGAGSAGLSCAYELSKNP++QIAI+E
Sbjct: 63  NFRFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKNPSVQIAIVE 122

Query: 122 QSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLL 181
           QSVSPGGGAWLGGQLFSAMVVRKPAH FLDEL I+YDEQD+YVVIKHAALFTSTIMSKLL
Sbjct: 123 QSVSPGGGAWLGGQLFSAMVVRKPAHRFLDELAIEYDEQDDYVVIKHAALFTSTIMSKLL 182

Query: 182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241
           ARPNVKLFNAVAAEDLIVK GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD
Sbjct: 183 ARPNVKLFNAVAAEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 242

Query: 242 GPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAP 301
           GPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEIDG+P
Sbjct: 243 GPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGSP 302

Query: 302 RMGPTFGAMMISGQKAARM 320
           RMGPTFGAMMISGQKAA +
Sbjct: 303 RMGPTFGAMMISGQKAAHL 321

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30013665|gb|AAP03875.1| putative chloroplast thiazole biosynthetic protein [Nicotiana tabacum]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/324 (83%), Positives = 293/324 (90%), Gaps = 6/324 (1%)

Query: 1   MAAMASTAFAPSVSSTTNKL--FDSSFHGAPMSPSLLRLQPIKSSRPN-NLSISASASPP 57
           MA MAST  A SV + TN L    SSF G P+  S  RL+P+KS++ N  +S+SA +SPP
Sbjct: 1   MATMAST-LASSVVTKTNFLDTHKSSFSGVPLF-SQARLKPVKSAQQNMTISMSADSSPP 58

Query: 58  -YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQ 116
            YDLN F F+PIKESIVSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYE+SKNPN+Q
Sbjct: 59  PYDLNAFSFNPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYEISKNPNVQ 118

Query: 117 IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTI 176
           +AI+EQSVSPGGGAWLGGQLFSAMVVRKPAH+FL+ELGIDYDEQDNYVVIKHAALFTSTI
Sbjct: 119 VAILEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELGIDYDEQDNYVVIKHAALFTSTI 178

Query: 177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236
           MSKLLARPNVKLFNAVA EDLIVK GRVGGVVTNW+LVS NHDTQSCMDPNVMEAK+VVS
Sbjct: 179 MSKLLARPNVKLFNAVATEDLIVKNGRVGGVVTNWSLVSQNHDTQSCMDPNVMEAKIVVS 238

Query: 237 SCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296
           SCGHDGP GATGVKRLKSIGMI  VPGMKAL+MN+AEDAIVRLTREVVPGMIVTGMEVAE
Sbjct: 239 SCGHDGPMGATGVKRLKSIGMINHVPGMKALNMNAAEDAIVRLTREVVPGMIVTGMEVAE 298

Query: 297 IDGAPRMGPTFGAMMISGQKAARM 320
           IDGAPRMGPTFGAMMISGQKAA +
Sbjct: 299 IDGAPRMGPTFGAMMISGQKAAHL 322

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486174|gb|ABK94930.1| unknown [Populus trichocarpa]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/322 (84%), Positives = 294/322 (91%), Gaps = 3/322 (0%)

Query: 1   MAAMASTAFAPSVSSTTNKLFD--SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPY 58
           MA MA+T  + S  S     FD  SSFHG P+S   LR+QP KSS   N+SIS S SPPY
Sbjct: 1   MATMATTLTSLSTKSQKLSPFDTSSSFHGTPISKPTLRMQPTKSSSSPNVSISMS-SPPY 59

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIA 118
           DLN FKF+PIKESIVSREMTRRYM DMIT+ADTDVV+VGAGSAGLSCAYELSKNP+++IA
Sbjct: 60  DLNAFKFEPIKESIVSREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPSVKIA 119

Query: 119 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
           I+EQSVSPGGGAWLGGQLFSAMVVRKPAH+FL+ELGI+YDEQ++YVVIKHAALFTSTIMS
Sbjct: 120 IVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELGIEYDEQEDYVVIKHAALFTSTIMS 179

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
           KLLARPNVKLFNAVAAEDLIVK GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC
Sbjct: 180 KLLARPNVKLFNAVAAEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 239

Query: 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298
           GHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIV+LTREVVPGMIVTGMEVAEID
Sbjct: 240 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVKLTREVVPGMIVTGMEVAEID 299

Query: 299 GAPRMGPTFGAMMISGQKAARM 320
           G+PRMGPTFGAMMISGQKAA +
Sbjct: 300 GSPRMGPTFGAMMISGQKAAHL 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512817|gb|AFK44470.1| unknown [Medicago truncatula]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/320 (82%), Positives = 288/320 (90%), Gaps = 7/320 (2%)

Query: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60
           MA+MA+ + A S+SST    F   F+G P++    R   I  S P  +++S + +PPYD+
Sbjct: 1   MASMATASLATSLSSTPKSSF---FNGRPIA---TRTSTIIKSTPQKITMSLT-TPPYDI 53

Query: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120
           NTFKF PIKESIVSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYELSKNPNI IAII
Sbjct: 54  NTFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNISIAII 113

Query: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180
           EQSVSPGGGAWLGGQLFSAMVVRKPAH+FLDE+G++YDEQ++YVVIKHAALFTSTIMSKL
Sbjct: 114 EQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVEYDEQEDYVVIKHAALFTSTIMSKL 173

Query: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240
           LA+PNVKLFNAVAAEDLIVK  RV GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH
Sbjct: 174 LAKPNVKLFNAVAAEDLIVKENRVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 233

Query: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300
           DGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGA
Sbjct: 234 DGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGA 293

Query: 301 PRMGPTFGAMMISGQKAARM 320
           PRMGPTFGAMMISGQKAA +
Sbjct: 294 PRMGPTFGAMMISGQKAAHL 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563713|ref|XP_002522858.1| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Ricinus communis] gi|223537942|gb|EEF39556.1| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Ricinus communis]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/303 (86%), Positives = 286/303 (94%), Gaps = 2/303 (0%)

Query: 20  LFDSS--FHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREM 77
           LF+SS  F+G P++   LR+QP   +   ++S+SAS++P Y+LN+FKFDPIKESIVSREM
Sbjct: 23  LFESSSAFYGTPVAAPSLRMQPTSKTNAVSVSMSASSTPSYNLNSFKFDPIKESIVSREM 82

Query: 78  TRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF 137
           TRRYMTDMI+YADTDVV+VGAGSAGLSCAYELSKNP++Q+AIIEQSVSPGGGAWLGGQLF
Sbjct: 83  TRRYMTDMISYADTDVVIVGAGSAGLSCAYELSKNPDVQVAIIEQSVSPGGGAWLGGQLF 142

Query: 138 SAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197
           SAMVVRKPAH FLDE+GI+YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL
Sbjct: 143 SAMVVRKPAHRFLDEVGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 202

Query: 198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 257
           IVK GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM
Sbjct: 203 IVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 262

Query: 258 IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA 317
           I+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQKA
Sbjct: 263 IDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKA 322

Query: 318 ARM 320
           A +
Sbjct: 323 AHL 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792939|ref|XP_002864354.1| hypothetical protein ARALYDRAFT_918614 [Arabidopsis lyrata subsp. lyrata] gi|297310189|gb|EFH40613.1| hypothetical protein ARALYDRAFT_918614 [Arabidopsis lyrata subsp. lyrata]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/323 (82%), Positives = 292/323 (90%), Gaps = 10/323 (3%)

Query: 1   MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMS--PSLLRLQPIKSSRPNNLSISASASPP 57
           MAA+AST    S+SST   +LFDSSFHG+ +S  P  + L+P   S    +S+ A+ +  
Sbjct: 1   MAAIASTL---SLSSTKPQRLFDSSFHGSSISAAPISIGLKPRSGSV---VSVRATTAG- 53

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLSCAYE+SKNPN+Q+
Sbjct: 54  YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSCAYEISKNPNVQV 113

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQDNYVV+KHAALFTSTIM
Sbjct: 114 AIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDNYVVVKHAALFTSTIM 173

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NHDTQSCMDPNVMEAK+VVSS
Sbjct: 174 SKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHDTQSCMDPNVMEAKIVVSS 233

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEI
Sbjct: 234 CGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI 293

Query: 298 DGAPRMGPTFGAMMISGQKAARM 320
           DGAPRMGPTFGAMMISGQKA ++
Sbjct: 294 DGAPRMGPTFGAMMISGQKAGQL 316

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444377|ref|XP_002267414.1| PREDICTED: thiazole biosynthetic enzyme, chloroplastic [Vitis vinifera] gi|378524328|sp|F6H7K5.1|THI42_VITVI RecName: Full=Thiamine thiazole synthase 2, chloroplastic; AltName: Full=Thiazole biosynthetic enzyme 2; Flags: Precursor

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/322 (83%), Positives = 290/322 (90%), Gaps = 7/322 (2%)

Query: 1   MAAMASTAFAPSVSSTTNKLFD--SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPY 58
           MA+MA+T  + S S+     FD  SSFHG+P+S    R+ PIK S   + +IS S+  PY
Sbjct: 1   MASMATTLTSLS-SNPKPAFFDNKSSFHGSPIS---YRVLPIKVSH-QSPTISMSSVSPY 55

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIA 118
           DL +FKF+PIKESIV+REMTRRYM DMITYADTDVV+VGAGSAGLSCAYELSKNP+I++A
Sbjct: 56  DLQSFKFEPIKESIVAREMTRRYMMDMITYADTDVVIVGAGSAGLSCAYELSKNPSIRVA 115

Query: 119 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
           IIEQSVSPGGGAWLGGQLFSAMVVRKPAH FLDELGI+YDEQDNYVVIKHAALFTSTIMS
Sbjct: 116 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELGIEYDEQDNYVVIKHAALFTSTIMS 175

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
           KLLARPNVKLFNAVAAEDLIVK  RV GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC
Sbjct: 176 KLLARPNVKLFNAVAAEDLIVKEERVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 235

Query: 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298
           GHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEID
Sbjct: 236 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEID 295

Query: 299 GAPRMGPTFGAMMISGQKAARM 320
           GAPRMGPTFGAMMISGQKAA +
Sbjct: 296 GAPRMGPTFGAMMISGQKAAHL 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470423|ref|XP_004152916.1| PREDICTED: thiamine thiazole synthase, chloroplastic-like [Cucumis sativus] gi|449531549|ref|XP_004172748.1| PREDICTED: thiamine thiazole synthase, chloroplastic-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/303 (89%), Positives = 288/303 (95%), Gaps = 5/303 (1%)

Query: 20  LFDSSFHGAPM-SPSLLRLQPIKSSRPNNLSISASAS-PPYDLNTFKFDPIKESIVSREM 77
           L DSSFHG P+ SPS LRL   KS+   +L+ISASAS PPYDLN FKF+PI+ESIVSREM
Sbjct: 18  LHDSSFHGTPLASPSSLRL---KSTAATSLTISASASQPPYDLNQFKFNPIRESIVSREM 74

Query: 78  TRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF 137
           TRRYMTDMITYADTDVV+VGAGSAGLSCAYELSKNPNI+IAIIEQSVSPGGGAWLGGQLF
Sbjct: 75  TRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNIRIAIIEQSVSPGGGAWLGGQLF 134

Query: 138 SAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197
           SAMVVRKPAH+FLDE+G++YDEQD+YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL
Sbjct: 135 SAMVVRKPAHLFLDEVGVEYDEQDDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 194

Query: 198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 257
           IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM
Sbjct: 195 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 254

Query: 258 IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA 317
           I+ VPGMKALDMN+AEDAIVR TREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA
Sbjct: 255 IDSVPGMKALDMNTAEDAIVRFTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA 314

Query: 318 ARM 320
           A +
Sbjct: 315 AHL 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461077|ref|XP_002281769.1| PREDICTED: thiazole biosynthetic enzyme, chloroplastic isoform 1 [Vitis vinifera] gi|359494007|ref|XP_003634708.1| PREDICTED: thiazole biosynthetic enzyme, chloroplastic [Vitis vinifera] gi|378524288|sp|F6H9A9.1|THI41_VITVI RecName: Full=Thiamine thiazole synthase 1, chloroplastic; AltName: Full=Thiazole biosynthetic enzyme 1; Flags: Precursor

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/304 (85%), Positives = 285/304 (93%), Gaps = 6/304 (1%)

Query: 20  LFD---SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSRE 76
           +FD   SSFHG P++ +  RL P+KS+ P NL+++A+A P YDL +FKF+PIKESIVSRE
Sbjct: 16  VFDPHKSSFHGVPIA-TQARLSPVKST-PVNLAVTAAAMP-YDLRSFKFEPIKESIVSRE 72

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL 136
           MTRRYM DMITYADTDVVVVGAGSAGLSCAYELSKNP++Q+AIIEQSVSPGGGAWLGGQL
Sbjct: 73  MTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKNPSVQVAIIEQSVSPGGGAWLGGQL 132

Query: 137 FSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 196
           FS+MVVRKPAH FLDELG++YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED
Sbjct: 133 FSSMVVRKPAHRFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 192

Query: 197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256
           LI+K G+VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+S+G
Sbjct: 193 LIIKEGKVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLRSVG 252

Query: 257 MIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK 316
           MI+ VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQK
Sbjct: 253 MIDSVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQK 312

Query: 317 AARM 320
           AA +
Sbjct: 313 AAHL 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2160130	349	THI1 [Arabidopsis thaliana (ta	0.971	0.893	0.797	7.1e-132
UNIPROTKB|G4NKA9	327	MGG_03098 "Thiazole biosynthet	0.906	0.889	0.579	7.7e-87
POMBASE|SPBC26H8.01	328	thi2 "thiazole biosynthetic en	0.834	0.817	0.625	9.9e-87
CGD|CAL0003455	354	THI4 [Candida albicans (taxid:	0.679	0.615	0.576	1.5e-85
ASPGD|ASPL0000018231	331	thiF [Emericella nidulans (tax	0.803	0.779	0.607	6.4e-83
SGD|S000003376	326	THI4 "Thiazole synthase, abund	0.535	0.527	0.597	2e-79

TAIR|locus:2160130 THI1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1293 (460.2 bits), Expect = 7.1e-132, P = 7.1e-132
 Identities = 256/321 (79%), Positives = 284/321 (88%)

Query:     1 MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYD 59
             MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YD
Sbjct:     1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YD 52

Query:    60 LNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAI 119
             LN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AI
Sbjct:    53 LNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAI 112

Query:   120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 179
             IEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIMSK
Sbjct:   113 IEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSK 172

Query:   180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239
             LLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCG
Sbjct:   173 LLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG 232

Query:   240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDG 299
             HDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDG
Sbjct:   233 HDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDG 292

Query:   300 APRMGPTFGAMMISGQKAARM 320
             APRMGPTFGAMMISGQKA ++
Sbjct:   293 APRMGPTFGAMMISGQKAGQL 313

GO:0009228 "thiamine biosynthetic process" evidence=IEA;IGI;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0018131 "oxazole or thiazole biosynthetic process" evidence=IGI;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|G4NKA9 MGG_03098 "Thiazole biosynthetic enzyme" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 178/307 (57%), Positives = 226/307 (73%)

Query:    28 APMSPSLLRLQP--IKSSRP--NNLSISASASPPYDL----NTFKFDPIKESIVSREMTR 79
             A  SP      P  +K+ +   N  S +A+A+  +DL    N F F PI+ES VSR MT 
Sbjct:     5 AATSPIASHAHPLDVKNGKHQHNADSAAAAAAKLHDLATDWNQFSFSPIRESQVSRAMTS 64

Query:    80 RYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFS 138
             RY  D+  +A+TD    GAGS GLS A+ L+   P+++I ++E  V+PGGGAWLGGQLFS
Sbjct:    65 RYFADLHAHAETDVVIVGAGSCGLSAAFHLATARPDLRITLVEAGVAPGGGAWLGGQLFS 124

Query:   139 AMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198
             AMV+RKPAH+FLD LG+ Y+++ ++VV+KHAALFTST++SK+LA  NVKLFNA A EDLI
Sbjct:   125 AMVMRKPAHLFLDRLGVAYEDEGSFVVVKHAALFTSTLLSKVLALDNVKLFNATAVEDLI 184

Query:   199 VK--GG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR 251
              +  GG     RV GVVTNW LVSM+HD QSCMDPN + A VV+S+ GHDGPFGA   KR
Sbjct:   185 TRREGGDNAGVRVAGVVTNWTLVSMHHDDQSCMDPNTINAPVVISTTGHDGPFGAFSAKR 244

Query:   252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM 311
             L S+  IE++ GM+ LDM SAEDAIV+ TRE+VPG+I+ GME++EIDGA RMGPTFGAM+
Sbjct:   245 LVSMKQIEQLGGMRGLDMQSAEDAIVKRTREIVPGLIIGGMELSEIDGANRMGPTFGAMV 304

Query:   312 ISGQKAA 318
             +SG KAA
Sbjct:   305 LSGVKAA 311

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPBC26H8.01 thi2 "thiazole biosynthetic enzyme" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 172/275 (62%), Positives = 213/275 (77%)

Query:    52 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL- 109
             + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D    GAGSAGL+ AY + 
Sbjct:    37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIG 96

Query:   110 SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169
             ++ P+++IAIIE SV+PGGGAWLGGQLFSAMVVRKPA +FL+E+G+ Y+++ +YVV+KHA
Sbjct:    97 TRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHA 156

Query:   170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCM 224
             ALFTST+M++ LA PNVKLFNA A EDLIVK G     R+ GVVTNW LVS+NH  QSCM
Sbjct:   157 ALFTSTVMARTLALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCM 216

Query:   225 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVV 284
             DPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV 
Sbjct:   217 DPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVF 276

Query:   285 PGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAR 319
             PGMIV GME++E DGA RMGPTFG MM SG KAA+
Sbjct:   277 PGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQ 311

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009228 "thiamine biosynthetic process" evidence=IMP

GO:0018131 "oxazole or thiazole biosynthetic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0003455 THI4 [Candida albicans (taxid:5476)]

 Score = 657 (236.3 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
 Identities = 132/229 (57%), Positives = 166/229 (72%)

Query:    37 LQPIKSSRPNNLSISA-SASPPY-DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXX 94
             L P  + +  NL   A +    + D N FKF PI+ES VSR MTRRY  D+  +A++D  
Sbjct:    17 LNPKSTQQAINLKSDAKNGKVSFADWNEFKFAPIRESTVSRAMTRRYFADLDKFAESDIV 76

Query:    95 XXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL 153
               GAGSAGLS AY L KN P+++IAIIE SVSPGGG WLGGQLFSAMV+RKPAH+FLD++
Sbjct:    77 IIGAGSAGLSAAYTLGKNRPDLKIAIIEASVSPGGGCWLGGQLFSAMVLRKPAHLFLDDM 136

Query:   154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGV 207
             G+DY+++ +YVV+KHAALF ST+MSK+L  PN+KLFNA A EDLI +        R+ GV
Sbjct:   137 GLDYEDEGDYVVVKHAALFMSTLMSKVLQFPNIKLFNATAVEDLITRKDPATNLQRIAGV 196

Query:   208 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256
             V NWA   ++HDTQSCMDPN +   VV+S+ GHDGPFGA   KRL+ +G
Sbjct:   197 VVNWA--QLDHDTQSCMDPNTINCNVVLSTSGHDGPFGAFTAKRLEQLG 243

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0009228 "thiamine biosynthetic process" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

GO:0052837 "thiazole biosynthetic process" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

ASPGD|ASPL0000018231 thiF [Emericella nidulans (taxid:162425)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 164/270 (60%), Positives = 208/270 (77%)

Query:    61 NTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAI 119
             + FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L+K  P+++IAI
Sbjct:    46 DNFKFAPIRESQVSRAMTRRYFQDLDRYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAI 105

Query:   120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQD---NYVVIKHAALFTSTI 176
             IE SVSPGGGAWLGGQLFSAMV+R+PA +FL+ELG+ Y+E     NYVV+KHA+LFTST+
Sbjct:   106 IEASVSPGGGAWLGGQLFSAMVMRRPAELFLNELGVPYEEDPDMPNYVVVKHASLFTSTL 165

Query:   177 MSKLLARPNVKLFNAVAAEDLIVKGG--------RVGGVVTNWALVSMNHDTQSCMDPNV 228
             +SK+L+ PNVKLFNA   EDL+ + G        ++ GVVTNW LV+++HD  SCMDPN 
Sbjct:   166 LSKVLSFPNVKLFNATCVEDLVTRPGPNGNAQEVQIAGVVTNWTLVTLHHDDHSCMDPNT 225

Query:   229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMI 288
             + A V++S+ GHDGPFGA   KRL S+  I+++ GM+ LDMNSAEDAIV+ TREV  G+I
Sbjct:   226 INAPVIISTTGHDGPFGAFSAKRLVSMTTIDKLGGMRGLDMNSAEDAIVKNTREVAKGLI 285

Query:   289 VTGMEVAEIDGAPRMGPTFGAMMISGQKAA 318
             + GME++EIDG  RMGPTFGAM++SG KAA
Sbjct:   286 IGGMELSEIDGFNRMGPTFGAMVLSGVKAA 315

GO:0009228 "thiamine biosynthetic process" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

GO:0052837 "thiazole biosynthetic process" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

SGD|S000003376 THI4 "Thiazole synthase, abundant protein involved in the formation of the" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 539 (194.8 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
 Identities = 107/179 (59%), Positives = 134/179 (74%)

Query:    59 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQI 117
             D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++
Sbjct:    34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 93

Query:   118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
              IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++
Sbjct:    94 CIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVL 153

Query:   178 SKLLARPNVKLFNAVAAEDLIV-----KGG-RVGGVVTNWALVSMNHDTQSCMDPNVME 230
             SK+L  PNVKLFNA   EDL+      KG   V GVVTNW LV+  H TQ CMDPNV+E
Sbjct:   154 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIE 212

GO:0005829 "cytosol" evidence=IDA

GO:0052837 "thiazole biosynthetic process" evidence=IDA

GO:0000002 "mitochondrial genome maintenance" evidence=IMP

GO:0008198 "ferrous iron binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009228 "thiamine biosynthetic process" evidence=IEA;IMP

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
G5EAZ2	THI4_EMENI	No assigned EC number	0.6162	0.8068	0.7824	yes	no
F6H9A9	THI41_VITVI	No assigned EC number	0.8519	0.9283	0.8441	no	no
Q4WMX7	THI4_ASPFU	No assigned EC number	0.6051	0.8068	0.7801	yes	no
P32318	THI4_YEAST	No assigned EC number	0.5438	0.8130	0.8006	yes	no
P23618	THI4_FUSOX	No assigned EC number	0.6477	0.8068	0.8093	N/A	no
O23787	THI4_CITSI	No assigned EC number	0.9937	0.9968	0.8988	no	no
Q9UUZ9	THI4_ASPOR	No assigned EC number	0.6254	0.8068	0.7920	yes	no
F6H7K5	THI42_VITVI	No assigned EC number	0.8322	0.9813	0.8873	yes	no
C5XNN6	THI41_SORBI	No assigned EC number	0.8876	0.8286	0.7514	N/A	no
Q75F65	THI4_ASHGO	No assigned EC number	0.5174	0.9096	0.8821	yes	no
A9SME1	THI42_PHYPA	No assigned EC number	0.7767	0.9719	0.8764	N/A	no
Q38709	THI4_ALNGL	No assigned EC number	0.8657	0.9252	0.8437	N/A	no
Q9UVF8	THI4_UROFA	No assigned EC number	0.5525	0.8847	0.8402	N/A	no
Q41738	THI41_MAIZE	No assigned EC number	0.8909	0.8286	0.7514	N/A	no
Q41739	THI42_MAIZE	No assigned EC number	0.7784	0.9501	0.8615	N/A	no
A8NSD1	THI4_COPC7	No assigned EC number	0.5709	0.9003	0.9233	N/A	no
P40998	THI4_SCHPO	No assigned EC number	0.6327	0.8348	0.8170	yes	no
A9RHW6	THI43_PHYPA	No assigned EC number	0.8707	0.8193	0.7366	N/A	no
Q3V7I4	THI4_YARLI	No assigned EC number	0.6153	0.8317	0.8422	yes	no
Q38814	THI4_ARATH	No assigned EC number	0.8099	0.9719	0.8939	yes	no
A9RHX1	THI41_PHYPA	No assigned EC number	0.8707	0.8193	0.7366	N/A	no
C7Z8P6	THI4_NECH7	No assigned EC number	0.6210	0.8660	0.8633	N/A	no
A9SMC8	THI44_PHYPA	No assigned EC number	0.8291	0.8753	0.8192	N/A	no
C5X2M4	THI42_SORBI	No assigned EC number	0.7879	0.9532	0.8693	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
PLN02661	357	PLN02661, PLN02661, Putative thiazole synthesis	0.0
pfam01946	229	pfam01946, Thi4, Thi4 family	1e-124
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	1e-107
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	1e-85
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	4e-72
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	2e-07
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-06
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-06
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	3e-06
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	9e-06
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	1e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	2e-05
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	5e-05
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	7e-05
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	7e-05
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	9e-05
PRK07512	513	PRK07512, PRK07512, L-aspartate oxidase; Provision	2e-04
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	2e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	4e-04
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	4e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	4e-04
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	4e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	7e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	9e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	0.001
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	0.001
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	0.001
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	0.001
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	0.002
TIGR00551	488	TIGR00551, nadB, L-aspartate oxidase	0.002
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	0.003
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	0.003

>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis

 Score =  593 bits (1531), Expect = 0.0
 Identities = 259/322 (80%), Positives = 279/322 (86%), Gaps = 4/322 (1%)

Query: 1   MAAMASTAFAPSVSSTTNKLFDS--SFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPY 58
           +AA AS     S     +    S  SF G  +  S     P+  +     S S+S++ PY
Sbjct: 3   IAAAASATSLSSSRELKSSFASSSSSFAGVRLVTS--VRAPLADASAPARSSSSSSTAPY 60

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIA 118
           DLN FKF PIKESIVSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYELSKNPN+++A
Sbjct: 61  DLNNFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVA 120

Query: 119 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
           IIEQSVSPGGGAWLGGQLFSAMVVRKPAH+FLDELG+ YDEQ+NYVVIKHAALFTSTIMS
Sbjct: 121 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAALFTSTIMS 180

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
           KLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NHDTQSCMDPNVMEAKVVVSSC
Sbjct: 181 KLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240

Query: 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298
           GHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEID
Sbjct: 241 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEID 300

Query: 299 GAPRMGPTFGAMMISGQKAARM 320
           G+PRMGPTFGAMMISGQKAA +
Sbjct: 301 GSPRMGPTFGAMMISGQKAAHL 322

Length = 357

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score =  355 bits (914), Expect = e-124
 Identities = 139/234 (59%), Positives = 172/234 (73%), Gaps = 5/234 (2%)

Query: 74  SREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
           SR +T RY  D++ YA++DVV+VGAG +GL+ AY L+K   +++AIIE+S+SPGGGAW G
Sbjct: 1   SRAITERYFEDLLDYAESDVVIVGAGPSGLTAAYYLAKK-GLKVAIIERSLSPGGGAWGG 59

Query: 134 GQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 193
           G LFSAMVVRKPA  FLDE GI Y+++ +YVV+  AA FTST+ SK L  P VK+FNA +
Sbjct: 60  GMLFSAMVVRKPADEFLDEFGIRYEDEGDYVVVADAAEFTSTLASKALQ-PGVKIFNATS 118

Query: 194 AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLK 253
            EDLI++  RV GVVTNW LV M       MDP  + AK VV + GHD PFGA  VKR+K
Sbjct: 119 VEDLIIRDNRVAGVVTNWTLVEMAGLH---MDPLTIRAKAVVDATGHDAPFGAFCVKRIK 175

Query: 254 SIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF 307
             G I +VPG ++LDMN AEDAIV+ TREVVPG+ V GM V  +DGAPRMGP F
Sbjct: 176 LEGPIGKVPGERSLDMNVAEDAIVKNTREVVPGLYVAGMAVNAVDGAPRMGPIF 229

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score =  312 bits (801), Expect = e-107
 Identities = 110/259 (42%), Positives = 159/259 (61%), Gaps = 8/259 (3%)

Query: 63  FKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122
           FKF P++E  ++R +T RY  D++ Y ++DV++VGAG +GL+ AY L+K   +++AI E+
Sbjct: 3   FKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFER 61

Query: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
            +S GGG W GG LF+ +VVR+ A   LDE GI Y+E+++   +  +A F S + ++ L 
Sbjct: 62  KLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARALD 121

Query: 183 RPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241
               K+FN V+ ED+IV+   RV GVV NW  V M       +DP  + AK VV + GHD
Sbjct: 122 AG-AKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG---LHVDPLTIRAKAVVDATGHD 177

Query: 242 GPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAP 301
               +   KR+  +G   EVPG K++     ED +V  T EV PG+ V GM V  + G P
Sbjct: 178 AEVVSFLAKRIPELG--IEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLP 235

Query: 302 RMGPTFGAMMISGQKAARM 320
           RMGP FG M++SG+KAA  
Sbjct: 236 RMGPIFGGMLLSGKKAAEE 254

Length = 262

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score =  257 bits (658), Expect = 1e-85
 Identities = 107/255 (41%), Positives = 157/255 (61%), Gaps = 11/255 (4%)

Query: 70  ESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           ES +SR +  RY  D++ YA++DV++VGAG +GL+ AY L+KN  +++ ++E+S++ GGG
Sbjct: 1   ESKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGG 59

Query: 130 AWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLF 189
           +W GG LFS +VV KPAH  LDE GI Y+++ +  V+  +A F ST+ SK L     K+F
Sbjct: 60  SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEFISTLASKALQAG-AKIF 118

Query: 190 NAVAAEDLIVKGGRVG--GVVTNWALVSMN--HDTQSCMDPNVMEAKVVVSSCGHDGPFG 245
           N  + EDLI +   VG  GVV NW+ + +   H     +DP    ++VVV + GHD    
Sbjct: 119 NGTSVEDLITRDDTVGVAGVVINWSAIELAGLH-----VDPLTQRSRVVVDATGHDAEIV 173

Query: 246 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 305
           A   K++     + ++ G K++    AE AI   TREVVP + V GM VA + G PRMGP
Sbjct: 174 AVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGP 233

Query: 306 TFGAMMISGQKAARM 320
            FG M++SG+  A  
Sbjct: 234 IFGGMLLSGKHVAEQ 248

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score =  223 bits (571), Expect = 4e-72
 Identities = 97/258 (37%), Positives = 141/258 (54%), Gaps = 16/258 (6%)

Query: 68  IKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
           + E  ++R +   Y   ++ Y + DV +VGAG +GL+ AY L+K   +++A+ E+ +S G
Sbjct: 3   LDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFG 61

Query: 128 GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARP-- 184
           GG W GG LF+ +VV++ A   LDE GI Y E +D   V            +KL A    
Sbjct: 62  GGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEA-----AAKLAAAAID 116

Query: 185 -NVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242
              K+FN V+ ED+I++   RV GVV NW  V M       +DP  +EAK VV + GHD 
Sbjct: 117 AGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM---AGLHVDPLTIEAKAVVDATGHDA 173

Query: 243 PFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 302
              +   ++   +G   EVPG K++     E  +V  T EV PG+ V GM    + G PR
Sbjct: 174 EVVSVLARKGPELG--IEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPR 231

Query: 303 MGPTFGAMMISGQKAARM 320
           MGP FG M++SG+K A +
Sbjct: 232 MGPIFGGMLLSGKKVAEL 249

Length = 257

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 15/81 (18%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHI--- 148
           DVVV+G G  GLS AYEL++   + + ++E+     G +     L    + ++ A +   
Sbjct: 1   DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLAR 59

Query: 149 -----------FLDELGIDYD 158
                       ++ELGID D
Sbjct: 60  LALESRDLWRELIEELGIDCD 80

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFSAM 140
            DVV++G G  GLS AY L++     + ++E   + GG A    G + +  
Sbjct: 5   MDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGGGAAGRNAGGILAPW 54

Length = 387

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS------------VSPGG-------GA 130
             DV +VGAG AGL+ A  L++   + + ++E++            +SP         G 
Sbjct: 2   MLDVAIVGAGPAGLALALALARAG-LDVTLLERAPRELLERGRGIALSPNALRALERLGL 60

Query: 131 W-----LGGQLFSAMVV---RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
           W     LG      MVV    +   IF D   +         V+  + L    ++    A
Sbjct: 61  WDRLEALGVPPLHVMVVDDGGRRLLIF-DAAELGRGAL--GYVVPRSDLLN-ALLEAARA 116

Query: 183 RPNVKLFNAVAAEDLIVKGGRVGGVVT 209
            PNV L      E +   G  V   ++
Sbjct: 117 LPNVTLRFGAEVEAVEQDGDGVTVTLS 143

Length = 387

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 43/200 (21%), Positives = 68/200 (34%), Gaps = 54/200 (27%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG----GGAWLG-------GQLFS 138
           + DVV+VGAG AG S A  L+K   + + ++E+   PG     G  L           F 
Sbjct: 3   EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD 61

Query: 139 AMVVR--KPAHIFL--DELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVK-----LF 189
             + R    A I+   +++ I+    + Y+V +           K LA    +       
Sbjct: 62  EEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFD-------KWLAERAEEAGAELYP 114

Query: 190 NAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 249
                  +    G V GV      V                AKVV+          A GV
Sbjct: 115 GTRVTGVIREDDGVVVGVRAGDDEV---------------RAKVVI---------DADGV 150

Query: 250 KRL--KSIGMIEEVPGMKAL 267
                + +G+ +  P   A+
Sbjct: 151 NSALARKLGLKDRKPEDYAI 170

Length = 396

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWL-----GGQLF----SAMVV 142
           + ++G G AGLS AY L K  P++++ + E     GG   L      G LF       + 
Sbjct: 3   IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG--LLRTVKIDGFLFERGPHHFLA 60

Query: 143 RKPAHI-FLDELGIDYDEQDN 162
           RK   +  + ELG++     N
Sbjct: 61  RKEEILDLIKELGLEDKLLWN 81

Length = 444

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 95  VVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFSAMVVRKPAHIFLD 151
           +VGAG +GL  AY L+K     + ++E+    GG A+     G           AHIF  
Sbjct: 1   IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDRIGGNAYSERDPG-----YRHDYGAHIFHT 54

Query: 152 E 152
            
Sbjct: 55  S 55

Length = 66

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ-------SVSPGGGAWLGGQLFSAMVVRK 144
           DVVV+G+G AGL+ A E ++   +++A++E+       +    GG    G       +  
Sbjct: 1   DVVVIGSGLAGLAAALEAAEAG-LKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDS 59

Query: 145 PAHIFLDEL-GIDYDEQDNYV 164
           P     D L G+D      YV
Sbjct: 60  PDLHPTDTLKGLDELADHPYV 80

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 30/136 (22%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV------RKP 145
           DVVVVG G AG++ A   ++    ++ ++E+        WLGG   S +V        + 
Sbjct: 1   DVVVVGGGPAGVAAAIAAARL-GAKVLLVER------RGWLGGMATSGLVGTDDGNYDRG 53

Query: 146 AHI------FLDELGIDYDEQDNYVVIK-----HAALFTSTIMSKLLARPNVK-LFNAVA 193
             I      FL  L        N            A     ++ ++LA   V  L +   
Sbjct: 54  QVIGGIAREFLRRLRARGGPLGNRTSGPWPFDPEVA---KLVLDEMLAEAGVTVLLHTRV 110

Query: 194 AEDLIVKGGRVGGVVT 209
               +VK GR+ GV  
Sbjct: 111 VG--VVKEGRITGVTV 124

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126
           D+V+VG G  GL+ A  L+++  +++A+IE +  P
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLP 35

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 47/172 (27%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQI---AIIEQSVS---PGG---------- 128
              +   DV+++G+G AGL+ A  L+ +  + +     + +S S    GG          
Sbjct: 2   NTDFEHPDVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDS 61

Query: 129 -----------GAWLGGQLFSAMVVR--KPAHIFLDELGIDYD--EQDNYVV-------- 165
                      GA L  +     +V     A  +L +LG+ +D  E     +        
Sbjct: 62  PELHVADTLAAGAGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSR 121

Query: 166 --IKHAA-----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVT 209
             I HAA        + ++ K+  RPN+ +     A DLI++ G  V GV+ 
Sbjct: 122 RRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLV 173

Length = 518

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG---GAWLGGQLFS----AMVVRK 144
           V ++G G  GLS AY L K  P+  I ++E S   GG        G        + + RK
Sbjct: 3   VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARK 62

Query: 145 PAHI-FLDELGI 155
           P+    + ELG+
Sbjct: 63  PSAPALVKELGL 74

Length = 451

>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 41/179 (22%), Positives = 61/179 (34%), Gaps = 57/179 (31%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG----AWLGGQLF 137
           M + +       V+VG G AGL  A +L+  P + +     S +P G     AW  G + 
Sbjct: 1   MMEDLRILTGRPVIVGGGLAGLMAALKLAPRPVVVL-----SPAPLGEGASSAWAQGGIA 55

Query: 138 SAM------------------------VVRK-----PAHIF-LDELGI--DYDEQDNYVV 165
           +A+                        V        PA I  L  LG+  D D      +
Sbjct: 56  AALGPDDSPALHAADTLAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLAL 115

Query: 166 ----------IKHAA--LFTSTIMSKLLAR----PNVKLFNAVAAEDLIVKGGRVGGVV 208
                     I H       + IM  L+A     P++ +     A  L+V  G V GV+
Sbjct: 116 GLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVL 174

Length = 513

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
                    DV +VG G  GL+ A  L K+  ++IA+IE
Sbjct: 11  LPSTRSLTYDVAIVGGGIVGLTLAAAL-KDSGLRIALIE 48

Length = 415

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQ 122
           D DVV++G G  G + AYELS+  P++ +A++E+
Sbjct: 3   DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEK 36

Length = 429

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
            DV++VGAG AGLS AYEL K    Q+ I+E     GG +   
Sbjct: 8   ADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSLTA 49

Length = 450

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
             VV++GAG AGL+ AYEL K     + ++E     GG
Sbjct: 5   KSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGG 41

Length = 479

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           M  Y   DVVV+GAG AG   A   ++   +++A++E+    GG
Sbjct: 2   MKEY---DVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGERLGG 41

Length = 454

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 40.5 bits (96), Expect = 7e-04
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 37/130 (28%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ--------- 135
           M  Y   DV+V+GAG AG   A   +K    ++A+IE       G   GG          
Sbjct: 1   MEKY---DVIVIGAGPAGYVAARRAAK-LGKKVALIE------KGPL-GGTCLNVGCIPS 49

Query: 136 ---LFSAMVVRKPAH-----IFLDELGIDYDEQDNYVVIKHA----ALFTSTIMSKLLAR 183
              + +A    +  H     I  D   ID+ +     V+         F   ++  L  +
Sbjct: 50  KALIAAAEAFHEAKHAEEFGIHADGPKIDFKK-----VMARVRRERDRFVGGVVEGLEKK 104

Query: 184 PNVKLFNAVA 193
           P +      A
Sbjct: 105 PKIDKIKGTA 114

Length = 460

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           DVV++G G AGL+ A  L     +++A+IE+    GG  +  G L   +++   A     
Sbjct: 1   DVVIIGGGPAGLAAAIRL-ARLGLKVALIERE---GGTCYNRGCLPKKLLLEV-AEGLEL 55

Query: 152 ELGIDYDEQ 160
            +G+   E+
Sbjct: 56  AIGLALPEE 64

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           + +VG G AGL+ AY L+K    ++ + E     GG
Sbjct: 2   IAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG 36

Length = 434

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ--SVSPGGGAW--LGGQLF 137
           D DV+VVGAG AGL  A EL+     ++ +++Q    + GG A+  LGG LF
Sbjct: 4   DADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLGGQAFWSLGG-LF 53

Length = 549

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 94  VVVGAGSAGLSCAYELSKNPN---IQIAIIEQSVSPGGGAWLGGQ 135
            ++GAG  GLS    L +      + I + + S    GG W   Q
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQ 45

Length = 153

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123
           +D+VVVGAG AGLS A  L+ +  +++ +IE+ 
Sbjct: 4   SDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQ 35

Length = 392

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126
           TDVV++GAG  GL CAY L +   +   I+++S  P
Sbjct: 6   TDVVIIGAGPVGLMCAY-LGQLCGLNTVIVDKSDGP 40

Length = 487

>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 46/164 (28%)

Query: 92  DVVVVGAGSAGLSCAYEL-------------SKNPN-------IQIAI---------IEQ 122
           DVVV+G+G+AGLS A  L                 N       I   +         +E 
Sbjct: 4   DVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVED 63

Query: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQD------------NYVVIKHAA 170
           +++ G G      +   +   + A  +L + G+ +D  +            +Y  I HAA
Sbjct: 64  TLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAA 123

Query: 171 LFT-----STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVT 209
             T     +T++ K L  PN+++     A DL+++ GRV GV  
Sbjct: 124 DATGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWV 167

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]. Length = 488

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123
           DV++VG G AGL+ A +LS  P+I   I+E+ 
Sbjct: 34  DVLIVGCGPAGLTLAAQLSAFPDITTRIVERK 65

Length = 634

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA 130
           D+V+VGAG AGL  A  L +  P +++ +I+    P    
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPN 40

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
KOG2960	328	consensus Protein involved in thiamine biosynthesi	100.0
PLN02661	357	Putative thiazole synthesis	100.0
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	100.0
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	100.0
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	100.0
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	100.0
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.75
COG2081	408	Predicted flavoproteins [General function predicti	99.74
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.67
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.67
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.66
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.66
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.66
PRK06175	433	L-aspartate oxidase; Provisional	99.65
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.65
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.64
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.64
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.63
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.63
PLN02815	594	L-aspartate oxidase	99.63
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.63
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.63
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.62
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.62
PRK07395	553	L-aspartate oxidase; Provisional	99.61
PRK08274	466	tricarballylate dehydrogenase; Validated	99.61
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.61
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.6
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.6
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.6
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.6
PRK07121	492	hypothetical protein; Validated	99.59
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.59
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.59
PRK09077	536	L-aspartate oxidase; Provisional	99.59
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.58
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.58
PRK07804	541	L-aspartate oxidase; Provisional	99.58
PRK08275	554	putative oxidoreductase; Provisional	99.57
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.55
PRK07512	513	L-aspartate oxidase; Provisional	99.55
PRK10157	428	putative oxidoreductase FixC; Provisional	99.55
PRK06185	407	hypothetical protein; Provisional	99.54
PRK08071	510	L-aspartate oxidase; Provisional	99.54
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.54
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.54
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.53
PRK08013	400	oxidoreductase; Provisional	99.53
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.53
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.53
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.53
PRK08401	466	L-aspartate oxidase; Provisional	99.52
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.52
PRK10015	429	oxidoreductase; Provisional	99.52
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.52
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.51
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.5
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.5
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.49
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.48
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.48
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.48
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.47
PRK08244	493	hypothetical protein; Provisional	99.47
PRK07190	487	hypothetical protein; Provisional	99.47
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.46
PRK06184	502	hypothetical protein; Provisional	99.46
PLN02985	514	squalene monooxygenase	99.46
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.46
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.46
PRK09126	392	hypothetical protein; Provisional	99.46
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.46
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.46
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.45
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.45
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.45
PRK06126	545	hypothetical protein; Provisional	99.44
PRK12839	572	hypothetical protein; Provisional	99.44
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.44
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.44
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.43
PRK07045	388	putative monooxygenase; Reviewed	99.43
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.43
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.43
COG0579	429	Predicted dehydrogenase [General function predicti	99.42
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.42
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.42
PRK06834	488	hypothetical protein; Provisional	99.42
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.42
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.41
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.41
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.41
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.41
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.4
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.4
PLN02546	558	glutathione reductase	99.4
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.39
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.39
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.39
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.39
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.39
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.39
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.38
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.38
PTZ00058	561	glutathione reductase; Provisional	99.38
PRK14694	468	putative mercuric reductase; Provisional	99.37
PLN02507	499	glutathione reductase	99.37
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.37
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.36
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.36
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.36
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.35
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.35
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.34
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.34
PRK08163	396	salicylate hydroxylase; Provisional	99.34
PRK07236	386	hypothetical protein; Provisional	99.34
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.33
PLN02697	529	lycopene epsilon cyclase	99.33
PRK06475	400	salicylate hydroxylase; Provisional	99.32
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.32
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.32
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.32
PRK07588	391	hypothetical protein; Provisional	99.31
PRK11445	351	putative oxidoreductase; Provisional	99.31
PRK06370	463	mercuric reductase; Validated	99.31
PRK07538	413	hypothetical protein; Provisional	99.31
PRK06847	375	hypothetical protein; Provisional	99.31
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.3
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.3
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.3
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.3
PRK06116	450	glutathione reductase; Validated	99.3
PRK08294	634	phenol 2-monooxygenase; Provisional	99.29
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.29
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.29
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.29
PRK13748	561	putative mercuric reductase; Provisional	99.29
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.28
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.28
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.28
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.28
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.28
PLN02463	447	lycopene beta cyclase	99.28
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.28
PTZ00367	567	squalene epoxidase; Provisional	99.28
PRK05868	372	hypothetical protein; Validated	99.27
PRK06996	398	hypothetical protein; Provisional	99.26
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.26
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.25
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.25
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.25
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.24
PRK14727	479	putative mercuric reductase; Provisional	99.24
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.24
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.24
TIGR02053	463	MerA mercuric reductase. This model represents the	99.23
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.23
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.23
PRK06753	373	hypothetical protein; Provisional	99.22
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.22
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.22
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.21
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.21
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.21
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.2
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	99.19
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.19
PTZ00052	499	thioredoxin reductase; Provisional	99.18
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.17
PRK05257	494	malate:quinone oxidoreductase; Validated	99.16
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.16
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.16
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.16
PRK07846	451	mycothione reductase; Reviewed	99.14
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.11
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.11
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.09
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.09
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.08
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.06
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.05
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.04
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	99.04
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.04
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.04
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.03
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.03
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.01
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.01
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.01
PRK10262	321	thioredoxin reductase; Provisional	99.01
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.01
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.98
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.98
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.98
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.97
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.97
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.96
COG3573	552	Predicted oxidoreductase [General function predict	98.96
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.95
PRK07233	434	hypothetical protein; Provisional	98.95
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.94
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.91
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.91
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.9
PRK09897	534	hypothetical protein; Provisional	98.9
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.89
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.88
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.87
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.87
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.86
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.85
KOG2852	380	consensus Possible oxidoreductase [General functio	98.84
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.84
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.82
PRK02106	560	choline dehydrogenase; Validated	98.82
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.78
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.78
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.78
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.77
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.74
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.74
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.74
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.73
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.72
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.72
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.72
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.71
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.71
PLN02785	587	Protein HOTHEAD	98.69
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.69
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.66
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.66
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.65
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.65
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.65
PLN02612	567	phytoene desaturase	98.65
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.64
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.64
PRK12831	464	putative oxidoreductase; Provisional	98.62
KOG2853	509	consensus Possible oxidoreductase [General functio	98.61
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.61
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.61
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	98.61
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.61
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.61
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.6
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.6
TIGR02053	463	MerA mercuric reductase. This model represents the	98.6
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.6
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.58
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.58
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.58
PRK06370	463	mercuric reductase; Validated	98.57
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.57
PRK06116	450	glutathione reductase; Validated	98.57
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.56
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.56
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.55
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.55
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.55
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.55
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.54
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.54
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.53
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.53
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.53
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.52
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.51
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.51
PLN02507	499	glutathione reductase	98.51
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.5
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.5
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.49
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.48
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.48
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.47
PRK14694	468	putative mercuric reductase; Provisional	98.46
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.45
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.45
PRK14727	479	putative mercuric reductase; Provisional	98.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.44
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.44
PLN02487	569	zeta-carotene desaturase	98.43
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.43
PRK13748	561	putative mercuric reductase; Provisional	98.43
PRK07846	451	mycothione reductase; Reviewed	98.43
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.41
PLN02852	491	ferredoxin-NADP+ reductase	98.41
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.4
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.39
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.39
PTZ00052	499	thioredoxin reductase; Provisional	98.39
PTZ00058	561	glutathione reductase; Provisional	98.38
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.38
PRK10262	321	thioredoxin reductase; Provisional	98.37
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.37
PLN02268	435	probable polyamine oxidase	98.37
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.35
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.35
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.34
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.32
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.32
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.32
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.32
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.32
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.31
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.3
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.3
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.3
PLN02546	558	glutathione reductase	98.3
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.3
PRK07208	479	hypothetical protein; Provisional	98.29
PRK12831	464	putative oxidoreductase; Provisional	98.28
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.27
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.26
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.23
PTZ00188	506	adrenodoxin reductase; Provisional	98.22
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.22
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.2
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.19
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.18
PRK13984	604	putative oxidoreductase; Provisional	98.15
PLN02576	496	protoporphyrinogen oxidase	98.15
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.14
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.13
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.11
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.1
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.1
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.1
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.03
PLN02676	487	polyamine oxidase	98.03
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.02
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.01
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.01
COG3349	485	Uncharacterized conserved protein [Function unknow	98.01
PLN02568	539	polyamine oxidase	97.97
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.95
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.94
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.94
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.94
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.93
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.91
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.9
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.89
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.88
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.87
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.87
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.86
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.82
PLN02529	738	lysine-specific histone demethylase 1	97.81
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	97.77
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.75
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.65
PRK13984	604	putative oxidoreductase; Provisional	97.65
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.63
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.6
PLN03000	881	amine oxidase	97.56
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.56
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.52
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.5
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.49
PLN02976	1713	amine oxidase	97.46
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.39
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.37
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.34
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.33
PLN02852	491	ferredoxin-NADP+ reductase	97.3
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.28
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	97.27
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	97.12
KOG2755	334	consensus Oxidoreductase [General function predict	96.51
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.49
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.44
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.36
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	96.13
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.98
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.67
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.41
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.1
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.76
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.65
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.52
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.5
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.35
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.25
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	94.25
COG4716	587	Myosin-crossreactive antigen [Function unknown]	94.18
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.09
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.09
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.86
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	93.85
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	93.74
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.58
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.48
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.44
PRK06567	1028	putative bifunctional glutamate synthase subunit b	93.35
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.89
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.85
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.74
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	92.53
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.39
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.35
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	92.21
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.19
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.01
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.95
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.93
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.87
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.84
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.75
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.72
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.59
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.47
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	91.47
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	91.16
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.16
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.12
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	90.99
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.96
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.96
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	90.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.61
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.6
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	90.44
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.37
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.35
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.35
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.32
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.28
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.03
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	89.82
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.78
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.72
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.58
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.5
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	89.26
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.22
PRK12548	289	shikimate 5-dehydrogenase; Provisional	88.83
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	88.79
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.55
PRK04148	134	hypothetical protein; Provisional	88.54
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	88.52
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	88.42
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.37
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.35
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	88.31
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	87.96
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	87.96
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	87.82
PRK08328	231	hypothetical protein; Provisional	87.77
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	87.7
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	87.69
PRK07208	479	hypothetical protein; Provisional	87.66
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	87.38
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	87.37
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	87.25
PRK06223	307	malate dehydrogenase; Reviewed	87.2
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	87.01
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	86.9
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.9
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	86.87
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	86.8
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	86.76
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	86.73
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.61
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	86.54
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	86.48
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.25
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	86.22
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.15
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	86.07
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.06
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	85.99
PRK08306	296	dipicolinate synthase subunit A; Reviewed	85.94
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	85.93
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	85.78
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.7
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	85.47
PLN02353	473	probable UDP-glucose 6-dehydrogenase	85.39
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.37
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	85.36
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	85.31
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.26
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.26
PRK08223	287	hypothetical protein; Validated	85.25
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	85.25
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	85.14
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	85.09
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	85.03
PRK05562	223	precorrin-2 dehydrogenase; Provisional	85.01
PRK10669	558	putative cation:proton antiport protein; Provision	84.86
PRK07417	279	arogenate dehydrogenase; Reviewed	84.85
PTZ00117	319	malate dehydrogenase; Provisional	84.79
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	84.75
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	84.59
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	84.57
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	84.44

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=100.00  E-value=5.6e-54  Score=353.42  Aligned_cols=306  Identities=64%  Similarity=1.003  Sum_probs=271.8

Q ss_pred             CccccccccCCCccCcccccccccccCCCCCCCccccccccCCCCcccCccccCCCCCCCCCCccCCCchhhhhHHHHHh
Q 020815            1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRR   80 (321)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~   80 (321)
                      |++.++..+.+.  +.+...++++++++.+.+...+..            .+...-..|+..|.|.|++++.++|+|++|
T Consensus         1 m~Ata~~ts~sa--~k~~~~~d~~~H~s~~~s~p~~~~------------l~~~~~s~d~s~F~FaPIrEStVSRaMTrR   66 (328)
T KOG2960|consen    1 MSATATATSTSA--SKPQRLFDSQLHGSALNSTPVTHC------------LSDIVKSEDWSDFKFAPIRESTVSRAMTRR   66 (328)
T ss_pred             CCccceeccccc--cCcccchhhhhhhhhhccCccccc------------ccccccccccccccccchhHHHHHHHHHHH
Confidence            445555444443  344467778888866554322111            011223346668999999999999999999


Q ss_pred             HhhhcccCCcccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCccc
Q 020815           81 YMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE  159 (321)
Q Consensus        81 ~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~  159 (321)
                      |+.++.+..+.||+|||+|.+||++||..++ +|.++|.|||..-.+||+.|.+|++++.++.+.+..-+|+++|++|+.
T Consensus        67 Yf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYed  146 (328)
T KOG2960|consen   67 YFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYED  146 (328)
T ss_pred             HHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCccc
Confidence            9999998888999999999999999999985 679999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-C----EEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815          160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-G----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (321)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~----~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V  234 (321)
                      .++|....|...|...++.+.++.+|++++..+.+++++... +    ++.||.++|.++.+++.++.|.+..+++++.|
T Consensus       147 egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~v  226 (328)
T KOG2960|consen  147 EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVV  226 (328)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEE
Confidence            999999999999999999999999999999999999998763 2    78899999999999999999999999999999


Q ss_pred             EEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeec
Q 020815          235 VSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISG  314 (321)
Q Consensus       235 I~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~  314 (321)
                      |-+||+.||++...++++.+++..+.+++++++++|..|+.++..+++++||+|+.|||++|+||.+||||+||+||+||
T Consensus       227 vS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV~~trevvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG  306 (328)
T KOG2960|consen  227 VSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIVIHTREVVPGMIVAGMEVAELDGANRMGPTFGAMMLSG  306 (328)
T ss_pred             EEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhhhhhhhccCceEEeeeeeeeccCCcccCcchhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhccc
Q 020815          315 QKAARM  320 (321)
Q Consensus       315 ~~~~~~  320 (321)
                      +|||++
T Consensus       307 ~kAaq~  312 (328)
T KOG2960|consen  307 VKAAQQ  312 (328)
T ss_pred             hhHHHH
Confidence            999874

>PLN02661 Putative thiazole synthesis

Probab=100.00  E-value=2.9e-52  Score=377.09  Aligned_cols=296  Identities=85%  Similarity=1.267  Sum_probs=257.6

Q ss_pred             ccccCCCCCCCccccccccCCCCcccCccccCCCCCCCCCCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHH
Q 020815           23 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAG  102 (321)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aG  102 (321)
                      ++|++.++.+....+...  ...+.......+.++||++.|.|.++++..+++.+.++|+.++....++||+|||||++|
T Consensus        27 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~is~~i~~~~~~~l~~~~~~DVlIVGaG~AG  104 (357)
T PLN02661         27 SSFAGVRLVTSVRAPLAD--ASAPARSSSSSSTAPYDLNNFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAG  104 (357)
T ss_pred             ccccCccccccccCCccc--cccccccccCCCCCCCccccccceechhhHhhccchHhHhhhhhhcccCCEEEECCHHHH
Confidence            778887777654333311  122222333467899999999999999999999999999999988889999999999999


Q ss_pred             HHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHc
Q 020815          103 LSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA  182 (321)
Q Consensus       103 l~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~  182 (321)
                      +.+|+.|++.+|++|+||||...+||+.|.++..+.....+....++++++|++|+..++|....+...+...|++++.+
T Consensus       105 l~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~e~~stLi~ka~~  184 (357)
T PLN02661        105 LSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAALFTSTIMSKLLA  184 (357)
T ss_pred             HHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchHHHHHHHHHHHHh
Confidence            99999999755899999999999999999998888877777778889999999998877777777888888899998887


Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCccccc
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVP  262 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~  262 (321)
                      +.|++++.++.+++++.+++++.|+.++|.....+..++.+.+...|+||.||+|||+.++.+..+++++..+++...+|
T Consensus       185 ~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~~~~~p  264 (357)
T PLN02661        185 RPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVP  264 (357)
T ss_pred             cCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCCccCCC
Confidence            78999999999999999999999999988655455443333455689999999999999999999999999999988899


Q ss_pred             CCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhccc
Q 020815          263 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM  320 (321)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  320 (321)
                      ++..+|.+..|+.++.++++++||+|++||++++++|.|||||+||+|++||+||||+
T Consensus       265 g~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~  322 (357)
T PLN02661        265 GMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHL  322 (357)
T ss_pred             CccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999986

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.2e-48  Score=320.62  Aligned_cols=252  Identities=44%  Similarity=0.775  Sum_probs=230.0

Q ss_pred             CCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh
Q 020815           62 TFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV  141 (321)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~  141 (321)
                      .+.|.++.+..++|.++++|+++.....+.||+||||||+||+|||+|+++ |+||+|+|++..+||+.|.+|++++++.
T Consensus         2 ~~~f~~~~E~~itraI~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~GGG~w~GGmlf~~iV   80 (262)
T COG1635           2 SFKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFGGGIWGGGMLFNKIV   80 (262)
T ss_pred             CccccchhhHHHHHHHHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccCCcccccccccceee
Confidence            357889999999999999999998877789999999999999999999999 9999999999999999999999999999


Q ss_pred             ccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCC
Q 020815          142 VRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       142 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~  220 (321)
                      .+.+..+.|+++|++|...++++...++.++...|..++. +.|++|+..+.|++++..++ +|.||.++|..++...  
T Consensus        81 v~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~--  157 (262)
T COG1635          81 VREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARAL-DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG--  157 (262)
T ss_pred             ecchHHHHHHHhCCcceecCCceEEecHHHHHHHHHHHHH-hcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--
Confidence            9999999999999999998887888889999999999988 67899999999999999887 8999999998766654  


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCC
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA  300 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~  300 (321)
                       .+.+..+++|++||.|||+.+.+.+...++...++  ..+++++..|.+..|+.++.++++++||+|++||++.+.+|.
T Consensus       158 -lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~--~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~  234 (262)
T COG1635         158 -LHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELG--IEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGL  234 (262)
T ss_pred             -cccCcceeeEEEEEeCCCCchHHHHHHHHhccccc--cccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCC
Confidence             44577899999999999998877655555554433  479999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeeeecchhccc
Q 020815          301 PRMGPTFGAMMISGQKAARM  320 (321)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~  320 (321)
                      |||||+||+|++||+|||++
T Consensus       235 pRMGPiFGgMllSGkkaAe~  254 (262)
T COG1635         235 PRMGPIFGGMLLSGKKAAEE  254 (262)
T ss_pred             cccCchhhhhhhchHHHHHH
Confidence            99999999999999999974

>TIGR00292 thiazole biosynthesis enzyme

Probab=100.00  E-value=5.1e-43  Score=309.21  Aligned_cols=245  Identities=42%  Similarity=0.737  Sum_probs=208.4

Q ss_pred             hhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHH
Q 020815           71 SIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL  150 (321)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l  150 (321)
                      ..++|.+.++|+.++....+|||+|||||++|+++|+.|++. |++|+||||+..+|++.|.++..+..........+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l   80 (254)
T TIGR00292         2 SKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL   80 (254)
T ss_pred             chhHHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence            357889999999998888899999999999999999999999 9999999999999999998888777766667778899


Q ss_pred             HHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC--EEEEEEEeecceecccCCCCCCCceE
Q 020815          151 DELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNV  228 (321)
Q Consensus       151 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (321)
                      +++|+++......+...+...+.+.|++++. +.|+++++++.++++..+++  ++.||.++|....++..   +.+..+
T Consensus        81 ~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~-e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~---~~d~~~  156 (254)
T TIGR00292        81 DEFGIRYEDEGDGYVVADSAEFISTLASKAL-QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL---HVDPLT  156 (254)
T ss_pred             HHCCCCeeeccCceEEeeHHHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCC---CCCCEE
Confidence            9999998776554445567888899998887 57999999999999998877  79999997743322221   123578


Q ss_pred             EEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCccee
Q 020815          229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFG  308 (321)
Q Consensus       229 i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~  308 (321)
                      ++|+.||+|||+.+.+.....+++......+.+++++++|.+..|+.++.++++++||+|++||++++++|.|||||+||
T Consensus       157 i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg  236 (254)
T TIGR00292       157 QRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFG  236 (254)
T ss_pred             EEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHH
Confidence            99999999999998776555555543333556799999999999999999999999999999999999999999999999


Q ss_pred             eeeeecchhccc
Q 020815          309 AMMISGQKAARM  320 (321)
Q Consensus       309 ~~~~~~~~~~~~  320 (321)
                      +|++||+||||+
T Consensus       237 ~m~~sg~~~a~~  248 (254)
T TIGR00292       237 GMLLSGKHVAEQ  248 (254)
T ss_pred             HHHHhhHHHHHH
Confidence            999999999986

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=100.00  E-value=1.1e-41  Score=301.54  Aligned_cols=247  Identities=37%  Similarity=0.667  Sum_probs=205.9

Q ss_pred             CCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH
Q 020815           67 PIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA  146 (321)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~  146 (321)
                      ++.+..+++.+.++|+.++....++||+|||||++|++||++|++. |++|+|||+...+||+.|.++..+.........
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~   80 (257)
T PRK04176          2 ELDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEA   80 (257)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccCccccccccchHHH
Confidence            3567788999999999998888899999999999999999999999 999999999999998888777766666666677


Q ss_pred             HHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCC
Q 020815          147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       147 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                      .++++++|++|.......+..+...+...|.+++. +.|++++++++|+++..+++ ++.|+.++|..+..+.   .+.+
T Consensus        81 ~~~l~~~gv~~~~~~~g~~~vd~~~l~~~L~~~A~-~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g---~~~~  156 (257)
T PRK04176         81 DEILDEFGIRYKEVEDGLYVADSVEAAAKLAAAAI-DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG---LHVD  156 (257)
T ss_pred             HHHHHHCCCCceeecCcceeccHHHHHHHHHHHHH-HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC---CCCC
Confidence            88999999998764332334466788888888887 57999999999999988766 8999988763222111   1123


Q ss_pred             ceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCc
Q 020815          226 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP  305 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~  305 (321)
                      ..+++||.||+|||+.+.......++..  .....+++++++|.+..|+.++.++++++||+|++||++++++|.|||||
T Consensus       157 ~~~i~Ak~VI~ATG~~a~v~~~l~~~~~--~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~  234 (257)
T PRK04176        157 PLTIEAKAVVDATGHDAEVVSVLARKGP--ELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGP  234 (257)
T ss_pred             cEEEEcCEEEEEeCCCcHHHHHHHHHcC--CcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCc
Confidence            4789999999999988876654444443  22346899999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeecchhccc
Q 020815          306 TFGAMMISGQKAARM  320 (321)
Q Consensus       306 ~~~~~~~~~~~~~~~  320 (321)
                      +||+|++||+|||++
T Consensus       235 ~fg~m~~sg~~~a~~  249 (257)
T PRK04176        235 IFGGMLLSGKKVAEL  249 (257)
T ss_pred             hhHhHHHhHHHHHHH
Confidence            999999999999986

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=100.00  E-value=3e-41  Score=281.85  Aligned_cols=229  Identities=44%  Similarity=0.739  Sum_probs=184.9

Q ss_pred             hHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHc
Q 020815           74 SREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL  153 (321)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~  153 (321)
                      +|.+.++|++++....++||+||||||+|++||++|++. |+||+|+|++..+||..|.+|.+++++..+.+...+|+++
T Consensus         1 sraI~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el   79 (230)
T PF01946_consen    1 SRAIIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL   79 (230)
T ss_dssp             HHHHHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC
Confidence            367888999888887899999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815          154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (321)
Q Consensus       154 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~  232 (321)
                      |++|...+++++..++.++...|..++. +.|++++..+.|+++...+ ++|.|+.++|..+.+..-   ..+..+++||
T Consensus        80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl---HvDPl~i~ak  155 (230)
T PF01946_consen   80 GIPYEEYGDGYYVADSVEFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL---HVDPLTIRAK  155 (230)
T ss_dssp             T---EE-SSEEEES-HHHHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-----T-B-EEEEES
T ss_pred             CceeEEeCCeEEEEcHHHHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc---CCCcceEEEe
Confidence            9999998888888899999999999998 5999999999999999887 899999999987766521   2356899999


Q ss_pred             eEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcce
Q 020815          233 VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF  307 (321)
Q Consensus       233 ~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~  307 (321)
                      +||.|||+.+++.+...++.........+++++.+|.+..|+.++.++++++||+|++||++++.+|.|||||+|
T Consensus       156 ~ViDaTGHda~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV~PGL~v~GMa~~av~G~~RMGPiF  230 (230)
T PF01946_consen  156 VVIDATGHDAEVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREVYPGLYVAGMAANAVDGGPRMGPIF  230 (230)
T ss_dssp             EEEE---SSSSSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEEETTEEE-THHHHHHHT-EB-SSB-
T ss_pred             EEEeCCCCchHHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccccCCEEEechhhHhhcCCCCCCCCC
Confidence            999999999999998899888777677899999999999999999999999999999999999999999999998

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.75  E-value=9.8e-18  Score=157.50  Aligned_cols=166  Identities=21%  Similarity=0.359  Sum_probs=104.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--------CccccCc----------------ccchhhh---cc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--------GGAWLGG----------------QLFSAMV---VR  143 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--------g~~~~~g----------------~~~~~~~---~~  143 (321)
                      |||+|||||+||+.||+.|++. |.+|+|+||+..+|        |.|-...                ......+   ..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~   79 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP   79 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence            7999999999999999999999 99999999998875        2221100                0111111   11


Q ss_pred             chHHHHHHHcCCCcccCC-C--eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815          144 KPAHIFLDELGIDYDEQD-N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       144 ~~~~~~l~~~g~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~  220 (321)
                      .+.+.|++++|+++.... .  |+....+..+.+.|++++. +.|++++++++|.+|..+++.+..|.+.          
T Consensus        80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~f~v~~~----------  148 (409)
T PF03486_consen   80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELK-RLGVEIHFNTRVKSIEKKEDGVFGVKTK----------  148 (409)
T ss_dssp             HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHH-HHT-EEE-S--EEEEEEETTEEEEEEET----------
T ss_pred             HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHH-HcCCEEEeCCEeeeeeecCCceeEeecc----------
Confidence            246789999999886542 3  2333457788899888887 6899999999999999999988888873          


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCCC--c--chhhhhhhhcCC--cccccCCceeecccc
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGPF--G--ATGVKRLKSIGM--IEEVPGMKALDMNSA  272 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~~--~--~~~~~~~~~~g~--~~~~~~~~~~~~~~~  272 (321)
                          +..++.||.||+|+||.+.+  +  .++++.+..+||  +++.|.++++.....
T Consensus       149 ----~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~  202 (409)
T PF03486_consen  149 ----NGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEP  202 (409)
T ss_dssp             ----TTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HH
T ss_pred             ----CcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecch
Confidence                23789999999999987632  2  267888999988  888999999877643

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.74  E-value=5.8e-17  Score=147.17  Aligned_cols=167  Identities=16%  Similarity=0.229  Sum_probs=125.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc---------ccchhhh-----------------cc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---------QLFSAMV-----------------VR  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g---------~~~~~~~-----------------~~  143 (321)
                      .+||+|||||+||+.||..+++. |.+|+|||+++.+|-.....|         ..++.++                 ..
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            58999999999999999999999 999999999988763221111         1111111                 11


Q ss_pred             chHHHHHHHcCCCcccCCC---eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815          144 KPAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       144 ~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~  220 (321)
                      .+.+.|.+.+|+.+.....   |+..+.+..+++.|+.++. +.||+++.+++|.++..++. ...+.+.+         
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-~~gV~i~~~~~v~~v~~~~~-~f~l~t~~---------  150 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELE-ALGVTIRTRSRVSSVEKDDS-GFRLDTSS---------  150 (408)
T ss_pred             HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHH-HcCcEEEecceEEeEEecCc-eEEEEcCC---------
Confidence            2467889999999876533   3334678899999999997 78999999999999988773 33444432         


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCCC--cc--hhhhhhhhcCC--cccccCCceeeccccc
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGPF--GA--TGVKRLKSIGM--IEEVPGMKALDMNSAE  273 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~~--~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~  273 (321)
                           +.+++||.+|+|+||.+-+  +.  .+++.+...|+  .+..|.++++......
T Consensus       151 -----g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~  204 (408)
T COG2081         151 -----GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESF  204 (408)
T ss_pred             -----CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHH
Confidence                 2489999999999987643  33  46788888887  8889999999877544

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.67  E-value=6.9e-16  Score=152.87  Aligned_cols=145  Identities=23%  Similarity=0.270  Sum_probs=104.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc--------------------------hh--
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF--------------------------SA--  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~--------------------------~~--  139 (321)
                      .++||||||+|.||++||+.+++. |++|+||||....++++.. .|.+.                          +.  
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l  106 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA  106 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence            368999999999999999999999 9999999998766554321 11110                          00  


Q ss_pred             --hhcc--chHHHHHHHcCCCcccCCC--eE------------------EEe-----cHHHHHHHHHHHHHcCCCcEEEc
Q 020815          140 --MVVR--KPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN  190 (321)
Q Consensus       140 --~~~~--~~~~~~l~~~g~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~  190 (321)
                        .+.+  ...++||+++|++|+...+  +.                  ...     .+..+...|.+++. +.|+++++
T Consensus       107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~  185 (617)
T PTZ00139        107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSL-KYDCNFFI  185 (617)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHH-hCCCEEEe
Confidence              0000  1356899999999965321  10                  000     23567788888887 57999999


Q ss_pred             CceEEEEEE-ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          191 AVAAEDLIV-KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       191 ~~~v~~l~~-~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      ++.+++|+. ++++|.||...+      .   .+++...+.||.||+||||++..
T Consensus       186 ~~~~~~Li~~~~g~v~Gv~~~~------~---~~g~~~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        186 EYFALDLIMDEDGECRGVIAMS------M---EDGSIHRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             ceEEEEEEECCCCEEEEEEEEE------C---CCCeEEEEECCcEEEeCCCCccc
Confidence            999999998 678999998632      1   12345689999999999998743

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.67  E-value=9.7e-16  Score=151.95  Aligned_cols=145  Identities=23%  Similarity=0.287  Sum_probs=104.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc--------------------------hh--
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF--------------------------SA--  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~--------------------------~~--  139 (321)
                      .++||||||+|.||++||+.+++. |++|+||||....++++.. .|.+.                          ++  
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l  127 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA  127 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence            368999999999999999999999 9999999998766554321 11110                          00  


Q ss_pred             --hhc--cchHHHHHHHcCCCcccCCC--eE------------------EEe-----cHHHHHHHHHHHHHcCCCcEEEc
Q 020815          140 --MVV--RKPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN  190 (321)
Q Consensus       140 --~~~--~~~~~~~l~~~g~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~  190 (321)
                        .+.  ....++||+++|++|++..+  +.                  ...     .+..+...|++++. +.|++++.
T Consensus       128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~  206 (635)
T PLN00128        128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAM-KHNTQFFV  206 (635)
T ss_pred             HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHH-hCCCEEEE
Confidence              000  11356899999999975321  10                  000     24567788888876 57999999


Q ss_pred             CceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          191 AVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       191 ~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      ++.+++|+.+ +++|.|+.+.+.         .+++...+.||.||+||||++..
T Consensus       207 ~~~~~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        207 EYFALDLIMDSDGACQGVIALNM---------EDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             eeEEEEEEEcCCCEEEEEEEEEc---------CCCeEEEEEcCeEEECCCCCccc
Confidence            9999999987 689999987431         12345789999999999998743

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.66  E-value=2.2e-15  Score=148.17  Aligned_cols=143  Identities=22%  Similarity=0.337  Sum_probs=103.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccch-----------------hh------hcc--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLFS-----------------AM------VVR--  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~~-----------------~~------~~~--  143 (321)
                      ++||||||+|.||++||+.+++. |.+|+||||....++++. .+|.+..                 ..      +.+  
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~   83 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD   83 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence            68999999999999999999999 999999999876554432 2221110                 00      000  


Q ss_pred             ---------chHHHHHHHcCCCcccCCCe------------EEEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          144 ---------KPAHIFLDELGIDYDEQDNY------------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       144 ---------~~~~~~l~~~g~~~~~~~~~------------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                               ...++||+++|++|+...+.            ....     .+..+...|.+++. +.|+++++++.+++|
T Consensus        84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~~~~L  162 (566)
T PRK06452         84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTS-GLNVDFYNEWFSLDL  162 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHH-hCCCEEEeCcEEEEE
Confidence                     13468999999999753211            0111     24567778888776 469999999999999


Q ss_pred             EEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       198 ~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +.++++|.||.+.+.         .+++...++||.||+||||++.
T Consensus       163 i~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~  199 (566)
T PRK06452        163 VTDNKKVVGIVAMQM---------KTLTPFFFKTKAVVLATGGMGM  199 (566)
T ss_pred             EEECCEEEEEEEEEC---------CCCeEEEEEeCeEEECCCcccc
Confidence            999999999987531         1123468999999999999873

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.66  E-value=2.1e-15  Score=149.16  Aligned_cols=145  Identities=23%  Similarity=0.283  Sum_probs=102.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc--------h---h----h------hcc---
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------S---A----M------VVR---  143 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~--------~---~----~------~~~---  143 (321)
                      .++||||||+|.||++||+.|++. |.+|+||||....++++. ..|.+.        +   .    .      +.+   
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l   89 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA   89 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence            368999999999999999999999 999999999865544431 111110        0   0    0      000   


Q ss_pred             --------chHHHHHHHcCCCcccCCC--eEE------------------E-----ecHHHHHHHHHHHHHcCCCcEEEc
Q 020815          144 --------KPAHIFLDELGIDYDEQDN--YVV------------------I-----KHAALFTSTIMSKLLARPNVKLFN  190 (321)
Q Consensus       144 --------~~~~~~l~~~g~~~~~~~~--~~~------------------~-----~~~~~~~~~l~~~~~~~~gv~i~~  190 (321)
                              ...++||+++|++|+...+  +..                  .     ..+..+...|++.+. +.|+++++
T Consensus        90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gi~i~~  168 (598)
T PRK09078         90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSL-KHNAEFFI  168 (598)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHh-hcCCEEEE
Confidence                    1346889999999865321  100                  0     023567788888886 57999999


Q ss_pred             CceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          191 AVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       191 ~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      ++.+++|+.++ ++|.||.+.+.         .++....+.|+.||+||||++..
T Consensus       169 ~~~v~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        169 EYFALDLIMDDGGVCRGVVAWNL---------DDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             eEEEEEEEEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEECCCCCccc
Confidence            99999999875 78999987321         12345689999999999998743

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.66  E-value=2.6e-15  Score=148.04  Aligned_cols=143  Identities=20%  Similarity=0.322  Sum_probs=103.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc--------------------------hh---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------------------------SA---  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~--------------------------~~---  139 (321)
                      ++||||||+|.||++||+.+++. |.+|+||||....+|++. .+|.+.                          +.   
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v   85 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            68999999999999999999998 999999999866554332 222110                          00   


Q ss_pred             -hhc--cchHHHHHHHcCCCcccCCC--eE-----------------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCc
Q 020815          140 -MVV--RKPAHIFLDELGIDYDEQDN--YV-----------------VI-----KHAALFTSTIMSKLLARPNVKLFNAV  192 (321)
Q Consensus       140 -~~~--~~~~~~~l~~~g~~~~~~~~--~~-----------------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~  192 (321)
                       .+.  ....++||+++|++|+...+  +.                 ..     ..+..+...|++++. +.++++++++
T Consensus        86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~  164 (588)
T PRK08958         86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSEW  164 (588)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhh-hcCCEEEeCc
Confidence             000  12356899999999975311  10                 00     024567788888776 6799999999


Q ss_pred             eEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          193 AAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       193 ~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+++|+.+ +++|.||...+.         .+++...+.|+.||+||||++.
T Consensus       165 ~~~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        165 YALDLVKNQDGAVVGCTAICI---------ETGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             EEEEEEECCCCEEEEEEEEEc---------CCCcEEEEEcCeEEECCCCccc
Confidence            99999985 789999987421         1234567999999999999873

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.65  E-value=3.6e-15  Score=142.16  Aligned_cols=141  Identities=19%  Similarity=0.294  Sum_probs=101.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc------------hh----------------h
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF------------SA----------------M  140 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~------------~~----------------~  140 (321)
                      ++||||||+|.||++||+.++ . |.+|+||||....++++.. ++.+.            ..                +
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~-G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~   81 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-K-DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL   81 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-c-CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            689999999999999999984 6 8999999999877665432 11110            00                0


Q ss_pred             hc-cchHHHHHHHcCCCcccCCCeE-----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE
Q 020815          141 VV-RKPAHIFLDELGIDYDEQDNYV-----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR  203 (321)
Q Consensus       141 ~~-~~~~~~~l~~~g~~~~~~~~~~-----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~  203 (321)
                      .. ....++||.++|++|+......           ..     ..+..+...|++++.++.|+++++++.+++|+.++++
T Consensus        82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~  161 (433)
T PRK06175         82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT  161 (433)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence            00 1235689999999986542110           00     1235677888888875679999999999999988889


Q ss_pred             EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          204 VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       204 v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      |.||....           +++..++.||.||+|||+++.
T Consensus       162 v~Gv~~~~-----------~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        162 CIGAICLK-----------DNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             EEEEEEEE-----------CCcEEEEEcCeEEEccCcccc
Confidence            99977531           112357999999999999764

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.65  E-value=1.7e-15  Score=137.17  Aligned_cols=205  Identities=24%  Similarity=0.332  Sum_probs=142.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC--------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--------  155 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~--------  155 (321)
                      .++||+||||||+||+||++|.+.     -.++|+|+||...+||-...+..+ +....+. .+..+++.+.        
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi-ep~aldE-L~P~wke~~apl~t~vT~  152 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI-EPGALDE-LLPDWKEDGAPLNTPVTS  152 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceee-ccchhhh-hCcchhhcCCcccccccc
Confidence            369999999999999999998651     168999999999999877654432 1111110 0000111111        


Q ss_pred             ------------------CcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceec
Q 020815          156 ------------------DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSM  216 (321)
Q Consensus       156 ------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~  216 (321)
                                        +++..++|.+  .-..++++|-+++. +.|++|+.+..+.+++++ ++.|.|+.+++..+..
T Consensus       153 d~~~fLt~~~~i~vPv~~pm~NhGNYvv--~L~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k  229 (621)
T KOG2415|consen  153 DKFKFLTGKGRISVPVPSPMDNHGNYVV--SLGQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK  229 (621)
T ss_pred             cceeeeccCceeecCCCcccccCCcEEE--EHHHHHHHHHHHHH-hhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence                              1222233332  34678889888887 799999999999999985 6899999998866655


Q ss_pred             ccCCCCCCC-ceEEEcCeEEEcCCCCCCCcchhhhhhhhc---CCcccccCCceeecccccchhhccccccccccccccc
Q 020815          217 NHDTQSCMD-PNVMEAKVVVSSCGHDGPFGATGVKRLKSI---GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGM  292 (321)
Q Consensus       217 ~~~~~~~g~-~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~  292 (321)
                      +...+.+.+ +.+++|+..|.|.|.+|++...-+.++.-.   ...-+-.+.+++|..+.+        .+.||.+..  
T Consensus       230 ~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~--------~~~pG~v~H--  299 (621)
T KOG2415|consen  230 DGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPE--------NHNPGEVAH--  299 (621)
T ss_pred             CCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChh--------hcCCcceee--
Confidence            544443332 457999999999999999887766665422   223344577888877766        567886555  


Q ss_pred             chhhcCCCCCCCcceeeeee
Q 020815          293 EVAEIDGAPRMGPTFGAMMI  312 (321)
Q Consensus       293 ~~~~~~g~~~~~~~~~~~~~  312 (321)
                          .-|||..-.+||+-++
T Consensus       300 ----T~GwPl~~~tYGGsFl  315 (621)
T KOG2415|consen  300 ----TLGWPLDNDTYGGSFL  315 (621)
T ss_pred             ----eccCcccCCccCceeE
Confidence                6699999999987554

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.64  E-value=5e-15  Score=146.01  Aligned_cols=147  Identities=22%  Similarity=0.307  Sum_probs=104.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccC-cccc------------------------hhh--
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLG-GQLF------------------------SAM--  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~-g~~~------------------------~~~--  140 (321)
                      .++||||||+|.||++||+.|++. +|.+|+||||....++++... |.+.                        +..  
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v   82 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV   82 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence            368999999999999999999985 158999999987666544322 2110                        000  


Q ss_pred             --hc--cchHHHHHHHcCCCcccCCC--eEE----------E----e-cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815          141 --VV--RKPAHIFLDELGIDYDEQDN--YVV----------I----K-HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (321)
Q Consensus       141 --~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~----~-~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~  199 (321)
                        +.  ....++||+++|++|+...+  +..          .    . .+..+...|++++.+..+++++.++.+++|+.
T Consensus        83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~  162 (582)
T PRK09231         83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV  162 (582)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence              00  01356899999999975322  100          0    1 23567788888877556899999999999999


Q ss_pred             ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      ++++|.|+....      .   .+++...++|+.||+|||+++..
T Consensus       163 ~~g~v~Gv~~~~------~---~~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        163 DDGHVRGLVAMN------M---MEGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             eCCEEEEEEEEE------c---CCCcEEEEECCEEEECCCCCcCC
Confidence            899999987632      0   11234689999999999998854

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.64  E-value=2.3e-15  Score=139.83  Aligned_cols=175  Identities=25%  Similarity=0.439  Sum_probs=127.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCcccchh----------------------------hhc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFSA----------------------------MVV  142 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~-gg~~~~~g~~~~~----------------------------~~~  142 (321)
                      ||+|||+|.|||++|+.|++.  .+|+||-|.... +.+.|.+|++...                            .+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv   86 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV   86 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            999999999999999999885  899999998765 4455665543211                            111


Q ss_pred             c--chHHHHHHHcCCCcccCCC--eEEEe---------------cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-
Q 020815          143 R--KPAHIFLDELGIDYDEQDN--YVVIK---------------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-  202 (321)
Q Consensus       143 ~--~~~~~~l~~~g~~~~~~~~--~~~~~---------------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-  202 (321)
                      .  ...++||.++|++|+++.+  |.+..               -++.+++.|++++++.++|++++++.+.+|+.+++ 
T Consensus        87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~  166 (518)
T COG0029          87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI  166 (518)
T ss_pred             HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence            1  2457899999999998753  33311               23678899999998889999999999999999998 


Q ss_pred             EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcch----------hhh-------hhhhcCC--------
Q 020815          203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT----------GVK-------RLKSIGM--------  257 (321)
Q Consensus       203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~----------~~~-------~~~~~g~--------  257 (321)
                      .+.|+.+.+.          .++..+++|+.||+||||.|.+...          ++.       .+.+++|        
T Consensus       167 ~~~Gv~~~~~----------~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l  236 (518)
T COG0029         167 GVAGVLVLNR----------NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTAL  236 (518)
T ss_pred             eEeEEEEecC----------CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeecccee
Confidence            5558888531          0134789999999999998854321          111       1233443        


Q ss_pred             ----------cccccCCceeecccccchhhc
Q 020815          258 ----------IEEVPGMKALDMNSAEDAIVR  278 (321)
Q Consensus       258 ----------~~~~~~~~~~~~~~~~~~~~~  278 (321)
                                .+.+.|++++..+..+.+|+.
T Consensus       237 ~~~~~~~~LiSEAVRGEGA~L~~~~GeRFm~  267 (518)
T COG0029         237 YIPQRRAFLISEAVRGEGAILVNEDGERFMP  267 (518)
T ss_pred             cCCCCccceeehhhhcCccEEECCCCCcccc
Confidence                      456678888888888888884

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.63  E-value=8.5e-15  Score=142.32  Aligned_cols=142  Identities=23%  Similarity=0.379  Sum_probs=101.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCccc--------------------chhhh-------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL--------------------FSAMV-------  141 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~--------------------~~~~~-------  141 (321)
                      ++||||||+|.+|++||+++++. |.+|+||||....||++. ..+.+                    +...+       
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~  139 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN  139 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence            68999999999999999999999 999999999988776532 11111                    00000       


Q ss_pred             ----------ccchHHHHHHHcCCCcccCC--------CeEEE----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815          142 ----------VRKPAHIFLDELGIDYDEQD--------NYVVI----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (321)
Q Consensus       142 ----------~~~~~~~~l~~~g~~~~~~~--------~~~~~----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~  199 (321)
                                .....++||+++|++|....        .....    .....+...|.+.+. +.|+++++++++++|+.
T Consensus       140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~~  218 (506)
T PRK06481        140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQ-ERKIPLFVNADVTKITE  218 (506)
T ss_pred             CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHH-HcCCeEEeCCeeEEEEe
Confidence                      01134678888998775321        00000    123456777877776 67999999999999988


Q ss_pred             ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++++|.+|.+..          .+++..++.||.||+|+|+++.
T Consensus       219 ~~g~V~Gv~~~~----------~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        219 KDGKVTGVKVKI----------NGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             cCCEEEEEEEEe----------CCCeEEEEecCeEEEeCCCccc
Confidence            888999988742          1113367999999999998764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.63  E-value=8.7e-15  Score=145.54  Aligned_cols=145  Identities=20%  Similarity=0.218  Sum_probs=99.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-Ccc-ccCcccc---------------------------hh
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGA-WLGGQLF---------------------------SA  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~-~~~g~~~---------------------------~~  139 (321)
                      .++||||||+|.||++||+.|++. |.+|+||||...++ +++ +.+|.+.                           +.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~  112 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRARE  112 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCH
Confidence            468999999999999999999999 99999999876554 222 2222110                           00


Q ss_pred             ----hhc--cchHHHHHHHcCCCcccCCC--eEE----------Ee-----cHHHHH----HHHHHHHHcCCCcEEEcCc
Q 020815          140 ----MVV--RKPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFT----STIMSKLLARPNVKLFNAV  192 (321)
Q Consensus       140 ----~~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~~-----~~~~~~----~~l~~~~~~~~gv~i~~~~  192 (321)
                          .+.  ....++||+++|++|+....  +..          ..     .+..+.    +.|.+.+. +.|+++++++
T Consensus       113 ~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~-~~gV~i~~~t  191 (640)
T PRK07573        113 ANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIA-AGTVKMYTRT  191 (640)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHH-hcCCEEEece
Confidence                000  11456899999999975321  100          00     122333    44444554 6799999999


Q ss_pred             eEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          193 AAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       193 ~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      .+++|+.++++|.||.+.+.         .++....+.||.||+||||++..
T Consensus       192 ~v~~Li~d~g~V~GV~~~~~---------~~g~~~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        192 EMLDLVVVDGRARGIVARNL---------VTGEIERHTADAVVLATGGYGNV  234 (640)
T ss_pred             EEEEEEEeCCEEEEEEEEEC---------CCCcEEEEECCEEEECCCCcccC
Confidence            99999998899999987531         12234679999999999998743

>PLN02815 L-aspartate oxidase

Probab=99.63  E-value=4.4e-15  Score=146.09  Aligned_cols=145  Identities=21%  Similarity=0.263  Sum_probs=103.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc------------------------hh----
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF------------------------SA----  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~------------------------~~----  139 (321)
                      .++||||||+|.|||+||+.+++. | +|+||||....+|++. .+|.+.                        +.    
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~  105 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR  105 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence            368999999999999999999998 8 9999999887766442 222110                        00    


Q ss_pred             hhc--cchHHHHHHHcCCCcccCCC--eE----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815          140 MVV--RKPAHIFLDELGIDYDEQDN--YV----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (321)
Q Consensus       140 ~~~--~~~~~~~l~~~g~~~~~~~~--~~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~  200 (321)
                      .+.  ....++||+++|++|+....  +.          ..     ..+..+...|++++.+..|+++++++.+++|+.+
T Consensus       106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~  185 (594)
T PLN02815        106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS  185 (594)
T ss_pred             HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence            000  01356899999999975321  11          01     1245677888888876679999999999999986


Q ss_pred             C-C---EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          201 G-G---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       201 ~-~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      + +   +|.|+.+.+.         .++....+.||.||+||||++..
T Consensus       186 ~~g~~~~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~g~~  224 (594)
T PLN02815        186 QDGGSIVCHGADVLDT---------RTGEVVRFISKVTLLASGGAGHI  224 (594)
T ss_pred             cCCCccEEEEEEEEEc---------CCCeEEEEEeceEEEcCCcceee
Confidence            3 3   3889887421         12344678999999999998743

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.63  E-value=9.8e-15  Score=143.69  Aligned_cols=146  Identities=23%  Similarity=0.327  Sum_probs=105.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc-cCcccc------------------------h----h
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW-LGGQLF------------------------S----A  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~-~~g~~~------------------------~----~  139 (321)
                      ++||||||+|+||+.||+.+++. +|++|+||||....++++. .+|.+.                        +    .
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~   82 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence            68999999999999999999975 2589999999877665542 222110                        0    0


Q ss_pred             hhc--cchHHHHHHHcCCCcccCCC--eEE----------E-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815          140 MVV--RKPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (321)
Q Consensus       140 ~~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~  200 (321)
                      .+.  ....++||+++|++|+...+  +..          .     ..+..+.+.|++++.+..+++++.++.+++|+.+
T Consensus        83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~  162 (580)
T TIGR01176        83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD  162 (580)
T ss_pred             HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence            001  12456899999999975421  100          0     1346788888888875578999999999999999


Q ss_pred             CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +++|.|+...+.         .+++...+.|+.||+|||+++..
T Consensus       163 ~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       163 DGRVCGLVAIEM---------AEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             CCEEEEEEEEEc---------CCCcEEEEecCEEEEcCCCCccc
Confidence            999999986421         12344689999999999998743

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.63  E-value=8.2e-15  Score=144.51  Aligned_cols=144  Identities=23%  Similarity=0.332  Sum_probs=101.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCcccc------------hh----------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLF------------SA----------------  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~-~~~g~~~------------~~----------------  139 (321)
                      ++||||||+|.||++||+.|++. +|.+|+||||....++++ +.+|.+.            ..                
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~   82 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD   82 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence            68999999999999999999975 148999999987655433 2222110            00                


Q ss_pred             ---hhc--cchHHHHHHHcCCCcccCCCe--E----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          140 ---MVV--RKPAHIFLDELGIDYDEQDNY--V----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       140 ---~~~--~~~~~~~l~~~g~~~~~~~~~--~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                         .+.  ....++||+++|++|+...+.  .          ..     ..+..+...|.+.+. +.|+++++++.+++|
T Consensus        83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~t~v~~L  161 (575)
T PRK05945         83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLR-RYGVTIYDEWYVMRL  161 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHh-hCCCEEEeCcEEEEE
Confidence               000  013457889999999764211  1          00     123567788888886 579999999999999


Q ss_pred             EEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       198 ~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +.++++|.|+.....         .+++...+.|+.||+|||+++.
T Consensus       162 ~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        162 ILEDNQAKGVVMYHI---------ADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             EEECCEEEEEEEEEc---------CCCeEEEEECCEEEECCCCCcC
Confidence            988999999876320         1123457999999999999874

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.62  E-value=5.7e-15  Score=145.72  Aligned_cols=144  Identities=22%  Similarity=0.314  Sum_probs=102.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC---CeEEEEeccCCCCCcccc-Ccccc-----------hh---------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN---IQIAIIEQSVSPGGGAWL-GGQLF-----------SA---------------  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G---~~V~liEk~~~~gg~~~~-~g~~~-----------~~---------------  139 (321)
                      ++||||||+|.||++||+.|++. |   .+|+||||....++++.. +|.+.           ..               
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~   83 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ   83 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence            68999999999999999999998 7   899999998766654322 11110           00               


Q ss_pred             ----hhc--cchHHHHHHHcCCCcccCCC--eE----------EEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815          140 ----MVV--RKPAHIFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED  196 (321)
Q Consensus       140 ----~~~--~~~~~~~l~~~g~~~~~~~~--~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (321)
                          .+.  ....++||+++|++|+...+  +.          ...     .+..+.+.|++++.+..++++++++.+++
T Consensus        84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~  163 (577)
T PRK06069         84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTS  163 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEE
Confidence                000  01346899999999975422  11          111     13457788888887557999999999999


Q ss_pred             EEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       197 l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      |+.++++|.|+.+.+.         .+++...+.|+.||+|||+++.
T Consensus       164 Li~~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VIlATGG~~~  201 (577)
T PRK06069        164 LIVENGVFKGVTAIDL---------KRGEFKVFQAKAGIIATGGAGR  201 (577)
T ss_pred             EEEECCEEEEEEEEEc---------CCCeEEEEECCcEEEcCchhcc
Confidence            9998999999876321         1123357899999999999863

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.62  E-value=8e-15  Score=139.33  Aligned_cols=141  Identities=26%  Similarity=0.363  Sum_probs=95.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-ccc----------------chh---------------
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQL----------------FSA---------------  139 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~----------------~~~---------------  139 (321)
                      ||||||+|.+|++||+.|++. |.+|+||||....||++... +.+                ...               
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   79 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDP   79 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-H
T ss_pred             CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeeccccccccc
Confidence            899999999999999999999 99999999998877654221 110                000               


Q ss_pred             ----hhc--cchHHHHHHHcCCCcccC--------------CCeEEEe-----------cHHHHHHHHHHHHHcCCCcEE
Q 020815          140 ----MVV--RKPAHIFLDELGIDYDEQ--------------DNYVVIK-----------HAALFTSTIMSKLLARPNVKL  188 (321)
Q Consensus       140 ----~~~--~~~~~~~l~~~g~~~~~~--------------~~~~~~~-----------~~~~~~~~l~~~~~~~~gv~i  188 (321)
                          .+.  ....++||+++|++|...              ..+....           ....+...|.+.++ +.+++|
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~gv~i  158 (417)
T PF00890_consen   80 DLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAE-EAGVDI  158 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHH-HTTEEE
T ss_pred             chhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHh-hcCeee
Confidence                000  013568899999988771              0101111           34567788888876 678999


Q ss_pred             EcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          189 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       189 ~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++++++++|+.++++|+||.....         .++...+|+|+.||+|||+++.
T Consensus       159 ~~~~~~~~Li~e~g~V~Gv~~~~~---------~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  159 RFNTRVTDLITEDGRVTGVVAENP---------ADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             EESEEEEEEEEETTEEEEEEEEET---------TTCEEEEEEESEEEE----BGG
T ss_pred             eccceeeeEEEeCCceeEEEEEEC---------CCCeEEEEeeeEEEeccCcccc
Confidence            999999999999999999998631         2234568999999999998875

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.61  E-value=6.9e-15  Score=144.01  Aligned_cols=141  Identities=24%  Similarity=0.435  Sum_probs=101.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccc-------------h-----------h----
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------S-----------A----  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~-------------~-----------~----  139 (321)
                      .++||||||+|.||++||+.++ . |.+|+||||....+|++ +.+|.+.             .           .    
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~   85 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR   85 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            4799999999999999999985 5 89999999998766654 2222211             0           0    


Q ss_pred             hhc--cchHHHHHHHcCCCcccCCC-eE----------EEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815          140 MVV--RKPAHIFLDELGIDYDEQDN-YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG  201 (321)
Q Consensus       140 ~~~--~~~~~~~l~~~g~~~~~~~~-~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~  201 (321)
                      .+.  ....++||.++|++|+..+. +.          ...     .+..+...|.+.+.+..|+++++++.+++|+.++
T Consensus        86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~  165 (553)
T PRK07395         86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEP  165 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecC
Confidence            000  01346899999999975421 10          011     2456778888888656799999999999999873


Q ss_pred             --CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          202 --GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       202 --~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                        ++|.||.+..           ++....+.|+.||+||||++
T Consensus       166 ~~g~v~Gv~~~~-----------~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        166 ETGRCQGISLLY-----------QGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             CCCEEEEEEEEE-----------CCeEEEEEcCEEEEcCCCCc
Confidence              7899997642           12335689999999999975

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.61  E-value=1.8e-14  Score=138.86  Aligned_cols=142  Identities=17%  Similarity=0.252  Sum_probs=100.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC--CCCccccCccc--------------------chhhh------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAWLGGQL--------------------FSAMV------  141 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~--~gg~~~~~g~~--------------------~~~~~------  141 (321)
                      ++||||||+|++|++||++|++. |.+|+||||...  .||++...+.+                    +..+.      
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR   82 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence            68999999999999999999999 999999999864  45543221111                    00000      


Q ss_pred             -----------ccchHHHHHHHcCCCcccCCC---------eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815          142 -----------VRKPAHIFLDELGIDYDEQDN---------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG  201 (321)
Q Consensus       142 -----------~~~~~~~~l~~~g~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~  201 (321)
                                 .....++|+.++|++|.....         .........+...|.+.+. +.|++++++++|++|+.++
T Consensus        83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~-~~gv~i~~~t~v~~l~~~~  161 (466)
T PRK08274         83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAE-RLGVEIRYDAPVTALELDD  161 (466)
T ss_pred             CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecC
Confidence                       001345788888988754211         1111124567778887776 6799999999999999888


Q ss_pred             CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++|.+|.+..          .+++...++||.||+|+|+++.
T Consensus       162 g~v~gv~~~~----------~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        162 GRFVGARAGS----------AAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             CeEEEEEEEc----------cCCceEEEECCEEEECCCCCCC
Confidence            9999988731          1123467899999999998653

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.61  E-value=1.7e-14  Score=143.27  Aligned_cols=145  Identities=23%  Similarity=0.362  Sum_probs=101.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCccc------------c---------------hh-
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL------------F---------------SA-  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~------------~---------------~~-  139 (321)
                      .++||||||+|.||++||+.|++. |.+|+||||....++++. .+|.+            +               +. 
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~   85 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR   85 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence            368999999999999999999999 999999999876544321 11110            0               00 


Q ss_pred             ---hhc--cchHHHHHHHcCCCcccCCC--e----------EEEe-----cHHHHHHHHHHHHHcCC-------C-----
Q 020815          140 ---MVV--RKPAHIFLDELGIDYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARP-------N-----  185 (321)
Q Consensus       140 ---~~~--~~~~~~~l~~~g~~~~~~~~--~----------~~~~-----~~~~~~~~l~~~~~~~~-------g-----  185 (321)
                         .+.  ....++||+++|++|+...+  +          ....     .+..+...|.+++.+.+       |     
T Consensus        86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~  165 (626)
T PRK07803         86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR  165 (626)
T ss_pred             HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence               000  11345789999999975321  1          1111     24567777877776432       5     


Q ss_pred             cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       186 v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +++++++.+++|+.++++|.|+.....         .+++...+.|+.||+|||+++.
T Consensus       166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VVlATGG~~~  214 (626)
T PRK07803        166 IKVFAECTITELLKDGGRIAGAFGYWR---------ESGRFVLFEAPAVVLATGGIGK  214 (626)
T ss_pred             eEEEeCCEEEEEEEECCEEEEEEEEEC---------CCCeEEEEEcCeEEECCCcccC
Confidence            999999999999988899999876321         1223467999999999999763

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.60  E-value=1.4e-14  Score=144.27  Aligned_cols=144  Identities=19%  Similarity=0.201  Sum_probs=101.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCccc--------------ch----------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL--------------FS----------------  138 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~--------------~~----------------  138 (321)
                      ++||||||+|.+|+.||+.+++. |++|+||||....++.+. ..|.+              ..                
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~   83 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQ   83 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCH
Confidence            68999999999999999999999 999999999876554321 11100              00                


Q ss_pred             ---hhhc--cchHHHHHHHcCCCcccCCCe--------------------------EE-------E-----ecHHHHHHH
Q 020815          139 ---AMVV--RKPAHIFLDELGIDYDEQDNY--------------------------VV-------I-----KHAALFTST  175 (321)
Q Consensus       139 ---~~~~--~~~~~~~l~~~g~~~~~~~~~--------------------------~~-------~-----~~~~~~~~~  175 (321)
                         ..+.  ....++||+++|++|+.....                          .+       .     .....+...
T Consensus        84 ~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~~  163 (657)
T PRK08626         84 EVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLYA  163 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHHH
Confidence               0000  123568999999988653110                          00       0     012345566


Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      |.+.+. +.|+++++++.+++|+.++++|.|+.+.+.         .+++...+.||.||+||||++..
T Consensus       164 L~~~~~-~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~---------~~G~~~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        164 VDNEAI-KLGVPVHDRKEAIALIHDGKRCYGAVVRCL---------ITGELRAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHH-hCCCEEEeeEEEEEEEEECCEEEEEEEEEc---------CCCcEEEEEcCeEEECCCcccCC
Confidence            777675 679999999999999999999999987431         12345678999999999998743

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.60  E-value=2e-14  Score=141.96  Aligned_cols=145  Identities=21%  Similarity=0.355  Sum_probs=101.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cccc-----------chh-----------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL-----------FSA-----------------  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~-----------~~~-----------------  139 (321)
                      .++||||||+|.||++||+.+++. |.+|+||||....++++.. .|.+           +..                 
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~   89 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA   89 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence            368999999999999999999999 9999999998654443321 1110           000                 


Q ss_pred             --hhcc--chHHHHHHHcCCCcccCCC--eEE-----------------E-----ecHHHHHHHHHHHHHcCCCcEEEcC
Q 020815          140 --MVVR--KPAHIFLDELGIDYDEQDN--YVV-----------------I-----KHAALFTSTIMSKLLARPNVKLFNA  191 (321)
Q Consensus       140 --~~~~--~~~~~~l~~~g~~~~~~~~--~~~-----------------~-----~~~~~~~~~l~~~~~~~~gv~i~~~  191 (321)
                        .+..  ...++||.++|++|+...+  +..                 .     ..+..+...|++.+. +.|++++.+
T Consensus        90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~-~~gi~i~~~  168 (591)
T PRK07057         90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNV-AAKTQFFVE  168 (591)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHH-hcCCEEEeC
Confidence              0000  1346788999999975321  110                 0     013457788888776 689999999


Q ss_pred             ceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          192 VAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       192 ~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +.+++|+.+ +++|.||.+.+.         .++....+.||.||+||||++..
T Consensus       169 ~~~~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        169 WMALDLIRDADGDVLGVTALEM---------ETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             cEEEEEEEcCCCeEEEEEEEEc---------CCCeEEEEECCeEEECCCCcccc
Confidence            999999986 588999987421         11234678999999999998744

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.60  E-value=2e-14  Score=142.30  Aligned_cols=144  Identities=24%  Similarity=0.371  Sum_probs=100.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcc--c---------chhh---------------hc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQ--L---------FSAM---------------VV  142 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~--~---------~~~~---------------~~  142 (321)
                      ++||||||+|.||++||+.|++. +|.+|+||||....+++++.++.  .         +...               +.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            68999999999999999999985 37999999998755444332221  0         0000               00


Q ss_pred             ------cchHHHHHHHcCCCcccCCC--eEE------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEE
Q 020815          143 ------RKPAHIFLDELGIDYDEQDN--YVV------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV  208 (321)
Q Consensus       143 ------~~~~~~~l~~~g~~~~~~~~--~~~------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~  208 (321)
                            ....++||+++|++|+....  +..      ...+..+...|.+.+.+..|+++++++.+++|+.++++|.||.
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~  170 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV  170 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence                  02356889999999865321  111      1234567777777776445699999999999998888999987


Q ss_pred             EeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          209 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       209 ~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ....         .+++...+.||.||+|||+++
T Consensus       171 ~~~~---------~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        171 GFSV---------RENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             EEEc---------cCCcEEEEECCEEEECCCchh
Confidence            5320         112335799999999999876

>TIGR00551 nadB L-aspartate oxidase

Probab=99.60  E-value=2.3e-14  Score=138.85  Aligned_cols=142  Identities=28%  Similarity=0.458  Sum_probs=102.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc------------------------hh----h
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF------------------------SA----M  140 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~------------------------~~----~  140 (321)
                      ++||||||+|.||+.||+.|++. |. |+||||....+|++. .+|.+.                        +.    .
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~   79 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEF   79 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence            57999999999999999999998 87 999999976665543 222110                        00    0


Q ss_pred             hc--cchHHHHHHHcCCCcccCCC--e----------EEEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815          141 VV--RKPAHIFLDELGIDYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG  201 (321)
Q Consensus       141 ~~--~~~~~~~l~~~g~~~~~~~~--~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~  201 (321)
                      +.  ....++||+++|++|+....  +          ....     .+..+...|.+++.+..|+++++++.+++|+.++
T Consensus        80 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~  159 (488)
T TIGR00551        80 VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET  159 (488)
T ss_pred             HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence            00  11356899999999875321  1          0111     2457788888888755799999999999999888


Q ss_pred             CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +++.|+.+...           +....++|+.||+|||+++..
T Consensus       160 g~v~Gv~~~~~-----------~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       160 GRVVGVWVWNR-----------ETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             CEEEEEEEEEC-----------CcEEEEEcCEEEECCCcccCC
Confidence            88998877430           123578999999999998753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07121 hypothetical protein; Validated

Probab=99.59  E-value=2.7e-14  Score=138.58  Aligned_cols=141  Identities=26%  Similarity=0.376  Sum_probs=100.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc----------------------hhh------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF----------------------SAM------  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~----------------------~~~------  140 (321)
                      .++||||||+|.+|++||++|++. |.+|+||||....||++...+..+                      ..+      
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~   97 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP   97 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence            368999999999999999999999 999999999987776653222110                      000      


Q ss_pred             ----------h-ccchHHHHHHHcCCCcccCCC--------------e-------------------EEE----e--cHH
Q 020815          141 ----------V-VRKPAHIFLDELGIDYDEQDN--------------Y-------------------VVI----K--HAA  170 (321)
Q Consensus       141 ----------~-~~~~~~~~l~~~g~~~~~~~~--------------~-------------------~~~----~--~~~  170 (321)
                                + ...+.++||+++|++|.....              +                   ...    .  ...
T Consensus        98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  177 (492)
T PRK07121         98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA  177 (492)
T ss_pred             CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence                      0 001346788899988753200              0                   000    0  245


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~  242 (321)
                      .+...|.+++. +.|+++++++++++|+.++ ++|.||+...           +++...++| |.||+|||+++
T Consensus       178 ~~~~~L~~~~~-~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----------~~~~~~i~a~k~VVlAtGg~~  239 (492)
T PRK07121        178 MLMDPLAKRAA-ALGVQIRYDTRATRLIVDDDGRVVGVEARR-----------YGETVAIRARKGVVLAAGGFA  239 (492)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----------CCcEEEEEeCCEEEECCCCcC
Confidence            67777877776 6799999999999999874 6899988742           113367899 99999999876

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.59  E-value=2.3e-14  Score=140.70  Aligned_cols=149  Identities=26%  Similarity=0.322  Sum_probs=100.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--CCCCccc-cCccc------------------------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--SPGGGAW-LGGQL------------------------------  136 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--~~gg~~~-~~g~~------------------------------  136 (321)
                      ++||||||+|.+|++||+.+++. |++|+||||.+  ..||++. .++.+                              
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~   82 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF   82 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence            68999999999999999999999 99999999998  5666542 11110                              


Q ss_pred             -----------chhhhc--cchHHHHHHHcCCCcccCC---------------CeEEE----ecHHHHHHHHHHHHH---
Q 020815          137 -----------FSAMVV--RKPAHIFLDELGIDYDEQD---------------NYVVI----KHAALFTSTIMSKLL---  181 (321)
Q Consensus       137 -----------~~~~~~--~~~~~~~l~~~g~~~~~~~---------------~~~~~----~~~~~~~~~l~~~~~---  181 (321)
                                 ...++.  ....++||+++|++|....               .....    .....+...|.+++.   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~~  162 (549)
T PRK12834         83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREAA  162 (549)
T ss_pred             CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHHH
Confidence                       001111  1356789999999885321               00000    112446666666553   


Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC-------C-CCCCceEEEcCeEEEcCCCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT-------Q-SCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~-------~-~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +..++++++++++++|+.++++|+||.+...    ..++       . ..+...++.||.||+||||++.
T Consensus       163 ~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~----~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~  228 (549)
T PRK12834        163 ARGLVRFRFRHRVDELVVTDGAVTGVRGTVL----EPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG  228 (549)
T ss_pred             HhCCceEEecCEeeEEEEeCCEEEEEEEEec----ccccccccccccccccceEEEecCEEEEeCCCccc
Confidence            2446999999999999998899999986310    0000       0 0012357899999999999874

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.59  E-value=3.2e-14  Score=140.34  Aligned_cols=141  Identities=29%  Similarity=0.372  Sum_probs=99.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCccc------------chh----h------hcc-----
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL------------FSA----M------VVR-----  143 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~------------~~~----~------~~~-----  143 (321)
                      ||||||+|++|++||+.|++. |.+|+||||....++++ +..|.+            ...    .      ..+     
T Consensus         1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~   79 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVE   79 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHH
Confidence            899999999999999999999 99999999987655433 111110            000    0      000     


Q ss_pred             ------chHHHHHHHcCCCcccCCC--eEE----------E-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815          144 ------KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (321)
Q Consensus       144 ------~~~~~~l~~~g~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~  200 (321)
                            ...++||+++|++|+....  +..          .     ..+..+...|.+.+. +.|+++++++.+++|+.+
T Consensus        80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~L~~~  158 (566)
T TIGR01812        80 YMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCL-KLGVSFFNEYFALDLIHD  158 (566)
T ss_pred             HHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHH-HcCCEEEeccEEEEEEEe
Confidence                  1346889999999865321  110          0     123456777888776 469999999999999998


Q ss_pred             CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +++|.||.....         .+++...+.||.||+|||+++.
T Consensus       159 ~g~v~Gv~~~~~---------~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       159 DGRVRGVVAYDL---------KTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             CCEEEEEEEEEC---------CCCcEEEEECCeEEECCCcccC
Confidence            999999887421         1123457999999999999873

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.59  E-value=2.8e-14  Score=139.59  Aligned_cols=145  Identities=23%  Similarity=0.375  Sum_probs=103.0

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccc---------h----hh-----------h--
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------S----AM-----------V--  141 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~---------~----~~-----------~--  141 (321)
                      .++||||||+|.||++||+.|++.  .+|+||||....+|++ +.+|.+.         .    ..           +  
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~   84 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVR   84 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHH
Confidence            478999999999999999999874  7999999987766643 3333210         0    00           0  


Q ss_pred             --c--cchHHHHHHHcCCCcccCC------CeEE----------Ee-----cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815          142 --V--RKPAHIFLDELGIDYDEQD------NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAED  196 (321)
Q Consensus       142 --~--~~~~~~~l~~~g~~~~~~~------~~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (321)
                        .  ....++||+++|++|+...      .+..          ..     .+..+...|++++.+..|+++++++.+++
T Consensus        85 ~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~  164 (536)
T PRK09077         85 FIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAID  164 (536)
T ss_pred             HHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeee
Confidence              0  0134689999999997532      1111          01     23567788888887667999999999999


Q ss_pred             EEEEC------CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          197 LIVKG------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       197 l~~~~------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      ++.++      ++|.||...+.         .+++...+.|+.||+|||+++..
T Consensus       165 Li~~~~~~~~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VVlATGG~~~~  209 (536)
T PRK09077        165 LITSDKLGLPGRRVVGAYVLNR---------NKERVETIRAKFVVLATGGASKV  209 (536)
T ss_pred             eeecccccCCCCEEEEEEEEEC---------CCCcEEEEecCeEEECCCCCCCC
Confidence            98764      78999987431         12244679999999999998743

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.58  E-value=3.6e-14  Score=139.14  Aligned_cols=143  Identities=21%  Similarity=0.276  Sum_probs=99.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCcc-ccCcccc-------------hhh------hc-----
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGA-WLGGQLF-------------SAM------VV-----  142 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~-~~~g~~~-------------~~~------~~-----  142 (321)
                      .++||||||+|.||++||+.+ +. |.+|+||||... .||++ +.++.+.             ...      ..     
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv   83 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV   83 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence            368999999999999999999 88 999999999864 34433 2222110             000      00     


Q ss_pred             ------cchHHHHHHHcCCCcccCCC--eE----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815          143 ------RKPAHIFLDELGIDYDEQDN--YV----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (321)
Q Consensus       143 ------~~~~~~~l~~~g~~~~~~~~--~~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~  199 (321)
                            ....++||+++|++|+...+  +.          ..     ..+..+...|.+.+. +.|+++++++.+++|+.
T Consensus        84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~t~v~~Li~  162 (543)
T PRK06263         84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLI-KERIKILEEVMAIKLIV  162 (543)
T ss_pred             HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHh-cCCCEEEeCeEeeeeEE
Confidence                  01345889999999875321  11          01     024567788888776 58999999999999998


Q ss_pred             ECCE-EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          200 KGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       200 ~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +++. |.|+.....         .+++...++||.||+|||+++.
T Consensus       163 ~~~~~v~Gv~~~~~---------~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        163 DENREVIGAIFLDL---------RNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             eCCcEEEEEEEEEC---------CCCcEEEEEcCcEEECCCCCCC
Confidence            8764 999876420         1123467999999999999873

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.58  E-value=5.3e-14  Score=138.97  Aligned_cols=145  Identities=14%  Similarity=0.213  Sum_probs=100.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-cccc----------------h-----------h--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLF----------------S-----------A--  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~~----------------~-----------~--  139 (321)
                      .+||||||+|.||++||+.+++. |++|+||||....+|++... |.+.                .           .  
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~   81 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPP   81 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence            46999999999999999999999 99999999987665443221 1110                0           0  


Q ss_pred             --hhcc--chHHHHHHHcCCCcccCCC--eEE----------E-----ecHHHHHHHHHHHHHcC---CCcEEEcCceEE
Q 020815          140 --MVVR--KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLAR---PNVKLFNAVAAE  195 (321)
Q Consensus       140 --~~~~--~~~~~~l~~~g~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~---~gv~i~~~~~v~  195 (321)
                        .+.+  ...++||+++|++|+...+  +..          .     ..+..+...|.+.+.+.   .+++++.++.++
T Consensus        82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~  161 (589)
T PRK08641         82 VKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFL  161 (589)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEE
Confidence              0000  1356899999999975321  110          0     12455667777666532   238999999999


Q ss_pred             EEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          196 DLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       196 ~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +|+.+ +++|.||.+.+.         .+++...+.|+.||+||||++..
T Consensus       162 ~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~~  202 (589)
T PRK08641        162 GAVLDDEGVCRGIVAQDL---------FTMEIESFPADAVIMATGGPGII  202 (589)
T ss_pred             EEEECCCCEEEEEEEEEC---------CCCcEEEEECCEEEECCCCCcCC
Confidence            99985 689999988531         11234578999999999998853

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.58  E-value=4.7e-14  Score=138.08  Aligned_cols=147  Identities=24%  Similarity=0.327  Sum_probs=102.0

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc-------------hhh--------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF-------------SAM--------------  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~-------------~~~--------------  140 (321)
                      .++||||||+|.||++||+.+++. |.+|+||||....+|++.. +|.+.             ...              
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~   93 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR   93 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            368999999999999999999999 9999999998776554322 12110             000              


Q ss_pred             -hcc--chHHHHHHHcCCCcccCCC--eEE----------Ee------cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815          141 -VVR--KPAHIFLDELGIDYDEQDN--YVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (321)
Q Consensus       141 -~~~--~~~~~~l~~~g~~~~~~~~--~~~----------~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~  199 (321)
                       +..  ...++||.++|++|+...+  +..          ..      .+..+.+.|.+++. +.++++++++.+++|+.
T Consensus        94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~-~~gV~i~~~~~v~~Li~  172 (541)
T PRK07804         94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVR-ADPLDIREHALALDLLT  172 (541)
T ss_pred             HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHH-hCCCEEEECeEeeeeEE
Confidence             000  1346899999999975321  111          10      24567788888776 56899999999999998


Q ss_pred             EC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          200 KG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       200 ~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++ ++|.|+.+.+.    .  ++.......+.|+.||+|||+++.
T Consensus       173 ~~~g~v~Gv~~~~~----~--~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        173 DGTGAVAGVTLHVL----G--EGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             cCCCeEEEEEEEec----c--CCCCCcEEEEEcCeEEECCCCCCC
Confidence            75 69999887420    0  000011257999999999999874

>PRK08275 putative oxidoreductase; Provisional

Probab=99.57  E-value=5.2e-14  Score=138.31  Aligned_cols=145  Identities=25%  Similarity=0.433  Sum_probs=100.9

Q ss_pred             CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc-cC-ccc----------c---------------hhh
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW-LG-GQL----------F---------------SAM  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~-~~-g~~----------~---------------~~~  140 (321)
                      .++||||||+|.||++||+.+++. +|.+|+||||....+++.. .+ +.+          +               +.-
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   87 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK   87 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence            368999999999999999999975 2689999999876433321 11 110          0               000


Q ss_pred             ----hc--cchHHHHHHHcCCCcccCC--CeEE------------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815          141 ----VV--RKPAHIFLDELGIDYDEQD--NYVV------------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (321)
Q Consensus       141 ----~~--~~~~~~~l~~~g~~~~~~~--~~~~------------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~  200 (321)
                          +.  ....++||+++|++|+...  .+..            ...+..+...|.+++. +.|+++++++.+++|+.+
T Consensus        88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~Li~~  166 (554)
T PRK08275         88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLK-RARVLITNRIMATRLLTD  166 (554)
T ss_pred             HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHH-HCCCEEEcceEEEEEEEc
Confidence                00  0245688999999987532  1211            0124467788888786 589999999999999987


Q ss_pred             -CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          201 -GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       201 -~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                       +++|.|+.+.+.         .+++...+.||.||+|||+++.
T Consensus       167 ~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        167 ADGRVAGALGFDC---------RTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             CCCeEEEEEEEec---------CCCcEEEEECCEEEECCCCccc
Confidence             788999876421         1223467999999999999864

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.55  E-value=9.8e-14  Score=137.04  Aligned_cols=142  Identities=23%  Similarity=0.338  Sum_probs=99.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc-----------h---------------h---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF-----------S---------------A---  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~-----------~---------------~---  139 (321)
                      ++||||||+|.||++||+.|++  +.+|+||||....++++. .+|.+.           .               .   
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v   82 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA   82 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence            6899999999999999999986  489999999865554321 111110           0               0   


Q ss_pred             -hhc--cchHHHHHHHcCCCcccCCC--eE-----------------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCc
Q 020815          140 -MVV--RKPAHIFLDELGIDYDEQDN--YV-----------------VI-----KHAALFTSTIMSKLLARPNVKLFNAV  192 (321)
Q Consensus       140 -~~~--~~~~~~~l~~~g~~~~~~~~--~~-----------------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~  192 (321)
                       .+.  ....++||+++|++|+...+  +.                 ..     ..+..+...|.+++. +.|+++++++
T Consensus        83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gv~i~~~~  161 (583)
T PRK08205         83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCV-KHGVEFFNEF  161 (583)
T ss_pred             HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHH-hcCCEEEeCC
Confidence             000  11346889999999965321  10                 00     023567788888776 6799999999


Q ss_pred             eEEEEEEEC----CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          193 AAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       193 ~v~~l~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+++|+.++    ++|.|+...+.         .+++...+.|+.||+|||+++.
T Consensus       162 ~v~~Li~~~~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        162 YVLDLLLTETPSGPVAAGVVAYEL---------ATGEIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             EEEEEEecCCccCCcEEEEEEEEc---------CCCeEEEEEeCeEEECCCCCcc
Confidence            999999876    78999987321         1123457899999999999873

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.55  E-value=5.6e-14  Score=136.72  Aligned_cols=141  Identities=26%  Similarity=0.424  Sum_probs=99.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCcc-ccCcccc---------h----hh-------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGA-WLGGQLF---------S----AM-------------  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~-~~~g~~~---------~----~~-------------  140 (321)
                      .++||||||+|.||++||+.++   +.+|+||||... .+|++ +.+|.+.         .    ..             
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v   84 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA   84 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence            4789999999999999999996   469999999876 34433 3333221         0    00             


Q ss_pred             --hc--cchHHHHHHHcCCCcccCCC--eEE----------E------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815          141 --VV--RKPAHIFLDELGIDYDEQDN--YVV----------I------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (321)
Q Consensus       141 --~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~  198 (321)
                        +.  ....++||+++|++|+....  +..          .      ..+..+...|.+.+.+..|+++++++.+++|+
T Consensus        85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li  164 (513)
T PRK07512         85 ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLL  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhee
Confidence              00  01346899999999875321  111          0      12356778888888655699999999999998


Q ss_pred             EECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .++++|.|+.+...           +....+.||.||+||||++.
T Consensus       165 ~~~g~v~Gv~~~~~-----------~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        165 VDDGAVAGVLAATA-----------GGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             ecCCEEEEEEEEeC-----------CeEEEEECCEEEEcCCCCcC
Confidence            88899999887420           12247999999999999763

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.55  E-value=1.3e-13  Score=131.37  Aligned_cols=135  Identities=26%  Similarity=0.404  Sum_probs=89.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHc----------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL----------------  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~----------------  153 (321)
                      +|||||||||++|++||+.|++. |++|+||||...++.....++.+....+..- ..++....                
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l-~~~~~~~~~~~~~~~~~~~~~~~~   82 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAGAKNVTGGRLYAHSLEHI-IPGFADSAPVERLITHEKLAFMTE   82 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCCCcccccceechhhHHHH-hhhhhhcCcccceeeeeeEEEEcC
Confidence            59999999999999999999999 9999999999877654333333221111000 00000000                


Q ss_pred             -C---CCccc-----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCC
Q 020815          154 -G---IDYDE-----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (321)
Q Consensus       154 -g---~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (321)
                       +   +.+..     .....+......|.+.|.+++. +.|++++.+++|+++..+++++.++...              
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~-~~Gv~i~~~~~V~~i~~~~g~v~~v~~~--------------  147 (428)
T PRK10157         83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAE-EAGAQLITGIRVDNLVQRDGKVVGVEAD--------------  147 (428)
T ss_pred             CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHH-HCCCEEECCCEEEEEEEeCCEEEEEEcC--------------
Confidence             0   01100     0011122345677788888876 6799999999999998888877665531              


Q ss_pred             CceEEEcCeEEEcCCCCC
Q 020815          225 DPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       225 ~~~~i~a~~VI~AtG~~~  242 (321)
                       +.+++|+.||+|+|..+
T Consensus       148 -g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        148 -GDVIEAKTVILADGVNS  164 (428)
T ss_pred             -CcEEECCEEEEEeCCCH
Confidence             25799999999999654

>PRK06185 hypothetical protein; Provisional

Probab=99.54  E-value=3.6e-13  Score=127.58  Aligned_cols=135  Identities=25%  Similarity=0.390  Sum_probs=90.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      .++||+|||||++|+++|+.|++. |++|+|||+.+..... . .+     ........+.|+++|+.            
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~~~~~-~-r~-----~~l~~~s~~~L~~lG~~~~~~~~~~~~~~   76 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHADFLRD-F-RG-----DTVHPSTLELMDELGLLERFLELPHQKVR   76 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcc-c-cC-----ceeChhHHHHHHHcCChhHHhhcccceee
Confidence            469999999999999999999999 9999999997533110 0 00     01112223333333331            


Q ss_pred             ---------------cccC---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          157 ---------------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       157 ---------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                                     +...   ..+........+.+.|++++.+..|++++++++++++..+++++.+|.+..       
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~-------  149 (407)
T PRK06185         77 TLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-------  149 (407)
T ss_pred             eEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-------
Confidence                           0000   011223344567788888876567999999999999999888887776532       


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         .+ ...+++||.||.|+|.++
T Consensus       150 ---~~-g~~~i~a~~vI~AdG~~S  169 (407)
T PRK06185        150 ---PD-GPGEIRADLVVGADGRHS  169 (407)
T ss_pred             ---CC-CcEEEEeCEEEECCCCch
Confidence               00 125799999999999655

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.54  E-value=1.1e-13  Score=134.52  Aligned_cols=140  Identities=25%  Similarity=0.333  Sum_probs=99.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccch-------------hh---------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFS-------------AM---------------  140 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~~-------------~~---------------  140 (321)
                      ++||||||+|.||++||+.+++  |.+|+||||....+|++ +.+|.+..             ..               
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   80 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY   80 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence            5899999999999999999964  78999999998766665 23332110             00               


Q ss_pred             hcc--chHHHHHHHcCCCcccCC--CeE----------EEe------cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815          141 VVR--KPAHIFLDELGIDYDEQD--NYV----------VIK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (321)
Q Consensus       141 ~~~--~~~~~~l~~~g~~~~~~~--~~~----------~~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~  200 (321)
                      +.+  ...++||.++|++|+...  .+.          ...      ....+.+.|.+.+.  .|+++++++.+++|+.+
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~  158 (510)
T PRK08071         81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE  158 (510)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec
Confidence            000  134578999999997431  111          111      13456777777664  58999999999999988


Q ss_pred             CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +++|.|+.+.+          .+++...++||.||+|||+++.
T Consensus       159 ~g~v~Gv~~~~----------~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        159 NGRCIGVLTKD----------SEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             CCEEEEEEEEE----------CCCcEEEEEcCeEEEecCCCcc
Confidence            89999998743          1123457999999999999874

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.54  E-value=1.2e-13  Score=130.39  Aligned_cols=140  Identities=23%  Similarity=0.283  Sum_probs=93.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh----ccchH--HHHHHHc-----CCCc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV----VRKPA--HIFLDEL-----GIDY-  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~----~~~~~--~~~l~~~-----g~~~-  157 (321)
                      +|||+||||||||++||+.|++. |++|+|+||+..+|.....++.+....+    .....  .......     +-.+ 
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~   81 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA   81 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence            69999999999999999999999 9999999999988875544232221111    11100  0000000     0000 


Q ss_pred             -ccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815          158 -DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (321)
Q Consensus       158 -~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~  236 (321)
                       ..............|.++|.+++. +.|++++.++++.++..+++.+..+....              ..+++||+||+
T Consensus        82 ~~~~~~~~y~v~R~~fd~~La~~A~-~aGae~~~~~~~~~~~~~~~~~~~~~~~~--------------~~e~~a~~vI~  146 (396)
T COG0644          82 IEVPVGEGYIVDRAKFDKWLAERAE-EAGAELYPGTRVTGVIREDDGVVVGVRAG--------------DDEVRAKVVID  146 (396)
T ss_pred             EecCCCceEEEEhHHhhHHHHHHHH-HcCCEEEeceEEEEEEEeCCcEEEEEEcC--------------CEEEEcCEEEE
Confidence             000011334456788888888886 78999999999999999886655544421              16899999999


Q ss_pred             cCCCCCCCc
Q 020815          237 SCGHDGPFG  245 (321)
Q Consensus       237 AtG~~~~~~  245 (321)
                      |+|..+.+.
T Consensus       147 AdG~~s~l~  155 (396)
T COG0644         147 ADGVNSALA  155 (396)
T ss_pred             CCCcchHHH
Confidence            999766544

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.54  E-value=1.9e-13  Score=133.17  Aligned_cols=141  Identities=23%  Similarity=0.390  Sum_probs=97.0

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cc-ccc-----------------------hhh---
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GG-QLF-----------------------SAM---  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g-~~~-----------------------~~~---  140 (321)
                      .++||||||+| +|++||++|++. |.+|+||||....||++.. ++ .+.                       ...   
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   83 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGD   83 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhcc
Confidence            37899999999 999999999999 9999999998876665522 11 110                       000   


Q ss_pred             hcc-----------chHHHHHHH-cCCCcccCC--------------C-eEEE---------------------------
Q 020815          141 VVR-----------KPAHIFLDE-LGIDYDEQD--------------N-YVVI---------------------------  166 (321)
Q Consensus       141 ~~~-----------~~~~~~l~~-~g~~~~~~~--------------~-~~~~---------------------------  166 (321)
                      ...           ...++||++ .|++|....              . ....                           
T Consensus        84 ~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (513)
T PRK12837         84 RTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGA  163 (513)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhcc
Confidence            000           123578876 577764210              0 0000                           


Q ss_pred             ------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC-eEEEcCC
Q 020815          167 ------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCG  239 (321)
Q Consensus       167 ------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~-~VI~AtG  239 (321)
                            .....+...+++.+.++.|+++++++++++|+.++++|.||+...           +++..+++|+ .||+|||
T Consensus       164 ~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-----------~g~~~~i~A~k~VIlAtG  232 (513)
T PRK12837        164 PPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-----------GGERRRVRARRGVLLAAG  232 (513)
T ss_pred             CCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-----------CCcEEEEEeCceEEEeCC
Confidence                  002346666777776567999999999999999889999998742           1234679996 7999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      +++
T Consensus       233 G~~  235 (513)
T PRK12837        233 GFE  235 (513)
T ss_pred             Ccc
Confidence            975

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.53  E-value=1.7e-13  Score=135.01  Aligned_cols=141  Identities=19%  Similarity=0.315  Sum_probs=96.5

Q ss_pred             cEEEECCChHHHHHHHHhh----cCCCCeEEEEeccCCCCCccccCcc--c------------chhh-------------
Q 020815           92 DVVVVGAGSAGLSCAYELS----KNPNIQIAIIEQSVSPGGGAWLGGQ--L------------FSAM-------------  140 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La----~~~G~~V~liEk~~~~gg~~~~~g~--~------------~~~~-------------  140 (321)
                      ||||||+|.|||.||+.++    +. |.+|+||||....+.+++.+|.  +            ....             
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d   79 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR   79 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence            8999999999999999998    67 9999999998654433333331  0            0000             


Q ss_pred             ------hcc--chHHHHHHHcCCCcccCC-CeEEE--------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--
Q 020815          141 ------VVR--KPAHIFLDELGIDYDEQD-NYVVI--------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--  201 (321)
Q Consensus       141 ------~~~--~~~~~~l~~~g~~~~~~~-~~~~~--------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--  201 (321)
                            +.+  ...++||.++|++|+... .....        ..+..+.+.+...+. +.++++++++.+++|+.++  
T Consensus        80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~-~~~~~i~~~~~v~~Ll~d~~~  158 (614)
T TIGR02061        80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAK-NALGDIFERIFIVKLLLDKNT  158 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHH-hCCCeEEcccEEEEEEecCCC
Confidence                  000  135689999999996531 11111        123445555555554 4568999999999999865  


Q ss_pred             -CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          202 -GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       202 -~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                       ++|.||.+.+.         .+++...+.||.||+|||+++.
T Consensus       159 ~GrV~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       159 PNRIAGAVGFNV---------RANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             CCeEEEEEEEEe---------CCCcEEEEECCEEEECCCcccc
Confidence             79999987431         1224467999999999999874

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08013 oxidoreductase; Provisional

Probab=99.53  E-value=3.5e-13  Score=127.52  Aligned_cols=145  Identities=19%  Similarity=0.307  Sum_probs=91.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-------------  156 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+.+.+..... .+.............+.|+++|+.             
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~~~~~g-~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~   80 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPEPLAAD-APPALRVSAINAASEKLLTRLGVWQDILARRASCYHG   80 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCcccccC-CCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence            58999999999999999999999 999999999865321100 000011111122333444444431             


Q ss_pred             -------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815          157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~  219 (321)
                                   ++..    .......+...+.+.|++++.+..|++++++++++++..+++.+. +...         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~---------  150 (400)
T PRK08013         81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLK---------  150 (400)
T ss_pred             EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEc---------
Confidence                         0000    001123345677788888887656899999999999987766443 2221         


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                           ++.+++||+||.|+|.+     |.+|+..+++
T Consensus       151 -----~g~~i~a~lvVgADG~~-----S~vR~~~~~~  177 (400)
T PRK08013        151 -----DGSMLTARLVVGADGAN-----SWLRNKADIP  177 (400)
T ss_pred             -----CCCEEEeeEEEEeCCCC-----cHHHHHcCCC
Confidence                 22679999999999954     4455544433

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.53  E-value=1.6e-13  Score=134.59  Aligned_cols=44  Identities=30%  Similarity=0.540  Sum_probs=39.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG  134 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g  134 (321)
                      .+|||||||+| +|++||+.+++. |++|+||||.+..||++...+
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~GG~~~~~g   58 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYVGGSTARSG   58 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCCcCcccCcC
Confidence            37999999999 899999999999 999999999988888775443

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.53  E-value=1.8e-13  Score=126.33  Aligned_cols=141  Identities=23%  Similarity=0.328  Sum_probs=90.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-------------  156 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+.+.+....  .+     ........+.|+++|+.             
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~~~~~--~~-----~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~   72 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDPRPKG--RG-----IGLSPNSLRILQRLGLLDEILARGSPHEVM   72 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSCCCSS--SS-----EEEEHHHHHHHHHTTEHHHHHHHSEEECEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccccccc--cc-----cccccccccccccccchhhhhhhcccccce
Confidence            37999999999999999999999 99999999987553221  11     11112223334433321             


Q ss_pred             ----ccc---------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEee
Q 020815          157 ----YDE---------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW  211 (321)
Q Consensus       157 ----~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~  211 (321)
                          +..                     ........+...+.+.|.+.+. +.+++++++++++++..+++.+..+....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~~~~d~~~~~~~~~~~  151 (356)
T PF01494_consen   73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAE-ERGVDIRFGTRVVSIEQDDDGVTVVVRDG  151 (356)
T ss_dssp             EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHH-HHTEEEEESEEEEEEEEETTEEEEEEEET
T ss_pred             eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhh-hhhhhheeeeecccccccccccccccccc
Confidence                000                     0111223345677788888876 45799999999999998888766554421


Q ss_pred             cceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhh
Q 020815          212 ALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKS  254 (321)
Q Consensus       212 ~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~  254 (321)
                                .+++..+++||+||.|+|     .+|.+|+...
T Consensus       152 ----------~~g~~~~i~adlvVgADG-----~~S~vR~~l~  179 (356)
T PF01494_consen  152 ----------EDGEEETIEADLVVGADG-----AHSKVRKQLG  179 (356)
T ss_dssp             ----------CTCEEEEEEESEEEE-SG-----TT-HHHHHTT
T ss_pred             ----------cCCceeEEEEeeeecccC-----cccchhhhcc
Confidence                      123446899999999999     5555665543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.53  E-value=1.8e-13  Score=144.31  Aligned_cols=148  Identities=20%  Similarity=0.201  Sum_probs=101.5

Q ss_pred             CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cccc--------------------chhh------
Q 020815           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL--------------------FSAM------  140 (321)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~--------------------~~~~------  140 (321)
                      +.++||||||+|.||++||+.+++. |.+|+||||....||++.. ++.+                    ....      
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~  485 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG  485 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence            4579999999999999999999999 9999999999888776531 1110                    0000      


Q ss_pred             -hcc-----------chHHHHHHHcCCCcccCC--------CeEEE---------ecHHHHHHHHHHHHHc--CCCcEEE
Q 020815          141 -VVR-----------KPAHIFLDELGIDYDEQD--------NYVVI---------KHAALFTSTIMSKLLA--RPNVKLF  189 (321)
Q Consensus       141 -~~~-----------~~~~~~l~~~g~~~~~~~--------~~~~~---------~~~~~~~~~l~~~~~~--~~gv~i~  189 (321)
                       ..+           .+.++||+++|++|....        .....         .....+...|.+.+.+  +.|++|+
T Consensus       486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~  565 (1167)
T PTZ00306        486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIM  565 (1167)
T ss_pred             CCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEE
Confidence             000           134689999999885410        01100         0134455666666553  2599999


Q ss_pred             cCceEEEEEEEC---------CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          190 NAVAAEDLIVKG---------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       190 ~~~~v~~l~~~~---------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +++++++|+.++         ++|+||.+.+.       ...+++...+.||.||+||||++.
T Consensus       566 ~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~-------~~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        566 TETTVTSLLSESSARPDGVREIRVTGVRYKQA-------SDASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             ECCEEEEEEecCCcccCCCccceEEEEEEEec-------ccCCCcEEEEEeceEEEecCCccc
Confidence            999999999864         28999988530       001235578999999999999875

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.52  E-value=2.3e-13  Score=131.08  Aligned_cols=136  Identities=21%  Similarity=0.358  Sum_probs=96.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc---------h----hh---------------hc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF---------S----AM---------------VV  142 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~---------~----~~---------------~~  142 (321)
                      +||||||+|++|++||+.|++. |.+|+||||....+.+.+..+.+.         .    ..               +.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~   80 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI   80 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5999999999999999999999 999999999854333222222110         0    00               00


Q ss_pred             --cchHHHHHHHcCCCcccCC-----CeEEE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEe
Q 020815          143 --RKPAHIFLDELGIDYDEQD-----NYVVI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN  210 (321)
Q Consensus       143 --~~~~~~~l~~~g~~~~~~~-----~~~~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~  210 (321)
                        ....++||+++|++|+...     .+...     .....+.+.|.+.+. +.|+++++. .++++..+++++.|+.+.
T Consensus        81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~-~v~~l~~~~g~v~Gv~~~  158 (466)
T PRK08401         81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAR-ELGVNFIRG-FAEELAIKNGKAYGVFLD  158 (466)
T ss_pred             HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHH-hcCCEEEEe-EeEEEEeeCCEEEEEEEC
Confidence              0134579999999986431     11111     124567788888886 679999876 888988888899888762


Q ss_pred             ecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       211 ~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                                     ...+.++.||+|||+++..
T Consensus       159 ---------------g~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        159 ---------------GELLKFDATVIATGGFSGL  177 (466)
T ss_pred             ---------------CEEEEeCeEEECCCcCcCC
Confidence                           2578999999999998754

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.52  E-value=2e-13  Score=134.11  Aligned_cols=141  Identities=28%  Similarity=0.442  Sum_probs=99.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc-----------------------hhhh----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF-----------------------SAMV----  141 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~-----------------------~~~~----  141 (321)
                      ++||||||+|.+|+++|+.|++. |++|+||||....||++.. ++++.                       ....    
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~   84 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQG   84 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcccc
Confidence            68999999999999999999999 9999999998777776422 22210                       0000    


Q ss_pred             --cc-----------chHHHHHHHcCCCcccCC---CeE----------EE-----------------------------
Q 020815          142 --VR-----------KPAHIFLDELGIDYDEQD---NYV----------VI-----------------------------  166 (321)
Q Consensus       142 --~~-----------~~~~~~l~~~g~~~~~~~---~~~----------~~-----------------------------  166 (321)
                        ..           .+.++||+++|++|....   .++          ..                             
T Consensus        85 ~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (557)
T PRK12844         85 PASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPGTV  164 (557)
T ss_pred             cCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccccc
Confidence              00           134688999999885321   000          00                             


Q ss_pred             ----------------------------------------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEE
Q 020815          167 ----------------------------------------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG  206 (321)
Q Consensus       167 ----------------------------------------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~g  206 (321)
                                                              ..+..+...|.++++ +.|++++.+++|++|+.++++|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~-~~gv~i~~~~~v~~Li~~~g~v~G  243 (557)
T PRK12844        165 VMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAAL-AAGVPLWTNTPLTELIVEDGRVVG  243 (557)
T ss_pred             ccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEE
Confidence                                                    002334556666665 679999999999999999999999


Q ss_pred             EEEeecceecccCCCCCCCceEEEcC-eEEEcCCCCCC
Q 020815          207 VVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDGP  243 (321)
Q Consensus       207 v~~~~~~~~~~~~~~~~g~~~~i~a~-~VI~AtG~~~~  243 (321)
                      |.+..           +++..++.|+ .||+|||+++.
T Consensus       244 v~~~~-----------~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        244 VVVVR-----------DGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             EEEEE-----------CCeEEEEEecceEEEecCCccC
Confidence            98742           1234678895 79999999874

>PRK10015 oxidoreductase; Provisional

Probab=99.52  E-value=1.4e-13  Score=131.13  Aligned_cols=138  Identities=22%  Similarity=0.413  Sum_probs=89.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccch----hhhcc----chHHHHHHH---------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS----AMVVR----KPAHIFLDE---------  152 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~----~~~~~----~~~~~~l~~---------  152 (321)
                      +|||||||||++|++||+.|++. |++|+||||...+|.....++.+..    .+...    ....+....         
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~   83 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE   83 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence            69999999999999999999999 9999999998876643222222211    11000    000000000         


Q ss_pred             --cCCCcccC-----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          153 --LGIDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       153 --~g~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                        ..+++...     ....+......|.+.|.+++. +.|++++.+++|+++..+++++.++.+.               
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~-~~Gv~i~~~~~V~~i~~~~~~v~~v~~~---------------  147 (429)
T PRK10015         84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-QAGAQFIPGVRVDALVREGNKVTGVQAG---------------  147 (429)
T ss_pred             CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCEEEEEEeC---------------
Confidence              01111110     001122344667777888876 6799999999999998888887777652               


Q ss_pred             ceEEEcCeEEEcCCCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~  244 (321)
                      ..+++|+.||+|+|..+.+
T Consensus       148 ~~~i~A~~VI~AdG~~s~v  166 (429)
T PRK10015        148 DDILEANVVILADGVNSML  166 (429)
T ss_pred             CeEEECCEEEEccCcchhh
Confidence            2579999999999976543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.52  E-value=2.6e-13  Score=140.08  Aligned_cols=146  Identities=20%  Similarity=0.315  Sum_probs=99.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC--ccc----------chh---------------hh
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG--GQL----------FSA---------------MV  141 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~--g~~----------~~~---------------~~  141 (321)
                      .++||||||+|.+|+.||+.+++. |.+|+||||.....++....  +.+          +..               .+
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~   90 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT   90 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence            368999999999999999999999 99999999986422111110  000          000               00


Q ss_pred             c------cchHHHHHHHcCCCcccCCC--eEE------------EecHHHHHHHHHHHHHcC---CCcEEEcCceEEEEE
Q 020815          142 V------RKPAHIFLDELGIDYDEQDN--YVV------------IKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLI  198 (321)
Q Consensus       142 ~------~~~~~~~l~~~g~~~~~~~~--~~~------------~~~~~~~~~~l~~~~~~~---~gv~i~~~~~v~~l~  198 (321)
                      .      ....++||+++|++|+....  +..            ...+..+...|++.+.+.   .+++++.++.+++|+
T Consensus        91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li  170 (897)
T PRK13800         91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVL  170 (897)
T ss_pred             HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEE
Confidence            0      01356899999999976422  110            012345556666665432   479999999999999


Q ss_pred             EECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      .++++|.|+...+.         .+|+...+.||.||+||||++..
T Consensus       171 ~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~g~~  207 (897)
T PRK13800        171 TEGGRAVGAAALNT---------RTGEFVTVGAKAVILATGPCGRL  207 (897)
T ss_pred             eeCCEEEEEEEEec---------CCCcEEEEECCEEEECCCccccC
Confidence            88999999987431         12345789999999999998743

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.51  E-value=3.8e-13  Score=124.28  Aligned_cols=132  Identities=27%  Similarity=0.370  Sum_probs=87.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhh--------h--ccchH---------------
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM--------V--VRKPA---------------  146 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~--------~--~~~~~---------------  146 (321)
                      ||+|||||++|+++|++|++. |.+|+|||++...++.+...+.++...        .  .....               
T Consensus         1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   79 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV   79 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence            899999999999999999999 999999999954444443222211111        0  00000               


Q ss_pred             -----------------------HHHHHHcCCCccc-------------CCC--------eEEEecHHHHHHHHHHHHHc
Q 020815          147 -----------------------HIFLDELGIDYDE-------------QDN--------YVVIKHAALFTSTIMSKLLA  182 (321)
Q Consensus       147 -----------------------~~~l~~~g~~~~~-------------~~~--------~~~~~~~~~~~~~l~~~~~~  182 (321)
                                             .+.++..++++..             ...        -....+...+.+.|.+.+. 
T Consensus        80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~-  158 (358)
T PF01266_consen   80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQ-  158 (358)
T ss_dssp             EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHH-
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHH-
Confidence                                   1122333332110             000        0012356788899988887 


Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      +.|++++.+++|++|..+++++.+|.+.+               ..++||.||+|+|.
T Consensus       159 ~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~---------------g~i~ad~vV~a~G~  201 (358)
T PF01266_consen  159 RAGVEIRTGTEVTSIDVDGGRVTGVRTSD---------------GEIRADRVVLAAGA  201 (358)
T ss_dssp             HTT-EEEESEEEEEEEEETTEEEEEEETT---------------EEEEECEEEE--GG
T ss_pred             Hhhhhccccccccchhhcccccccccccc---------------cccccceeEecccc
Confidence            56999999999999999999999999853               45999999999994

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.50  E-value=2.5e-13  Score=134.31  Aligned_cols=141  Identities=18%  Similarity=0.207  Sum_probs=95.3

Q ss_pred             EEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-Ccc-ccCccc------------chh-------------------
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGA-WLGGQL------------FSA-------------------  139 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~-~~~g~~------------~~~-------------------  139 (321)
                      |||||+|.||++||+.+++. |.+|+||||...++ +++ +..|.+            +..                   
T Consensus         1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~   79 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK   79 (603)
T ss_pred             CEEECccHHHHHHHHHHHHc-CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            69999999999999999999 99999999987443 222 222110            000                   


Q ss_pred             hhc--cchHHHHHHHcCCCcccCCC--eE--E------------E-ecHHHHHHHHHHHHHc---CCCcEEEcCceEEEE
Q 020815          140 MVV--RKPAHIFLDELGIDYDEQDN--YV--V------------I-KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDL  197 (321)
Q Consensus       140 ~~~--~~~~~~~l~~~g~~~~~~~~--~~--~------------~-~~~~~~~~~l~~~~~~---~~gv~i~~~~~v~~l  197 (321)
                      .+.  ....++||+++|++|+...+  +.  .            . ..+..+...|.+.+.+   ..|+++++++.+++|
T Consensus        80 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L  159 (603)
T TIGR01811        80 RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDI  159 (603)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence            000  12356899999999865321  00  0            0 1234566666555532   358999999999999


Q ss_pred             EEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          198 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       198 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +.++ ++|.||.+.+.         .+++...+.||.||+||||++.
T Consensus       160 i~dd~grV~GV~~~~~---------~~g~~~~i~AkaVVLATGG~g~  197 (603)
T TIGR01811       160 IVVDGNRARGIIARNL---------VTGEIETHSADAVILATGGYGN  197 (603)
T ss_pred             EEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEECCCCCcC
Confidence            9864 69999987531         1223467999999999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.50  E-value=5.8e-13  Score=125.47  Aligned_cols=138  Identities=25%  Similarity=0.368  Sum_probs=99.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCcccchhhhccchHHHHHHHcCC-Cc----------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-DY----------  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~-~~----------  157 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+ ..-..    +   .........++.|+++|+ +-          
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~~~~~~~~----~---r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~   73 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERAPRELLER----G---RGIALSPNALRALERLGLWDRLEALGVPPLH   73 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccCccccccC----c---eeeeecHhHHHHHHHcCChhhhhhccCCcee
Confidence            47999999999999999999999 99999999972 21110    0   223344556677777776 20          


Q ss_pred             ----ccC--------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815          158 ----DEQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       158 ----~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~  219 (321)
                          +..              ..+....+...+.+.|++++.+..+++++.+++|+.+..+++.+. +...       . 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~-------~-  144 (387)
T COG0654          74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLS-------F-  144 (387)
T ss_pred             eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEc-------C-
Confidence                000              112234456788899999998778899999999999999888777 5543       0 


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhh
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKS  254 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~  254 (321)
                           ++.+++||+||.|+|     .+|.+|+...
T Consensus       145 -----dG~~~~a~llVgADG-----~~S~vR~~~~  169 (387)
T COG0654         145 -----DGETLDADLLVGADG-----ANSAVRRAAG  169 (387)
T ss_pred             -----CCcEEecCEEEECCC-----CchHHHHhcC
Confidence                 124899999999999     5566666655

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.49  E-value=3.9e-13  Score=132.58  Aligned_cols=41  Identities=29%  Similarity=0.599  Sum_probs=37.2

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .++||||||+|.+|++||+.|++. |++|+||||....||++
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCCCchH
Confidence            368999999999999999999999 99999999998777643

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.48  E-value=1.5e-12  Score=122.86  Aligned_cols=136  Identities=22%  Similarity=0.343  Sum_probs=86.9

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC----------cc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID----------YD  158 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~----------~~  158 (321)
                      ..+||+|||||++|+++|+.|+++ |++|+|||+.+.+.-..  .+.............+.|+++|+.          +.
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~~~~~~--~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~   81 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADA-GLSVALVEGREPPRWQA--DQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYR   81 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCCccccc--CCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCccc
Confidence            368999999999999999999999 99999999986432100  000000011122233334443331          10


Q ss_pred             c--------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          159 E--------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       159 ~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                      .                    ...+.+..+...+.+.|.+.+. +.|++++++++++++..+++.+. +.+.        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~v~-v~~~--------  151 (392)
T PRK08773         82 RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALH-AAGVQLHCPARVVALEQDADRVR-LRLD--------  151 (392)
T ss_pred             EEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecCCeEE-EEEC--------
Confidence            0                    0011122344667778888776 57999999999999987776543 3332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                            ++.+++||.||.|+|..+.
T Consensus       152 ------~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        152 ------DGRRLEAALAIAADGAAST  170 (392)
T ss_pred             ------CCCEEEeCEEEEecCCCch
Confidence                  1257999999999996653

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.48  E-value=1.2e-12  Score=118.10  Aligned_cols=136  Identities=21%  Similarity=0.318  Sum_probs=86.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhc--cchHHHHHHHcC-C----------Cc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV--RKPAHIFLDELG-I----------DY  157 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~--~~~~~~~l~~~g-~----------~~  157 (321)
                      |||+|||||++|+++|+.|++. |++|+|||+...++. .+.+..+....+.  ............ .          .+
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFPRY-KPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI   78 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCc-ccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence            6999999999999999999999 999999999876543 2222221110000  000000000000 0          00


Q ss_pred             ccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      ..........+...+.+.|.+.+. +.|++++++++++++..+++.+... ...             +..++++|+||+|
T Consensus        79 ~~~~~~~~~i~r~~l~~~l~~~~~-~~gv~~~~~~~v~~~~~~~~~~~~~-~~~-------------~~~~~~a~~vv~a  143 (295)
T TIGR02032        79 PIETELAYVIDRDAFDEQLAERAQ-EAGAELRLGTTVLDVEIHDDRVVVI-VRG-------------GEGTVTAKIVIGA  143 (295)
T ss_pred             ccCCCcEEEEEHHHHHHHHHHHHH-HcCCEEEeCcEEeeEEEeCCEEEEE-EcC-------------ccEEEEeCEEEEC
Confidence            001122334556778888888886 6799999999999998887754322 211             2368999999999


Q ss_pred             CCCCCC
Q 020815          238 CGHDGP  243 (321)
Q Consensus       238 tG~~~~  243 (321)
                      +|.++.
T Consensus       144 ~G~~s~  149 (295)
T TIGR02032       144 DGSRSI  149 (295)
T ss_pred             CCcchH
Confidence            996653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.48  E-value=6.9e-13  Score=126.99  Aligned_cols=139  Identities=27%  Similarity=0.300  Sum_probs=94.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCcccc-Ccccc--------------------hhhh------cc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWL-GGQLF--------------------SAMV------VR  143 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~-~g~~~--------------------~~~~------~~  143 (321)
                      ||||||+|.+|++||+.|++. | .+|+||||....||++.. ++.+.                    ...+      .+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   79 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND   79 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            899999999999999999999 9 999999999877765432 11110                    0000      00


Q ss_pred             -----------chHHHHHHHcCCCcccCC-----C--eEE-------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815          144 -----------KPAHIFLDELGIDYDEQD-----N--YVV-------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (321)
Q Consensus       144 -----------~~~~~~l~~~g~~~~~~~-----~--~~~-------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~  198 (321)
                                 ...++|+. .++.+....     .  +..       ......+...|.+.+. +.|+++++++++++|+
T Consensus        80 ~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~gv~i~~~~~v~~l~  157 (439)
T TIGR01813        80 PELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK-KEGIDTRLNSKVEDLI  157 (439)
T ss_pred             HHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHH-HcCCEEEeCCEeeEeE
Confidence                       12346776 444332210     0  000       0134567788888876 6799999999999999


Q ss_pred             EE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          199 VK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       199 ~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+ ++++.+|++..          .+++...+.+|.||+|+|+++.
T Consensus       158 ~~~~g~v~Gv~~~~----------~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       158 QDDQGTVVGVVVKG----------KGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             ECCCCcEEEEEEEe----------CCCeEEEEecceEEEecCCCCC
Confidence            86 56888887742          1112346889999999998875

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.47  E-value=1.8e-13  Score=133.26  Aligned_cols=143  Identities=24%  Similarity=0.368  Sum_probs=103.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccc-------c-------ch---------------h
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQ-------L-------FS---------------A  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~-------~-------~~---------------~  139 (321)
                      ++||||||+|.|||.||+.+++. |++|+|+||....+|.+.. .+.       .       ++               +
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dq   84 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQ   84 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCH
Confidence            69999999999999999999999 8999999998766543211 110       0       00               0


Q ss_pred             -----hhcc-chHHHHHHHcCCCcccCCCe----------------EEEe-cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815          140 -----MVVR-KPAHIFLDELGIDYDEQDNY----------------VVIK-HAALFTSTIMSKLLARPNVKLFNAVAAED  196 (321)
Q Consensus       140 -----~~~~-~~~~~~l~~~g~~~~~~~~~----------------~~~~-~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (321)
                           ++.. ...+.+|+++|++|.+....                +..+ -...+...|.+++.+..+++++.+..+++
T Consensus        85 d~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~  164 (562)
T COG1053          85 DAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLD  164 (562)
T ss_pred             HHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhh
Confidence                 0001 13568899999998655321                1111 24567888999998667889999999999


Q ss_pred             EEEECCE-EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          197 LIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       197 l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      |+.+++. |.|+...+.         .+++...+++|.||+||||.+
T Consensus       165 l~~~~~~~v~Gvv~~~~---------~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         165 LLVDDGGGVAGVVARDL---------RTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             heecCCCcEEEEEEEEe---------cCCcEEEEecCcEEEccCCce
Confidence            9988655 888887542         223557899999999999988

>PRK08244 hypothetical protein; Provisional

Probab=99.47  E-value=2.3e-12  Score=125.18  Aligned_cols=132  Identities=20%  Similarity=0.269  Sum_probs=84.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC--------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--------------  155 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~--------------  155 (321)
                      ++||+||||||+|+++|+.|++. |++|+||||.+.+....  .+     ........+.|+++|+              
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~~~~~--ra-----~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~   73 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKETVPYS--KA-----LTLHPRTLEILDMRGLLERFLEKGRKLPSG   73 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc--ce-----eEecHHHHHHHHhcCcHHHHHhhcccccce
Confidence            48999999999999999999999 99999999986542110  00     1111122222222222              


Q ss_pred             ---------Cccc---CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCC
Q 020815          156 ---------DYDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC  223 (321)
Q Consensus       156 ---------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~  223 (321)
                               ++..   ...+....+...+.+.|.+.+. +.|++++.+++++++..+++.+. +.+..          .+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~----------~~  141 (493)
T PRK08244         74 HFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHAR-SLGVEIFRGAEVLAVRQDGDGVE-VVVRG----------PD  141 (493)
T ss_pred             EEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHH-HcCCeEEeCCEEEEEEEcCCeEE-EEEEe----------CC
Confidence                     1110   0122333455666677766665 57999999999999988777553 22221          01


Q ss_pred             CCceEEEcCeEEEcCCCCC
Q 020815          224 MDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       224 g~~~~i~a~~VI~AtG~~~  242 (321)
                      + ..+++||+||.|+|..+
T Consensus       142 g-~~~i~a~~vVgADG~~S  159 (493)
T PRK08244        142 G-LRTLTSSYVVGADGAGS  159 (493)
T ss_pred             c-cEEEEeCEEEECCCCCh
Confidence            1 25799999999999554

>PRK07190 hypothetical protein; Provisional

Probab=99.47  E-value=1.8e-12  Score=125.33  Aligned_cols=139  Identities=16%  Similarity=0.226  Sum_probs=87.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Cc---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY---  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~---  157 (321)
                      .+||+|||||++|+++|+.|++. |++|+||||.+.+......       ........+.++.+|+         ++   
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~~~~gra-------~~l~~~tle~L~~lGl~~~l~~~~~~~~~~   76 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGPLEVGRA-------DALNARTLQLLELVDLFDELYPLGKPCNTS   76 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcccccccc-------eEeCHHHHHHHHhcChHHHHHhhCccceeE
Confidence            58999999999999999999999 9999999998755321100       0011111112222111         00   


Q ss_pred             ----------------ccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815          158 ----------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (321)
Q Consensus       158 ----------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~  217 (321)
                                      +..    ..+........+...|.+++. +.|++++++++|+++..+++.+... +.       
T Consensus        77 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~-~~Gv~v~~~~~v~~l~~~~~~v~v~-~~-------  147 (487)
T PRK07190         77 SVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLK-EAGAAVKRNTSVVNIELNQAGCLTT-LS-------  147 (487)
T ss_pred             EEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeeEEE-EC-------
Confidence                            000    011122334455556666665 5799999999999999887754422 21       


Q ss_pred             cCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCC
Q 020815          218 HDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM  257 (321)
Q Consensus       218 ~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~  257 (321)
                             ++.+++||+||.|+|     .++.+|+..++++
T Consensus       148 -------~g~~v~a~~vVgADG-----~~S~vR~~lgi~f  175 (487)
T PRK07190        148 -------NGERIQSRYVIGADG-----SRSFVRNHFNVPF  175 (487)
T ss_pred             -------CCcEEEeCEEEECCC-----CCHHHHHHcCCCc
Confidence                   125899999999999     4566666655544

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.46  E-value=7.9e-13  Score=128.56  Aligned_cols=137  Identities=29%  Similarity=0.418  Sum_probs=90.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCC-ccc--cCc----ccchhhh-ccchHHHHHHHcCCCcccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGG-GAW--LGG----QLFSAMV-VRKPAHIFLDELGIDYDEQ  160 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg-~~~--~~g----~~~~~~~-~~~~~~~~l~~~g~~~~~~  160 (321)
                      +|||||||||+||+.||+.|++. |.+|+|||++. .+|+ .|.  .+|    .+...+- ......+.++..++.+...
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHc-CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            69999999999999999999999 99999999973 4443 111  111    1111110 0011223444555544321


Q ss_pred             C----CeEE----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815          161 D----NYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (321)
Q Consensus       161 ~----~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~  232 (321)
                      .    ....    ..+...|...+.+.+.+..|++++.. .|+++..+++++.+|.+.+              +..+.|+
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~d--------------G~~I~Ak  147 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQD--------------GLEFRAK  147 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECC--------------CCEEECC
Confidence            1    1111    22345667777777776679998754 7899998999999998853              3689999


Q ss_pred             eEEEcCCCCC
Q 020815          233 VVVSSCGHDG  242 (321)
Q Consensus       233 ~VI~AtG~~~  242 (321)
                      .||+|||.+.
T Consensus       148 ~VIlATGTFL  157 (618)
T PRK05192        148 AVVLTTGTFL  157 (618)
T ss_pred             EEEEeeCcch
Confidence            9999999653

>PRK06184 hypothetical protein; Provisional

Probab=99.46  E-value=2.2e-12  Score=125.62  Aligned_cols=141  Identities=21%  Similarity=0.300  Sum_probs=88.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Cccc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE-  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~~-  159 (321)
                      ++||+|||||++|+++|+.|++. |++|+||||.+.+..... +      ........+.|+++|+         ++.. 
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~~~~~r-a------~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~   74 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEPFPGSR-G------KGIQPRTQEVFDDLGVLDRVVAAGGLYPPM   74 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcCcc-c------eeecHHHHHHHHHcCcHHHHHhcCccccce
Confidence            58999999999999999999999 999999999865432110 0      0111222333333332         1100 


Q ss_pred             -----CC-------------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeeccee
Q 020815          160 -----QD-------------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (321)
Q Consensus       160 -----~~-------------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~  215 (321)
                           ..                   ......+...+.+.|.+.+. +.|++++++++++++..+++.+.......    
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~i~~~~~~v~v~~~~~----  149 (502)
T PRK06184         75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLA-ELGHRVEFGCELVGFEQDADGVTARVAGP----  149 (502)
T ss_pred             eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEEcCCcEEEEEEeC----
Confidence                 00                   01122334456667777776 46999999999999988776554332110    


Q ss_pred             cccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       216 ~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                         +     +..+++||+||.|+|..     |.+|+..++.
T Consensus       150 ---~-----~~~~i~a~~vVgADG~~-----S~vR~~lgi~  177 (502)
T PRK06184        150 ---A-----GEETVRARYLVGADGGR-----SFVRKALGIG  177 (502)
T ss_pred             ---C-----CeEEEEeCEEEECCCCc-----hHHHHhCCCC
Confidence               1     23689999999999954     4455544433

>PLN02985 squalene monooxygenase

Probab=99.46  E-value=3.1e-12  Score=124.34  Aligned_cols=136  Identities=25%  Similarity=0.373  Sum_probs=88.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      .++||+|||||++|+++|+.|++. |.+|+|+||........+  +     ........+.|+++|+.            
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~~~~~~~--g-----~~L~p~g~~~L~~LGl~d~l~~~~~~~~~  113 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLREPERMM--G-----EFMQPGGRFMLSKLGLEDCLEGIDAQKAT  113 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCCCCcccc--c-----cccCchHHHHHHHcCCcchhhhccCcccc
Confidence            468999999999999999999999 999999999743211111  0     11111222233333321            


Q ss_pred             --------------cccCC------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec
Q 020815          157 --------------YDEQD------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM  216 (321)
Q Consensus       157 --------------~~~~~------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~  216 (321)
                                    +....      ......+...+.+.|++++.+..|++++.+ +++++..+++.+.+|....     
T Consensus       114 ~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~-----  187 (514)
T PLN02985        114 GMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN-----  187 (514)
T ss_pred             cEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc-----
Confidence                          11000      011233456788889998876778999876 6888877778777887642     


Q ss_pred             ccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          217 NHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       217 ~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                           .+|+..+++||.||.|+|.++.
T Consensus       188 -----~dG~~~~~~AdLVVgADG~~S~  209 (514)
T PLN02985        188 -----SAGEETTALAPLTVVCDGCYSN  209 (514)
T ss_pred             -----CCCCEEEEECCEEEECCCCchH
Confidence                 1223457889999999996553

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.46  E-value=3.3e-13  Score=121.45  Aligned_cols=140  Identities=25%  Similarity=0.327  Sum_probs=96.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      ..+||||||||.+|.+.|+.|++. |.||.||||.-.--.       ...--+..+.....|.++|+.            
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~EPd-------RivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~  115 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSEPD-------RIVGELLQPGGYLALSKLGLEDCVEGIDAQRVT  115 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhC-CcEEEEEecccccch-------HHHHHhcCcchhHHHHHhCHHHHhhcccceEee
Confidence            368999999999999999999999 999999999632110       000011122222334444432            


Q ss_pred             --------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          157 --------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       157 --------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                                    |...    +.-....|...|.+.|.+++...+|+++.++ .|.+++.|++.|.||+..+       
T Consensus       116 Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~-------  187 (509)
T KOG1298|consen  116 GYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKN-------  187 (509)
T ss_pred             eeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEec-------
Confidence                          1100    0001123456788999999998999999988 7889998999999999864       


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCCCcch
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGPFGAT  247 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~~~~~  247 (321)
                         +.++..+..|...|+|+|.++.+.++
T Consensus       188 ---k~gee~~~~ApLTvVCDGcfSnlRrs  213 (509)
T KOG1298|consen  188 ---KEGEEVEAFAPLTVVCDGCFSNLRRS  213 (509)
T ss_pred             ---CCCceEEEecceEEEecchhHHHHHH
Confidence               22345788899999999988765543

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.46  E-value=1.8e-12  Score=128.05  Aligned_cols=44  Identities=30%  Similarity=0.502  Sum_probs=38.9

Q ss_pred             ccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..+.++||||||+|++|++||+.|++. |.+|+||||....||++
T Consensus         5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~gG~~   48 (574)
T PRK12842          5 TNELTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcc
Confidence            344579999999999999999999999 99999999998877654

>PRK09126 hypothetical protein; Provisional

Probab=99.46  E-value=3e-12  Score=120.63  Aligned_cols=135  Identities=19%  Similarity=0.301  Sum_probs=86.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccchhhhccchHHHHHHHcCCC------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      ++||+|||||++|+++|+.|++. |++|+|+||...+.-... ..|   ..........+.|+++|+.            
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g---~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~   78 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPLAALADPAFDG---REIALTHASREILQRLGAWDRIPEDEISPLR   78 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCcccccCCCCch---hHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence            58999999999999999999999 999999999875321000 000   0011122233444444431            


Q ss_pred             --------------ccc----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          157 --------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       157 --------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                                    +..    ...+....+...+.+.|++.+.+..|++++++++++++..+++.+ .|.+.        
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~-~v~~~--------  149 (392)
T PRK09126         79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGA-QVTLA--------  149 (392)
T ss_pred             eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeE-EEEEc--------
Confidence                          000    000111223345667778877666899999999999998766643 34332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                            ++.+++||+||.|+|..+.
T Consensus       150 ------~g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        150 ------NGRRLTARLLVAADSRFSA  168 (392)
T ss_pred             ------CCCEEEeCEEEEeCCCCch
Confidence                  1257999999999996554

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.46  E-value=2.6e-12  Score=120.45  Aligned_cols=133  Identities=14%  Similarity=0.283  Sum_probs=87.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc---
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---  158 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~---  158 (321)
                      +||+|||||++|+++|+.|++. |++|+|+|+.+.........   ...........+.|+++|+         ++.   
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~---~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   77 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKSVKSPEFFKD---IRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIY   77 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCCCCCCccCcC---ceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEE
Confidence            6999999999999999999999 99999999874321110000   0011122223334444333         110   


Q ss_pred             ---cC------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCC
Q 020815          159 ---EQ------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC  223 (321)
Q Consensus       159 ---~~------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~  223 (321)
                         ..            ..+.+..+...+.+.|++++.+..+++++.+++++++..+++.+. +...             
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~-------------  143 (374)
T PRK06617         78 VVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFD-------------  143 (374)
T ss_pred             EEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEc-------------
Confidence               00            112334566888899999988666799999999999988776543 3331             


Q ss_pred             CCceEEEcCeEEEcCCCCCC
Q 020815          224 MDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       224 g~~~~i~a~~VI~AtG~~~~  243 (321)
                       + .+++||.||.|+|.+|.
T Consensus       144 -~-~~~~adlvIgADG~~S~  161 (374)
T PRK06617        144 -D-KQIKCNLLIICDGANSK  161 (374)
T ss_pred             -C-CEEeeCEEEEeCCCCch
Confidence             1 37999999999995553

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.46  E-value=5.6e-14  Score=133.89  Aligned_cols=135  Identities=28%  Similarity=0.415  Sum_probs=38.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhh------hccchHHHHHHHcCC----CcccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM------VVRKPAHIFLDELGI----DYDEQD  161 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~------~~~~~~~~~l~~~g~----~~~~~~  161 (321)
                      ||||||||++|++||+.+++. |++|+|||+...+||....++......      ....-..++++.+..    +.....
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~   79 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRY   79 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST------------
T ss_pred             CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccc
Confidence            899999999999999999999 999999999999988755444321111      111111223332221    001000


Q ss_pred             CeE--EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          162 NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       162 ~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      .+.  ...+...+... ++++..+.|+++++++.+.+++.++++|.+|.+.+          ..| ..+++||.||+|||
T Consensus        80 ~~~~~~~~~~~~~~~~-l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~----------~~g-~~~i~A~~~IDaTG  147 (428)
T PF12831_consen   80 GWVSNVPFDPEVFKAV-LDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVET----------KSG-RKEIRAKVFIDATG  147 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccc----------ccc-cccccccccccccc
Confidence            110  11222333333 44444578999999999999999999999998853          112 47899999999999

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.45  E-value=2.7e-12  Score=120.81  Aligned_cols=136  Identities=21%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcc-cchhhhccchHHHHHHHcCCC----------cc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ-LFSAMVVRKPAHIFLDELGID----------YD  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~-~~~~~~~~~~~~~~l~~~g~~----------~~  158 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+...-  ...+. -...........+.|+++|+.          +.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~~~~~--~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGEPKAF--EPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCCcccC--CCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            48999999999999999999999 999999998742100  00000 000011223344445554431          00


Q ss_pred             ------c-------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815          159 ------E-------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       159 ------~-------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~  219 (321)
                            .             ...+........+...|++++.+..+++++.+++++++..+++.+. +.+.         
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~---------  149 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLE---------  149 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEEC---------
Confidence                  0             0011111222456667777776667899999999999988776543 3332         


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCCC
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                           ++.+++||.||.|+|..+.
T Consensus       150 -----~g~~~~~~lvIgADG~~S~  168 (384)
T PRK08849        150 -----SGAEIEAKWVIGADGANSQ  168 (384)
T ss_pred             -----CCCEEEeeEEEEecCCCch
Confidence                 2268999999999995543

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.45  E-value=2.6e-12  Score=122.03  Aligned_cols=136  Identities=18%  Similarity=0.306  Sum_probs=85.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Cc---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY---  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~---  157 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+.+....... +..    ........+.|+++|+         ++   
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~-g~~----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   91 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAEAAAAK-GQA----YALSLLSARIFEGIGVWEKILPQIGKFRQI   91 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCccccCCC-CcE----EEechHHHHHHHHCChhhhhHhhcCCccEE
Confidence            58999999999999999999999 999999999875421100 000    0111112223333222         11   


Q ss_pred             -------------ccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815          158 -------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       158 -------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~  220 (321)
                                   ...    ..+........+.+.|++++.+..+++++++++++++..+++.+. |.+.+         
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~---------  161 (415)
T PRK07364         92 RLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI---------  161 (415)
T ss_pred             EEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc---------
Confidence                         000    011111222457777888877556899999999999987766543 33321         


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCC
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                        +++..+++||+||.|+|.++.
T Consensus       162 --~~~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        162 --EGKQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             --CCcceEEeeeEEEEeCCCCch
Confidence              012357999999999996654

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.45  E-value=2.4e-12  Score=127.20  Aligned_cols=60  Identities=22%  Similarity=0.305  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP  243 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~~  243 (321)
                      +...|.+.+. +.|++++++++|++|+.++++|.||.+...           +...+++| |.||+|+|+++.
T Consensus       219 l~~~L~~~a~-~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~-----------~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        219 LVARLLKSAE-DLGVRIWESAPARELLREDGRVAGAVVETP-----------GGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEEEEEEEEC-----------CcEEEEEeCCEEEEcCCCccc
Confidence            4456666665 679999999999999988899999887420           12257899 999999999874

>PRK06126 hypothetical protein; Provisional

Probab=99.44  E-value=3.4e-12  Score=125.51  Aligned_cols=136  Identities=15%  Similarity=0.187  Sum_probs=84.7

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHH---------HcCCCccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD---------ELGIDYDE  159 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~---------~~g~~~~~  159 (321)
                      .++||+|||||++|+++|+.|++. |++|+||||.+.+...  ..+     ........+.|+         +.+.+...
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~~~~--~ra-----~~l~~r~~e~L~~lGl~~~l~~~g~~~~~   77 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGTAFN--PKA-----NTTSARSMEHFRRLGIADEVRSAGLPVDY   77 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCC--Ccc-----ccCCHHHHHHHHhcChHHHHHhhcCCccc
Confidence            368999999999999999999999 9999999997643211  000     011111122222         22211100


Q ss_pred             ----------CC-------------C---------------eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815          160 ----------QD-------------N---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG  201 (321)
Q Consensus       160 ----------~~-------------~---------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~  201 (321)
                                .+             .               .........+...|++.+.+..+++++++++++++..++
T Consensus        78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~  157 (545)
T PRK06126         78 PTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA  157 (545)
T ss_pred             cCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC
Confidence                      00             0               001123344666777777656799999999999998887


Q ss_pred             CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +.+... +.+      .   .+++..++++|+||.|+|.++
T Consensus       158 ~~v~v~-~~~------~---~~g~~~~i~ad~vVgADG~~S  188 (545)
T PRK06126        158 DGVTAT-VED------L---DGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             CeEEEE-EEE------C---CCCcEEEEEEEEEEecCCcch
Confidence            766532 221      0   112346899999999999554

>PRK12839 hypothetical protein; Provisional

Probab=99.44  E-value=2.5e-12  Score=126.50  Aligned_cols=41  Identities=34%  Similarity=0.581  Sum_probs=37.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .++||||||+|.+|+++|+.|++. |.+|+||||...+||.+
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~~   47 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTCGGAT   47 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCccc
Confidence            378999999999999999999999 99999999998777765

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.44  E-value=3.8e-12  Score=119.76  Aligned_cols=132  Identities=25%  Similarity=0.396  Sum_probs=87.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCcccchhhhccchHHHHHHHcCCCcc---------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGIDYD---------  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg--~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~---------  158 (321)
                      .+||+|||||++|+++|+.|++. |++|+|+|+...+..  ..|.    ...........+.|+.+|+.-.         
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~----~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~   79 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPADDAWD----SRVYAISPSSQAFLERLGVWQALDAARLAPV   79 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCccccCCCCC----CceEeecHHHHHHHHHcCchhhhhhhcCCcc
Confidence            58999999999999999999999 999999999876432  1111    1111222333444444443110         


Q ss_pred             -------cC-------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          159 -------EQ-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       159 -------~~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                             ..             +......+...+.+.|.+++.+..+++++ +++++++..+++.+. +.+.+       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~-------  150 (388)
T PRK07608         80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLAD-------  150 (388)
T ss_pred             eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECC-------
Confidence                   00             01112334567888888888754459999 889999887666543 44421       


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                             +.+++||.||.|+|..+
T Consensus       151 -------g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        151 -------GQVLRADLVVGADGAHS  167 (388)
T ss_pred             -------CCEEEeeEEEEeCCCCc
Confidence                   25799999999999665

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.44  E-value=4.2e-12  Score=121.51  Aligned_cols=146  Identities=18%  Similarity=0.355  Sum_probs=88.5

Q ss_pred             ccEEEECCChHHHHHHHHhhc----CCCCeEEEEeccCCCCCcc--c--cCcc-cchhhhccchHHHHHHHcCCC-----
Q 020815           91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGA--W--LGGQ-LFSAMVVRKPAHIFLDELGID-----  156 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~liEk~~~~gg~~--~--~~g~-~~~~~~~~~~~~~~l~~~g~~-----  156 (321)
                      |||+|||||++|+++|+.|++    . |++|+|||+.+.+.-..  +  ..+. ............+.|+.+|+.     
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~   79 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQS   79 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhh
Confidence            699999999999999999999    7 99999999954222100  0  0000 001112223334444444431     


Q ss_pred             ---------------------cccC---CCeEEEecHHHHHHHHHHHHHcCC--CcEEEcCceEEEEEEE------CCEE
Q 020815          157 ---------------------YDEQ---DNYVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVK------GGRV  204 (321)
Q Consensus       157 ---------------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~l~~~------~~~v  204 (321)
                                           |+..   ..+....+...+.+.|++++.+..  +++++++++++++..+      ++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~  159 (437)
T TIGR01989        80 DRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW  159 (437)
T ss_pred             hcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence                                 1100   111223455677788888887555  6999999999999753      1222


Q ss_pred             EEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       205 ~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                      ..|...              ++.+++||+||.|+|.+     |.+|+..++.
T Consensus       160 v~v~~~--------------~g~~i~a~llVgADG~~-----S~vR~~~gi~  192 (437)
T TIGR01989       160 VHITLS--------------DGQVLYTKLLIGADGSN-----SNVRKAANID  192 (437)
T ss_pred             eEEEEc--------------CCCEEEeeEEEEecCCC-----ChhHHHcCCC
Confidence            223332              23689999999999955     4455544443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.43  E-value=4.8e-12  Score=119.88  Aligned_cols=137  Identities=15%  Similarity=0.216  Sum_probs=85.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-ccchhhhccchHHHHHHHcCCC------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+.......... .............+.|+++|+.            
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~   80 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS   80 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence            48999999999999999999999 999999999863211000000 0001111223334444444431            


Q ss_pred             --------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          157 --------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       157 --------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                                    |...    ..+....+...+.+.|++.+. +.+++++++++++++..+++.+. |.+.        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~--------  150 (405)
T PRK05714         81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLH-DSDIGLLANARLEQMRRSGDDWL-LTLA--------  150 (405)
T ss_pred             eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHh-cCCCEEEcCCEEEEEEEcCCeEE-EEEC--------
Confidence                          0000    011122344567778887776 56999999999999987766543 3332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                            ++.+++||.||.|+|.++.
T Consensus       151 ------~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        151 ------DGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             ------CCCEEEeCEEEEecCCCch
Confidence                  2257999999999996553

>PRK07045 putative monooxygenase; Reviewed

Probab=99.43  E-value=4.6e-12  Score=119.30  Aligned_cols=128  Identities=20%  Similarity=0.318  Sum_probs=84.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC---CccccCcccchhhhccchHHHHHHHcCC-----------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG---GGAWLGGQLFSAMVVRKPAHIFLDELGI-----------  155 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g---g~~~~~g~~~~~~~~~~~~~~~l~~~g~-----------  155 (321)
                      .+||+|||||++|+++|+.|++. |++|+|+|+.+.+.   +...          ......+.|+++|+           
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~----------l~~~~~~~L~~lGl~~~~~~~~~~~   73 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARNRAQNGADL----------LKPSGIGVVRAMGLLDDVFAAGGLR   73 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcccCCCcccc----------cCccHHHHHHHcCCHHHHHhccccc
Confidence            58999999999999999999999 99999999987542   1110          01111111111111           


Q ss_pred             ----------------CcccC--CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-EEEEEEeecceec
Q 020815          156 ----------------DYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSM  216 (321)
Q Consensus       156 ----------------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-v~gv~~~~~~~~~  216 (321)
                                      ++...  ..+....+...+.+.|++++.+..|++++++++++++..+++. +..|...+     
T Consensus        74 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-----  148 (388)
T PRK07045         74 RDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD-----  148 (388)
T ss_pred             ccceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC-----
Confidence                            01000  1122223445677888888766789999999999999876543 34455422     


Q ss_pred             ccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          217 NHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       217 ~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                               +.++++|+||.|+|..+
T Consensus       149 ---------g~~~~~~~vIgADG~~S  165 (388)
T PRK07045        149 ---------GERVAPTVLVGADGARS  165 (388)
T ss_pred             ---------CCEEECCEEEECCCCCh
Confidence                     25799999999999554

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.43  E-value=3.3e-12  Score=118.27  Aligned_cols=133  Identities=26%  Similarity=0.372  Sum_probs=85.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEE-eccCCCCCccccC--cccchhhh------ccchHHHHHHHcCCCcccC--
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAII-EQSVSPGGGAWLG--GQLFSAMV------VRKPAHIFLDELGIDYDEQ--  160 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~li-Ek~~~~gg~~~~~--g~~~~~~~------~~~~~~~~l~~~g~~~~~~--  160 (321)
                      ||+|||||.||+.||+++++. |.+|+|+ ++.+.++.-..+.  +......+      ......+..+..++.+...  
T Consensus         1 DViVVGgG~AG~eAA~aaAr~-G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~   79 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARM-GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNR   79 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEEST
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccc
Confidence            899999999999999999999 9999999 4444443311110  00100000      0112223344444433321  


Q ss_pred             ------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815          161 ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (321)
Q Consensus       161 ------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V  234 (321)
                            .......+...|...+.+.+.+.+|++++.. +|++|..++++|.||.+.+              +..+.||.|
T Consensus        80 skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~--------------g~~~~a~~v  144 (392)
T PF01134_consen   80 SKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKD--------------GEEIEADAV  144 (392)
T ss_dssp             TS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETT--------------SEEEEECEE
T ss_pred             cCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCC--------------CCEEecCEE
Confidence                  1122345667888888888887799999865 8999999999999999853              378999999


Q ss_pred             EEcCCC
Q 020815          235 VSSCGH  240 (321)
Q Consensus       235 I~AtG~  240 (321)
                      |+|||-
T Consensus       145 VlaTGt  150 (392)
T PF01134_consen  145 VLATGT  150 (392)
T ss_dssp             EE-TTT
T ss_pred             EEeccc
Confidence            999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.43  E-value=4.3e-12  Score=124.51  Aligned_cols=142  Identities=20%  Similarity=0.243  Sum_probs=91.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchh---------------------------h--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA---------------------------M--  140 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~---------------------------~--  140 (321)
                      +|||+|||||+.|+++|+.|+++ |++|+|||++....|+++....+...                           .  
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~   84 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALR-GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV   84 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence            58999999999999999999999 99999999986554444322111000                           0  


Q ss_pred             -------h-ccch-------HHHHHHHcCCCcccC-------------CC----eEE---EecHHHHHHHHHHHHHcCCC
Q 020815          141 -------V-VRKP-------AHIFLDELGIDYDEQ-------------DN----YVV---IKHAALFTSTIMSKLLARPN  185 (321)
Q Consensus       141 -------~-~~~~-------~~~~l~~~g~~~~~~-------------~~----~~~---~~~~~~~~~~l~~~~~~~~g  185 (321)
                             + ....       ..+++...|++....             ..    +..   ..+...+...+...+. +.|
T Consensus        85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~-~~G  163 (546)
T PRK11101         85 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK-EHG  163 (546)
T ss_pred             cccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHH-hCC
Confidence                   0 0000       011223334331110             00    000   2244566666666665 679


Q ss_pred             cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       186 v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++++++++|+++..+++++.+|.+.+.         .+++..+|+|+.||+|+|.++
T Consensus       164 a~i~~~t~V~~i~~~~~~v~gv~v~d~---------~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        164 AQILTYHEVTGLIREGDTVCGVRVRDH---------LTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             CEEEeccEEEEEEEcCCeEEEEEEEEc---------CCCcEEEEECCEEEECCChhH
Confidence            999999999999988889998887431         112336899999999999654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.42  E-value=4.4e-12  Score=118.72  Aligned_cols=139  Identities=23%  Similarity=0.325  Sum_probs=91.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-------ccCcccchh------hhcc--chHHHHHHHc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-------WLGGQLFSA------MVVR--KPAHIFLDEL  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~-------~~~g~~~~~------~~~~--~~~~~~l~~~  153 (321)
                      +|||+|||||+.|+++|++|+++ |.++|+||||...++...       .+.|..+..      +...  ....++.+++
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~   82 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL   82 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999997 239999999988765221       111111111      1000  0123455556


Q ss_pred             CCCcccCCCeEE------------------------------------------------------EecHHHHHHHHHHH
Q 020815          154 GIDYDEQDNYVV------------------------------------------------------IKHAALFTSTIMSK  179 (321)
Q Consensus       154 g~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~l~~~  179 (321)
                      +++|...+.+.+                                                      ..+...+...|.+.
T Consensus        83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~  162 (429)
T COG0579          83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE  162 (429)
T ss_pred             CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence            655544322111                                                      22346677888888


Q ss_pred             HHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       180 ~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +. ..|++++++++|++|..+++.++.+.+..            |+.. ++||.||.|.|+++
T Consensus       163 a~-~~g~~i~ln~eV~~i~~~~dg~~~~~~~~------------g~~~-~~ak~Vin~AGl~A  211 (429)
T COG0579         163 AQ-ANGVELRLNTEVTGIEKQSDGVFVLNTSN------------GEET-LEAKFVINAAGLYA  211 (429)
T ss_pred             HH-HcCCEEEecCeeeEEEEeCCceEEEEecC------------CcEE-EEeeEEEECCchhH
Confidence            87 45999999999999998776544444432            1223 99999999999665

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.42  E-value=6.7e-12  Score=118.29  Aligned_cols=135  Identities=20%  Similarity=0.319  Sum_probs=85.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCccc--chhhhccchHHHHHHHcCCC----------c
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL--FSAMVVRKPAHIFLDELGID----------Y  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~--~~~~~~~~~~~~~l~~~g~~----------~  157 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+.....   +..+..  ...........+.|+.+|+.          +
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~~---~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAP---FDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY   80 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCCCc---ccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence            68999999999999999999999 99999999975321   000000  00011112223333333321          0


Q ss_pred             ---------------ccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          158 ---------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       158 ---------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                                     +..    ..+....+...+.+.|++++.+.+|++++.+++++++..+++.+ .|.+.        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~--------  151 (391)
T PRK08020         81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGW-ELTLA--------  151 (391)
T ss_pred             ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE-EEEEC--------
Confidence                           000    11112345567778888888755699999999999998766643 23332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                            ++.+++||.||.|+|..+.
T Consensus       152 ------~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        152 ------DGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             ------CCCEEEeCEEEEeCCCCch
Confidence                  1257999999999996554

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.42  E-value=3.5e-12  Score=125.94  Aligned_cols=61  Identities=20%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~~  243 (321)
                      .+...|+++++ +.|++++.++.+++|+.++++|.||.+..           ++...++.| +.||+|||+++.
T Consensus       222 ~l~~aL~~~~~-~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~-----------~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        222 ALIGRLLYSLR-ARGVRILTQTDVESLETDHGRVIGATVVQ-----------GGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEeeCCEEEEEEEec-----------CCeEEEEEccceEEECCCCccc
Confidence            45566777776 68999999999999998889999998742           113356886 789999999875

>PRK06834 hypothetical protein; Provisional

Probab=99.42  E-value=4.5e-12  Score=122.71  Aligned_cols=131  Identities=20%  Similarity=0.236  Sum_probs=83.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------C----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D----  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~----  156 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+...+.........      ......+.|+++|+         .    
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~~~~~~~Ra~~------l~~~s~~~L~~lGl~~~l~~~~~~~~~~   75 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPNQELVGSRAGG------LHARTLEVLDQRGIADRFLAQGQVAQVT   75 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCcceee------ECHHHHHHHHHcCcHHHHHhcCCccccc
Confidence            58999999999999999999999 9999999998643210000111      11122222222222         0    


Q ss_pred             --------cccC---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          157 --------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       157 --------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                              +...   ..+........+.+.|.+.+. +.|++++++++++++..+++.+. +...              +
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~v~~~~~~v~-v~~~--------------~  139 (488)
T PRK06834         76 GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVG-ELGVPIYRGREVTGFAQDDTGVD-VELS--------------D  139 (488)
T ss_pred             eeeeEecccccCCCCCCccccccHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCeEE-EEEC--------------C
Confidence                    0000   011122234556666666665 56999999999999988777543 2221              1


Q ss_pred             ceEEEcCeEEEcCCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~  243 (321)
                      +.+++||+||.|+|..+.
T Consensus       140 g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        140 GRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             CCEEEeCEEEEecCCCCC
Confidence            257999999999996654

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.42  E-value=4.4e-12  Score=124.46  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=86.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-------------  156 (321)
                      ++||+|||||++|+++|+.|++. |++|+||||...+.....  +     ........+.|+++|+.             
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~~~~~r--a-----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTLYDLPR--A-----VGIDDEALRVLQAIGLADEVLPHTTPNHGM   81 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCc--e-----eeeCHHHHHHHHHcCChhHHHhhcccCCce
Confidence            68999999999999999999999 999999999875432110  0     11112223333333321             


Q ss_pred             -cc-cCC--------------CeE--EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          157 -YD-EQD--------------NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       157 -~~-~~~--------------~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                       |. ..+              .+.  ...+...+.+.|.+.+.+..|++++++++++++..+++.+. +....       
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~-------  153 (538)
T PRK06183         82 RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTD-------  153 (538)
T ss_pred             EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEc-------
Confidence             10 000              010  12233456667777776557999999999999998877654 22221       


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         .+|+..+++||+||.|+|.++
T Consensus       154 ---~~G~~~~i~ad~vVgADG~~S  174 (538)
T PRK06183        154 ---ADGQRETVRARYVVGCDGANS  174 (538)
T ss_pred             ---CCCCEEEEEEEEEEecCCCch
Confidence               122346899999999999544

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.41  E-value=9.5e-12  Score=117.13  Aligned_cols=129  Identities=24%  Similarity=0.366  Sum_probs=84.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------c---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y---  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~---  157 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+.+... . ...      ......+.|+++|+.         +   
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~~~~-r-~~~------l~~~s~~~l~~lgl~~~~~~~~~~~~~~   77 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPYADL-R-TTA------LLGPSIRFLERLGLWARLAPHAAPLQSM   77 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCCCCc-c-hhh------CcHHHHHHHHHhCchhhhHhhcceeeEE
Confidence            68999999999999999999999 9999999998654211 0 000      111122333333321         0   


Q ss_pred             ---ccC------------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec
Q 020815          158 ---DEQ------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM  216 (321)
Q Consensus       158 ---~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~  216 (321)
                         +..                  ..+.+..+...+.+.|++++.+..++. +++++|+++..+++.+. +.+.      
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-v~~~------  149 (388)
T PRK07494         78 RIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVT-VTLA------  149 (388)
T ss_pred             EEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEE-EEEC------
Confidence               000                  111223445677788888887555677 77899999987776554 3332      


Q ss_pred             ccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          217 NHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       217 ~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                              ++.+++||.||.|+|..+.
T Consensus       150 --------~g~~~~a~~vI~AdG~~S~  168 (388)
T PRK07494        150 --------DGTTLSARLVVGADGRNSP  168 (388)
T ss_pred             --------CCCEEEEeEEEEecCCCch
Confidence                    1257999999999996553

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.41  E-value=8.9e-12  Score=118.08  Aligned_cols=134  Identities=19%  Similarity=0.294  Sum_probs=86.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCcccchhhhccchHHHHHHHcCCCcc----------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD----------  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~----------  158 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+. +...-... .  ............+.|+++|+.-.          
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~~~~~~~~~~-~--~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~   79 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQLPEEALNEL-P--DVRVSALSRSSEHILRNLGAWQGIEARRAAPYI   79 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCCCCcccccCC-C--CcceecccHHHHHHHHhCCchhhhhhhhCCccc
Confidence            58999999999999999999999 9999999996 22110000 0  00011122344455555554100          


Q ss_pred             ------cC--------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          159 ------EQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       159 ------~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                            ..              ..+....+...+.+.|++++.+..+++++.+++++++..+++.+. |...        
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~~--------  150 (405)
T PRK08850         80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTLD--------  150 (405)
T ss_pred             EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEEC--------
Confidence                  00              001112234566678888887667899999999999987766443 3332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                            ++.+++||+||.|+|..+
T Consensus       151 ------~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        151 ------NGQALTAKLVVGADGANS  168 (405)
T ss_pred             ------CCCEEEeCEEEEeCCCCC
Confidence                  225799999999999554

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.41  E-value=1.1e-12  Score=124.66  Aligned_cols=136  Identities=21%  Similarity=0.266  Sum_probs=90.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHHHH----HcCCCcccC-CC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLD----ELGIDYDEQ-DN  162 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~l~----~~g~~~~~~-~~  162 (321)
                      .+||+||||+|++|..+|++|++. |++|+|+|+....||+|.+-||++++.+.+... .+.+.    .+|+..... -+
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id   81 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID   81 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence            369999999999999999999999 999999999878999999999999998877643 24444    355544332 11


Q ss_pred             eEEEe-cHH---HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          163 YVVIK-HAA---LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       163 ~~~~~-~~~---~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      +..+. ...   .....-.+.+.+.++++++.++.   -..+++.+   .+..       .     +..+++++.+|+||
T Consensus        82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a---~f~~~~~v---~V~~-------~-----~~~~~~a~~iiIAT  143 (454)
T COG1249          82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA---RFVDPHTV---EVTG-------E-----DKETITADNIIIAT  143 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE---EECCCCEE---EEcC-------C-----CceEEEeCEEEEcC
Confidence            11111 111   11222234455567999988731   12233432   2211       0     23789999999999


Q ss_pred             CCCCC
Q 020815          239 GHDGP  243 (321)
Q Consensus       239 G~~~~  243 (321)
                      |....
T Consensus       144 GS~p~  148 (454)
T COG1249         144 GSRPR  148 (454)
T ss_pred             CCCCc
Confidence            96653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.41  E-value=2.9e-12  Score=115.31  Aligned_cols=54  Identities=28%  Similarity=0.413  Sum_probs=50.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~  144 (321)
                      +|||+|||+||+|..||+.+++. |++++.||++...||+|.+.||++++.+.+.
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~LGGTcLnvGcIPSKALL~n   92 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGTLGGTCLNVGCIPSKALLNN   92 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCccCceeeeccccccHHHhhh
Confidence            79999999999999999999999 9999999999999999999999988766554

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.40  E-value=1.6e-12  Score=125.40  Aligned_cols=136  Identities=21%  Similarity=0.269  Sum_probs=87.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch----HHHHHHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~~~~-~~~~  164 (321)
                      +|||+|||||++|+.+|..|++. |++|+|||+.+..||.|++.||++.+.+....    ..+.+..+|+.+... -++.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            69999999999999999999999 99999999987899999999999988765532    123445566654321 0111


Q ss_pred             EE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      .. .....+.+.+   ++.+.+..|++++.++ +.-  .+.+.+ .|...            +++..++++|+||+|||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~--~~~~~v-~v~~~------------~g~~~~~~~d~lViATGs  146 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKF--TGGNTL-EVTGE------------DGKTTVIEFDNAIIAAGS  146 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEE-EEecC------------CCceEEEEcCEEEEeCCC
Confidence            00 0111111111   2233446799999874 222  233332 22221            112357999999999997


Q ss_pred             CC
Q 020815          241 DG  242 (321)
Q Consensus       241 ~~  242 (321)
                      ..
T Consensus       147 ~p  148 (471)
T PRK06467        147 RP  148 (471)
T ss_pred             CC
Confidence            54

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.40  E-value=1.6e-11  Score=120.73  Aligned_cols=135  Identities=23%  Similarity=0.330  Sum_probs=85.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------cc-
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD-  158 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~-  158 (321)
                      .++||+|||||++|+++|+.|++. |++|+||||.+......-       .........+.|+++|+.         +. 
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~~~~~r-------a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~   93 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTLSTGSR-------AICFAKRSLEIFDRLGCGERMVDKGVSWNV   93 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCe-------EEEEcHHHHHHHHHcCCcHHHHhhCceeec
Confidence            468999999999999999999999 999999999875432110       011112223333333321         10 


Q ss_pred             -----c---------C--C--C--eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          159 -----E---------Q--D--N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       159 -----~---------~--~--~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                           .         .  .  .  .....+...+.+.|.+.+.+..+++++++++++++..+++.+.. ....      .
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v-~~~~------~  166 (547)
T PRK08132         94 GKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTL-TVET------P  166 (547)
T ss_pred             eeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEE-EEEC------C
Confidence                 0         0  0  0  01123445566777787775668999999999999887765432 2211      0


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +     ...+++||+||.|+|..+.
T Consensus       167 ~-----g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        167 D-----GPYTLEADWVIACDGARSP  186 (547)
T ss_pred             C-----CcEEEEeCEEEECCCCCcH
Confidence            0     1247999999999995543

>PLN02546 glutathione reductase

Probab=99.40  E-value=6.2e-12  Score=123.10  Aligned_cols=131  Identities=18%  Similarity=0.242  Sum_probs=86.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCcccchhhhccch-HHH---HHHHcCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGI  155 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk---------~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~  155 (321)
                      .+|||+|||+|++|..+|..|++. |++|+|||+         ....||+|.+.||++.+.+.... ..+   ....+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~  156 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW  156 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence            479999999999999999999999 999999996         24679999999999999887642 222   3345666


Q ss_pred             CcccC--CCeEEEe-cH----HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceE
Q 020815          156 DYDEQ--DNYVVIK-HA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (321)
Q Consensus       156 ~~~~~--~~~~~~~-~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (321)
                      .+...  -+|.... +.    ..+... +++..++.|++++.+ +++.+  +...+   .+.               +.+
T Consensus       157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~-~~~~l~~~gV~~i~G-~a~~v--d~~~V---~v~---------------G~~  214 (558)
T PLN02546        157 KYETEPKHDWNTLIANKNAELQRLTGI-YKNILKNAGVTLIEG-RGKIV--DPHTV---DVD---------------GKL  214 (558)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEe-EEEEc--cCCEE---EEC---------------CEE
Confidence            54211  1111111 11    122233 333344678999877 33333  22322   221               257


Q ss_pred             EEcCeEEEcCCCCC
Q 020815          229 MEAKVVVSSCGHDG  242 (321)
Q Consensus       229 i~a~~VI~AtG~~~  242 (321)
                      +.+|+||+|||...
T Consensus       215 ~~~D~LVIATGs~p  228 (558)
T PLN02546        215 YTARNILIAVGGRP  228 (558)
T ss_pred             EECCEEEEeCCCCC
Confidence            89999999999765

>TIGR00275 flavoprotein, HI0933 family

Probab=99.39  E-value=9.1e-12  Score=117.76  Aligned_cols=160  Identities=19%  Similarity=0.333  Sum_probs=109.1

Q ss_pred             EEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc---cc------chh---hh--------------ccchHH
Q 020815           94 VVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---QL------FSA---MV--------------VRKPAH  147 (321)
Q Consensus        94 vIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g---~~------~~~---~~--------------~~~~~~  147 (321)
                      +|||||++|++||+.|++. |++|+|+||+..+|+.....|   +.      ...   ..              ......
T Consensus         1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~   79 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI   79 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence            6999999999999999999 999999999987775432111   00      000   00              011345


Q ss_pred             HHHHHcCCCcccCCC---eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCC
Q 020815          148 IFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (321)
Q Consensus       148 ~~l~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (321)
                      +|++++|+++.....   ++.......+.+.|.+.+. +.|++++.++.|+++..+++. ..+.+.              
T Consensus        80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~-~~v~~~--------------  143 (400)
T TIGR00275        80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELK-ELGVEILTNSKVKSIKKDDNG-FGVETS--------------  143 (400)
T ss_pred             HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCe-EEEEEC--------------
Confidence            678888887765422   1223345778888888876 679999999999999765553 334431              


Q ss_pred             CceEEEcCeEEEcCCCCCCC--cc--hhhhhhhhcCC--cccccCCceeeccc
Q 020815          225 DPNVMEAKVVVSSCGHDGPF--GA--TGVKRLKSIGM--IEEVPGMKALDMNS  271 (321)
Q Consensus       225 ~~~~i~a~~VI~AtG~~~~~--~~--~~~~~~~~~g~--~~~~~~~~~~~~~~  271 (321)
                       ..++.+|.||+|+|+.+..  +.  ++++.+..+|+  .++.|...++....
T Consensus       144 -~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~~  195 (400)
T TIGR00275       144 -GGEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDE  195 (400)
T ss_pred             -CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeCC
Confidence             1568999999999986632  22  45677777777  56777777776544

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.39  E-value=1.6e-11  Score=116.12  Aligned_cols=131  Identities=18%  Similarity=0.328  Sum_probs=84.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------  156 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-------------  156 (321)
                      |||+|||||++|+++|+.|++.+ |++|+|||+.+.........+     ........+.|+++|+.             
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   76 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRA-----SAIAAAARRMLEALGVWDEIAPEAQPITDM   76 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcce-----EEecHHHHHHHHHCCChhhhhhhcCcccEE
Confidence            79999999999999999999982 499999999864211000000     01111222333333320             


Q ss_pred             -----------------ccc----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeeccee
Q 020815          157 -----------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (321)
Q Consensus       157 -----------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~  215 (321)
                                       +..    ...+....+...+.+.|++.+. +.|++++++++|+++..+++.+. +...     
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~-----  149 (403)
T PRK07333         77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE-ALGIDLREATSVTDFETRDEGVT-VTLS-----  149 (403)
T ss_pred             EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCEEE-EEEC-----
Confidence                             000    0112223456778888888886 56999999999999987776543 3332     


Q ss_pred             cccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          216 MNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       216 ~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                               ++.+++||+||.|+|..+
T Consensus       150 ---------~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        150 ---------DGSVLEARLLVAADGARS  167 (403)
T ss_pred             ---------CCCEEEeCEEEEcCCCCh
Confidence                     225799999999999554

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.39  E-value=2.6e-12  Score=123.92  Aligned_cols=136  Identities=21%  Similarity=0.254  Sum_probs=85.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HH-----HHHHcCCCcccCCCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI-----FLDELGIDYDEQDNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~-----~l~~~g~~~~~~~~~  163 (321)
                      +|||+|||+||+|+.||+.|++. |++|+|||+...+||.|.+.||++.+.+..... .+     .+..+|+......++
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~   81 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL   81 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence            59999999999999999999999 999999998778999999999999887765422 11     133456543211111


Q ss_pred             EEE-ecHHHHHH---HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          164 VVI-KHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       164 ~~~-~~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ... ........   .-.+...+..+++++.+. + .+ .+++++. |...            +++..++++|+||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~-~~~~~v~-v~~~------------~g~~~~~~~d~lVIATG  145 (466)
T PRK06115         82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RL-DGVGKVV-VKAE------------DGSETQLEAKDIVIATG  145 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EE-ccCCEEE-EEcC------------CCceEEEEeCEEEEeCC
Confidence            100 00111111   112333445688888774 2 22 2233332 2221            11235799999999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      ...
T Consensus       146 s~p  148 (466)
T PRK06115        146 SEP  148 (466)
T ss_pred             CCC
Confidence            765

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.39  E-value=5.8e-12  Score=120.39  Aligned_cols=134  Identities=19%  Similarity=0.285  Sum_probs=94.8

Q ss_pred             EECCChHHHHHHHHhhcCCCCeEEEEeccCC--CCCccccCccc--------------------chhhh-----------
Q 020815           95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAWLGGQL--------------------FSAMV-----------  141 (321)
Q Consensus        95 IIGgG~aGl~aA~~La~~~G~~V~liEk~~~--~gg~~~~~g~~--------------------~~~~~-----------  141 (321)
                      |||+|.+|++||++|++. |.+|+||||.+.  .||+++.....                    +..+.           
T Consensus         1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l   79 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL   79 (432)
T ss_pred             CCcccHHHHHHHHHHHhC-CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence            799999999999999999 999999999874  35554322110                    00000           


Q ss_pred             c------cchHHHHHHHcCCCcccCC--Ce-------EEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEE
Q 020815          142 V------RKPAHIFLDELGIDYDEQD--NY-------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRV  204 (321)
Q Consensus       142 ~------~~~~~~~l~~~g~~~~~~~--~~-------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v  204 (321)
                      .      ....++||+++|++|....  .+       ........+...|.+.++ +.|++++++++|++|+.+  ++++
T Consensus        80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g~v  158 (432)
T TIGR02485        80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAE-RLGVEIRYGIAVDRIPPEAFDGAH  158 (432)
T ss_pred             HHHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCCCeE
Confidence            0      1134688899998875431  11       111234567788888776 689999999999999887  5788


Q ss_pred             EEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       205 ~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++|....             +..+++||.||+|+|+++.
T Consensus       159 ~gv~~~~-------------~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       159 DGPLTTV-------------GTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             EEEEEcC-------------CcEEEEcCEEEEcCCCccc
Confidence            8887631             1257999999999998764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.39  E-value=9.3e-12  Score=122.42  Aligned_cols=41  Identities=32%  Similarity=0.595  Sum_probs=37.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .++||||||+|++|+++|+.|++. |++|+||||....||++
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~gG~~   46 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHYGGST   46 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCccc
Confidence            379999999999999999999999 99999999988777654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.39  E-value=1e-11  Score=117.21  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=85.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC--CCccccCcccchhhhccchHHHHHHHcCCC---------cc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--GGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~--gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~  158 (321)
                      .+||+|||||++|+++|+.|++. |++|+|+|+.+..  .+.. ..      ........+.|+++|+.         ..
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~-~a------~~l~~~~~~~l~~lGl~~~l~~~~~~~~   73 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSREYVEGRI-RA------GVLEQGTVDLLREAGVGERMDREGLVHD   73 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCcccccccc-ce------eEECHhHHHHHHHcCChHHHHhcCCccC
Confidence            47999999999999999999999 9999999998642  1100 00      11222334455555441         00


Q ss_pred             -----cCC-------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815          159 -----EQD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       159 -----~~~-------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~  220 (321)
                           ..+             ......+...+.+.|++.+. ..|++++++++++++...++....|...          
T Consensus        74 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~-~~gv~v~~~~~v~~i~~~~~~~~~V~~~----------  142 (392)
T PRK08243         74 GIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARL-AAGGPIRFEASDVALHDFDSDRPYVTYE----------  142 (392)
T ss_pred             cEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHH-hCCCeEEEeeeEEEEEecCCCceEEEEE----------
Confidence                 000             01112234566677777765 5799999999999987523323334331          


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCCC
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                       .+|+..+++||+||.|+|..|..
T Consensus       143 -~~G~~~~i~ad~vVgADG~~S~v  165 (392)
T PRK08243        143 -KDGEEHRLDCDFIAGCDGFHGVS  165 (392)
T ss_pred             -cCCeEEEEEeCEEEECCCCCCch
Confidence             11234689999999999977644

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.38  E-value=1.6e-11  Score=115.23  Aligned_cols=132  Identities=24%  Similarity=0.366  Sum_probs=84.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------cc---
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD---  158 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~---  158 (321)
                      ||+|||||++|+++|+.|++. | ++|+|+|+...+.-..  + .............+.++++|+.         ..   
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~~--~-~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   76 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPSAAQP--G-FDARSLALSYGSKQILEKLGLWPKLAPFATPILDIH   76 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCccccCC--C-CCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEE
Confidence            799999999999999999999 9 9999999986542210  0 0000001111122333333321         00   


Q ss_pred             --cC---------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC
Q 020815          159 --EQ---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (321)
Q Consensus       159 --~~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~  221 (321)
                        ..               ....+..+...+.+.|.+.+.+..|++++++++|+++..+++.+. +.+.           
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~-----------  144 (382)
T TIGR01984        77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLD-----------  144 (382)
T ss_pred             EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEEC-----------
Confidence              00               001122345678888888887446999999999999987766543 3332           


Q ss_pred             CCCCceEEEcCeEEEcCCCCC
Q 020815          222 SCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       222 ~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         ++.+++||.||.|+|..+
T Consensus       145 ---~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       145 ---NGQQLRAKLLIAADGANS  162 (382)
T ss_pred             ---CCCEEEeeEEEEecCCCh
Confidence               125799999999999554

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.38  E-value=1.6e-11  Score=115.20  Aligned_cols=132  Identities=21%  Similarity=0.398  Sum_probs=85.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc--ccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA--WLGGQLFSAMVVRKPAHIFLDELGID-------------  156 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~--~~~g~~~~~~~~~~~~~~~l~~~g~~-------------  156 (321)
                      ||+|||||++|+++|+.|++. |++|+|+||.+.++-..  +.+..    ........+.|+++|+.             
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   75 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAEAAATPGFDNRV----SALSAASIRLLEKLGVWDKIEPDRAQPIRD   75 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCccccCCCCCCcce----eecCHHHHHHHHHCCchhhhhhhcCCCceE
Confidence            799999999999999999999 99999999997653110  00000    01111222233333321             


Q ss_pred             -------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815          157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~  219 (321)
                                   +...    ..+....+...+.+.|++.+.+..+++++.+++|+++..+++.+. +...         
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~---------  145 (385)
T TIGR01988        76 IHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLD---------  145 (385)
T ss_pred             EEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEEC---------
Confidence                         0000    011223445678888888887544499999999999987776543 3332         


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCCC
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                           ++.++++|.||.|+|..+.
T Consensus       146 -----~g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       146 -----DGQQLRARLLVGADGANSK  164 (385)
T ss_pred             -----CCCEEEeeEEEEeCCCCCH
Confidence                 1257999999999996653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PTZ00058 glutathione reductase; Provisional

Probab=99.38  E-value=4.5e-12  Score=124.06  Aligned_cols=101  Identities=21%  Similarity=0.323  Sum_probs=69.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH----HHHHHHcCCCcccCCCeEE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQDNYVV  165 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~  165 (321)
                      +|||+|||||++|+.||+.|++. |++|+|||+. .+||+|.+.||++.+.+.....    .+....+|+......++..
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~  125 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL  125 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence            69999999999999999999999 9999999996 7999999999999988766422    2233456664221111111


Q ss_pred             -EecHHHHHHH---HHHHHHcCCCcEEEcCc
Q 020815          166 -IKHAALFTST---IMSKLLARPNVKLFNAV  192 (321)
Q Consensus       166 -~~~~~~~~~~---l~~~~~~~~gv~i~~~~  192 (321)
                       ..+...+...   .++...++.|++++.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~  156 (561)
T PTZ00058        126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGK  156 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE
Confidence             1112222222   22333346799999885

>PRK14694 putative mercuric reductase; Provisional

Probab=99.37  E-value=3.8e-12  Score=122.83  Aligned_cols=137  Identities=14%  Similarity=0.181  Sum_probs=84.9

Q ss_pred             CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHHHHH----cCCCccc-CC
Q 020815           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDE----LGIDYDE-QD  161 (321)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~l~~----~g~~~~~-~~  161 (321)
                      ..+|||+|||||++|+++|+.|++. |++|+|||+. .+||+|++.||++.+.+.+... .+..++    .|+.... ..
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~   81 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV   81 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence            3579999999999999999999999 9999999996 6899999999998887765432 222332    2332111 10


Q ss_pred             CeEE-EecHHHHHHHH----HHH-HHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEE
Q 020815          162 NYVV-IKHAALFTSTI----MSK-LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVV  235 (321)
Q Consensus       162 ~~~~-~~~~~~~~~~l----~~~-~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI  235 (321)
                      ++.. ..........+    .+. +.+..+++++.+ +++.+  +.+. ..|.+.+            ++..++++|+||
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~i--d~~~-~~V~~~~------------g~~~~~~~d~lV  145 (468)
T PRK14694         82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFV--DERT-LTVTLND------------GGEQTVHFDRAF  145 (468)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEe--cCCE-EEEEecC------------CCeEEEECCEEE
Confidence            1100 01111122221    112 222347888887 45555  3332 2233321            123579999999


Q ss_pred             EcCCCCC
Q 020815          236 SSCGHDG  242 (321)
Q Consensus       236 ~AtG~~~  242 (321)
                      +|||...
T Consensus       146 iATGs~p  152 (468)
T PRK14694        146 IGTGARP  152 (468)
T ss_pred             EeCCCCC
Confidence            9999765

>PLN02507 glutathione reductase

Probab=99.37  E-value=6.4e-12  Score=121.95  Aligned_cols=137  Identities=21%  Similarity=0.238  Sum_probs=87.9

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCcccchhhhccchH----HHHHHHcCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGI  155 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk---------~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~  155 (321)
                      .+|||+|||+|++|+.+|..|++. |++|+|||+         ...+||.|++.||++.+.+.....    .+...++|+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            379999999999999999999999 999999996         246899999999999888766432    234455666


Q ss_pred             CcccCCC--eEE-EecHHHHH---HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE
Q 020815          156 DYDEQDN--YVV-IKHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (321)
Q Consensus       156 ~~~~~~~--~~~-~~~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (321)
                      .......  +.. ..+.....   ...++.+.+..+++++.+ ++..+  +.+.+ -|...            +|+..++
T Consensus       103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~v--d~~~v-~V~~~------------~g~~~~~  166 (499)
T PLN02507        103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIV--GPNEV-EVTQL------------DGTKLRY  166 (499)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEE-EEEeC------------CCcEEEE
Confidence            5421111  100 00111111   112334444678999887 44433  33322 22221            1223479


Q ss_pred             EcCeEEEcCCCCC
Q 020815          230 EAKVVVSSCGHDG  242 (321)
Q Consensus       230 ~a~~VI~AtG~~~  242 (321)
                      ++|+||+|||...
T Consensus       167 ~~d~LIIATGs~p  179 (499)
T PLN02507        167 TAKHILIATGSRA  179 (499)
T ss_pred             EcCEEEEecCCCC
Confidence            9999999999754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.37  E-value=2e-11  Score=115.23  Aligned_cols=136  Identities=22%  Similarity=0.306  Sum_probs=85.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCC-ccccCcccch------------hhhccc--hHHHHHHHc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG-GAWLGGQLFS------------AMVVRK--PAHIFLDEL  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg-~~~~~g~~~~------------~~~~~~--~~~~~l~~~  153 (321)
                      .+||+|||||++|+++|++|++. +|.+|+||||...+++ .++.+.....            .+....  ...++.+++
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   81 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH   81 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence            48999999999999999999984 5899999999864432 2222111100            000000  011223334


Q ss_pred             CCCcccCCCeEE---------------------------------------------------EecHHHHHHHHHHHHHc
Q 020815          154 GIDYDEQDNYVV---------------------------------------------------IKHAALFTSTIMSKLLA  182 (321)
Q Consensus       154 g~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~l~~~~~~  182 (321)
                      +++|...+.+.+                                                   ..+...+.+.|.+.+. 
T Consensus        82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~-  160 (393)
T PRK11728         82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ-  160 (393)
T ss_pred             CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH-
Confidence            443332111111                                                   1234566677777776 


Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +.|++++++++|.++..+++.+ .|.+..               .+++||.||+|+|.++
T Consensus       161 ~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~---------------g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        161 ARGGEIRLGAEVTALDEHANGV-VVRTTQ---------------GEYEARTLINCAGLMS  204 (393)
T ss_pred             hCCCEEEcCCEEEEEEecCCeE-EEEECC---------------CEEEeCEEEECCCcch
Confidence            5799999999999998776654 344421               3799999999999664

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.36  E-value=2e-11  Score=115.09  Aligned_cols=141  Identities=18%  Similarity=0.292  Sum_probs=83.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCcccchhhhcc----chHH-HHHHHc------CC---
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVR----KPAH-IFLDEL------GI---  155 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~~~gg~~~~~g~~~~~~~~~----~~~~-~~l~~~------g~---  155 (321)
                      |||+||||||+|+++|+.|++. |++|+|||+. ..+.   ..++.+....+..    .... ..+...      +.   
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~~~~~~---~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~   76 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA-GIETILLERALSNIK---PCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIK   76 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCcC---cCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceee
Confidence            7999999999999999999999 9999999997 2221   0111111111000    0000 001110      00   


Q ss_pred             -CcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815          156 -DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (321)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V  234 (321)
                       .+.....+....+...|.+.|.+++. +.|++++.. .++++..+++.+. +....+      ..+..++..+++||+|
T Consensus        77 ~~~~~~~~~~~~~~r~~fd~~L~~~a~-~~G~~v~~~-~v~~v~~~~~~~~-v~~~~~------~~~~~~~~~~i~a~~V  147 (388)
T TIGR02023        77 VTIPSEDGYVGMVRREVFDSYLRERAQ-KAGAELIHG-LFLKLERDRDGVT-LTYRTP------KKGAGGEKGSVEADVV  147 (388)
T ss_pred             eccCCCCCceEeeeHHHHHHHHHHHHH-hCCCEEEee-EEEEEEEcCCeEE-EEEEec------cccCCCcceEEEeCEE
Confidence             00101123334566788888888886 579999866 6888877766543 333210      0000113368999999


Q ss_pred             EEcCCCCCCC
Q 020815          235 VSSCGHDGPF  244 (321)
Q Consensus       235 I~AtG~~~~~  244 (321)
                      |.|+|..+.+
T Consensus       148 I~AdG~~S~v  157 (388)
T TIGR02023       148 IGADGANSPV  157 (388)
T ss_pred             EECCCCCcHH
Confidence            9999966543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.36  E-value=1.9e-11  Score=117.72  Aligned_cols=42  Identities=26%  Similarity=0.568  Sum_probs=35.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~  130 (321)
                      .++||+|||||++|+++|++|++. +|.+|+|||++....|.+
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaS   65 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGAS   65 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccc
Confidence            368999999999999999999985 589999999976433333

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.36  E-value=4.7e-12  Score=121.53  Aligned_cols=130  Identities=18%  Similarity=0.235  Sum_probs=84.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-H---HHHHHcCCCcccCC--Ce
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-H---IFLDELGIDYDEQD--NY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~---~~l~~~g~~~~~~~--~~  163 (321)
                      +|||+|||||++|+.||+.|++. |++|+|||+. .+||.|.+.||++.+.+..... .   +....+|++.....  ++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW   79 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence            59999999999999999999999 9999999996 6899999999999887655421 1   22344555432111  11


Q ss_pred             EEE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          164 VVI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       164 ~~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ... .....+.+.+   ++...++.|++++.++.+.   .+++.+   .+.               ..++++|+||+|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v---~v~---------------~~~~~~d~vIiAtG  138 (450)
T TIGR01421        80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTV---EVN---------------GRDYTAPHILIATG  138 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEE---EEC---------------CEEEEeCEEEEecC
Confidence            100 1111222221   2223335799999885431   233332   221               25689999999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      ...
T Consensus       139 s~p  141 (450)
T TIGR01421       139 GKP  141 (450)
T ss_pred             CCC
Confidence            764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.35  E-value=3.5e-12  Score=122.35  Aligned_cols=131  Identities=22%  Similarity=0.281  Sum_probs=85.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-H---HHHHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-H---IFLDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~---~~l~~~g~~~~~~-~~~~  164 (321)
                      +|||+||||||+|++||+.|++. |++|+|+|+. .+||.|.+.||++.+.+..... .   +....+|+..... -++.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK   79 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence            59999999999999999999999 9999999995 7999999999999987765422 2   2233455543211 0110


Q ss_pred             EE-ec----HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          165 VI-KH----AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       165 ~~-~~----~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      .. .+    ...+...+.+.+ ++.|++++.+ ++..+  +.+.+. +..               +..++++|+||+|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l-~~~gV~~~~g-~~~~v--~~~~v~-v~~---------------~g~~~~~d~lIiATG  139 (446)
T TIGR01424        80 KLLQKKDDEIARLSGLYKRLL-ANAGVELLEG-RARLV--GPNTVE-VLQ---------------DGTTYTAKKILIAVG  139 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEE-EEEEe--cCCEEE-Eec---------------CCeEEEcCEEEEecC
Confidence            00 00    112223333333 4679999877 55444  223221 111               125799999999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      ...
T Consensus       140 s~p  142 (446)
T TIGR01424       140 GRP  142 (446)
T ss_pred             CcC
Confidence            764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.35  E-value=5.7e-12  Score=121.43  Aligned_cols=134  Identities=21%  Similarity=0.315  Sum_probs=83.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHH---HHHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~~~~~~-~~~~  164 (321)
                      +|||+|||||++|++||+.|++. |++|+|||+.. .||.|++.||++.+.+.... ..+   ....+|+..... ..+.
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK   81 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence            69999999999999999999999 99999999986 89999999999887665432 222   234455543211 0110


Q ss_pred             -EEecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          165 -VIKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       165 -~~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                       +......+.+.+   ++...++.|++++.++ ++.+  +...+. |....             ...++++|+||+|||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~~~-v~~~~-------------~~~~~~~d~lViAtGs  144 (462)
T PRK06416         82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV--DPNTVR-VMTED-------------GEQTYTAKNIILATGS  144 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cCCEEE-EecCC-------------CcEEEEeCEEEEeCCC
Confidence             001111111111   2233346799998873 3322  333222 21110             1257999999999997


Q ss_pred             CC
Q 020815          241 DG  242 (321)
Q Consensus       241 ~~  242 (321)
                      ..
T Consensus       145 ~p  146 (462)
T PRK06416        145 RP  146 (462)
T ss_pred             CC
Confidence            64

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.34  E-value=4.6e-12  Score=122.43  Aligned_cols=138  Identities=15%  Similarity=0.252  Sum_probs=86.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHH---HHHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~~~~~~-~~~~  164 (321)
                      .|||+|||||++|+.+|+.|++. |++|+|||+. .+||.|.+.||++.+.+.... ..+   ....+|+..... .++.
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA   81 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            69999999999999999999999 9999999996 789999999999988776532 122   233455542211 0111


Q ss_pred             EE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEE----CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815          165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (321)
Q Consensus       165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~----~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~  236 (321)
                      .. .....+...+   ...+.++.|++++.+ .++.+..+    +++...|...            +++..++++|+||+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~------------~g~~~~~~~d~lVi  148 (472)
T PRK05976         82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETE------------TGENEMIIPENLLI  148 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeC------------CCceEEEEcCEEEE
Confidence            00 0111222222   223344679999988 44444222    0112222221            11235799999999


Q ss_pred             cCCCCC
Q 020815          237 SCGHDG  242 (321)
Q Consensus       237 AtG~~~  242 (321)
                      |||...
T Consensus       149 ATGs~p  154 (472)
T PRK05976        149 ATGSRP  154 (472)
T ss_pred             eCCCCC
Confidence            999765

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.34  E-value=2.2e-11  Score=113.76  Aligned_cols=39  Identities=33%  Similarity=0.668  Sum_probs=34.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      |||+|||||++|+++|++|++. |.+|+|||+.....|.+
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~~~gaS   39 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSRAQGAS   39 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcc
Confidence            5999999999999999999999 99999999986543433

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.34  E-value=2.5e-11  Score=114.58  Aligned_cols=132  Identities=23%  Similarity=0.357  Sum_probs=86.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------c---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y---  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~---  157 (321)
                      ..||+|||||++|+++|+.|++. |++|+|+||.+.++...  .+     ........+.|+++|+.         .   
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~~~~g--~g-----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~~   75 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEIGEIG--AG-----IQLGPNAFSALDALGVGEAARQRAVFTDHL   75 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCccccccc--ce-----eeeCchHHHHHHHcCChHHHHhhccCCcce
Confidence            47999999999999999999999 99999999987554210  00     11112223333333321         0   


Q ss_pred             ---cc-C-----------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec
Q 020815          158 ---DE-Q-----------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM  216 (321)
Q Consensus       158 ---~~-~-----------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~  216 (321)
                         +. .                 .......+...+.+.|++.+.+..+++++++++++++..+++.+. +...      
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------  148 (396)
T PRK08163         76 TMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQ------  148 (396)
T ss_pred             EEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEc------
Confidence               00 0                 000123455677788888887555799999999999987666443 3332      


Q ss_pred             ccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          217 NHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       217 ~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                              ++.++.||.||.|+|..+..
T Consensus       149 --------~g~~~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        149 --------QGNRWTGDALIGCDGVKSVV  168 (396)
T ss_pred             --------CCCEEecCEEEECCCcChHH
Confidence                    22579999999999966543

>PRK07236 hypothetical protein; Provisional

Probab=99.34  E-value=2.8e-11  Score=113.91  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=82.7

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccC--------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ--------  160 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~--------  160 (321)
                      ...||+|||||++|+++|+.|++. |++|+|+||.+.....  .+..    ........+.|+++|+.-...        
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~g~g----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~   77 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPTELDG--RGAG----IVLQPELLRALAEAGVALPADIGVPSRER   77 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcCC--CCce----eEeCHHHHHHHHHcCCCcccccccCccce
Confidence            357999999999999999999999 9999999998632110  0111    112334556677766631100        


Q ss_pred             ------CCeE-------EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCce
Q 020815          161 ------DNYV-------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN  227 (321)
Q Consensus       161 ------~~~~-------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~  227 (321)
                            +...       .......+.+.|++.+   .+++++++++|+++..+++.+. +...              ++.
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~  139 (386)
T PRK07236         78 IYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDRVT-ARFA--------------DGR  139 (386)
T ss_pred             EEEeCCCCEeeccCCCccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCeEE-EEEC--------------CCC
Confidence                  0000       0012233444444332   4678999999999988776544 3332              226


Q ss_pred             EEEcCeEEEcCCCCCC
Q 020815          228 VMEAKVVVSSCGHDGP  243 (321)
Q Consensus       228 ~i~a~~VI~AtG~~~~  243 (321)
                      +++||+||.|+|..+.
T Consensus       140 ~~~ad~vIgADG~~S~  155 (386)
T PRK07236        140 RETADLLVGADGGRST  155 (386)
T ss_pred             EEEeCEEEECCCCCch
Confidence            7999999999996554

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.33  E-value=1.9e-11  Score=117.84  Aligned_cols=53  Identities=34%  Similarity=0.494  Sum_probs=48.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~  143 (321)
                      +|||+|||||++|+.+|+.|++. |++|+|||+...+||.|++.++++.+.+..
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~GG~~~~~gcipsk~l~~   57 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNVGGGCTHTGTIPSKALRE   57 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccccccccccCCCCHHHHHH
Confidence            69999999999999999999999 999999999888999999999888765543

>PLN02697 lycopene epsilon cyclase

Probab=99.33  E-value=1.5e-11  Score=119.38  Aligned_cols=135  Identities=16%  Similarity=0.254  Sum_probs=82.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc--cccCcccchhhhccchHHHHHHHcCCCcccC-----C
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG--AWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-----D  161 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~--~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~-----~  161 (321)
                      ..|||+|||||++|+++|++|++. |++|+|||+......+  .|.  ..+...-........+...-+.+...     +
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~p~~~n~GvW~--~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~  183 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTNNYGVWE--DEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG  183 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcccCCCccccch--hHHHhcCcHHHHHhhcCCcEEEecCCceeecc
Confidence            358999999999999999999999 9999999986433222  111  00000000000000011100101100     1


Q ss_pred             CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+...+...+.+.|++++. +.|+++ .+++|+++..+++.+..+.+.              ++.+++|+.||+|+|..
T Consensus       184 ~~Yg~V~R~~L~~~Ll~~a~-~~GV~~-~~~~V~~I~~~~~~~~vv~~~--------------dG~~i~A~lVI~AdG~~  247 (529)
T PLN02697        184 RAYGRVSRTLLHEELLRRCV-ESGVSY-LSSKVDRITEASDGLRLVACE--------------DGRVIPCRLATVASGAA  247 (529)
T ss_pred             CcccEEcHHHHHHHHHHHHH-hcCCEE-EeeEEEEEEEcCCcEEEEEEc--------------CCcEEECCEEEECCCcC
Confidence            11123456778888888886 579998 556999988766655434332              12679999999999977


Q ss_pred             C
Q 020815          242 G  242 (321)
Q Consensus       242 ~  242 (321)
                      +
T Consensus       248 S  248 (529)
T PLN02697        248 S  248 (529)
T ss_pred             h
Confidence            6

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.32  E-value=5.5e-11  Score=112.52  Aligned_cols=132  Identities=19%  Similarity=0.288  Sum_probs=84.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc---
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---  158 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~---  158 (321)
                      -+|+|||||++|+++|+.|++. |++|+|+|+.+......  .+     ........+.|+++|+         ...   
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~   74 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQELSEVG--AG-----LQLAPNAMRHLERLGVADRLSGTGVTPKALY   74 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcCC--cc-----ceeChhHHHHHHHCCChHHHhhcccCcceEE
Confidence            3799999999999999999999 99999999986542110  00     1111122223333322         000   


Q ss_pred             --c----------------C---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815          159 --E----------------Q---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (321)
Q Consensus       159 --~----------------~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~  217 (321)
                        .                .   ...+...+...+.+.|++.+.+..+++++++++++++..+++.+.......      
T Consensus        75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~------  148 (400)
T PRK06475         75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRT------  148 (400)
T ss_pred             EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeC------
Confidence              0                0   001123456778888888887567899999999999987666543222110      


Q ss_pred             cCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          218 HDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       218 ~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       +     ...+++||.||.|+|.+|
T Consensus       149 -~-----~~~~~~adlvIgADG~~S  167 (400)
T PRK06475        149 -N-----SVETVSAAYLIACDGVWS  167 (400)
T ss_pred             -C-----CCcEEecCEEEECCCccH
Confidence             0     225789999999999554

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.32  E-value=4.5e-11  Score=112.98  Aligned_cols=144  Identities=19%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc----chHH-HHHHHc------CC--Cc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR----KPAH-IFLDEL------GI--DY  157 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~----~~~~-~~l~~~------g~--~~  157 (321)
                      +||+||||||+|++||+.|++. |++|+||||....+..|  ++.+....+..    .... ..+...      +.  .+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~   77 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPDNAKPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDI   77 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCCCCCCc--cccccHhhHhhccCchhHHHhhhceeEEecCCceEEEe
Confidence            5899999999999999999999 99999999976544322  22222111111    0000 011110      00  01


Q ss_pred             cc---CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815          158 DE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (321)
Q Consensus       158 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~  232 (321)
                      ..   ...+....+...|.+.|.+++. +.|++++.++ ++++...  .+...+|....     ...+...++..+++||
T Consensus        78 ~~~~~~~~~~~~v~R~~~d~~L~~~a~-~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~-----~~~~~~~g~~~~i~a~  150 (398)
T TIGR02028        78 GRTLKEHEYIGMLRREVLDSFLRRRAA-DAGATLINGL-VTKLSLPADADDPYTLHYIS-----SDSGGPSGTRCTLEVD  150 (398)
T ss_pred             ccCCCCCCceeeeeHHHHHHHHHHHHH-HCCcEEEcce-EEEEEeccCCCceEEEEEee-----ccccccCCCccEEEeC
Confidence            10   0122223456777788888876 6799998884 7776542  23334444321     0000001234689999


Q ss_pred             eEEEcCCCCCCC
Q 020815          233 VVVSSCGHDGPF  244 (321)
Q Consensus       233 ~VI~AtG~~~~~  244 (321)
                      +||.|+|..+.+
T Consensus       151 ~VIgADG~~S~v  162 (398)
T TIGR02028       151 AVIGADGANSRV  162 (398)
T ss_pred             EEEECCCcchHH
Confidence            999999966543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.32  E-value=1.4e-11  Score=117.64  Aligned_cols=137  Identities=20%  Similarity=0.242  Sum_probs=78.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHH-cCCCcccCCCeEEEe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDE-LGIDYDEQDNYVVIK  167 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~  167 (321)
                      .+||+|||||++|+++|++|.+. |.. ++|+||+..+||..|..  .+..+..+.+  .++.. -+.+|.....+.-..
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~Gg~W~~~--ry~~l~~~~p--~~~~~~~~~p~~~~~~~~~~~   82 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVGGTWRYN--RYPGLRLDSP--KWLLGFPFLPFRWDEAFAPFA   82 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcCCcchhc--cCCceEECCc--hheeccCCCccCCcccCCCcc
Confidence            68999999999999999999999 888 99999999898875532  1111111111  11111 122232112222222


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCc
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~  245 (321)
                      ...++....+++....  .++.+++.|+.+..++ +...-|.+..+            ...++.||.||+|||.++.+.
T Consensus        83 ~~~~y~~~~~~~y~~~--~~i~~~~~v~~~~~~~~~~~w~V~~~~~------------~~~~~~a~~vV~ATG~~~~P~  147 (443)
T COG2072          83 EIKDYIKDYLEKYGLR--FQIRFNTRVEVADWDEDTKRWTVTTSDG------------GTGELTADFVVVATGHLSEPY  147 (443)
T ss_pred             cHHHHHHHHHHHcCce--eEEEcccceEEEEecCCCCeEEEEEcCC------------CeeeEecCEEEEeecCCCCCC
Confidence            2344444444444322  3455555555555554 33445555321            112288999999999766533

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.32  E-value=5.3e-11  Score=111.61  Aligned_cols=134  Identities=21%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccch---------hhhc-----------------
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFS---------AMVV-----------------  142 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~---------~~~~-----------------  142 (321)
                      |||+|||||++|+++|++|+++ |.+|+|||+....+  ++.+.......         .+..                 
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~   79 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKL   79 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCee
Confidence            6999999999999999999999 99999999975432  22211111000         0000                 


Q ss_pred             -----------c-----chHHHHHHHcCCCccc---------------CCCe-EE------EecHHHHHHHHHHHHHcCC
Q 020815          143 -----------R-----KPAHIFLDELGIDYDE---------------QDNY-VV------IKHAALFTSTIMSKLLARP  184 (321)
Q Consensus       143 -----------~-----~~~~~~l~~~g~~~~~---------------~~~~-~~------~~~~~~~~~~l~~~~~~~~  184 (321)
                                 .     ....+.+++.|++...               ...+ .+      ..+...+...|.+.+. ..
T Consensus        80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~-~~  158 (380)
T TIGR01377        80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAE-AH  158 (380)
T ss_pred             EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHH-Hc
Confidence                       0     0011222333432110               0000 00      2244567777777665 57


Q ss_pred             CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       185 gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      |++++.+++|+++..+++.+. |.+.               ..++.|+.||+|+|++.
T Consensus       159 g~~~~~~~~V~~i~~~~~~~~-v~~~---------------~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       159 GATVRDGTKVVEIEPTELLVT-VKTT---------------KGSYQANKLVVTAGAWT  200 (380)
T ss_pred             CCEEECCCeEEEEEecCCeEE-EEeC---------------CCEEEeCEEEEecCcch
Confidence            999999999999987766543 4442               14789999999999764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07588 hypothetical protein; Provisional

Probab=99.31  E-value=5.7e-11  Score=112.02  Aligned_cols=127  Identities=16%  Similarity=0.140  Sum_probs=81.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccchhhhccchHHHHHHHcCC---------Cccc-
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE-  159 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~~-  159 (321)
                      ||+|||||++|+++|+.|++. |++|+|+||.+...  |..+.         ......+.|+++|+         ++.. 
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~~~~---------l~~~~~~~l~~lGl~~~l~~~~~~~~~~   71 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPELRTGGYMVD---------FWGVGYEVAKRMGITDQLREAGYQIEHV   71 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCccCCCeEEe---------ccCcHHHHHHHcCCHHHHHhccCCccce
Confidence            899999999999999999999 99999999986542  11110         00111122222222         1110 


Q ss_pred             -----C----------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          160 -----Q----------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       160 -----~----------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                           .                +......+...+.+.|++.+  ..+++++++++|+++..+++.+. +.+.        
T Consensus        72 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------  140 (391)
T PRK07588         72 RSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI--DGQVETIFDDSIATIDEHRDGVR-VTFE--------  140 (391)
T ss_pred             EEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh--hcCeEEEeCCEEeEEEECCCeEE-EEEC--------
Confidence                 0                00112334566667776655  34799999999999988777544 3332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCCCc
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~~~  245 (321)
                            ++.++++|.||.|+|..+...
T Consensus       141 ------~g~~~~~d~vIgADG~~S~vR  161 (391)
T PRK07588        141 ------RGTPRDFDLVIGADGLHSHVR  161 (391)
T ss_pred             ------CCCEEEeCEEEECCCCCccch
Confidence                  225689999999999766543

>PRK11445 putative oxidoreductase; Provisional

Probab=99.31  E-value=8.1e-11  Score=109.45  Aligned_cols=133  Identities=16%  Similarity=0.180  Sum_probs=84.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccchhhhccchHHHHHHHcCCCcccC--------
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ--------  160 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~--------  160 (321)
                      |||+|||||++|+++|+.|++.  ++|+|||+.+..+  +....+|.     .......+.|+++|+.....        
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~~~~~~~~~~~g~-----~l~~~~~~~L~~lgl~~~~~~~~~~~~~   74 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQCGTEGFSKPCGG-----LLAPDAQKSFAKDGLTLPKDVIANPQIF   74 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCccccccccCcCcC-----ccCHHHHHHHHHcCCCCCcceeeccccc
Confidence            7999999999999999999986  8999999986542  11111111     12233445566555531100        


Q ss_pred             ---------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          161 ---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       161 ---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                                     ...+...+...+.+.|.+..  ..+++++.++.++++..+++.+. +....           +++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~--~~gv~v~~~~~v~~i~~~~~~~~-v~~~~-----------~g~  140 (351)
T PRK11445         75 AVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI--PASVEVYHNSLCRKIWREDDGYH-VIFRA-----------DGW  140 (351)
T ss_pred             eeeEecccccchhhcCCCcccccHHHHHHHHHHHH--hcCCEEEcCCEEEEEEEcCCEEE-EEEec-----------CCc
Confidence                           00112234556666666543  46899999999999987766433 33211           112


Q ss_pred             ceEEEcCeEEEcCCCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~  244 (321)
                      ..+++|++||+|+|..+..
T Consensus       141 ~~~i~a~~vV~AdG~~S~v  159 (351)
T PRK11445        141 EQHITARYLVGADGANSMV  159 (351)
T ss_pred             EEEEEeCEEEECCCCCcHH
Confidence            3479999999999977644

>PRK06370 mercuric reductase; Validated

Probab=99.31  E-value=1.8e-11  Score=117.96  Aligned_cols=129  Identities=19%  Similarity=0.211  Sum_probs=83.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH----HHHHHHcCCCccc--CCCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDE--QDNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~~~~--~~~~  163 (321)
                      +|||+|||+|++|+++|+.|++. |++|+|||+. ..||+|.+.||++.+.+.....    .+....+|++...  ..++
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGL-GMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF   82 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence            69999999999999999999999 9999999996 6899999999999887765432    1223446664321  1111


Q ss_pred             EEEe-cHHH----HHHHHHHHHHcCC-CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          164 VVIK-HAAL----FTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       164 ~~~~-~~~~----~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      .... ....    +...+.+.+. +. |++++.++.+   ..++.++   .+.               ..++++|+||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~v~~g~~~---~~~~~~v---~v~---------------~~~~~~d~lViA  140 (463)
T PRK06370         83 KAVMARKRRIRARSRHGSEQWLR-GLEGVDVFRGHAR---FESPNTV---RVG---------------GETLRAKRIFIN  140 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHh-cCCCcEEEEEEEE---EccCCEE---EEC---------------cEEEEeCEEEEc
Confidence            1100 1111    1122233333 44 8999888643   2233332   221               156899999999


Q ss_pred             CCCCC
Q 020815          238 CGHDG  242 (321)
Q Consensus       238 tG~~~  242 (321)
                      ||...
T Consensus       141 TGs~p  145 (463)
T PRK06370        141 TGARA  145 (463)
T ss_pred             CCCCC
Confidence            99754

>PRK07538 hypothetical protein; Provisional

Probab=99.31  E-value=9.2e-11  Score=111.47  Aligned_cols=134  Identities=16%  Similarity=0.145  Sum_probs=82.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc----
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD----  158 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~----  158 (321)
                      ||+|||||++|+++|+.|++. |++|+|+|+.+.+.-.  ..+.     .......+.|+++|+         +..    
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--g~gi-----~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~   73 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPELRPL--GVGI-----NLLPHAVRELAELGLLDALDAIGIRTRELAY   73 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCccccc--Ccce-----eeCchHHHHHHHCCCHHHHHhhCCCCcceEE
Confidence            899999999999999999999 9999999998654311  0000     001111222222221         100    


Q ss_pred             --cCC--------------Ce-EEEecHHHHHHHHHHHHHcCCC-cEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815          159 --EQD--------------NY-VVIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       159 --~~~--------------~~-~~~~~~~~~~~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~  220 (321)
                        ..+              .+ .+..+...+.+.|++.+.+..| .+++++++++++..+++.+. +.+.+      .  
T Consensus        74 ~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~------~--  144 (413)
T PRK07538         74 FNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGD------R--  144 (413)
T ss_pred             EcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEec------c--
Confidence              000              01 1224567788888888765445 57999999999987655422 22211      0  


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCC
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                       .+++..+++||.||.|+|..+.
T Consensus       145 -~~g~~~~~~adlvIgADG~~S~  166 (413)
T PRK07538        145 -AGGDLVSVRGDVLIGADGIHSA  166 (413)
T ss_pred             -CCCccceEEeeEEEECCCCCHH
Confidence             1124468999999999995553

>PRK06847 hypothetical protein; Provisional

Probab=99.31  E-value=5.6e-11  Score=111.29  Aligned_cols=131  Identities=18%  Similarity=0.180  Sum_probs=83.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~--  158 (321)
                      ..||+|||||++|+++|+.|++. |++|+|+|+...+....  .+.     .......+.|+++|+         +..  
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g~-----~l~~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEWRVYG--AGI-----TLQGNALRALRELGVLDECLEAGFGFDGV   75 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCccCC--cee-----eecHHHHHHHHHcCCHHHHHHhCCCccce
Confidence            46999999999999999999999 99999999986532110  000     001111122222221         111  


Q ss_pred             ----cCCC--------------e--EEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          159 ----EQDN--------------Y--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       159 ----~~~~--------------~--~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                          ..+.              +  ....+...+.+.|.+.+. +.|++++++++++++..+++.+. +.+.        
T Consensus        76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~--------  145 (375)
T PRK06847         76 DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAAR-AAGADVRLGTTVTAIEQDDDGVT-VTFS--------  145 (375)
T ss_pred             EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHH-HhCCEEEeCCEEEEEEEcCCEEE-EEEc--------
Confidence                0000              0  012234566777777775 57999999999999987666532 3332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                            ++.++++|.||+|+|.++..
T Consensus       146 ------~g~~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        146 ------DGTTGRYDLVVGADGLYSKV  165 (375)
T ss_pred             ------CCCEEEcCEEEECcCCCcch
Confidence                  12579999999999977644

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.30  E-value=1.1e-10  Score=109.95  Aligned_cols=137  Identities=20%  Similarity=0.256  Sum_probs=81.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~  158 (321)
                      .+||+|||||++|+++|+.|++.  .|.+|+|+|+...... ...+ .............+.++++|+         +..
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~-~~~~-~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~   80 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESD-AHPG-FDARAIALAAGTCQQLARLGVWQALADCATPIT   80 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccc-cCCC-CCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence            58999999999999999999874  2899999999532110 0000 000000001111122222222         100


Q ss_pred             c-----C---------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          159 E-----Q---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       159 ~-----~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                      .     .               .......+...+.+.|++.+.+..|++++++++++++..+++.+. +.+.+       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~-------  152 (395)
T PRK05732         81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDD-------  152 (395)
T ss_pred             EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECC-------
Confidence            0     0               001122334566677788777667899999999999987666543 44321       


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                             +.++++|+||.|+|..+.
T Consensus       153 -------g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        153 -------GETLTGRLLVAADGSHSA  170 (395)
T ss_pred             -------CCEEEeCEEEEecCCChh
Confidence                   257899999999996653

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.30  E-value=1.5e-10  Score=110.89  Aligned_cols=144  Identities=18%  Similarity=0.244  Sum_probs=82.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh----ccchHH-HHHHHc------C--CC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV----VRKPAH-IFLDEL------G--ID  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~----~~~~~~-~~l~~~------g--~~  156 (321)
                      +|||+||||||+|+++|+.|++. |++|+|||+.....-.  .++.+....+    ...... +.+...      +  +.
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~~~k~--cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~  115 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLDNAKP--CGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD  115 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCC--ccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence            58999999999999999999999 9999999997432111  1222211111    000110 111111      1  11


Q ss_pred             ccc---CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          157 YDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       157 ~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      +..   ...+....+...|.+.|.+++. +.|++++.+ .++++..++  +....|.+...     ..+...++..+++|
T Consensus       116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~-~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~-----~~~~~~g~~~~v~a  188 (450)
T PLN00093        116 IGKTLKPHEYIGMVRREVLDSFLRERAQ-SNGATLING-LFTRIDVPKDPNGPYVIHYTSY-----DSGSGAGTPKTLEV  188 (450)
T ss_pred             ecccCCCCCeEEEecHHHHHHHHHHHHH-HCCCEEEec-eEEEEEeccCCCCcEEEEEEec-----cccccCCCccEEEe
Confidence            111   0123334567788888888887 579999876 577776432  22223333210     00000123468999


Q ss_pred             CeEEEcCCCCCC
Q 020815          232 KVVVSSCGHDGP  243 (321)
Q Consensus       232 ~~VI~AtG~~~~  243 (321)
                      |.||.|+|..+.
T Consensus       189 ~~VIgADG~~S~  200 (450)
T PLN00093        189 DAVIGADGANSR  200 (450)
T ss_pred             CEEEEcCCcchH
Confidence            999999995543

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.30  E-value=1e-10  Score=113.88  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..|||||||||+.|+++|+.|+++ |++|+||||++..+|++
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLASATS   45 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence            369999999999999999999999 99999999987655544

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.30  E-value=3.4e-11  Score=116.39  Aligned_cols=141  Identities=19%  Similarity=0.240  Sum_probs=85.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc--------CCCCCccccCcccchhhhccchH-HHHH---HHcCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS--------VSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGIDY  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~--------~~~gg~~~~~g~~~~~~~~~~~~-~~~l---~~~g~~~  157 (321)
                      +|||+|||+|++|..+|+.+++..|++|+|||+.        ..+||+|.+.||++.+.+..... .+.+   ..+|+..
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~   82 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF   82 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence            6999999999999999999999328999999984        46899999999999998876532 2333   3455543


Q ss_pred             ccCC---CeEE-EecHHHHHHHH---HHHHHcC-CCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE
Q 020815          158 DEQD---NYVV-IKHAALFTSTI---MSKLLAR-PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (321)
Q Consensus       158 ~~~~---~~~~-~~~~~~~~~~l---~~~~~~~-~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (321)
                      +...   ++.. ..+.......+   +....++ .|++++.+.   ....+++.+ .|....        ++......++
T Consensus        83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~---a~f~~~~~v-~V~~~~--------~~~~~~~~~~  150 (486)
T TIGR01423        83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW---GALEDKNVV-LVRESA--------DPKSAVKERL  150 (486)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE---EEEccCCEE-EEeecc--------CCCCCcceEE
Confidence            2110   1111 11112222222   1222334 589999874   222334332 222100        0000113579


Q ss_pred             EcCeEEEcCCCCC
Q 020815          230 EAKVVVSSCGHDG  242 (321)
Q Consensus       230 ~a~~VI~AtG~~~  242 (321)
                      ++|+||+|||...
T Consensus       151 ~~d~lIIATGs~p  163 (486)
T TIGR01423       151 QAEHILLATGSWP  163 (486)
T ss_pred             ECCEEEEecCCCC
Confidence            9999999999765

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06116 glutathione reductase; Validated

Probab=99.30  E-value=1e-11  Score=119.25  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHH----HHHcCCCcccC-CCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF----LDELGIDYDEQ-DNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~----l~~~g~~~~~~-~~~  163 (321)
                      +|||+|||||++|++||+.|++. |++|+|||+. ..||.|.+.||++.+.+..... .+.    ...+|+..... .++
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW   81 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence            69999999999999999999999 9999999996 7899999999999887665421 122    23455543211 011


Q ss_pred             EEEe-cH----HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          164 VVIK-HA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       164 ~~~~-~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      .... ..    ..+...+ ++..++.|++++.+ +++.+  +..+   |.+ +              ..++++|+||+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~l~~~gv~~~~g-~~~~v--~~~~---v~~-~--------------g~~~~~d~lViAT  139 (450)
T PRK06116         82 AKLIANRDAYIDRLHGSY-RNGLENNGVDLIEG-FARFV--DAHT---VEV-N--------------GERYTADHILIAT  139 (450)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhCCCEEEEE-EEEEc--cCCE---EEE-C--------------CEEEEeCEEEEec
Confidence            0000 00    1112222 23334679999887 34433  3332   222 1              1579999999999


Q ss_pred             CCCC
Q 020815          239 GHDG  242 (321)
Q Consensus       239 G~~~  242 (321)
                      |...
T Consensus       140 Gs~p  143 (450)
T PRK06116        140 GGRP  143 (450)
T ss_pred             CCCC
Confidence            9765

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.29  E-value=1.2e-10  Score=116.13  Aligned_cols=148  Identities=20%  Similarity=0.213  Sum_probs=87.2

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------C---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D---  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~---  156 (321)
                      ++||+||||||+||++|+.|++ . |++|.|||+.+.+.... .+.      .......+.|+++|+         .   
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~~~~~g-rA~------gl~prtleiL~~lGl~d~l~~~g~~~~~  103 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPGRLELG-QAD------GIACRTMEMFQAFGFAERILKEAYWINE  103 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCCCCCCC-eee------EEChHHHHHHHhccchHHHHhhcccccc
Confidence            6899999999999999999999 7 99999999986432100 000      011112222222222         0   


Q ss_pred             ---ccc--------------------CCCe-EEEecHHHHHHHHHHHHHcCC-CcEEEcCceEEEEEEECC--EEEEEEE
Q 020815          157 ---YDE--------------------QDNY-VVIKHAALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGG--RVGGVVT  209 (321)
Q Consensus       157 ---~~~--------------------~~~~-~~~~~~~~~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~--~v~gv~~  209 (321)
                         |..                    ...+ .+..+...+.+.|++.+.+.. ++++.++++++++..++.  .-+.|.+
T Consensus       104 ~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l  183 (634)
T PRK08294        104 TAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTL  183 (634)
T ss_pred             eEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEE
Confidence               000                    0001 134455667778888776332 368899999999987642  1122333


Q ss_pred             eecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          210 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                      .+      .++..+|+..+++||+||.|+|     .+|.+|+..+++
T Consensus       184 ~~------~~~~~~g~~~tv~A~~lVGaDG-----a~S~VR~~lgi~  219 (634)
T PRK08294        184 RR------TDGEHEGEEETVRAKYVVGCDG-----ARSRVRKAIGRE  219 (634)
T ss_pred             EE------CCCCCCCceEEEEeCEEEECCC-----CchHHHHhcCCC
Confidence            21      0000123347899999999999     455566655443

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.29  E-value=1e-10  Score=113.86  Aligned_cols=41  Identities=20%  Similarity=0.365  Sum_probs=36.9

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+|||+|||||+.|+++|+.|+++ |++|+||||++..+|++
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~~~GtS   45 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDLAQGTS   45 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCCc
Confidence            369999999999999999999999 99999999997665554

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.29  E-value=6.9e-11  Score=112.27  Aligned_cols=58  Identities=29%  Similarity=0.413  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ...+...|.+.+. +.|++|+++++|+++..+++++.+|.+.               ..+++||.||+|+|.++
T Consensus       200 p~~~~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~v~t~---------------~~~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAE-QLGVKFRFNTPVDGLLVEGGRITGVQTG---------------GGVITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEEEEEeC---------------CcEEeCCEEEECCCcch
Confidence            4566677777775 6799999999999998888877777653               25789999999999765

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.29  E-value=3.1e-11  Score=115.34  Aligned_cols=141  Identities=21%  Similarity=0.305  Sum_probs=89.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc------cCcccchhh----hc----------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW------LGGQLFSAM----VV----------------  142 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~------~~g~~~~~~----~~----------------  142 (321)
                      .++||+|||||+.|+.+|+.++.+ |++|+|+|+++...|++.      ++|-.+-..    +.                
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH   89 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH   89 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence            579999999999999999999999 999999999988776652      122111000    00                


Q ss_pred             -----------cc-----h----HHHHHHHc-CCC--------------------cccC---CCeEE---EecHHHHHHH
Q 020815          143 -----------RK-----P----AHIFLDEL-GID--------------------YDEQ---DNYVV---IKHAALFTST  175 (321)
Q Consensus       143 -----------~~-----~----~~~~l~~~-g~~--------------------~~~~---~~~~~---~~~~~~~~~~  175 (321)
                                 .+     +    ....++.+ |+.                    +...   +.+.+   +.+...+.-.
T Consensus        90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~  169 (532)
T COG0578          90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA  169 (532)
T ss_pred             ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence                       00     0    00011111 100                    0000   01111   1122334444


Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +...+. +.|.+++..++|+.+..+++ +.||.+.+.         .+|+..+++|+.||.|+|.+
T Consensus       170 ~a~~A~-~~Ga~il~~~~v~~~~re~~-v~gV~~~D~---------~tg~~~~ira~~VVNAaGpW  224 (532)
T COG0578         170 NARDAA-EHGAEILTYTRVESLRREGG-VWGVEVEDR---------ETGETYEIRARAVVNAAGPW  224 (532)
T ss_pred             HHHHHH-hcccchhhcceeeeeeecCC-EEEEEEEec---------CCCcEEEEEcCEEEECCCcc
Confidence            444444 68999999999999999998 999998652         23456889999999999944

>PRK13748 putative mercuric reductase; Provisional

Probab=99.29  E-value=5e-11  Score=117.65  Aligned_cols=54  Identities=24%  Similarity=0.423  Sum_probs=49.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~  144 (321)
                      .+|||+|||||++|+.+|+.|++. |++|+|||+. .+||.|.+.||++++.+...
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~-~~GG~c~n~gciPsk~l~~~  150 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG-TIGGTCVNVGCVPSKIMIRA  150 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC-cceeeccccCccccHHHHHH
Confidence            369999999999999999999999 9999999997 79999999999998877654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.28  E-value=4.8e-11  Score=115.47  Aligned_cols=136  Identities=18%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCcccchhhhccchHH----HHHHHcCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKPAH----IFLDELGIDY  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--------~~gg~~~~~g~~~~~~~~~~~~~----~~l~~~g~~~  157 (321)
                      +|||||||+|++|+.+|+.|++. |++|+|||+..        ..||.|.+.||++++.+......    +....+|+.+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~   80 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV   80 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence            58999999999999999999999 99999999731        47999999999999887664322    2234566654


Q ss_pred             ccC--CCeEE-EecHHHHHHH---HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          158 DEQ--DNYVV-IKHAALFTST---IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       158 ~~~--~~~~~-~~~~~~~~~~---l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      ...  -+|.. ..+.......   -+....+..|++++.+..   ...+.+.+   .+..          .+++..++++
T Consensus        81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a---~f~~~~~v---~v~~----------~~g~~~~~~~  144 (484)
T TIGR01438        81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA---EFVDKHRI---KATN----------KKGKEKIYSA  144 (484)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE---EEcCCCEE---EEec----------cCCCceEEEe
Confidence            321  11111 1111112211   122334467899987732   12233332   2211          1113357999


Q ss_pred             CeEEEcCCCCC
Q 020815          232 KVVVSSCGHDG  242 (321)
Q Consensus       232 ~~VI~AtG~~~  242 (321)
                      |+||+|||...
T Consensus       145 d~lVIATGs~p  155 (484)
T TIGR01438       145 ERFLIATGERP  155 (484)
T ss_pred             CEEEEecCCCC
Confidence            99999999754

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.28  E-value=9.4e-11  Score=110.57  Aligned_cols=137  Identities=18%  Similarity=0.171  Sum_probs=81.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------ccc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YDE-  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~~-  159 (321)
                      .+||+|||||++|+++|+.|++. |++|+||||.+...-..-.+.     ........+.|+++|+.         .+. 
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~a-----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   75 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSRDYVLGRIRA-----GVLEQGTVDLLREAGVDERMDREGLVHEGT   75 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCCcccCCceeE-----eeECHHHHHHHHHCCChHHHHhcCceecce
Confidence            47999999999999999999999 999999999864210000000     01122233444444431         110 


Q ss_pred             ----CCC------------eEE-EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCC
Q 020815          160 ----QDN------------YVV-IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS  222 (321)
Q Consensus       160 ----~~~------------~~~-~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~  222 (321)
                          ...            ... ......+...|++.+. ..++.++++.+++.+...++....|....           
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~~~~~~~~v~~~~~~~~~~~V~~~~-----------  143 (390)
T TIGR02360        76 EIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEARE-AAGLTTVYDADDVRLHDLAGDRPYVTFER-----------  143 (390)
T ss_pred             EEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHH-hcCCeEEEeeeeEEEEecCCCccEEEEEE-----------
Confidence                000            000 1123455677777765 46889999888877754333223344421           


Q ss_pred             CCCceEEEcCeEEEcCCCCCCC
Q 020815          223 CMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       223 ~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +|+..+++||.||.|+|.+|.+
T Consensus       144 ~g~~~~i~adlvIGADG~~S~V  165 (390)
T TIGR02360       144 DGERHRLDCDFIAGCDGFHGVS  165 (390)
T ss_pred             CCeEEEEEeCEEEECCCCchhh
Confidence            1123579999999999966543

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.28  E-value=9.5e-11  Score=112.46  Aligned_cols=141  Identities=16%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc-hhh-------hccchHHHHHH--------H-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-SAM-------VVRKPAHIFLD--------E-  152 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~-~~~-------~~~~~~~~~l~--------~-  152 (321)
                      ..+|+|||||++||+||.+|.+. |++|+|+|++..+||.+....... +..       .......+-|.        . 
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            46999999999999999999999 999999999998988653221100 000       00001111111        0 


Q ss_pred             cCCCcccC-----CCeEEEecHHHHHHHHHHHHHcCCCcE--EEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          153 LGIDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       153 ~g~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                      ..+++...     .....+....++.++|.+.+. +.++.  ++++++|+++..++++.. |.+..      ..    +.
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~-~fgl~~~I~~~t~V~~V~~~~~~w~-V~~~~------~~----~~  156 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAR-EFKIEEMVRFETEVVRVEPVDGKWR-VQSKN------SG----GF  156 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHH-HcCCcceEEecCEEEEEeecCCeEE-EEEEc------CC----Cc
Confidence            11222110     011112244667777666664 67877  899999999987665432 33321      00    12


Q ss_pred             ceEEEcCeEEEcCCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~  243 (321)
                      ..+..+|.||+|+|.+..
T Consensus       157 ~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        157 SKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             eEEEEcCEEEEeccCCCC
Confidence            235688999999997653

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.28  E-value=7.9e-11  Score=111.64  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ..+...|.+.+. +.|++++.+++|+++... ++++.+|.+..               .++.|+.||+|+|++..
T Consensus       183 ~~l~~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g~i~a~~vVvaagg~~~  241 (407)
T TIGR01373       183 DAVAWGYARGAD-RRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------GFIGAKKVGVAVAGHSS  241 (407)
T ss_pred             HHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------ceEECCEEEECCChhhH
Confidence            445566666665 679999999999999764 56677777632               46999999999997653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.28  E-value=1.5e-10  Score=109.94  Aligned_cols=35  Identities=26%  Similarity=0.601  Sum_probs=32.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      +||+|||||++|+++|++|++. |.+|+|||++..+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            5999999999999999999999 9999999998643

>PLN02463 lycopene beta cyclase

Probab=99.28  E-value=1.3e-10  Score=110.98  Aligned_cols=134  Identities=19%  Similarity=0.249  Sum_probs=82.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-ccchhhhccchHHHHHHH-cC---CCccc-----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDE-LG---IDYDE-----  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-~~~~~~~~~~~~~~~l~~-~g---~~~~~-----  159 (321)
                      .|||+|||||++|+++|+.|++. |++|+|||+.+...   |... +.....+......+.++. +.   +.++.     
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~~~---~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~  103 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPLSI---WPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD  103 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCccch---hccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence            58999999999999999999999 99999999975321   1110 100000000000011111 00   00000     


Q ss_pred             CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ....+...+...+.+.|++++. +.|++++. .+|+++..+++.+ .|.+.+              +.+++|+.||+|+|
T Consensus       104 ~~~~y~~V~R~~L~~~Ll~~~~-~~GV~~~~-~~V~~I~~~~~~~-~V~~~d--------------G~~i~A~lVI~AdG  166 (447)
T PLN02463        104 LDRPYGRVNRKKLKSKMLERCI-ANGVQFHQ-AKVKKVVHEESKS-LVVCDD--------------GVKIQASLVLDATG  166 (447)
T ss_pred             ccCcceeEEHHHHHHHHHHHHh-hcCCEEEe-eEEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEECcC
Confidence            0111222356778888888886 57999974 5899988776643 344432              25899999999999


Q ss_pred             CCCCC
Q 020815          240 HDGPF  244 (321)
Q Consensus       240 ~~~~~  244 (321)
                      ..+.+
T Consensus       167 ~~s~l  171 (447)
T PLN02463        167 FSRCL  171 (447)
T ss_pred             CCcCc
Confidence            87653

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.28  E-value=9.8e-11  Score=109.65  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=83.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccc---------------------hh-------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLF---------------------SA-------  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~---------------------~~-------  139 (321)
                      +|||+|||||++|+++|++|++. |++|+|||++...+  +.++....+.                     ..       
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   81 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE   81 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999 99999999986432  1111100000                     00       


Q ss_pred             -hh-------c--c-----chHHHHHHHcCCCccc---------------CCC-eEE------EecHHHHHHHHHHHHHc
Q 020815          140 -MV-------V--R-----KPAHIFLDELGIDYDE---------------QDN-YVV------IKHAALFTSTIMSKLLA  182 (321)
Q Consensus       140 -~~-------~--~-----~~~~~~l~~~g~~~~~---------------~~~-~~~------~~~~~~~~~~l~~~~~~  182 (321)
                       ..       .  .     ....+.++++|++...               ... ..+      ..+...+...+.+.+. 
T Consensus        82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~-  160 (376)
T PRK11259         82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAR-  160 (376)
T ss_pred             ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHH-
Confidence             00       0  0     0111223344543210               000 000      1234566666666665 


Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +.|++++.+++|+++..+++.+ .|.+..               .+++||.||+|+|.+.
T Consensus       161 ~~gv~i~~~~~v~~i~~~~~~~-~v~~~~---------------g~~~a~~vV~A~G~~~  204 (376)
T PRK11259        161 EAGAELLFNEPVTAIEADGDGV-TVTTAD---------------GTYEAKKLVVSAGAWV  204 (376)
T ss_pred             HCCCEEECCCEEEEEEeeCCeE-EEEeCC---------------CEEEeeEEEEecCcch
Confidence            5799999999999998877643 344421               3689999999999764

>PTZ00367 squalene epoxidase; Provisional

Probab=99.28  E-value=1.5e-10  Score=113.40  Aligned_cols=147  Identities=24%  Similarity=0.273  Sum_probs=87.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCc-----------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY-----------  157 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~-----------  157 (321)
                      .+|||+|||||++|+++|+.|++. |.+|+|+|+.....-... .|     ........+.|+++|+.-           
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~~~~~~r~-~G-----~~L~p~g~~~L~~LGL~d~l~~i~~~~~~  104 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDLFSKPDRI-VG-----ELLQPGGVNALKELGMEECAEGIGMPCFG  104 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEccccccccchh-hh-----hhcCHHHHHHHHHCCChhhHhhcCcceee
Confidence            479999999999999999999999 999999999751100000 00     112334455566665421           


Q ss_pred             ----ccCCCe----------EEEecHHHHHHHHHHHH--HcCCCcEEEcCceEEEEEEECC----EEEEEEEeecce---
Q 020815          158 ----DEQDNY----------VVIKHAALFTSTIMSKL--LARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALV---  214 (321)
Q Consensus       158 ----~~~~~~----------~~~~~~~~~~~~l~~~~--~~~~gv~i~~~~~v~~l~~~~~----~v~gv~~~~~~~---  214 (321)
                          +..+..          ....+...+.+.|.+.+  ....|++++.. +++++..+++    ++.+|.......   
T Consensus       105 ~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~~~~  183 (567)
T PTZ00367        105 YVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEKYDV  183 (567)
T ss_pred             eEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCcccc
Confidence                000100          01123456777777766  33578999765 7888876543    477777642100   


Q ss_pred             ---ecccC-----CCCCCCceEEEcCeEEEcCCCCCC
Q 020815          215 ---SMNHD-----TQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       215 ---~~~~~-----~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                         ....+     +-...++.+++||.||.|+|.++.
T Consensus       184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~  220 (567)
T PTZ00367        184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSK  220 (567)
T ss_pred             cccccccccccccccccccceEEEeCEEEECCCcchH
Confidence               00000     000012468999999999995553

>PRK05868 hypothetical protein; Validated

Probab=99.27  E-value=1.5e-10  Score=108.53  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=78.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc----
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD----  158 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~----  158 (321)
                      ||+|||||++|+++|+.|++. |++|+|||+.+.+......       ........+.|+++|+         ++.    
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~g~~-------i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~   74 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGLRPGGQA-------IDVRGPALDVLERMGLLAAAQEHKTRIRGASF   74 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCcee-------eeeCchHHHHHHhcCCHHHHHhhccCccceEE
Confidence            899999999999999999999 9999999998754321100       0011112223333332         100    


Q ss_pred             --cCC-----------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815          159 --EQD-----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       159 --~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~  219 (321)
                        ..+                 ...+..+...+.+.|.+.+  ..|++++++++++++..+++.+. +...+        
T Consensus        75 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~d--------  143 (372)
T PRK05868         75 VDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT--QPSVEYLFDDSISTLQDDGDSVR-VTFER--------  143 (372)
T ss_pred             EeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc--cCCcEEEeCCEEEEEEecCCeEE-EEECC--------
Confidence              000                 0011223345555444333  46899999999999976665443 33322        


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCCC
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                            +.+++||.||.|+|..+.
T Consensus       144 ------g~~~~adlvIgADG~~S~  161 (372)
T PRK05868        144 ------AAAREFDLVIGADGLHSN  161 (372)
T ss_pred             ------CCeEEeCEEEECCCCCch
Confidence                  257899999999995553

>PRK06996 hypothetical protein; Provisional

Probab=99.26  E-value=2.5e-10  Score=107.92  Aligned_cols=133  Identities=17%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC----CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcc------c
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN----IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD------E  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G----~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~------~  159 (321)
                      ++||+|||||++|+++|+.|++. |    ++|+|+|+.....-.     .............+.|+++|+.-.      .
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~~~~~~-----~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~   84 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDAREPAASA-----NDPRAIALSHGSRVLLETLGAWPADATPIEH   84 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCCCCcCC-----CCceEEEecHHHHHHHHhCCCchhcCCcccE
Confidence            68999999999999999999998 5    579999997532210     011112233445556666654100      0


Q ss_pred             ------C--------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815          160 ------Q--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       160 ------~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~  219 (321)
                            .              +.+.+..+...+.+.|.+++. +.+++++.+++++++..+++.+. +...+       .
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~-v~~~~-------~  155 (398)
T PRK06996         85 IHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVT-LALGT-------P  155 (398)
T ss_pred             EEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEE-EEECC-------C
Confidence                  0              011223455678888888887 56899999999999876665433 22211       0


Q ss_pred             CCCCCCceEEEcCeEEEcCCCC
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                         + ...+++||+||.|+|+.
T Consensus       156 ---~-g~~~i~a~lvIgADG~~  173 (398)
T PRK06996        156 ---Q-GARTLRARIAVQAEGGL  173 (398)
T ss_pred             ---C-cceEEeeeEEEECCCCC
Confidence               0 12579999999999953

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.26  E-value=6.3e-11  Score=105.59  Aligned_cols=138  Identities=25%  Similarity=0.301  Sum_probs=98.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch----HHHHHHHcCCCcccCCCe-
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQDNY-  163 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~-  163 (321)
                      .+||.+|||||..|+++|+++++. |.+|.|+|..-..||+|.+.||.+.+.+.+..    .++...++|++......+ 
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd   97 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASH-GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD   97 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhc-CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence            379999999999999999999999 99999999987899999999999999887753    234445688877554333 


Q ss_pred             -EEEecH-HHH---HHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          164 -VVIKHA-ALF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       164 -~~~~~~-~~~---~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                       ..+... ..+   .+.++++.+++.+++++++.. .  ..+++.+ .|..++            +....++|+++++|+
T Consensus        98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a-~--f~~~~~v-~V~~~d------------~~~~~Ytak~iLIAt  161 (478)
T KOG0405|consen   98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA-R--FVSPGEV-EVEVND------------GTKIVYTAKHILIAT  161 (478)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE-E--EcCCCce-EEEecC------------CeeEEEecceEEEEe
Confidence             222211 122   356677777788899988732 1  1233332 233322            233669999999999


Q ss_pred             CCCCC
Q 020815          239 GHDGP  243 (321)
Q Consensus       239 G~~~~  243 (321)
                      |+...
T Consensus       162 Gg~p~  166 (478)
T KOG0405|consen  162 GGRPI  166 (478)
T ss_pred             CCccC
Confidence            97764

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.25  E-value=4e-11  Score=115.97  Aligned_cols=138  Identities=19%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEec------cCCCCCccccCcccchhhhccch-HHH----HHHHcCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ------SVSPGGGAWLGGQLFSAMVVRKP-AHI----FLDELGIDYD  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk------~~~~gg~~~~~g~~~~~~~~~~~-~~~----~l~~~g~~~~  158 (321)
                      +|||+|||||++|++||+.|++. |++|+|||+      ....||+|.+.+|++.+.+.... ...    .+..+|+++.
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~   82 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD   82 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence            69999999999999999999999 999999998      34689999999998876654431 122    2245666543


Q ss_pred             cC-CCeEEEe-cHHHHHH---HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCe
Q 020815          159 EQ-DNYVVIK-HAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (321)
Q Consensus       159 ~~-~~~~~~~-~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~  233 (321)
                      .. .++.... .......   .-++.+.+..+++++.+. +..+..+++. ..|.+..       +     +..++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~-~~v~v~~-------~-----~~~~~~~d~  148 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAG-YEIKVTG-------E-----DETVITAKH  148 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCC-CEEEEec-------C-----CCeEEEeCE
Confidence            21 1111101 1111111   123344446799998773 4333222211 1122211       0     125799999


Q ss_pred             EEEcCCCCC
Q 020815          234 VVSSCGHDG  242 (321)
Q Consensus       234 VI~AtG~~~  242 (321)
                      ||+|||...
T Consensus       149 lViATGs~p  157 (475)
T PRK06327        149 VIIATGSEP  157 (475)
T ss_pred             EEEeCCCCC
Confidence            999999765

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=5.6e-11  Score=107.66  Aligned_cols=113  Identities=22%  Similarity=0.318  Sum_probs=75.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .|||+||||||+||+||+++++. +++ ++|+|+. .+||..      ..              .. .......+.-...
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~-~~gg~~------~~--------------~~-~venypg~~~~~~   59 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGG-EPGGQL------TK--------------TT-DVENYPGFPGGIL   59 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecC-CcCCcc------cc--------------ce-eecCCCCCccCCc
Confidence            58999999999999999999999 999 6666664 444311      00              00 0000111222234


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ...+.+.+.+++. ..++++.. ..|..+...++ ..-|.+..               .+++||.||+|||....
T Consensus        60 g~~L~~~~~~~a~-~~~~~~~~-~~v~~v~~~~~-~F~v~t~~---------------~~~~ak~vIiAtG~~~~  116 (305)
T COG0492          60 GPELMEQMKEQAE-KFGVEIVE-DEVEKVELEGG-PFKVKTDK---------------GTYEAKAVIIATGAGAR  116 (305)
T ss_pred             hHHHHHHHHHHHh-hcCeEEEE-EEEEEEeecCc-eEEEEECC---------------CeEEEeEEEECcCCccc
Confidence            5677777777776 78999988 46776655544 45555532               34999999999996553

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.25  E-value=9.5e-11  Score=112.23  Aligned_cols=123  Identities=21%  Similarity=0.295  Sum_probs=77.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      +|||+|||||++|++||..|++. |.+|+|||+... .||.|++.+|++.+.+....      +.+.+|...     ...
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~------~~~~~~~~~-----~~~   70 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKAMYGGTCINIGCIPTKTLLVAA------EKNLSFEQV-----MAT   70 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCcccceeeecCccccchHhhhhh------hcCCCHHHH-----HHH
Confidence            59999999999999999999999 999999999864 69999988888876543321      112222110     000


Q ss_pred             HH----HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~----~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..    .+.....+.+ ++.+++++.++. ..  .++.++ .+...             .+..++++|+||+|||...
T Consensus        71 ~~~~~~~~~~~~~~~~-~~~gV~~~~g~~-~~--~~~~~v-~v~~~-------------~~~~~~~~d~vViATGs~~  130 (438)
T PRK07251         71 KNTVTSRLRGKNYAML-AGSGVDLYDAEA-HF--VSNKVI-EVQAG-------------DEKIELTAETIVINTGAVS  130 (438)
T ss_pred             HHHHHHHHHHHHHHHH-HhCCCEEEEEEE-EE--ccCCEE-EEeeC-------------CCcEEEEcCEEEEeCCCCC
Confidence            11    1112222333 357899887742 21  233332 22210             0225799999999999765

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.24  E-value=1.9e-10  Score=115.58  Aligned_cols=136  Identities=19%  Similarity=0.219  Sum_probs=84.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCcccchhhh-----------cc--chHHHHHHHc--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFSAMV-----------VR--KPAHIFLDEL--  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~-gg~~~~~g~~~~~~~-----------~~--~~~~~~l~~~--  153 (321)
                      .+||+|||||++|+++|++|+++ |.+|+|||+...+ .|.+...+......+           ..  ....+++.++  
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~  338 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPA  338 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999 9999999998543 333333222111100           00  0111122211  


Q ss_pred             -CCC--cccCC----------------------------------------------CeEE----EecHHHHHHHHHHHH
Q 020815          154 -GID--YDEQD----------------------------------------------NYVV----IKHAALFTSTIMSKL  180 (321)
Q Consensus       154 -g~~--~~~~~----------------------------------------------~~~~----~~~~~~~~~~l~~~~  180 (321)
                       +..  +...+                                              ....    ..+...+...|++.+
T Consensus       339 ~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a  418 (662)
T PRK01747        339 AGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALA  418 (662)
T ss_pred             cCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhc
Confidence             111  11000                                              0000    123456778888777


Q ss_pred             HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      . + |++++++++|+++..+++.+. |.+.              ++..++|+.||+|+|..+.
T Consensus       419 ~-~-Gv~i~~~~~V~~i~~~~~~~~-v~t~--------------~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        419 G-Q-QLTIHFGHEVARLEREDDGWQ-LDFA--------------GGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             c-c-CcEEEeCCEeeEEEEeCCEEE-EEEC--------------CCcEEECCEEEECCCCCcc
Confidence            6 4 999999999999988777654 4442              1245789999999998763

>PRK14727 putative mercuric reductase; Provisional

Probab=99.24  E-value=1.2e-10  Score=112.81  Aligned_cols=54  Identities=26%  Similarity=0.411  Sum_probs=50.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~  144 (321)
                      .|||+|||+|++|+.+|+.|++. |++|+|||+...+||.|++.||++.+.+...
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~   69 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVIGGCCVNVGCVPSKILIRA   69 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcceeEeccccccccHHHHHH
Confidence            68999999999999999999999 9999999998789999999999998877654

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.24  E-value=2.3e-10  Score=113.79  Aligned_cols=65  Identities=18%  Similarity=0.128  Sum_probs=48.9

Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +...+...|.+.+. +.|++++++++|+++..+  ++++.+|.+.+.         .+++..+++||.||+|+|.++
T Consensus       230 dp~rl~~al~~~A~-~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---------~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        230 NDSRLNVALACTAA-LAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---------LTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             cHHHHHHHHHHHHH-hCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---------CCCcEEEEEeCEEEECCCHhH
Confidence            45677778888876 679999999999999887  478888776431         111234789999999999554

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.24  E-value=9.4e-11  Score=110.36  Aligned_cols=131  Identities=17%  Similarity=0.225  Sum_probs=81.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccchhhhccchHHHHHH-HcC--C--CcccC----C
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFSAMVVRKPAHIFLD-ELG--I--DYDEQ----D  161 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~~~~~~~~~~~~~l~-~~g--~--~~~~~----~  161 (321)
                      ||+|||||++|+++|+.|++. |++|+|||+.+..++.. |.   +....+.......... .+.  .  .+...    .
T Consensus         1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPIPGNHTYG---VWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLG   76 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCCCcccc---ccHhhhhhhchhhHHhhcCCCceEEecCCcchhcC
Confidence            899999999999999999999 99999999987665432 21   1110000000000111 110  0  00000    1


Q ss_pred             CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+...+...+.+.|.+++. +.|++++.. +++++..+++....|.+.+              +.+++|+.||+|+|..
T Consensus        77 ~~~~~i~~~~l~~~l~~~~~-~~gv~~~~~-~v~~i~~~~~~~~~v~~~~--------------g~~~~a~~VI~A~G~~  140 (388)
T TIGR01790        77 TAYGSVDSTRLHEELLQKCP-EGGVLWLER-KAIHAEADGVALSTVYCAG--------------GQRIQARLVIDARGFG  140 (388)
T ss_pred             CceeEEcHHHHHHHHHHHHH-hcCcEEEcc-EEEEEEecCCceeEEEeCC--------------CCEEEeCEEEECCCCc
Confidence            11223456788888888887 458998754 7888876644444454421              2589999999999977


Q ss_pred             C
Q 020815          242 G  242 (321)
Q Consensus       242 ~  242 (321)
                      +
T Consensus       141 s  141 (388)
T TIGR01790       141 P  141 (388)
T ss_pred             h
Confidence            6

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02053 MerA mercuric reductase

Probab=99.23  E-value=7.5e-11  Score=113.71  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHHHHH--cCCCccc-CCCeEE-
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDE--LGIDYDE-QDNYVV-  165 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~l~~--~g~~~~~-~~~~~~-  165 (321)
                      |||+|||||++|+.+|+.|++. |++|+|||+.. .||+|.+.||++.+.+..... .+++.+  +|+.... ..++.. 
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL   78 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence            6999999999999999999999 99999999974 899999999999887765432 233332  2221110 001100 


Q ss_pred             EecHHHHHHHH----HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          166 IKHAALFTSTI----MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       166 ~~~~~~~~~~l----~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ......+...+    ++.+.++.+++++.+. +..  .++..   |.+..             ....+.+|+||+|||..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~--~~~~~---v~v~~-------------g~~~~~~~~lIiATGs~  139 (463)
T TIGR02053        79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARF--KDPKT---VKVDL-------------GREVRGAKRFLIATGAR  139 (463)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEE--ccCCE---EEEcC-------------CeEEEEeCEEEEcCCCC
Confidence            01112222222    2233446789988773 221  22332   22211             11468899999999965


Q ss_pred             C
Q 020815          242 G  242 (321)
Q Consensus       242 ~  242 (321)
                      .
T Consensus       140 p  140 (463)
T TIGR02053       140 P  140 (463)
T ss_pred             C
Confidence            4

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.23  E-value=2.3e-11  Score=103.98  Aligned_cols=130  Identities=21%  Similarity=0.237  Sum_probs=70.4

Q ss_pred             EEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCc---ccchhhhc-cchHHHHHHHcCCC----cccCCCeE
Q 020815           94 VVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGG---QLFSAMVV-RKPAHIFLDELGID----YDEQDNYV  164 (321)
Q Consensus        94 vIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g---~~~~~~~~-~~~~~~~l~~~g~~----~~~~~~~~  164 (321)
                      +|||||++||++|+.|.+. |.+ |+|||++..+||.+....   .+...... .......+..+..+    +.....+ 
T Consensus         1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF-   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT-T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS-
T ss_pred             CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc-
Confidence            6999999999999999999 999 999999988888743110   01000000 00000000000000    0000111 


Q ss_pred             EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                        ....++.++|.+.+ ++.+++++++++|+++..++++ .-|.+..              ..+++|+.||+|+|..+.
T Consensus        79 --~~~~~v~~yl~~~~-~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~--------------~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   79 --PSGEEVLDYLQEYA-ERFGLEIRFNTRVESVRRDGDG-WTVTTRD--------------GRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             --EBHHHHHHHHHHHH-HHTTGGEETS--EEEEEEETTT-EEEEETT--------------S-EEEEEEEEE---SSCS
T ss_pred             --CCHHHHHHHHHHHH-hhcCcccccCCEEEEEEEeccE-EEEEEEe--------------cceeeeeeEEEeeeccCC
Confidence              23455665554444 4678999999999999998876 4455432              258999999999997654

...

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.23  E-value=1.6e-10  Score=110.73  Aligned_cols=124  Identities=21%  Similarity=0.262  Sum_probs=77.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      +|||+|||||++|+.+|+.|++. |++|+|||+.+ ..||.|.+.+|++.+.+.....      ....|...     ...
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~~~~~~~~-----~~~   70 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------QHTDFVRA-----IQR   70 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCCccceeEeeccccchHHHHHHhc------cCCCHHHH-----HHH
Confidence            59999999999999999999999 99999999975 4799998888887754432210      01111100     000


Q ss_pred             HHHHHH----HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~----~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ......    ...+.+.+..+++++.+ ++..+  +.+.+ .|...+             ...++.+|+||+|||...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~~-~v~~~~-------------g~~~~~~d~lviATGs~p  131 (441)
T PRK08010         71 KNEVVNFLRNKNFHNLADMPNIDVIDG-QAEFI--NNHSL-RVHRPE-------------GNLEIHGEKIFINTGAQT  131 (441)
T ss_pred             HHHHHHHHHHhHHHHHhhcCCcEEEEE-EEEEe--cCCEE-EEEeCC-------------CeEEEEeCEEEEcCCCcC
Confidence            111111    12334444558998876 34333  33322 222211             113699999999999754

>PRK06753 hypothetical protein; Provisional

Probab=99.22  E-value=3.1e-10  Score=106.25  Aligned_cols=125  Identities=15%  Similarity=0.208  Sum_probs=77.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc----
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD----  158 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~----  158 (321)
                      ||+|||||++|+++|+.|++. |++|+|+||.+.+....  .+     ........+.|+.+|+         +..    
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~   73 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESVKEVG--AG-----IGIGDNVIKKLGNHDLAKGIKNAGQILSTMNL   73 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcccccc--cc-----eeeChHHHHHHHhcChHHHHHhcCCcccceeE
Confidence            799999999999999999999 99999999987553210  01     0111122223333222         111    


Q ss_pred             --cCCC-----------eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          159 --EQDN-----------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       159 --~~~~-----------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                        ..+.           .....+...+.+.|++.+.   +.+++++++++++..+++.+. +...              +
T Consensus        74 ~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~  135 (373)
T PRK06753         74 LDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDKVT-IHFA--------------D  135 (373)
T ss_pred             EcCCCCEEeecccccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCcEE-EEEC--------------C
Confidence              0010           1112234556566665542   468999999999987666543 3332              2


Q ss_pred             ceEEEcCeEEEcCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~  242 (321)
                      +.++++|.||.|+|..+
T Consensus       136 g~~~~~~~vigadG~~S  152 (373)
T PRK06753        136 GESEAFDLCIGADGIHS  152 (373)
T ss_pred             CCEEecCEEEECCCcch
Confidence            25789999999999444

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.22  E-value=5.7e-11  Score=114.46  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=82.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHH---HHHHcCCCcccC-CCeEE
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYVV  165 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~~~~~~-~~~~~  165 (321)
                      |||+|||||++|+.+|++|++. |++|+|||+ ..+||.|.+.||++.+.+.... ..+   .+..+|++.... .++..
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK   79 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhC-CCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence            8999999999999999999999 999999999 7899999999998887655432 222   244556543211 01000


Q ss_pred             E-ecHHHHHHH---HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          166 I-KHAALFTST---IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       166 ~-~~~~~~~~~---l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      . .....+...   -++.+.++.|++++.+. +..  .+...+ -+....             ...++++|+||+|||..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~--~~~~~~-~v~~~~-------------g~~~~~~d~lVlAtG~~  142 (461)
T TIGR01350        80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKF--LDPGTV-LVTGEN-------------GEETLTAKNIIIATGSR  142 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEE-EEecCC-------------CcEEEEeCEEEEcCCCC
Confidence            0 000111111   12233446789988773 222  233322 111110             11579999999999975


Q ss_pred             C
Q 020815          242 G  242 (321)
Q Consensus       242 ~  242 (321)
                      .
T Consensus       143 p  143 (461)
T TIGR01350       143 P  143 (461)
T ss_pred             C
Confidence            4

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.22  E-value=1e-10  Score=112.62  Aligned_cols=66  Identities=30%  Similarity=0.410  Sum_probs=53.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch----HHHHHHHcCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDY  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~  157 (321)
                      +|||+|||||++|+.+|..|++. |++|+|||+ ...||.|...||++++.+....    ..+.+..+|++.
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~   72 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA   72 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            59999999999999999999999 999999999 5789999989999887665532    223334566543

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.21  E-value=2.4e-10  Score=111.27  Aligned_cols=136  Identities=24%  Similarity=0.338  Sum_probs=88.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc----cCc----ccchhhhcc-chHHHHHHHcCCCcccC-
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----LGG----QLFSAMVVR-KPAHIFLDELGIDYDEQ-  160 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~----~~g----~~~~~~~~~-~~~~~~l~~~g~~~~~~-  160 (321)
                      |||+|||+|++|+.+|..+++. |.+|+|||+.....|.+.    .+|    .+...+-.- ....+..+..++.|... 
T Consensus         1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln   79 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN   79 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence            6999999999999999999999 999999999754333221    011    111111000 01122333333333221 


Q ss_pred             ---CCeEE----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815          161 ---DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (321)
Q Consensus       161 ---~~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~  232 (321)
                         .....    ..+...|...+.+.+.+..|++++.+ .++++..+ ++++.+|.+.+              +..+.|+
T Consensus        80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--------------G~~I~Ad  144 (617)
T TIGR00136        80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--------------GLKFRAK  144 (617)
T ss_pred             cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------------CCEEECC
Confidence               11111    23456677777788876679999877 78888776 77899998853              2579999


Q ss_pred             eEEEcCCCCC
Q 020815          233 VVVSSCGHDG  242 (321)
Q Consensus       233 ~VI~AtG~~~  242 (321)
                      .||+|||.+.
T Consensus       145 ~VILATGtfL  154 (617)
T TIGR00136       145 AVIITTGTFL  154 (617)
T ss_pred             EEEEccCccc
Confidence            9999999873

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.21  E-value=2e-10  Score=103.88  Aligned_cols=112  Identities=21%  Similarity=0.292  Sum_probs=75.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      |||+|||||++|+++|..|++. |.+|+|||+.. +||..+....              +..+       ..+.......
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~-~gg~~~~~~~--------------~~~~-------~~~~~~~~~~   57 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME-PGGQLTTTTE--------------VENY-------PGFPEGISGP   57 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC-CCcceeeccc--------------cccc-------CCCCCCCChH
Confidence            6999999999999999999999 99999999985 5554322110              0000       0010011234


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++...+.+.+. +.++++++ ++|+++..+++.+. +...              +..++++|+||+|+|...
T Consensus        58 ~~~~~l~~~~~-~~gv~~~~-~~v~~v~~~~~~~~-v~~~--------------~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        58 ELMEKMKEQAV-KFGAEIIY-EEVIKVDLSDRPFK-VKTG--------------DGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHH-HcCCeEEE-EEEEEEEecCCeeE-EEeC--------------CCCEEEeCEEEECCCCCc
Confidence            56666666665 57899988 78988877655332 3321              125799999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.21  E-value=8.7e-11  Score=113.37  Aligned_cols=53  Identities=30%  Similarity=0.417  Sum_probs=48.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~  144 (321)
                      +|||+|||||++|+.||+.|++. |++|+|||++ ..||+|.+.||++.+.+...
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~   56 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK-YWGGVCLNVGCIPSKALLRN   56 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCceecCCccccHHHHhh
Confidence            59999999999999999999999 9999999996 78999999999988766543

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.20  E-value=6e-11  Score=117.87  Aligned_cols=56  Identities=21%  Similarity=0.302  Sum_probs=50.7

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCcccchhhhccch
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKP  145 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~~~gg~~~~~g~~~~~~~~~~~  145 (321)
                      .+|||+|||+|++|..+|+.|++. |++|+|||+. ..+||+|.+.||++++.+....
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a  171 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYAT  171 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCccccceeEeCCcchHHHHHHH
Confidence            379999999999999999999999 9999999974 3689999999999999887653

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=5.2e-11  Score=112.12  Aligned_cols=136  Identities=27%  Similarity=0.375  Sum_probs=91.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-cc-------Ccccchhhh-ccchHHHHHHHcCCCcccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WL-------GGQLFSAMV-VRKPAHIFLDELGIDYDEQ  160 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~-------~g~~~~~~~-~~~~~~~~l~~~g~~~~~~  160 (321)
                      +|||+|||||.||+.||+++++. |.+++|+-.+...=|.+ ++       -|.+..+.- .....-+..+..++.|...
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L   82 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML   82 (621)
T ss_pred             CCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence            59999999999999999999999 99999998653221111 00       011111111 1112334556667766432


Q ss_pred             C---CeEE-----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          161 D---NYVV-----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       161 ~---~~~~-----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      .   +..+     ..+...|...+.+.+.+..|+.++.+ .|++|+.+++ +|.||++..              +..+.|
T Consensus        83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--------------G~~~~a  147 (621)
T COG0445          83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--------------GPEFHA  147 (621)
T ss_pred             cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC--------------CCeeec
Confidence            1   1111     12334566777777888899999988 8889998777 699999964              378999


Q ss_pred             CeEEEcCCCC
Q 020815          232 KVVVSSCGHD  241 (321)
Q Consensus       232 ~~VI~AtG~~  241 (321)
                      +.||++||-+
T Consensus       148 ~aVVlTTGTF  157 (621)
T COG0445         148 KAVVLTTGTF  157 (621)
T ss_pred             CEEEEeeccc
Confidence            9999999953

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.19  E-value=8e-10  Score=106.78  Aligned_cols=64  Identities=9%  Similarity=0.110  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +...+...|.+.+. +.|++++++++|+++..+++ .+. +.+..      .   ..++..+++|++||+|+|+++
T Consensus       176 dp~~l~~aL~~~a~-~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~------~---~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       176 DFGALTKQLLGYLV-QNGTTIRFGHEVRNLKRQSDGSWT-VTVKN------T---RTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             CHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCeEE-EEEee------c---cCCceEEEECCEEEECCCcch
Confidence            45677888888887 57999999999999987543 332 33211      0   111235799999999999665

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.18  E-value=1.9e-10  Score=111.81  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=47.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCcccchhhhccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--------~~gg~~~~~g~~~~~~~~~~  144 (321)
                      .|||+|||||++|+.||+.|++. |++|+|||+..        .+||.|.+.||++.+.+...
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~   66 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYA   66 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCCCCccccccccceeccccccchHHHHHH
Confidence            58999999999999999999999 99999999631        37999999999998766544

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.17  E-value=3.3e-10  Score=109.10  Aligned_cols=132  Identities=17%  Similarity=0.299  Sum_probs=83.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH----HHHHHHcCCCcccC---CCeE
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQ---DNYV  164 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~~~~~---~~~~  164 (321)
                      +|+|||+|++|+.+|..|++. |++|+|||++ ..||.|.+.||++.+.+.+...    .+....+|+.+...   .++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK   79 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence            699999999999999999999 9999999997 5899999999999888765422    22334567654211   1111


Q ss_pred             EE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      .. .+.......+   .+...++.+++++.+. +.-+  ++..+. |...+             ...++++|+||+|||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~v~-v~~~~-------------~~~~~~~d~lviATGs  142 (458)
T PRK06912         80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE--TDHRVR-VEYGD-------------KEEVVDAEQFIIAAGS  142 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc--cCCEEE-EeeCC-------------CcEEEECCEEEEeCCC
Confidence            10 0111111111   2233345688887773 3222  333332 22111             1257999999999997


Q ss_pred             CC
Q 020815          241 DG  242 (321)
Q Consensus       241 ~~  242 (321)
                      ..
T Consensus       143 ~p  144 (458)
T PRK06912        143 EP  144 (458)
T ss_pred             CC
Confidence            64

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.16  E-value=1.6e-09  Score=104.81  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP  126 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~  126 (321)
                      .+||+|||||+.|+++|++|++. ++.+|+||||...+
T Consensus         5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~   42 (494)
T PRK05257          5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV   42 (494)
T ss_pred             cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence            58999999999999999999984 48999999997654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.16  E-value=3.2e-10  Score=106.34  Aligned_cols=131  Identities=22%  Similarity=0.323  Sum_probs=80.4

Q ss_pred             cEEEECCChHHHHHHHHh--hcCCCCeEEEEeccCCC--CCc-cccCcccchhhhcc-chH-HHHHHHcCCCcccC----
Q 020815           92 DVVVVGAGSAGLSCAYEL--SKNPNIQIAIIEQSVSP--GGG-AWLGGQLFSAMVVR-KPA-HIFLDELGIDYDEQ----  160 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~L--a~~~G~~V~liEk~~~~--gg~-~~~~g~~~~~~~~~-~~~-~~~l~~~g~~~~~~----  160 (321)
                      ||||||||+||+++|++|  ++. |.+|+|||+....  ... +|   +........ ... ...+..+-+.+...    
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW---~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~   76 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTW---CFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL   76 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCccc---ccccccccchHHHHheecCceEEEeCCCceEE
Confidence            899999999999999999  777 9999999998765  222 22   111111100 000 01111111111111    


Q ss_pred             -CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          161 -DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       161 -~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                       ...+...+...|.+.+.+++. ..++ ++.+..|++|..+++. ..|.+.              ++.+++|+.||+|+|
T Consensus        77 ~~~~Y~~i~~~~f~~~l~~~~~-~~~~-~~~~~~V~~i~~~~~~-~~v~~~--------------~g~~i~a~~VvDa~g  139 (374)
T PF05834_consen   77 IDYPYCMIDRADFYEFLLERAA-AGGV-IRLNARVTSIEETGDG-VLVVLA--------------DGRTIRARVVVDARG  139 (374)
T ss_pred             cccceEEEEHHHHHHHHHHHhh-hCCe-EEEccEEEEEEecCce-EEEEEC--------------CCCEEEeeEEEECCC
Confidence             112334567888889888886 5554 5566799998876662 233332              236899999999999


Q ss_pred             CCCC
Q 020815          240 HDGP  243 (321)
Q Consensus       240 ~~~~  243 (321)
                      ..+.
T Consensus       140 ~~~~  143 (374)
T PF05834_consen  140 PSSP  143 (374)
T ss_pred             cccc
Confidence            5443

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.16  E-value=6.2e-10  Score=107.48  Aligned_cols=60  Identities=12%  Similarity=0.100  Sum_probs=45.3

Q ss_pred             cHHHHHHHHHHHHHcC---CC--cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLAR---PN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~---~g--v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +...+.+.|.+.+.+.   .|  ++++++++|++|..+++.+..|.+..               .+++|++||+|+|+++
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~---------------G~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNR---------------GEIRARFVVVSACGYS  273 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECC---------------CEEEeCEEEECcChhH
Confidence            4456777887777631   45  88999999999988766666666532               4799999999999665

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.16  E-value=2.7e-10  Score=100.73  Aligned_cols=141  Identities=21%  Similarity=0.284  Sum_probs=94.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC------cc------------------------------
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG------GQ------------------------------  135 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~------g~------------------------------  135 (321)
                      .|||||+|.|||+++..+-.. |-.|+|+|+....||++...      .+                              
T Consensus        11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~   89 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP   89 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence            699999999999999999987 66699999999999876421      10                              


Q ss_pred             -cchhhhcc-chHHHHHHH-cCCCcccCC--------CeE----EEecHHHHHHHHHHHH----HcCC-CcEEEcCceEE
Q 020815          136 -LFSAMVVR-KPAHIFLDE-LGIDYDEQD--------NYV----VIKHAALFTSTIMSKL----LARP-NVKLFNAVAAE  195 (321)
Q Consensus       136 -~~~~~~~~-~~~~~~l~~-~g~~~~~~~--------~~~----~~~~~~~~~~~l~~~~----~~~~-gv~i~~~~~v~  195 (321)
                       +...+..+ ...++||+. +++..+...        +-.    ......++...|..++    .+++ -++|..+++|+
T Consensus        90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv  169 (477)
T KOG2404|consen   90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV  169 (477)
T ss_pred             HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence             00011111 235678865 666544310        000    0011233444444333    2222 37899999999


Q ss_pred             EEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          196 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       196 ~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +|..++++|.||+..+          .+|+...+.++.||+|+||++.
T Consensus       170 ~il~n~gkVsgVeymd----------~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  170 DILRNNGKVSGVEYMD----------ASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             eeecCCCeEEEEEEEc----------CCCCccceecCceEEecCCcCc
Confidence            9999999999998854          3345578899999999999984

>PRK07846 mycothione reductase; Reviewed

Probab=99.14  E-value=2.5e-10  Score=109.58  Aligned_cols=129  Identities=20%  Similarity=0.243  Sum_probs=79.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHH---HHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF---LDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~---l~~~g~~~~~~-~~~~  164 (321)
                      +|||+|||+|++|..+|..+  . |++|+|||+. ..||+|.+.||++++.+..... .+.   ..++|+..... -++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   76 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP   76 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence            38999999999999988763  6 9999999995 6899999999999998776532 222   33466542211 0111


Q ss_pred             E-EecHHHHHHHHH----HHH-HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          165 V-IKHAALFTSTIM----SKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       165 ~-~~~~~~~~~~l~----~~~-~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      . ..+.....+.+.    +.. .+..|++++.+... -  .++..|   .+.              ++.++++|++|+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~-~--~~~~~V---~v~--------------~g~~~~~d~lViAT  136 (451)
T PRK07846         77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHAR-F--IGPKTL---RTG--------------DGEEITADQVVIAA  136 (451)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEE-E--ecCCEE---EEC--------------CCCEEEeCEEEEcC
Confidence            0 011111222221    111 33567888877322 1  233432   221              12479999999999


Q ss_pred             CCCC
Q 020815          239 GHDG  242 (321)
Q Consensus       239 G~~~  242 (321)
                      |...
T Consensus       137 Gs~p  140 (451)
T PRK07846        137 GSRP  140 (451)
T ss_pred             CCCC
Confidence            9754

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.11  E-value=9.4e-10  Score=99.73  Aligned_cols=58  Identities=29%  Similarity=0.397  Sum_probs=43.0

Q ss_pred             HHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCC--ceEEEcCeEEEcCCCCC
Q 020815          175 TIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMD--PNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~--~~~i~a~~VI~AtG~~~  242 (321)
                      .++..+.+..|++|+.+++|++|+.+  ++++++|...+.          ++.  ...+.+|.||+|.|+.+
T Consensus       197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~----------~~~~~~~~~~ak~VIlaAGai~  258 (296)
T PF00732_consen  197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN----------DGGVQRRIVAAKEVILAAGAIG  258 (296)
T ss_dssp             HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET----------TTSEEEEEEEEEEEEE-SHHHH
T ss_pred             cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec----------CCcceeeeccceeEEeccCCCC
Confidence            33445555679999999999999886  789999998652          112  35788899999999544

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02730 carot_isom carotene isomerase

Probab=99.11  E-value=1.6e-09  Score=105.38  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+.+.|.+.++ +.|++|+.+++|++|..+++++.+|++.+              +.++.|+.||+|+|..
T Consensus       229 ~~l~~~L~~~~~-~~G~~i~~~~~V~~I~~~~~~~~gv~~~~--------------g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLE-KHGGQIRYRARVTKIILENGKAVGVKLAD--------------GEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHH-HCCCEEEeCCeeeEEEecCCcEEEEEeCC--------------CCEEEcCEEEECCChH
Confidence            355667666665 67999999999999999888899988743              2578999999999843

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.09  E-value=1.2e-09  Score=106.71  Aligned_cols=113  Identities=21%  Similarity=0.279  Sum_probs=78.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      ..|||+|||||++|++||.+|++. |++|+|||+.  +||.+...-.             +-.-.+++         ...
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~~--~GG~~~~~~~-------------~~~~~~~~---------~~~  264 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAER--FGGQVLDTMG-------------IENFISVP---------ETE  264 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC--CCCeeeccCc-------------ccccCCCC---------CCC
Confidence            469999999999999999999999 9999999874  5664321000             00000111         123


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..++.+.+.+.+. +.|++++.+++|+++..+++.. .+.+.              ++.+++++.||+|||...
T Consensus       265 ~~~l~~~l~~~~~-~~gv~i~~~~~V~~I~~~~~~~-~V~~~--------------~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        265 GPKLAAALEEHVK-EYDVDIMNLQRASKLEPAAGLI-EVELA--------------NGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEcCEEEECCCCCc
Confidence            4567777777776 5789999999999998765432 23332              125799999999999754

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.09  E-value=2.9e-09  Score=102.62  Aligned_cols=38  Identities=34%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP  126 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~  126 (321)
                      ..+||||||||++|+++|+.|++. |+.+|+|+||.+.+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~   43 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP   43 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence            368999999999999999999984 58999999994344

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.08  E-value=1e-09  Score=105.92  Aligned_cols=134  Identities=21%  Similarity=0.314  Sum_probs=85.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-H---HHHHHHcCCCccc----CCCe
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-A---HIFLDELGIDYDE----QDNY  163 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~---~~~l~~~g~~~~~----~~~~  163 (321)
                      ||+|||+|++|+.+|..|++. |.+|+|||+. ..||.|.+.||++.+.+.... .   .+....+|+....    .-++
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL   80 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence            899999999999999999999 9999999997 589999999999988765542 2   2334456665421    0111


Q ss_pred             EEE-ecHHHH----HHHHHHHHHcCCCcEEEcCceEEEEE--EECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815          164 VVI-KHAALF----TSTIMSKLLARPNVKLFNAVAAEDLI--VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (321)
Q Consensus       164 ~~~-~~~~~~----~~~l~~~~~~~~gv~i~~~~~v~~l~--~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~  236 (321)
                      ... .+...+    ...+.+.+. ..|++++.+ +++.+.  .+++.+. |...            +|+..++.+|+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~-~~gV~~~~g-~~~~~~~~~~~~~v~-V~~~------------~g~~~~~~~d~lVi  145 (466)
T PRK07845         81 PAVNARVKALAAAQSADIRARLE-REGVRVIAG-RGRLIDPGLGPHRVK-VTTA------------DGGEETLDADVVLI  145 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEE-EEEEeecccCCCEEE-EEeC------------CCceEEEecCEEEE
Confidence            110 111111    223333343 579999988 343332  2333322 2221            11224799999999


Q ss_pred             cCCCCC
Q 020815          237 SCGHDG  242 (321)
Q Consensus       237 AtG~~~  242 (321)
                      |||...
T Consensus       146 ATGs~p  151 (466)
T PRK07845        146 ATGASP  151 (466)
T ss_pred             cCCCCC
Confidence            999765

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.06  E-value=3.9e-09  Score=100.36  Aligned_cols=125  Identities=19%  Similarity=0.302  Sum_probs=75.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------c
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------Y  157 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-------------~  157 (321)
                      +|+|||||++||++|+.|++. | ++|+|+||.+..+...   ..    +.......+.|+++|+.             +
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~G---~g----i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   73 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEVG---AG----VSFGANAVRAIVGLGLGEAYTQVADSTPAPW   73 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCCc---cc----eeeCccHHHHHHHcCChhHHHHHhcCCCccC
Confidence            699999999999999999998 6 6999999987653210   00    01111222333333321             0


Q ss_pred             c-------c-C-CCeE----------EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          158 D-------E-Q-DNYV----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       158 ~-------~-~-~~~~----------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                      .       . . ..+.          ...+...+.+.|++.+   .+..++++++|+++..+++.+. +...        
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~---~~~~v~~~~~v~~i~~~~~~~~-v~~~--------  141 (414)
T TIGR03219        74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEEVQ-VLFT--------  141 (414)
T ss_pred             cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhC---CCceEEcCCEEEEEEecCCcEE-EEEc--------
Confidence            0       0 0 0000          0123445556665544   2466888999999987666532 3332        


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                            ++.++++|.||+|+|..+
T Consensus       142 ------~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219       142 ------DGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ------CCCEEEeeEEEECCCccH
Confidence                  125799999999999544

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.05  E-value=2e-09  Score=105.96  Aligned_cols=111  Identities=19%  Similarity=0.262  Sum_probs=73.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .|||+|||||+||++||+.|++. |++|+|||++ ..||.+........             ..+..         ....
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~-~~GG~~~~~~~i~~-------------~pg~~---------~~~~   59 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKD-DFGGQITITSEVVN-------------YPGIL---------NTTG   59 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCceEEecccccc-------------CCCCc---------CCCH
Confidence            48999999999999999999999 9999999996 56665432111000             00000         1123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.|++++ .++|+.+..+++ ...+.+..               ..+.++.||+|||...
T Consensus        60 ~~l~~~l~~~~~-~~gv~~~-~~~V~~i~~~~~-~~~V~~~~---------------g~~~a~~lVlATGa~p  114 (555)
T TIGR03143        60 PELMQEMRQQAQ-DFGVKFL-QAEVLDVDFDGD-IKTIKTAR---------------GDYKTLAVLIATGASP  114 (555)
T ss_pred             HHHHHHHHHHHH-HcCCEEe-ccEEEEEEecCC-EEEEEecC---------------CEEEEeEEEECCCCcc
Confidence            456666666654 5789986 557888765443 33333321               3588999999999865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03452 mycothione_red mycothione reductase

Probab=99.04  E-value=2.3e-09  Score=103.09  Aligned_cols=129  Identities=20%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HH---HHHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~---~l~~~g~~~~~~-~~~~  164 (321)
                      +|||+|||+|++|..+|..  .. |++|+|||+. ..||+|.+.||++.+.+..... .+   ...++|+..... -+|.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~   77 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP   77 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence            5899999999999998654  36 9999999985 6899999999999998876532 22   334456532110 0111


Q ss_pred             EEecH-HH-HHHHHH----HHHH--cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815          165 VIKHA-AL-FTSTIM----SKLL--ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (321)
Q Consensus       165 ~~~~~-~~-~~~~l~----~~~~--~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~  236 (321)
                      ..... .. ..+.+.    ....  +..|++++.++.+..   +..++   .+.              ++.++++|+||+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V---~~~--------------~g~~~~~d~lIi  137 (452)
T TIGR03452        78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTL---RTG--------------DGEEITGDQIVI  137 (452)
T ss_pred             HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEE---EEC--------------CCcEEEeCEEEE
Confidence            10000 01 111111    1111  236888888754322   33322   221              124689999999


Q ss_pred             cCCCCC
Q 020815          237 SCGHDG  242 (321)
Q Consensus       237 AtG~~~  242 (321)
                      |||...
T Consensus       138 ATGs~p  143 (452)
T TIGR03452       138 AAGSRP  143 (452)
T ss_pred             EECCCC
Confidence            999765

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.04  E-value=1.8e-09  Score=106.54  Aligned_cols=131  Identities=16%  Similarity=0.267  Sum_probs=91.3

Q ss_pred             HHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cccc------------ch----h---------------hhcc--chHHH
Q 020815          103 LSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL------------FS----A---------------MVVR--KPAHI  148 (321)
Q Consensus       103 l~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~------------~~----~---------------~~~~--~~~~~  148 (321)
                      |+||+.+++. |.+|+||||....++++.. +|.+            +.    .               .+..  ...++
T Consensus         1 l~AAl~aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~   79 (570)
T PRK05675          1 MRAALQLAQG-GHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVF   79 (570)
T ss_pred             ChhHHhHHhc-CCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            4789999998 9999999998766655321 1111            00    0               0000  13568


Q ss_pred             HHHHcCCCcccCCC--eE------------------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CC
Q 020815          149 FLDELGIDYDEQDN--YV------------------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GG  202 (321)
Q Consensus       149 ~l~~~g~~~~~~~~--~~------------------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~  202 (321)
                      ||+++|++|+...+  +.                  ..     ..+..+...|.+++. +.||+++.++.+++|+.+ ++
T Consensus        80 ~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~~~g  158 (570)
T PRK05675         80 ELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNL-KNGTTFLNEWYAVDLVKNQDG  158 (570)
T ss_pred             HHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHh-ccCCEEEECcEEEEEEEcCCC
Confidence            99999999976321  10                  00     124567888888876 679999999999999985 68


Q ss_pred             EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +|.||...+.         .+++...|.||.||+||||++..
T Consensus       159 ~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        159 AVVGVIAICI---------ETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             eEEEEEEEEc---------CCCcEEEEecCeEEECCCCcccc
Confidence            9999987421         12345789999999999998843

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.04  E-value=2.2e-09  Score=100.86  Aligned_cols=39  Identities=36%  Similarity=0.703  Sum_probs=34.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ++||+|||||++|+++|++|++. |.+|+|+|+....+|+
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~g~   42 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGGGA   42 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCCcc
Confidence            58999999999999999999999 9999999998755433

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.04  E-value=3.4e-09  Score=103.48  Aligned_cols=114  Identities=18%  Similarity=0.283  Sum_probs=77.4

Q ss_pred             CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      ...|||+|||||++|++||+.|++. |++|+|||.  .+||.+...-.             +-.-.+.+         ..
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~--~~GG~~~~~~~-------------~~~~~~~~---------~~  264 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE--RIGGQVKDTVG-------------IENLISVP---------YT  264 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec--CCCCccccCcC-------------cccccccC---------CC
Confidence            3469999999999999999999999 999999985  35554321000             00000111         01


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ....+...+.+.+. +.|++++.+++|+++..+++.. .+.+.              ++.++.+|.+|+|+|...
T Consensus       265 ~~~~l~~~l~~~l~-~~gv~i~~~~~V~~I~~~~~~~-~v~~~--------------~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       265 TGSQLAANLEEHIK-QYPIDLMENQRAKKIETEDGLI-VVTLE--------------SGEVLKAKSVIVATGARW  323 (515)
T ss_pred             CHHHHHHHHHHHHH-HhCCeEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEeCEEEECCCCCc
Confidence            23556677777766 5699999999999987665432 23332              125799999999999753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.03  E-value=3.4e-09  Score=102.75  Aligned_cols=40  Identities=38%  Similarity=0.612  Sum_probs=37.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+||||||||+.||+||..|++. |++|+|+||+..+||.+
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~a   42 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGRA   42 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcce
Confidence            58999999999999999999999 99999999999988754

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.03  E-value=3.7e-09  Score=94.21  Aligned_cols=59  Identities=17%  Similarity=0.077  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE--ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV--KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~--~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ++....+.+.+.++ +.|+.++.+.+|+.+..  +++..+.|++.+              +..+.||.+|+++|++
T Consensus       151 ~a~kslk~~~~~~~-~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~--------------gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  151 NAAKSLKALQDKAR-ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD--------------GSIYHAKKIIFTVGAW  211 (399)
T ss_pred             eHHHHHHHHHHHHH-HcCeEEecCcceeeEeeccCCCceeEEEecc--------------CCeeecceEEEEecHH
Confidence            44566677777776 78999999999887765  356667777753              3569999999999943

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.01  E-value=8.5e-09  Score=99.83  Aligned_cols=41  Identities=32%  Similarity=0.568  Sum_probs=36.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~~  130 (321)
                      ..+++|||||++||+||++|++.   +|.+|+|+|+.+.+||.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~   65 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL   65 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence            36899999999999999999985   378999999999998875

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.01  E-value=6.7e-09  Score=101.23  Aligned_cols=56  Identities=16%  Similarity=0.103  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      ..+.+.|.+.+. +.|++|+.++.|++|..+++++++|++.+              +.++.||.||+|++.
T Consensus       219 ~~l~~al~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~V~~~~--------------g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       219 GALVAAMAKLAE-DLGGELRLNAEVIRIETEGGRATAVHLAD--------------GERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHH-HCCCEEEECCeEEEEEeeCCEEEEEEECC--------------CCEEECCEEEECCcH
Confidence            345566666665 67999999999999998888888887743              257899999999883

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.01  E-value=1.2e-08  Score=101.03  Aligned_cols=133  Identities=19%  Similarity=0.269  Sum_probs=78.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCcccchhhhccchHHHHHHHcCC------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFSAMVVRKPAHIFLDELGI------------  155 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~-gg~~~~~g~~~~~~~~~~~~~~~l~~~g~------------  155 (321)
                      ..++|+|||||++|+++|+.|++. |++|+|+|+.... .+..+.++.    +.......+.|+++|+            
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~~~~r~~G~~~~~----I~L~pngl~aLe~LGl~~~e~l~~~g~~  154 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDLSAIRGEGKYRGP----IQIQSNALAALEAIDIDVAEQVMEAGCI  154 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccccccccccccCcc----cccCHHHHHHHHHcCcchHHHHHhhcCc
Confidence            358999999999999999999999 9999999997521 111000000    1111112222222221            


Q ss_pred             ------------------Cccc-----CC--CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEe
Q 020815          156 ------------------DYDE-----QD--NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN  210 (321)
Q Consensus       156 ------------------~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~  210 (321)
                                        .++.     ..  .+....+...+.+.|.+.+.   ...++++++|+++..+++.+. +.+.
T Consensus       155 ~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~~~d~Vt-V~~~  230 (668)
T PLN02927        155 TGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFEDSGDKVT-VVLE  230 (668)
T ss_pred             ccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEEeCCEEE-EEEC
Confidence                              0000     00  11123345556666654432   123678889999988777665 4432


Q ss_pred             ecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       211 ~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                                    ++.++++|.||.|+|.++..
T Consensus       231 --------------dG~ti~aDlVVGADG~~S~v  250 (668)
T PLN02927        231 --------------NGQRYEGDLLVGADGIWSKV  250 (668)
T ss_pred             --------------CCCEEEcCEEEECCCCCcHH
Confidence                          12578999999999976643

>PRK10262 thioredoxin reductase; Provisional

Probab=99.01  E-value=5.3e-09  Score=96.03  Aligned_cols=114  Identities=12%  Similarity=0.179  Sum_probs=71.4

Q ss_pred             CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      ...+||+|||||++|++||+.|++. |.++++||+. ..||.+......                .+++..     ....
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~-~~gg~~~~~~~~----------------~~~~~~-----~~~~   60 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM-EKGGQLTTTTEV----------------ENWPGD-----PNDL   60 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee-cCCCceecCceE----------------CCCCCC-----CCCC
Confidence            3478999999999999999999999 9999999965 456543221110                011110     0011


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ....+.+.+.+.+. ..+++++.+ +++.+...++.+. +..               +...+.+|.||+|||...
T Consensus        61 ~~~~~~~~~~~~~~-~~~~~~~~~-~v~~v~~~~~~~~-v~~---------------~~~~~~~d~vilAtG~~~  117 (321)
T PRK10262         61 TGPLLMERMHEHAT-KFETEIIFD-HINKVDLQNRPFR-LTG---------------DSGEYTCDALIIATGASA  117 (321)
T ss_pred             CHHHHHHHHHHHHH-HCCCEEEee-EEEEEEecCCeEE-EEe---------------cCCEEEECEEEECCCCCC
Confidence            23445555555554 456677665 5666665555322 111               113689999999999764

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=7.3e-09  Score=92.32  Aligned_cols=142  Identities=20%  Similarity=0.230  Sum_probs=84.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-C-------CCCCccccCcccchhhhccch----HHHHHHHcCCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-V-------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGID  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~-------~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~  156 (321)
                      .+||+||||||.+||+||-+++.. |.+|.++|-- +       ..||+|.+.||++.+++....    .++....+|+.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~   96 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN   96 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence            479999999999999999999999 9999999942 1       247888888999988876653    34555677877


Q ss_pred             cccCCCeEEEec-HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEcCe
Q 020815          157 YDEQDNYVVIKH-AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (321)
Q Consensus       157 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~  233 (321)
                      .+...    +.| =..+.+.+.+++. ..|--++..-+-..+.+.+  +.+++-..   +...+    ..++...+.|+.
T Consensus        97 ~~e~~----ikhdW~~l~~sVqnhI~-s~NW~yRv~LreKkV~Y~NsygeFv~~h~---I~at~----~~gk~~~~ta~~  164 (503)
T KOG4716|consen   97 VDEQK----IKHDWNKLVKSVQNHIK-SLNWGYRVQLREKKVEYINSYGEFVDPHK---IKATN----KKGKERFLTAEN  164 (503)
T ss_pred             Ccccc----ccccHHHHHHHHHHHhh-hccceEEEEeccceeeeeecceeecccce---EEEec----CCCceEEeecce
Confidence            65431    111 1234455555553 2221111111111222221  11111000   00011    122457899999


Q ss_pred             EEEcCCCCCC
Q 020815          234 VVSSCGHDGP  243 (321)
Q Consensus       234 VI~AtG~~~~  243 (321)
                      +|+|+|.+..
T Consensus       165 fvIatG~RPr  174 (503)
T KOG4716|consen  165 FVIATGLRPR  174 (503)
T ss_pred             EEEEecCCCC
Confidence            9999997664

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=1.3e-09  Score=100.89  Aligned_cols=136  Identities=24%  Similarity=0.323  Sum_probs=85.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCccc-------cCcccchhhh-ccchHHHHHHHcCCCcccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAW-------LGGQLFSAMV-VRKPAHIFLDELGIDYDEQ  160 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~~-------~~g~~~~~~~-~~~~~~~~l~~~g~~~~~~  160 (321)
                      .|||||||||.||+.||.++++. |.+++|+..+-. +|--+.       .-|.+..+.- ...-..+..+..++.|.-.
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L  106 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL  106 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhc-CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence            69999999999999999999999 999999987532 221110       0111111111 1111223444455544321


Q ss_pred             ---CCeEE-----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-----EEEEEEeecceecccCCCCCCCce
Q 020815          161 ---DNYVV-----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-----VGGVVTNWALVSMNHDTQSCMDPN  227 (321)
Q Consensus       161 ---~~~~~-----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-----v~gv~~~~~~~~~~~~~~~~g~~~  227 (321)
                         .+..+     ..+.+.|...+.+.+...++.+|+.+ .|.+|+..++.     |.||...+              +.
T Consensus       107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d--------------gt  171 (679)
T KOG2311|consen  107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD--------------GT  171 (679)
T ss_pred             hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec--------------Cc
Confidence               11112     22345566666666666688999988 78888876433     78888754              37


Q ss_pred             EEEcCeEEEcCCCC
Q 020815          228 VMEAKVVVSSCGHD  241 (321)
Q Consensus       228 ~i~a~~VI~AtG~~  241 (321)
                      .+.|+.||+.||-+
T Consensus       172 ~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  172 VVYAESVILTTGTF  185 (679)
T ss_pred             EeccceEEEeeccc
Confidence            89999999999953

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.98  E-value=4.2e-09  Score=101.12  Aligned_cols=136  Identities=23%  Similarity=0.357  Sum_probs=92.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccc------------hHHHHHHHcCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRK------------PAHIFLDELGID  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~------------~~~~~l~~~g~~  156 (321)
                      ..||+|||||.+|+.+||+|++. |.+ .+++|+.....|++|....+........            -..+..++.|++
T Consensus        39 ~A~vvViggG~~g~~~~yhlak~-g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~  117 (856)
T KOG2844|consen   39 TADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLH  117 (856)
T ss_pred             cccEEEEcCCchhHHHHHHHHHc-cccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCCC
Confidence            46999999999999999999999 998 5566666666677666544332211110            011223344443


Q ss_pred             --cccCCCeEE------------------------------------------------------EecHHHHHHHHHHHH
Q 020815          157 --YDEQDNYVV------------------------------------------------------IKHAALFTSTIMSKL  180 (321)
Q Consensus       157 --~~~~~~~~~------------------------------------------------------~~~~~~~~~~l~~~~  180 (321)
                        |...+...+                                                      ..+...+...|...+
T Consensus       118 tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A  197 (856)
T KOG2844|consen  118 TGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAA  197 (856)
T ss_pred             cceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHH
Confidence              222221111                                                      223455667766666


Q ss_pred             HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      . +.|+.|++++.|++|..+.+++.+|.+..               ..|++.+||.|+|-++
T Consensus       198 ~-~~GA~viE~cpV~~i~~~~~~~~gVeT~~---------------G~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  198 S-ALGALVIENCPVTGLHVETDKFGGVETPH---------------GSIETECVVNAAGVWA  243 (856)
T ss_pred             H-hcCcEEEecCCcceEEeecCCccceeccC---------------cceecceEEechhHHH
Confidence            5 78999999999999999888888998853               5799999999999554

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.98  E-value=4.7e-09  Score=100.73  Aligned_cols=68  Identities=18%  Similarity=0.265  Sum_probs=48.8

Q ss_pred             CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      .+.+..+...|.+.|.+.+. +.|++++.+ +|+++..+ ++.+..|.+.+              +.+++||+||+|+|.
T Consensus       146 ~~ayhlDR~~fd~~L~~~A~-~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~--------------g~~i~ad~~IDASG~  209 (454)
T PF04820_consen  146 NYAYHLDRAKFDQFLRRHAE-ERGVEVIEG-TVVDVELDEDGRITAVRLDD--------------GRTIEADFFIDASGR  209 (454)
T ss_dssp             S-EEEEEHHHHHHHHHHHHH-HTT-EEEET--EEEEEE-TTSEEEEEEETT--------------SEEEEESEEEE-SGG
T ss_pred             CeeEEEeHHHHHHHHHHHHh-cCCCEEEeC-EEEEEEEcCCCCEEEEEECC--------------CCEEEEeEEEECCCc
Confidence            45556677889999988887 569999998 57777765 57788888743              378999999999997


Q ss_pred             CCCCc
Q 020815          241 DGPFG  245 (321)
Q Consensus       241 ~~~~~  245 (321)
                      .+.+.
T Consensus       210 ~s~L~  214 (454)
T PF04820_consen  210 RSLLA  214 (454)
T ss_dssp             G-CCC
T ss_pred             cchhh
Confidence            66554

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.97  E-value=1e-08  Score=107.25  Aligned_cols=124  Identities=24%  Similarity=0.285  Sum_probs=77.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||+||++||+.|++. |++|+|+|+...+||..+...                  .  .++       ....
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~GG~~~~~~------------------~--~~~-------g~~~  214 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAGGSLLSEA------------------E--TID-------GKPA  214 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCeeeccc------------------c--ccC-------CccH
Confidence            58999999999999999999999 999999999988777543210                  0  000       0123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .++...+.+++.+..+++++.+++|..+. +++.+..+....................+++++.||+|||...
T Consensus       215 ~~~~~~~~~~l~~~~~v~v~~~t~V~~i~-~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~  286 (985)
T TIGR01372       215 ADWAAATVAELTAMPEVTLLPRTTAFGYY-DHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE  286 (985)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCEEEEEe-cCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence            45555667777655579999999998773 2333332221110000000000000123789999999999754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.97  E-value=2.3e-09  Score=104.42  Aligned_cols=137  Identities=16%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-------ccchhhhccchHHHHHHHcCCCcccCCCeE
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-------QLFSAMVVRKPAHIFLDELGIDYDEQDNYV  164 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  164 (321)
                      .|+|||||++||++|..|.+. |++++++||.+.+||.+....       ..++.+..+. ..+.+.-..+++.  ++++
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~-sk~~~~fsdfp~p--~~~p   78 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNT-SKEMMAFSDFPFP--EDYP   78 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS--GGGSCCTTS-HC--CCCS
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEee-CchHhcCCCcCCC--CCCC
Confidence            699999999999999999999 999999999999998743221       1111111110 0000000112222  2333


Q ss_pred             EEecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEECC-E---EEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          165 VIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-R---VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~~-~---v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      ...+..++.++|.+.+. +.++  .|.++++|+++...++ .   -.-|.+.           .++...+-..|.||+|+
T Consensus        79 ~f~~~~~v~~Yl~~Ya~-~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-----------~~g~~~~~~fD~Vvvat  146 (531)
T PF00743_consen   79 DFPSHSEVLEYLESYAE-HFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-----------NDGKEETEEFDAVVVAT  146 (531)
T ss_dssp             SSEBHHHHHHHHHHHHH-HTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-----------TTTEEEEEEECEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHh-hhCCcceEEEccEEeEeeeccccCCCceEEEEee-----------cCCeEEEEEeCeEEEcC
Confidence            34456777777666664 4555  5899999999987643 1   1222221           11233455679999999


Q ss_pred             CCCCCC
Q 020815          239 GHDGPF  244 (321)
Q Consensus       239 G~~~~~  244 (321)
                      |.++.+
T Consensus       147 G~~~~P  152 (531)
T PF00743_consen  147 GHFSKP  152 (531)
T ss_dssp             -SSSCE
T ss_pred             CCcCCC
Confidence            987643

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.96  E-value=1.7e-09  Score=101.51  Aligned_cols=45  Identities=22%  Similarity=0.534  Sum_probs=39.4

Q ss_pred             cccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           85 MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        85 ~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .....+|||+|||||..|..||+-++-+ |+||.|+|+++...|++
T Consensus        62 l~~~~~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   62 LKSTHEFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFASGTS  106 (680)
T ss_pred             hhcCCcccEEEECCCccCcceeehhhcc-cceeEEEecccccCCcc
Confidence            3444579999999999999999999999 99999999998776665

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.96  E-value=1e-08  Score=91.37  Aligned_cols=152  Identities=26%  Similarity=0.346  Sum_probs=92.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--CCCCcc-ccCcccch----------------------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--SPGGGA-WLGGQLFS----------------------------  138 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--~~gg~~-~~~g~~~~----------------------------  138 (321)
                      ++||||||+|.+||.+|.+|+.. |++|+|+|+..  ..||.. |.-|.++-                            
T Consensus         5 ~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F   83 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF   83 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhc-CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence            68999999999999999999999 99999999864  344433 33222110                            


Q ss_pred             ----hhhcc-----------chHHHHHHHcCCCcccC------------------CCeEE-Eec----HHHHHHHHHHHH
Q 020815          139 ----AMVVR-----------KPAHIFLDELGIDYDEQ------------------DNYVV-IKH----AALFTSTIMSKL  180 (321)
Q Consensus       139 ----~~~~~-----------~~~~~~l~~~g~~~~~~------------------~~~~~-~~~----~~~~~~~l~~~~  180 (321)
                          ....+           .+...||...|+.|-..                  +.+.+ +..    -..|.+.+.+..
T Consensus        84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re~~  163 (552)
T COG3573          84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLREAQ  163 (552)
T ss_pred             CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHHHH
Confidence                00000           01234555556543211                  11111 111    134556655544


Q ss_pred             HcCCCcEEEcCceEEEEEEECCEEEEEEEeec-ceecccCCCCC---CCceEEEcCeEEEcCCCCCC
Q 020815          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQSC---MDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~-~~~~~~~~~~~---g~~~~i~a~~VI~AtG~~~~  243 (321)
                      . ..-+++.+.++|..+...+++|+||.-.-- ..........+   ....+++|..||+++|+.+.
T Consensus       164 ~-~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGG  229 (552)
T COG3573         164 R-RGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGG  229 (552)
T ss_pred             h-CCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcCC
Confidence            3 677999999999999999999999864210 00000000000   01257899999999999873

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.95  E-value=1.5e-08  Score=98.59  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG  134 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g  134 (321)
                      |||+|||+|++|+.+|+.|++. |++|+|||++...|+ .|.++
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~-~~~g~   42 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSF-LKIGA   42 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCC-Ccccc
Confidence            6999999999999999999999 999999999987763 44343

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK07233 hypothetical protein; Provisional

Probab=98.95  E-value=1.9e-08  Score=95.89  Aligned_cols=38  Identities=37%  Similarity=0.647  Sum_probs=35.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|+|||||++||+||+.|++. |++|+|+|+++.+||.+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~~   38 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGLA   38 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCce
Confidence            589999999999999999999 99999999999998865

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=1.2e-08  Score=96.93  Aligned_cols=138  Identities=18%  Similarity=0.169  Sum_probs=85.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-------ccchhhhccchHHHHHHHcCCCcccCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-------QLFSAMVVRKPAHIFLDELGIDYDEQDN  162 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-------~~~~~~~~~~~~~~~l~~~g~~~~~~~~  162 (321)
                      .-+|+|||||++||++|..|.+. |++|+++||...+||-+....       .+++.+..+ -..+.+.-..++|.... 
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn-~pKe~~~~~dfpf~~~~-   82 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTN-LPKEMMGYSDFPFPERD-   82 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccceEeecCcccccccchhhhhhcc-CChhhhcCCCCCCcccC-
Confidence            35999999999999999999999 999999999999988643210       111111111 11122222334444331 


Q ss_pred             eEEEecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          163 YVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      -....+..++.++|.+-+. +.++  .|.+++++..+...+ ++. .|...+      ..+    ...+..+|.||+|+|
T Consensus        83 ~~~~p~~~e~~~YL~~yA~-~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~------~~~----~~~~~ifd~VvVctG  150 (448)
T KOG1399|consen   83 PRYFPSHREVLEYLRDYAK-HFDLLKMINFNTEVVRVDSIDKGKW-RVTTKD------NGT----QIEEEIFDAVVVCTG  150 (448)
T ss_pred             cccCCCHHHHHHHHHHHHH-hcChhhheEecccEEEEeeccCCce-eEEEec------CCc----ceeEEEeeEEEEccc
Confidence            1112344577777666554 6665  688888888887665 433 333321      111    135778999999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      ++-
T Consensus       151 h~~  153 (448)
T KOG1399|consen  151 HYV  153 (448)
T ss_pred             CcC
Confidence            883

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.91  E-value=5.2e-08  Score=94.77  Aligned_cols=39  Identities=49%  Similarity=0.762  Sum_probs=36.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .||||||||++||+||..|++. |++|+|+|++..+||.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG~~   40 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGGCA   40 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence            4899999999999999999999 99999999999888654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.91  E-value=6.6e-08  Score=91.60  Aligned_cols=60  Identities=17%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++.+.|.+.+. +.|++++.+++|.++..+++++..+....            +....++||.||+|+|.+..
T Consensus       260 rL~~aL~~~l~-~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~------------g~~~~i~AD~VVLAtGrf~s  319 (422)
T PRK05329        260 RLQNALRRAFE-RLGGRIMPGDEVLGAEFEGGRVTAVWTRN------------HGDIPLRARHFVLATGSFFS  319 (422)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEEEEeeC------------CceEEEECCEEEEeCCCccc
Confidence            34455666665 67999999999999998888776665421            23367999999999997643

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.90  E-value=1e-08  Score=96.04  Aligned_cols=124  Identities=22%  Similarity=0.371  Sum_probs=75.6

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCc-cccCcccchhhhccchHHHHHHHc-CCCccc-------C-
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHIFLDEL-GIDYDE-------Q-  160 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~-~~~~g~~~~~~~~~~~~~~~l~~~-g~~~~~-------~-  160 (321)
                      ||+|||||++|+++|++|++. +|++|+|||+.+..++. .|.   +...-. ......+++.+ ...|..       . 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~---~~~~~~-~~~~~~~~~~~v~~~W~~~~v~~~~~~   76 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS---FFDSDL-SDAQHAWLADLVQTDWPGYEVRFPKYR   76 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce---eccccc-chhhhhhhhhhheEeCCCCEEECcchh
Confidence            899999999999999999973 58999999998766653 331   111000 11111122211 111110       0 


Q ss_pred             ---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          161 ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       161 ---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                         ...+...+..+|.+.+++++.  .+  ++.+++|+++  +++.   |.+.              ++.+++|+.||.|
T Consensus        77 ~~l~~~Y~~I~r~~f~~~l~~~l~--~~--i~~~~~V~~v--~~~~---v~l~--------------dg~~~~A~~VI~A  133 (370)
T TIGR01789        77 RKLKTAYRSMTSTRFHEGLLQAFP--EG--VILGRKAVGL--DADG---VDLA--------------PGTRINARSVIDC  133 (370)
T ss_pred             hhcCCCceEEEHHHHHHHHHHhhc--cc--EEecCEEEEE--eCCE---EEEC--------------CCCEEEeeEEEEC
Confidence               112344566778788776653  23  6668888877  4443   3332              2368999999999


Q ss_pred             CCCCC
Q 020815          238 CGHDG  242 (321)
Q Consensus       238 tG~~~  242 (321)
                      +|..+
T Consensus       134 ~G~~s  138 (370)
T TIGR01789       134 RGFKP  138 (370)
T ss_pred             CCCCC
Confidence            99665

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK09897 hypothetical protein; Provisional

Probab=98.90  E-value=2.5e-08  Score=96.97  Aligned_cols=138  Identities=20%  Similarity=0.287  Sum_probs=81.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCc-cccCcccchhhhc----------cchHHHHHH-------
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGG-AWLGGQLFSAMVV----------RKPAHIFLD-------  151 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~-~~~~g~~~~~~~~----------~~~~~~~l~-------  151 (321)
                      .+|+|||||++|+++|.+|.+. ..++|+|+|++..+|.+ .|........++.          .....+|+.       
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            4799999999999999999874 14699999998777743 3433211110110          112334443       


Q ss_pred             -HcCCCcccC--CCeE-EEecH---HHHHHHHHHHHHcCCC--cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCC
Q 020815          152 -ELGIDYDEQ--DNYV-VIKHA---ALFTSTIMSKLLARPN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS  222 (321)
Q Consensus       152 -~~g~~~~~~--~~~~-~~~~~---~~~~~~l~~~~~~~~g--v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~  222 (321)
                       +++++....  ..|. ....+   ......+.+.+. ..|  ++++.+++|+++..+++.+. +.+..           
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~-~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~-----------  148 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQAR-QQKFAVAVYESCQVTDLQITNAGVM-LATNQ-----------  148 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHH-HcCCeEEEEECCEEEEEEEeCCEEE-EEECC-----------
Confidence             234433221  1222 12222   223333444443 344  78888999999988776533 33311           


Q ss_pred             CCCceEEEcCeEEEcCCCCCC
Q 020815          223 CMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       223 ~g~~~~i~a~~VI~AtG~~~~  243 (321)
                        .+..+.+|.||+|+|+..+
T Consensus       149 --gg~~i~aD~VVLAtGh~~p  167 (534)
T PRK09897        149 --DLPSETFDLAVIATGHVWP  167 (534)
T ss_pred             --CCeEEEcCEEEECCCCCCC
Confidence              1257899999999997543

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.89  E-value=4.3e-08  Score=93.46  Aligned_cols=41  Identities=24%  Similarity=0.255  Sum_probs=38.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      +|||||||+|.+|+.+|..|++. |+||+++|+++..||.++
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcccc
Confidence            69999999999999999999999 999999999998887653

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.88  E-value=1e-08  Score=94.08  Aligned_cols=138  Identities=17%  Similarity=0.251  Sum_probs=76.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccch--hhhccchHHHHHHHcCCCcccC-------C
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS--AMVVRKPAHIFLDELGIDYDEQ-------D  161 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~--~~~~~~~~~~~l~~~g~~~~~~-------~  161 (321)
                      -+|+|||||++|+++|+.|.+. |++|+|+|+...+.+....-+-..+  ..+..-...+++.+.+++....       +
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg   81 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG   81 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence            4899999999999999999999 9999999998766544110000011  0011111335666777765422       1


Q ss_pred             CeEE-E---ec--------HHHHHHHHHHHHHcCCCcEEEcCce----EEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          162 NYVV-I---KH--------AALFTSTIMSKLLARPNVKLFNAVA----AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       162 ~~~~-~---~~--------~~~~~~~l~~~~~~~~gv~i~~~~~----v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                      ..+. .   .+        .+.+.+.++..++...++++..+..    ..++..... -..|.+.              +
T Consensus        82 ~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~-~~~v~l~--------------~  146 (420)
T KOG2614|consen   82 KEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGK-KLVVHLS--------------D  146 (420)
T ss_pred             CeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccc-ccceecC--------------C
Confidence            1111 1   11        2333344555555556666665431    111111100 0011111              3


Q ss_pred             ceEEEcCeEEEcCCCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~  244 (321)
                      +.++++|.+|.|+|.++..
T Consensus       147 g~~~~~dlligCDGa~S~V  165 (420)
T KOG2614|consen  147 GTTVKGDLLIGCDGAYSKV  165 (420)
T ss_pred             CcEEEeeEEEEcCchHHHH
Confidence            4789999999999966543

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.87  E-value=4.9e-08  Score=90.50  Aligned_cols=88  Identities=18%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                      ......+.+.+. ..|++++++++|++++.+++.+.+|.+..              +.+|.+++||+|.|..+.   .++
T Consensus       173 ~~vvkni~~~l~-~~G~ei~f~t~VeDi~~~~~~~~~v~~~~--------------g~~i~~~~vvlA~Grsg~---dw~  234 (486)
T COG2509         173 PKVVKNIREYLE-SLGGEIRFNTEVEDIEIEDNEVLGVKLTK--------------GEEIEADYVVLAPGRSGR---DWF  234 (486)
T ss_pred             HHHHHHHHHHHH-hcCcEEEeeeEEEEEEecCCceEEEEccC--------------CcEEecCEEEEccCcchH---HHH
Confidence            456677778776 78999999999999999999888888753              379999999999996653   444


Q ss_pred             hhhhhc-CC-cccccCCceeecccccch
Q 020815          250 KRLKSI-GM-IEEVPGMKALDMNSAEDA  275 (321)
Q Consensus       250 ~~~~~~-g~-~~~~~~~~~~~~~~~~~~  275 (321)
                      ..+... |. +.+-|-..+.....+...
T Consensus       235 ~~l~~K~Gv~~~~~p~dIGVRvE~p~~v  262 (486)
T COG2509         235 EMLHKKLGVKMRAKPFDIGVRVEHPQSV  262 (486)
T ss_pred             HHHHHhcCcccccCCeeEEEEEecchHh
Confidence            444332 54 333344444444444433

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.87  E-value=4.6e-08  Score=91.84  Aligned_cols=59  Identities=12%  Similarity=0.046  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+.+.|.+.+. +.|++++.+++|.++..+++++.+|.+..            +....++||.||+|+|++
T Consensus       263 ~RL~~aL~~~~~-~~Gg~il~g~~V~~i~~~~~~v~~V~t~~------------g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFE-QLGGVMLPGDRVLRAEFEGNRVTRIHTRN------------HRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHH-HCCCEEEECcEEEEEEeeCCeEEEEEecC------------CccceEECCEEEEccCCC
Confidence            455677777776 67999999999999999999888887632            112579999999999977

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.86  E-value=3.9e-08  Score=98.82  Aligned_cols=39  Identities=36%  Similarity=0.710  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+|+|||+|++|+++|+.|++. |++|+|+|+...+||-
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG~  365 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIGGL  365 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCce
Confidence            57999999999999999999999 9999999998877764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.85  E-value=8.6e-09  Score=87.71  Aligned_cols=113  Identities=25%  Similarity=0.339  Sum_probs=70.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      ||||||||++|+.+|.+|++. +.+|+|+|+.+..   ++...++............                     ..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------~~   55 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPGT---PYNSGCIPSPLLVEIAPHR---------------------HE   55 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSHH---HHHHSHHHHHHHHHHHHHH---------------------HH
T ss_pred             CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccccc---ccccccccccccccccccc---------------------cc
Confidence            799999999999999999998 9999999886421   1111122221111110000                     00


Q ss_pred             HH--H--HHHHHHHcCCCcEEEcCceEEEEEEECCEEE----EEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          172 FT--S--TIMSKLLARPNVKLFNAVAAEDLIVKGGRVG----GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       172 ~~--~--~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~----gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +.  +  .+.+++. ..+++++.+.++.++....+.+.    .+...           ..++..++.+|+||+|+|..
T Consensus        56 ~~~~~~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~lviAtG~~  121 (201)
T PF07992_consen   56 FLPARLFKLVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVV-----------ETGDGREIKYDYLVIATGSR  121 (201)
T ss_dssp             HHHHHHGHHHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEE-----------ETTTEEEEEEEEEEEESTEE
T ss_pred             cccccccccccccc-cceEEEeeccccccccccccccccCcccceee-----------ccCCceEecCCeeeecCccc
Confidence            00  0  4444443 47899988899999988777541    11110           01245789999999999965

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.84  E-value=1.5e-08  Score=88.60  Aligned_cols=141  Identities=23%  Similarity=0.308  Sum_probs=91.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCC-----CCeEEEEeccCCCCCccccCcccchhhhccc----------hHHHHHH-H--
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNP-----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----------PAHIFLD-E--  152 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~-----G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~----------~~~~~l~-~--  152 (321)
                      ..|+|||||+.|+++||+|++.|     -..++|+|+....||.+-..+.+........          ...+.|. +  
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd   90 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD   90 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence            58999999999999999999972     2789999998888776644444333222211          1112221 1  


Q ss_pred             ----cCCC----------cccC------CC-------------------eEEEecHHHHHHHHHHHHHcCCCcEEEcCce
Q 020815          153 ----LGID----------YDEQ------DN-------------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVA  193 (321)
Q Consensus       153 ----~g~~----------~~~~------~~-------------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~  193 (321)
                          ||..          |+..      +.                   -.-..|...|.+.++..+.+..||+++.+ .
T Consensus        91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G-k  169 (380)
T KOG2852|consen   91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG-K  169 (380)
T ss_pred             CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe-e
Confidence                1110          0000      00                   00134678899999999998888999999 8


Q ss_pred             EEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          194 AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       194 v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      |.++..+.+++.++....     +.     +......++.+|++.|-+.
T Consensus       170 v~ev~dEk~r~n~v~~ae-----~~-----~ti~~~d~~~ivvsaGPWT  208 (380)
T KOG2852|consen  170 VKEVSDEKHRINSVPKAE-----AE-----DTIIKADVHKIVVSAGPWT  208 (380)
T ss_pred             eEEeecccccccccchhh-----hc-----CceEEeeeeEEEEecCCCc
Confidence            888875667776654421     11     1246678889999999654

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.84  E-value=4.8e-08  Score=96.38  Aligned_cols=89  Identities=21%  Similarity=0.329  Sum_probs=66.4

Q ss_pred             hHHHHHHHcCCCcccCCC--eE------------------EEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815          145 PAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (321)
Q Consensus       145 ~~~~~l~~~g~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~  199 (321)
                      ..++||+++|++|+...+  +.                  ...     .+..+...|.+++. +.||++++++.+++|+.
T Consensus        69 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~  147 (565)
T TIGR01816        69 EAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNL-KADTSFFNEYFALDLLM  147 (565)
T ss_pred             HHHHHHHhcCcccccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHH-hCCCEEEeccEEEEEEe
Confidence            356899999999975321  10                  000     23567788888886 67999999999999999


Q ss_pred             ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++++|.|+...+.         .++....|.||.||+||||++.
T Consensus       148 ~~g~v~Ga~~~~~---------~~g~~~~i~AkaVILATGG~~~  182 (565)
T TIGR01816       148 EDGECRGVIAYCL---------ETGEIHRFRAKAVVLATGGYGR  182 (565)
T ss_pred             eCCEEEEEEEEEc---------CCCcEEEEEeCeEEECCCCccc
Confidence            8999999987421         1234568999999999999873

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.82  E-value=9.3e-08  Score=89.39  Aligned_cols=64  Identities=16%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+.+.|.+.+.+..|++++++++|++|...++.-.-|.+.+      .   .+++..+++|++|++..||.+
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~------~---~~~~~~~v~a~FVfvGAGG~a  244 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKD------L---KTGEKREVRAKFVFVGAGGGA  244 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEe------c---CCCCeEEEECCEEEECCchHh
Confidence            567788888888777999999999999998765444444432      1   223558999999999999654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK02106 choline dehydrogenase; Validated

Probab=98.82  E-value=1.3e-08  Score=100.43  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=43.7

Q ss_pred             HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       177 ~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +..+.+..|++|+.++.|++|+.++++++||+....          .+....+.+|.||+|+|+...
T Consensus       207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~----------~~~~~~~~ak~VILaaGai~T  263 (560)
T PRK02106        207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERG----------GGRETARARREVILSAGAINS  263 (560)
T ss_pred             hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeC----------CcEEEEEeeeeEEEccCCCCC
Confidence            333444678999999999999999889999988531          112345789999999998764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.78  E-value=9.3e-08  Score=99.85  Aligned_cols=39  Identities=31%  Similarity=0.479  Sum_probs=36.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+|+|||||+|||++|+.|++. |++|+|+|+...+||.
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~GG~  468 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVGGV  468 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCcce
Confidence            57999999999999999999999 9999999998877764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.78  E-value=2.3e-08  Score=94.51  Aligned_cols=135  Identities=18%  Similarity=0.290  Sum_probs=87.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||+|..|+.+|..|++. |.+|+|||+.+.+....                                     ...
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  186 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATVMGRN-------------------------------------APP  186 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcchhhh-------------------------------------cCH
Confidence            4799999999999999999999 99999999975432100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.++.++++.. ++.+ .+.+.              ++.++.+|.||+|+|...+.     .
T Consensus       187 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~-~~~~-~v~l~--------------~g~~i~aD~Vv~a~G~~pn~-----~  244 (396)
T PRK09754        187 PVQRYLLQRHQ-QAGVRILLNNAIEHVVD-GEKV-ELTLQ--------------SGETLQADVVIYGIGISAND-----Q  244 (396)
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCeeEEEEc-CCEE-EEEEC--------------CCCEEECCEEEECCCCChhh-----H
Confidence            23344455554 67999999999998865 3332 23332              22579999999999954331     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+.+.++.  .  ..++.++.       +.+...|++|+.|+.+..
T Consensus       245 l~~~~gl~--~--~~gi~vd~-------~~~ts~~~IyA~GD~a~~  279 (396)
T PRK09754        245 LAREANLD--T--ANGIVIDE-------ACRTCDPAIFAGGDVAIT  279 (396)
T ss_pred             HHHhcCCC--c--CCCEEECC-------CCccCCCCEEEccceEee
Confidence            22233321  1  12232222       223457999999998843

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.78  E-value=1.2e-07  Score=77.79  Aligned_cols=131  Identities=23%  Similarity=0.326  Sum_probs=75.8

Q ss_pred             EEECCChHHHHHHHHhhcC----CCCeEEEEeccCCCC-CccccCcccchhhh----------cc---chHHHHHHHcCC
Q 020815           94 VVVGAGSAGLSCAYELSKN----PNIQIAIIEQSVSPG-GGAWLGGQLFSAMV----------VR---KPAHIFLDELGI  155 (321)
Q Consensus        94 vIIGgG~aGl~aA~~La~~----~G~~V~liEk~~~~g-g~~~~~g~~~~~~~----------~~---~~~~~~l~~~g~  155 (321)
                      +|||+|++|++++.+|.+.    ...+|+|+|+... | |..|........++          ..   ....+|+++.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~   79 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA   79 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence            5999999999999999876    2679999999654 5 55554432111111          01   235577776663


Q ss_pred             ---CcccCCCeEEEecHHHHHHHHHHHHHc--CCCcEEE-cCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE
Q 020815          156 ---DYDEQDNYVVIKHAALFTSTIMSKLLA--RPNVKLF-NAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (321)
Q Consensus       156 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~gv~i~-~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (321)
                         .......|.....-.+|.+..++.+.+  ..++++. ...+|++|...++.. .+.+.              ++..+
T Consensus        80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~-~v~~~--------------~g~~~  144 (156)
T PF13454_consen   80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY-RVVTA--------------DGQSI  144 (156)
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE-EEEEC--------------CCCEE
Confidence               111111222111123344444444332  2354442 244899988877653 33332              23678


Q ss_pred             EcCeEEEcCCC
Q 020815          230 EAKVVVSSCGH  240 (321)
Q Consensus       230 ~a~~VI~AtG~  240 (321)
                      .+|.||+|+|+
T Consensus       145 ~~d~VvLa~Gh  155 (156)
T PF13454_consen  145 RADAVVLATGH  155 (156)
T ss_pred             EeCEEEECCCC
Confidence            99999999994

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.77  E-value=4.4e-08  Score=99.94  Aligned_cols=123  Identities=17%  Similarity=0.208  Sum_probs=73.8

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCC---CCccccCcccchhhhccch-HHHHHHHcCCCcc-----c--
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP---GGGAWLGGQLFSAMVVRKP-AHIFLDELGIDYD-----E--  159 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~---gg~~~~~g~~~~~~~~~~~-~~~~l~~~g~~~~-----~--  159 (321)
                      +|+|||||++|+++|+.|++. +|++|+|+||+...   |.+..........+..... ..+.+......++     .  
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG   81 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence            699999999999999999985 37999999998753   2221111111111110111 1111111111111     0  


Q ss_pred             -----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815          160 -----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (321)
Q Consensus       160 -----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V  234 (321)
                           .+..+...+...+.+.|++++. +.|++++++++++++..                           ..+++|.|
T Consensus        82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~-~~GV~i~~g~~v~~i~~---------------------------~~~~~D~V  133 (765)
T PRK08255         82 RRIRSGGHGFAGIGRKRLLNILQARCE-ELGVKLVFETEVPDDQA---------------------------LAADADLV  133 (765)
T ss_pred             EEEEECCeeEecCCHHHHHHHHHHHHH-HcCCEEEeCCccCchhh---------------------------hhcCCCEE
Confidence                 0111223566888899998887 57999999987765410                           22578999


Q ss_pred             EEcCCCCC
Q 020815          235 VSSCGHDG  242 (321)
Q Consensus       235 I~AtG~~~  242 (321)
                      |.|+|..+
T Consensus       134 VgADG~~S  141 (765)
T PRK08255        134 IASDGLNS  141 (765)
T ss_pred             EEcCCCCH
Confidence            99999554

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.74  E-value=5.1e-08  Score=100.18  Aligned_cols=97  Identities=26%  Similarity=0.287  Sum_probs=66.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+|+|||||+||+++|+.|++. |++|+|+|+.+.+||....                     +++.     +.   -.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG~lr~---------------------~IP~-----~R---lp  588 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGGVVKN---------------------IIPQ-----FR---IP  588 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCcceee---------------------eccc-----cc---cc
Confidence            46999999999999999999999 9999999998877764321                     0110     00   01


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+......+.+. +.|++++.++.+ ++..++                        ......|+||+|||...
T Consensus       589 ~evL~~die~l~-~~GVe~~~gt~V-di~le~------------------------L~~~gYDaVILATGA~~  635 (1019)
T PRK09853        589 AELIQHDIEFVK-AHGVKFEFGCSP-DLTVEQ------------------------LKNEGYDYVVVAIGADK  635 (1019)
T ss_pred             HHHHHHHHHHHH-HcCCEEEeCcee-EEEhhh------------------------heeccCCEEEECcCCCC
Confidence            223334445555 579999999766 322111                        12345799999999864

>TIGR01810 betA choline dehydrogenase

Probab=98.74  E-value=3.5e-08  Score=96.83  Aligned_cols=58  Identities=19%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++..+.+..|++|+.++.|.+|+.++++++||++...      +    .....+.+|.||+|.|+..+
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~------~----~~~~~~~ak~VIlaAGai~S  256 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKG------G----RKEHTEANKEVILSAGAINS  256 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeC------C----cEEEEEEeeeEEEccCCCCC
Confidence            3444544679999999999999999899999987531      0    01234688999999998654

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.74  E-value=3e-07  Score=88.48  Aligned_cols=38  Identities=37%  Similarity=0.522  Sum_probs=35.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|+|||||++||++|+.|++. |++|+|+|+.+.+||.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG~~   38 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGGKV   38 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc
Confidence            489999999999999999999 99999999998888754

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.73  E-value=1.9e-07  Score=67.59  Aligned_cols=77  Identities=21%  Similarity=0.254  Sum_probs=60.2

Q ss_pred             EEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHHH
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALF  172 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  172 (321)
                      |+|||||..|+.+|..|++. |.+|+||++.+.+. ..                                     ....+
T Consensus         2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~-~~-------------------------------------~~~~~   42 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL-PG-------------------------------------FDPDA   42 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS-TT-------------------------------------SSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh-hh-------------------------------------cCHHH
Confidence            89999999999999999999 99999999987542 10                                     11334


Q ss_pred             HHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEe
Q 020815          173 TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN  210 (321)
Q Consensus       173 ~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~  210 (321)
                      ...+.+.+. +.|+++++++.+.++..+++.+. |++.
T Consensus        43 ~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~~~~-V~~~   78 (80)
T PF00070_consen   43 AKILEEYLR-KRGVEVHTNTKVKEIEKDGDGVE-VTLE   78 (80)
T ss_dssp             HHHHHHHHH-HTTEEEEESEEEEEEEEETTSEE-EEEE
T ss_pred             HHHHHHHHH-HCCCEEEeCCEEEEEEEeCCEEE-EEEe
Confidence            455556665 56999999999999998876555 6664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.72  E-value=2.6e-07  Score=86.05  Aligned_cols=110  Identities=18%  Similarity=0.149  Sum_probs=82.1

Q ss_pred             hHHHHHHHcCCCcccCCC---eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC
Q 020815          145 PAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (321)
Q Consensus       145 ~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~  221 (321)
                      +.++|++++|+++....+   |+....+..+.+.|...+. +.||+++++++|++|  +++. ..+.+..          
T Consensus        58 d~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~~~~-~~v~~~~----------  123 (376)
T TIGR03862        58 ALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLA-EQGVQFHTRHRWIGW--QGGT-LRFETPD----------  123 (376)
T ss_pred             HHHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEE--eCCc-EEEEECC----------
Confidence            456899999998765433   3345678899999998887 789999999999998  4433 3444421          


Q ss_pred             CCCCceEEEcCeEEEcCCCCCC--Ccc--hhhhhhhhcCC--cccccCCceeeccc
Q 020815          222 SCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNS  271 (321)
Q Consensus       222 ~~g~~~~i~a~~VI~AtG~~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~  271 (321)
                         ....++||.||+|||+.+.  .+.  ++++.+.++||  ++++|.++++....
T Consensus       124 ---~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i~~~~PaL~pl~~~~  176 (376)
T TIGR03862       124 ---GQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVSVAPFAPANCGFLVDW  176 (376)
T ss_pred             ---CceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCcccCCcCeeceEEccC
Confidence               1246999999999998653  222  56888888888  88899999887643

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.72  E-value=1.7e-07  Score=87.22  Aligned_cols=42  Identities=48%  Similarity=0.722  Sum_probs=39.2

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      +..||||||+|.+||++|+.|.+. |++|+|+|.++..||.++
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR~~   47 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCceeE
Confidence            368999999999999999999999 999999999999998775

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.72  E-value=1.8e-07  Score=87.92  Aligned_cols=136  Identities=15%  Similarity=0.219  Sum_probs=88.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||+|..|+.+|..|++. |.+|+++|+.+.+....                                     ...
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  183 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASLLASL-------------------------------------MPP  183 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcccchh-------------------------------------CCH
Confidence            4799999999999999999999 99999999875321100                                     001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .....+.+.+. +.|++++.++.++++..+++.+ .+...              ++.++.+|.||+|+|.....     .
T Consensus       184 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~D~vI~a~G~~p~~-----~  242 (377)
T PRK04965        184 EVSSRLQHRLT-EMGVHLLLKSQLQGLEKTDSGI-RATLD--------------SGRSIEVDAVIAAAGLRPNT-----A  242 (377)
T ss_pred             HHHHHHHHHHH-hCCCEEEECCeEEEEEccCCEE-EEEEc--------------CCcEEECCEEEECcCCCcch-----H
Confidence            23344455554 6799999999999987655432 23332              23679999999999955432     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+.+.++.    ...++..+.       +.+...|++|++|+++..
T Consensus       243 l~~~~gl~----~~~gi~vd~-------~l~ts~~~VyA~GD~a~~  277 (377)
T PRK04965        243 LARRAGLA----VNRGIVVDS-------YLQTSAPDIYALGDCAEI  277 (377)
T ss_pred             HHHHCCCC----cCCCEEECC-------CcccCCCCEEEeeecEeE
Confidence            22223321    112233322       123356999999998753

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.71  E-value=8.4e-08  Score=84.94  Aligned_cols=139  Identities=23%  Similarity=0.292  Sum_probs=85.7

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCC-------------CccccCcccchhhhccch--HHHHHHHc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPG-------------GGAWLGGQLFSAMVVRKP--AHIFLDEL  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~g-------------g~~~~~g~~~~~~~~~~~--~~~~l~~~  153 (321)
                      +||+||||||+.|++.|.+|.- +|+++|.|+|+....+             |-.+..+.+-.+++++..  ..+++++.
T Consensus        48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e~  127 (453)
T KOG2665|consen   48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDEK  127 (453)
T ss_pred             cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhhc
Confidence            6999999999999999999875 5799999999976543             111222233333444332  34566777


Q ss_pred             CCCcccCCCeEEE----------------------------------------------------ecHHHHHHHHHHHHH
Q 020815          154 GIDYDEQDNYVVI----------------------------------------------------KHAALFTSTIMSKLL  181 (321)
Q Consensus       154 g~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~l~~~~~  181 (321)
                      ++++...+.+.+.                                                    .+-..++..+-+...
T Consensus       128 ~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~  207 (453)
T KOG2665|consen  128 KIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFD  207 (453)
T ss_pred             CCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHH
Confidence            7776654333221                                                    111233444445543


Q ss_pred             cCCCcEEEcCceEEEEEEECCEE--EEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRV--GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v--~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                       ..|.+++.+.++..+...+..-  .-+++      .+      +..++++++.||-|+|-.
T Consensus       208 -~~gg~i~~n~~l~g~~~n~~~~~~Ypivv------~n------gk~ee~r~~~~vtc~gl~  256 (453)
T KOG2665|consen  208 -FMGGRIYTNFRLQGIAQNKEATFSYPIVV------LN------GKGEEKRTKNVVTCAGLQ  256 (453)
T ss_pred             -HhcccccccceeccchhccCCCCCCceEE------ec------CccceeEEeEEEEecccc
Confidence             5788888888888876544310  01111      11      235789999999999944

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.71  E-value=3.4e-08  Score=102.24  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=68.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+|+|||+|||||+||+.|++. |++|+|+|+...+||-..                     +|++-.        ...
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG~l~---------------------yGIP~~--------rlp  355 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGGVLR---------------------YGIPEF--------RLP  355 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCceEE---------------------ccCCCC--------cCh
Confidence            57999999999999999999999 999999999987777321                     233311        122


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .++.....+.+. +.|++++.++.+-.-         +.+.              +.....+|.||+|+|..
T Consensus       356 ~~vi~~~i~~l~-~~Gv~f~~n~~vG~d---------it~~--------------~l~~~~yDAV~LAtGA~  403 (944)
T PRK12779        356 NQLIDDVVEKIK-LLGGRFVKNFVVGKT---------ATLE--------------DLKAAGFWKIFVGTGAG  403 (944)
T ss_pred             HHHHHHHHHHHH-hhcCeEEEeEEeccE---------EeHH--------------HhccccCCEEEEeCCCC
Confidence            445555566665 579999988654211         1111              11234679999999985

>PLN02785 Protein HOTHEAD

Probab=98.69  E-value=1e-07  Score=94.18  Aligned_cols=33  Identities=36%  Similarity=0.560  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .||+||||+|.+|+.+|.+|++  +.+|+|||++.
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~   87 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG   87 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCC
Confidence            5999999999999999999998  48999999986

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.69  E-value=2.1e-07  Score=89.31  Aligned_cols=139  Identities=20%  Similarity=0.228  Sum_probs=89.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|.+. |.+|.++++.+.+...                          .           ...
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------~-----------~~~  191 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRILPD--------------------------S-----------FDK  191 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcccCch--------------------------h-----------cCH
Confidence            4899999999999999999998 9999999986432100                          0           013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+.+.+.+.+. +.|++++.+++++++.. ++++..+.+.               ..++.+|.||+|+|....     ..
T Consensus       192 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~-~~~~~~v~~~---------------~~~i~~d~vi~a~G~~p~-----~~  249 (444)
T PRK09564        192 EITDVMEEELR-ENGVELHLNEFVKSLIG-EDKVEGVVTD---------------KGEYEADVVIVATGVKPN-----TE  249 (444)
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCEEEEEec-CCcEEEEEeC---------------CCEEEcCEEEECcCCCcC-----HH
Confidence            34455555554 67999999999999853 4445444432               146999999999995433     12


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcC
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID  298 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~  298 (321)
                      .+.+.++.  +.....+.++.       ..+...|++|++|+++...+
T Consensus       250 ~l~~~gl~--~~~~g~i~vd~-------~~~t~~~~IyA~GD~~~~~~  288 (444)
T PRK09564        250 FLEDTGLK--TLKNGAIIVDE-------YGETSIENIYAAGDCATIYN  288 (444)
T ss_pred             HHHhcCcc--ccCCCCEEECC-------CcccCCCCEEEeeeEEEEEe
Confidence            23333331  11111122222       22345799999999986543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.66  E-value=6.2e-08  Score=99.91  Aligned_cols=40  Identities=38%  Similarity=0.669  Sum_probs=36.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .++|+|||||+||++||+.|++. |++|+|+|+.+.+||..
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG~l  576 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGGVV  576 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCcee
Confidence            57999999999999999999999 99999999998877753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.66  E-value=3.1e-08  Score=69.31  Aligned_cols=36  Identities=36%  Similarity=0.661  Sum_probs=32.6

Q ss_pred             EECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        95 IIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      |||||++|+++|+.|++. |.+|+|+|+++.+||.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCccee
Confidence            899999999999999999 999999999999988653

...

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.65  E-value=7.8e-07  Score=85.95  Aligned_cols=142  Identities=20%  Similarity=0.249  Sum_probs=87.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..+++. |.+|+|||+.+.+...                                      ...
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~il~~--------------------------------------~d~  215 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRICPG--------------------------------------TDT  215 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCCCCC--------------------------------------CCH
Confidence            4799999999999999999999 9999999987532100                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ++...+.+.+. +.|++++.++.++++..+++.+. +....      .   .+++..++.+|.||+|+|......  .+ 
T Consensus       216 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~------~---~~g~~~~i~~D~vi~a~G~~pn~~--~l-  281 (466)
T PRK06115        216 ETAKTLQKALT-KQGMKFKLGSKVTGATAGADGVS-LTLEP------A---AGGAAETLQADYVLVAIGRRPYTQ--GL-  281 (466)
T ss_pred             HHHHHHHHHHH-hcCCEEEECcEEEEEEEcCCeEE-EEEEE------c---CCCceeEEEeCEEEEccCCccccc--cC-
Confidence            23344555555 67999999999999976544332 22211      0   012346799999999999554321  00 


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.+.  .+ ...+...+       .+.+...|++|++||.+.
T Consensus       282 ~~~~~g~--~~-~~~G~~vd-------~~~~Ts~~~IyA~GD~~~  316 (466)
T PRK06115        282 GLETVGL--ET-DKRGMLAN-------DHHRTSVPGVWVIGDVTS  316 (466)
T ss_pred             Ccccccc--ee-CCCCEEEC-------CCeecCCCCEEEeeecCC
Confidence            0111111  00 01122221       233456799999999873

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.65  E-value=2.8e-07  Score=86.95  Aligned_cols=104  Identities=18%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc------------chHHHHHHHcCCC-c
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR------------KPAHIFLDELGID-Y  157 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~------------~~~~~~l~~~g~~-~  157 (321)
                      .||+|||||++|+.+|+.|++. |++|+|+|+.+..+........+ ..+...            .-..+.++.++.. +
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~~~~p~~~~~~~-~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~   78 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPEKLTPAHHTEDL-AELVCSNSLGAKALDRAAGLLKTEMRQLSSLII   78 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccccCchhhhhhh-hhhcccccccchhHHhccCcHHHHHhhcCeeee
Confidence            3899999999999999999999 99999999876543211110000 000000            0112333443321 1


Q ss_pred             cc------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          158 DE------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       158 ~~------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                      ..      ........+...|.+.+.+++.+.++++++.. .++++
T Consensus        79 ~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~-eV~dL  123 (433)
T TIGR00137        79 TAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIRE-EVTEI  123 (433)
T ss_pred             ehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEee-eeEEE
Confidence            10      01123344566778888888887788887733 55544

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.65  E-value=2e-07  Score=87.57  Aligned_cols=104  Identities=18%  Similarity=0.264  Sum_probs=62.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc------------hHHHHHHHcC-CCc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK------------PAHIFLDELG-IDY  157 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~------------~~~~~l~~~g-~~~  157 (321)
                      .||+|||||++|+.+|+.|++. |++|+|+|+.+........... +..+....            -..+.++.++ +.+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~~s~a~~~~~-~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~   80 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVKKTPAHHTDG-FAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIM   80 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccCcccccCcc-ccccccchhhhhhhHHhcCCchHHHHHHhcchhe
Confidence            4999999999999999999999 9999999987644321110000 01111000            0112333333 111


Q ss_pred             ccC------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          158 DEQ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       158 ~~~------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                      ...      ....+..+...+.+.|.+++.+.++++++ ..+|+++
T Consensus        81 ~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l  125 (436)
T PRK05335         81 EAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI  125 (436)
T ss_pred             ecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence            111      11123445566888889998888899998 4466665

>PLN02612 phytoene desaturase

Probab=98.65  E-value=7.4e-07  Score=88.04  Aligned_cols=40  Identities=35%  Similarity=0.420  Sum_probs=36.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ...+|+|||||++|+++|++|++. |++|+|+|++..+||.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~  131 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGK  131 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCc
Confidence            357999999999999999999999 9999999998877764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.64  E-value=1.6e-07  Score=81.56  Aligned_cols=38  Identities=34%  Similarity=0.650  Sum_probs=35.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|+|||+|++|++||+.|... |.+|+|+||+...||..
T Consensus         3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvGGRl   40 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVGGRL   40 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcccch
Confidence            799999999999999999999 99999999998887653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.64  E-value=6e-07  Score=87.80  Aligned_cols=154  Identities=21%  Similarity=0.293  Sum_probs=98.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||..|+.+|..|++. +.+|+|+|+.+.+..                                          
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l~~------------------------------------------  389 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADELKA------------------------------------------  389 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcCCh------------------------------------------
Confidence            4899999999999999999998 999999997642100                                          


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                        ...+.+.+.+..|++++.++.++++..+++++.+|.+.+.         .+++..++.+|.||+|+|......  ..+
T Consensus       390 --~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~---------~~~~~~~i~~D~vi~a~G~~Pn~~--~l~  456 (515)
T TIGR03140       390 --DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDR---------NSGEEKQLDLDGVFVQIGLVPNTE--WLK  456 (515)
T ss_pred             --hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEEEeCCcCCch--HHh
Confidence              0123344443469999999999999776677777766431         112346799999999999554321  111


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhcc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAR  319 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~  319 (321)
                         .. .  .+.....+..+.       +.+...|++|++|+.+..    |  ....-..+..|.+||.
T Consensus       457 ---~~-~--~~~~~G~I~vd~-------~~~Ts~p~IyAaGDv~~~----~--~~~~~~A~~~G~~Aa~  506 (515)
T TIGR03140       457 ---DA-V--ELNRRGEIVIDE-------RGRTSVPGIFAAGDVTTV----P--YKQIIIAMGEGAKAAL  506 (515)
T ss_pred             ---hh-c--ccCCCCeEEECC-------CCCCCCCCEEEcccccCC----c--cceEEEEEccHHHHHH
Confidence               11 1  011111122222       223467999999998732    2  1233467777777763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.62  E-value=5.2e-08  Score=93.95  Aligned_cols=41  Identities=39%  Similarity=0.678  Sum_probs=37.0

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ...||+|||||++|+++|++|++. |++|+|+|+...+||..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~l  179 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPGGVL  179 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCCee
Confidence            357999999999999999999999 99999999988777643

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.61  E-value=9.6e-07  Score=79.14  Aligned_cols=36  Identities=28%  Similarity=0.618  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHhhc---CCCCeEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~---~~G~~V~liEk~~~  125 (321)
                      ++||+|||||..|++.|+.|.+   ..|++|+++|++..
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            6899999999999999999976   23799999999764

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.61  E-value=9.5e-07  Score=85.21  Aligned_cols=100  Identities=15%  Similarity=0.213  Sum_probs=72.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||.+|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  211 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRILPG--------------------------------------EDA  211 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCCCCC--------------------------------------CCH
Confidence            4899999999999999999999 9999999997532100                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.++.++++..+++.+. +....            +...++.+|.||+|+|....
T Consensus       212 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------------g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       212 EVSKVVAKALK-KKGVKILTNTKVTAVEKNDDQVV-YENKG------------GETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEeC------------CcEEEEEeCEEEEecCCccc
Confidence            23344455554 57999999999999987766544 32211            12257999999999996554

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.61  E-value=5.3e-07  Score=80.41  Aligned_cols=58  Identities=17%  Similarity=0.164  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .+.+.|..+.. ..|.-++.+-+|.+....+++|+.+.+.+      +      ....++|+..|+|+|.+
T Consensus       259 Rl~~~L~~~f~-~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn------~------~diP~~a~~~VLAsGsf  316 (421)
T COG3075         259 RLHNQLQRQFE-QLGGLWMPGDEVKKATCKGGRVTEIYTRN------H------ADIPLRADFYVLASGSF  316 (421)
T ss_pred             hHHHHHHHHHH-HcCceEecCCceeeeeeeCCeEEEEEecc------c------ccCCCChhHeeeecccc
Confidence            34456666665 67899999999999999999999888742      1      33679999999999965

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=98.61  E-value=7.6e-07  Score=81.65  Aligned_cols=149  Identities=20%  Similarity=0.305  Sum_probs=88.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCC---CCeEEEEeccCCCCCccccCcccchhhhcc--chHHHHHHHcCCC--------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFLDELGID--------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~---G~~V~liEk~~~~gg~~~~~g~~~~~~~~~--~~~~~~l~~~g~~--------  156 (321)
                      .|||||||||++|++.|..|..+|   .+||+|+|....+.=..|.....+...+..  ...+..++.+|..        
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~  115 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY  115 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence            589999999999999999998753   579999998844322223333333322211  1233333333221        


Q ss_pred             ------------------cccCC---CeEEEecHHHHHHHHH--HHHHcCCCcEEEcCceEEEEEEE-------CCEEEE
Q 020815          157 ------------------YDEQD---NYVVIKHAALFTSTIM--SKLLARPNVKLFNAVAAEDLIVK-------GGRVGG  206 (321)
Q Consensus       157 ------------------~~~~~---~~~~~~~~~~~~~~l~--~~~~~~~gv~i~~~~~v~~l~~~-------~~~v~g  206 (321)
                                        |+...   +...+.....+...|+  ....+..++++.+...+.++.+.       ++...-
T Consensus       116 ~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~  195 (481)
T KOG3855|consen  116 QKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFH  195 (481)
T ss_pred             ccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEE
Confidence                              11110   1112223344445555  33334689999999998887652       233333


Q ss_pred             EEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCC
Q 020815          207 VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM  257 (321)
Q Consensus       207 v~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~  257 (321)
                      +...              ++..+.+|.+|.|+|     .++.+|++.++..
T Consensus       196 i~l~--------------dg~~~~~~LLigAdg-----~Ns~vR~~snid~  227 (481)
T KOG3855|consen  196 ITLT--------------DGINFATDLLIGADG-----FNSVVRKASNIDV  227 (481)
T ss_pred             EEec--------------cCceeeeceeecccc-----ccchhhhhcCCCc
Confidence            3332              236899999999999     5566777776643

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.61  E-value=5.7e-07  Score=88.97  Aligned_cols=39  Identities=38%  Similarity=0.606  Sum_probs=35.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+|+|||+|++|+++|+.|++. |++|+|+|+.+.+||.
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~GG~  175 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLGGM  175 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCe
Confidence            46899999999999999999999 9999999998877763

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.61  E-value=7.9e-07  Score=89.25  Aligned_cols=40  Identities=33%  Similarity=0.610  Sum_probs=36.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..+|+|||+|++|+++|+.|++. |++|+|+|+...+||..
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~GG~l  232 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAGGMM  232 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCcee
Confidence            47999999999999999999999 99999999988777643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.60  E-value=1.1e-06  Score=84.70  Aligned_cols=140  Identities=18%  Similarity=0.212  Sum_probs=88.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  213 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRILPG--------------------------------------EDK  213 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCcCCc--------------------------------------CCH
Confidence            3799999999999999999999 9999999997532100                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.+++++++..+++.+. +...+           .++..++.+|.||+|+|.......-   
T Consensus       214 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~-----------gg~~~~i~~D~vi~a~G~~p~~~~l---  277 (462)
T PRK06416        214 EISKLAERALK-KRGIKIKTGAKAKKVEQTDDGVT-VTLED-----------GGKEETLEADYVLVAVGRRPNTENL---  277 (462)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEEe-----------CCeeEEEEeCEEEEeeCCccCCCCC---
Confidence            33344445554 67999999999999987666433 32221           0122579999999999965442210   


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.++.  +. ...+..+.       +.+...|++|++|+++.
T Consensus       278 ~l~~~gl~--~~-~g~i~vd~-------~~~t~~~~VyAiGD~~~  312 (462)
T PRK06416        278 GLEELGVK--TD-RGFIEVDE-------QLRTNVPNIYAIGDIVG  312 (462)
T ss_pred             CchhcCCe--ec-CCEEeECC-------CCccCCCCEEEeeecCC
Confidence            01122220  11 11122221       23356799999999863

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.60  E-value=6.6e-07  Score=85.38  Aligned_cols=137  Identities=18%  Similarity=0.213  Sum_probs=91.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      .++|||||..|+..|..+++. |.+|+|||+.+.+-.                                      ....+
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp--------------------------------------~~D~e  215 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP--------------------------------------GEDPE  215 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC--------------------------------------cCCHH
Confidence            699999999999999999999 999999999864311                                      01145


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhh
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR  251 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~  251 (321)
                      +.+.+.+.+. +.+++++.+++++.+...++. ..+...+            ++..++++|.|++|+|.......-+   
T Consensus       216 i~~~~~~~l~-~~gv~i~~~~~v~~~~~~~~~-v~v~~~~------------g~~~~~~ad~vLvAiGR~Pn~~~Lg---  278 (454)
T COG1249         216 ISKELTKQLE-KGGVKILLNTKVTAVEKKDDG-VLVTLED------------GEGGTIEADAVLVAIGRKPNTDGLG---  278 (454)
T ss_pred             HHHHHHHHHH-hCCeEEEccceEEEEEecCCe-EEEEEec------------CCCCEEEeeEEEEccCCccCCCCCC---
Confidence            5666666776 478999999999999877665 3444422            1223799999999999554432111   


Q ss_pred             hhhcCCcccccCCceeecccccchhhcccccc-cccccccccch
Q 020815          252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREV-VPGMIVTGMEV  294 (321)
Q Consensus       252 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pg~~~~g~~~  294 (321)
                      +.+          .++.++......+...++. +|++|++||..
T Consensus       279 Le~----------~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~  312 (454)
T COG1249         279 LEN----------AGVELDDRGFIKVDDQMTTNVPGIYAIGDVI  312 (454)
T ss_pred             hhh----------cCceECCCCCEEeCCccccCCCCEEEeeccC
Confidence            111          1222222211222233343 79999999885

>TIGR02053 MerA mercuric reductase

Probab=98.60  E-value=1.2e-06  Score=84.56  Aligned_cols=101  Identities=14%  Similarity=0.233  Sum_probs=70.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  207 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRLLPR--------------------------------------EEP  207 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcCCCc--------------------------------------cCH
Confidence            4899999999999999999999 9999999987532100                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +.|++++.+++++++..+++.+ .+.+..           ++...++.+|.||+|+|....
T Consensus       208 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~~-~v~~~~-----------~~~~~~i~~D~ViiA~G~~p~  267 (463)
T TIGR02053       208 EISAAVEEALA-EEGIEVVTSAQVKAVSVRGGGK-IITVEK-----------PGGQGEVEADELLVATGRRPN  267 (463)
T ss_pred             HHHHHHHHHHH-HcCCEEEcCcEEEEEEEcCCEE-EEEEEe-----------CCCceEEEeCEEEEeECCCcC
Confidence            23334444454 6799999999999997655432 233211           012367999999999995543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.60  E-value=9.9e-07  Score=85.39  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=72.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||.+|+.+|..|++. |.+|+|||+.+.+...                                      ...
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~~~  221 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRILPT--------------------------------------EDA  221 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccCCc--------------------------------------CCH
Confidence            4899999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.+++++++..+ ++++..+...+            ++..++.+|.||+|+|....
T Consensus       222 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------------g~~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        222 ELSKEVARLLK-KLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------------GEEKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             HHHHHHHHHHH-hcCCEEEeCcEEEEEEEecCCCEEEEEEeC------------CceEEEEeCEEEEeeCCccC
Confidence            34445555554 679999999999998752 34443333211            23357999999999996654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.58  E-value=1.2e-07  Score=87.54  Aligned_cols=138  Identities=19%  Similarity=0.174  Sum_probs=72.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh-----------cc-----chHHHHHHHc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV-----------VR-----KPAHIFLDEL  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~-----------~~-----~~~~~~l~~~  153 (321)
                      .||+|+||.||++|+.|..|.+.+..+++.+|+.+..   .|..|.+.....           ..     .....+|.+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f---~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~   78 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF---SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH   78 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC---CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence            4899999999999999999998635999999987643   365554332110           00     0133455544


Q ss_pred             CCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC---EEEEEEEeecceecccCCCCCCCceEEE
Q 020815          154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNVME  230 (321)
Q Consensus       154 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~  230 (321)
                      |--+.....-.......+|.+++ +.+.++..-.+.++.+|++|..+++   ....|.+.+          .+|+..++.
T Consensus        79 ~rl~~f~~~~~~~p~R~ef~dYl-~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----------~~g~~~~~~  147 (341)
T PF13434_consen   79 GRLYEFYNRGYFFPSRREFNDYL-RWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----------SDGDGETYR  147 (341)
T ss_dssp             T-HHHHHHH--SS-BHHHHHHHH-HHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----------TTS-EEEEE
T ss_pred             CChhhhhhcCCCCCCHHHHHHHH-HHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----------cCCCeeEEE
Confidence            43211100000011234555554 4454456655888999999987643   244455422          223558999


Q ss_pred             cCeEEEcCCCC
Q 020815          231 AKVVVSSCGHD  241 (321)
Q Consensus       231 a~~VI~AtG~~  241 (321)
                      |+.||+|+|..
T Consensus       148 ar~vVla~G~~  158 (341)
T PF13434_consen  148 ARNVVLATGGQ  158 (341)
T ss_dssp             ESEEEE----E
T ss_pred             eCeEEECcCCC
Confidence            99999999933

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.58  E-value=4.7e-07  Score=85.74  Aligned_cols=37  Identities=35%  Similarity=0.682  Sum_probs=34.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGG  129 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~  129 (321)
                      .++|||||++||++|++|.+. +  ..++|+|+.+..||-
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~   40 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGL   40 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCce
Confidence            489999999999999999998 6  999999999888874

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.58  E-value=5.3e-07  Score=86.10  Aligned_cols=137  Identities=18%  Similarity=0.219  Sum_probs=86.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|.+|+.+|..|++. |.+|+++++.+.+....                                     ...
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~~~~~-------------------------------------~~~  179 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERILNKL-------------------------------------FDE  179 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcccCccc-------------------------------------cCH
Confidence            4899999999999999999998 99999999875321000                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.++.+.++..+ +.+  +...              ++.++.+|.||+|+|.....     .
T Consensus       180 ~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~-~~~--v~~~--------------~g~~i~~D~vi~a~G~~p~~-----~  236 (427)
T TIGR03385       180 EMNQIVEEELK-KHEINLRLNEEVDSIEGE-ERV--KVFT--------------SGGVYQADMVILATGIKPNS-----E  236 (427)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEecC-CCE--EEEc--------------CCCEEEeCEEEECCCccCCH-----H
Confidence            23344445554 679999999999998643 322  2222              12579999999999955432     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~  297 (321)
                      .+.+.+..  +.....+..+.       ..+...|++|+.|+.+...
T Consensus       237 ~l~~~gl~--~~~~G~i~vd~-------~~~t~~~~Vya~GD~~~~~  274 (427)
T TIGR03385       237 LAKDSGLK--LGETGAIWVNE-------KFQTSVPNIYAAGDVAESH  274 (427)
T ss_pred             HHHhcCcc--cCCCCCEEECC-------CcEeCCCCEEEeeeeEEee
Confidence            23333321  11111222222       1223579999999998543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06370 mercuric reductase; Validated

Probab=98.57  E-value=1.6e-06  Score=83.64  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=71.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~~~  212 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLLPR--------------------------------------EDE  212 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCCcc--------------------------------------cCH
Confidence            4899999999999999999999 9999999997542110                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++.+.+.+.+. +.|++++.++++.++..+++.+ .+....      .     ++..++.+|.||+|+|....
T Consensus       213 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~~-~v~~~~------~-----~~~~~i~~D~Vi~A~G~~pn  272 (463)
T PRK06370        213 DVAAAVREILE-REGIDVRLNAECIRVERDGDGI-AVGLDC------N-----GGAPEITGSHILVAVGRVPN  272 (463)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEE-EEEEEe------C-----CCceEEEeCEEEECcCCCcC
Confidence            23344455554 6899999999999997665533 222211      0     12357999999999995544

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.57  E-value=1e-06  Score=85.31  Aligned_cols=38  Identities=39%  Similarity=0.624  Sum_probs=35.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      .+||.||||||.||+..|-.|++.|..+|+|||++..+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            37999999999999999999999878999999998765

>PRK06116 glutathione reductase; Validated

Probab=98.57  E-value=1e-06  Score=84.76  Aligned_cols=99  Identities=14%  Similarity=0.203  Sum_probs=71.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..|++. |.+|+++++.+.+...                                      ...
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  208 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLRG--------------------------------------FDP  208 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCccc--------------------------------------cCH
Confidence            4899999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +.|++++.++.+.++..+++....+.+.              ++.++.+|.||+|+|....
T Consensus       209 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~g~~~v~~~--------------~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        209 DIRETLVEEME-KKGIRLHTNAVPKAVEKNADGSLTLTLE--------------DGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHHHHHHH-HCCcEEECCCEEEEEEEcCCceEEEEEc--------------CCcEEEeCEEEEeeCCCcC
Confidence            34445555554 6799999999999998754432223332              1257999999999995544

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.56  E-value=2e-06  Score=83.12  Aligned_cols=102  Identities=22%  Similarity=0.305  Sum_probs=71.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~d~  213 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRALPN--------------------------------------EDA  213 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------cCH
Confidence            4899999999999999999999 9999999986532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +.|++++.+++++++..+++.+. +....          .+++..++.+|.||+|+|....
T Consensus       214 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~~----------~~g~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        214 EVSKEIAKQYK-KLGVKILTGTKVESIDDNGSKVT-VTVSK----------KDGKAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCeEE-EEEEe----------cCCCeEEEEeCEEEECcCcccC
Confidence            33445555555 67999999999999976554332 22210          0123357999999999995544

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=5.8e-07  Score=80.72  Aligned_cols=98  Identities=19%  Similarity=0.236  Sum_probs=60.4

Q ss_pred             HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhh
Q 020815          174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLK  253 (321)
Q Consensus       174 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~  253 (321)
                      ..|.+++..-+|++++.+..-+++.-++++|+|....+      .   .+++...+.=.-|.+--|-...          
T Consensus       393 ~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d------r---~sge~~~l~LeGvFVqIGL~PN----------  453 (520)
T COG3634         393 AVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD------R---VSGEEHHLELEGVFVQIGLLPN----------  453 (520)
T ss_pred             HHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe------c---cCCceeEEEeeeeEEEEecccC----------
Confidence            56677787789999999999999988888999988754      1   1123345555555555552111          


Q ss_pred             hcCCcccccCCceeeccc-ccchhhcccccccccccccccchhh
Q 020815          254 SIGMIEEVPGMKALDMNS-AEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       254 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                          ++++.+.  ...+. .|..+..+....+||+|..|++...
T Consensus       454 ----T~WLkg~--vel~~rGEIivD~~g~TsvpGvFAAGD~T~~  491 (520)
T COG3634         454 ----TEWLKGA--VELNRRGEIIVDARGETNVPGVFAAGDCTTV  491 (520)
T ss_pred             ----hhHhhch--hhcCcCccEEEecCCCcCCCceeecCcccCC
Confidence                1112222  11222 3333334556789999999998643

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.55  E-value=2.2e-06  Score=82.91  Aligned_cols=37  Identities=43%  Similarity=0.560  Sum_probs=34.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      +|+|||||++|+++|+.|++. |++|+|+|++..+||.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~   37 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGGK   37 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCce
Confidence            489999999999999999999 9999999999888864

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.55  E-value=4.6e-07  Score=86.82  Aligned_cols=114  Identities=15%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      +|||||||++|+.+|..|.+. ++.+|+|||+.+...   +....++.          ++... +           ....
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~---~~~~~lp~----------~~~~~-~-----------~~~~   57 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS---FANCALPY----------YIGEV-V-----------EDRK   57 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc---cccCCcch----------hhcCc-c-----------CCHH
Confidence            699999999999999999874 368999999986432   11100000          00000 0           0001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .......+.+.++.|++++.+++|++|..++.++.   +..+         ..++..++.+|++|+|||...
T Consensus        58 ~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~---~~~~---------~~~~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         58 YALAYTPEKFYDRKQITVKTYHEVIAINDERQTVT---VLNR---------KTNEQFEESYDKLILSPGASA  117 (438)
T ss_pred             HcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEE---EEEC---------CCCcEEeeecCEEEECCCCCC
Confidence            11111112333356999999999999977766433   2110         001224578999999999765

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.55  E-value=1.6e-06  Score=83.71  Aligned_cols=98  Identities=14%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  216 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLLSF--------------------------------------LDD  216 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------CCH
Confidence            4899999999999999999999 9999999997532110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +.|++++.++.++++..+++.+. +...              ++.++.+|.||+|+|....
T Consensus       217 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        217 EISDALSYHLR-DSGVTIRHNEEVEKVEGGDDGVI-VHLK--------------SGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHHHHHHHHH-HcCCEEEECCEEEEEEEeCCeEE-EEEC--------------CCCEEEeCEEEEeecCCcc
Confidence            34455556665 57999999999999987665432 2221              1257999999999996544

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.55  E-value=1.8e-07  Score=87.28  Aligned_cols=82  Identities=24%  Similarity=0.457  Sum_probs=60.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-+++|||||++|++||+.|++. |++|.|+||.+.+||..                    .++.--|..++      -.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGrm--------------------ak~~k~FP~~d------cs  176 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGRM--------------------AKLNKTFPTND------CS  176 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcccccH--------------------HhhhccCCCcc------cc
Confidence            46899999999999999999999 99999999999998842                    22222222221      11


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~  198 (321)
                      --....++..+.+++++++++.++|+++.
T Consensus       177 ~C~LaP~m~~v~~hp~i~l~TyaeV~ev~  205 (622)
T COG1148         177 ICILAPKMVEVSNHPNIELITYAEVEEVS  205 (622)
T ss_pred             hhhccchhhhhccCCceeeeeeeeeeeec
Confidence            12233456666678999999999998864

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.54  E-value=4.1e-07  Score=89.27  Aligned_cols=60  Identities=22%  Similarity=0.329  Sum_probs=45.9

Q ss_pred             HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCC-CceEEEcCeEEEcCCCCCC
Q 020815          175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM-DPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g-~~~~i~a~~VI~AtG~~~~  243 (321)
                      .++..+.+..|++++.++.|..|+.+++++++|.+...     .    .+ ....+.++.||+|+|+.++
T Consensus       207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~-----~----~~~~~~~~a~~~viL~AGai~S  267 (542)
T COG2303         207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIG-----D----GGTIETAVAAREVVLAAGAINS  267 (542)
T ss_pred             hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeC-----C----CCceEEEecCceEEEeccccCC
Confidence            34455566889999999999999999999999988531     0    01 1355678899999998774

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.54  E-value=1.6e-06  Score=83.52  Aligned_cols=99  Identities=20%  Similarity=0.202  Sum_probs=70.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||||.+|+.+|..|.+. |.+|+|+|+.+.+...                                      ...
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ll~~--------------------------------------~d~  211 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQLLPG--------------------------------------EDE  211 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCcc--------------------------------------ccH
Confidence            3799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++.+.+.+.+. +.|++++.+++++++..+++.+. +.. .            ++..++.+|.||+|+|....
T Consensus       212 e~~~~l~~~L~-~~GI~i~~~~~V~~i~~~~~~v~-~~~-~------------g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        212 DIAHILREKLE-NDGVKIFTGAALKGLNSYKKQAL-FEY-E------------GSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEEcCCEEE-EEE-C------------CceEEEEeCEEEEecCCccC
Confidence            34445555565 57999999999999875544321 111 1            12257999999999996544

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.53  E-value=1.8e-07  Score=90.22  Aligned_cols=97  Identities=22%  Similarity=0.278  Sum_probs=65.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+|+|||||++|+++|+.|++. |++|+|+|+.+.+||...                     ++++..        ...
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~gG~l~---------------------~gip~~--------~~~  189 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAGGLLR---------------------YGIPEF--------RLP  189 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCcEee---------------------ccCCCc--------cCC
Confidence            57999999999999999999999 999999999887765321                     111100        011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+...+.+.+. +.|++++.++.+...         +...               ...+.+|.||+|||..
T Consensus       190 ~~~~~~~~~~l~-~~gv~~~~~~~v~~~---------v~~~---------------~~~~~~d~vvlAtGa~  236 (457)
T PRK11749        190 KDIVDREVERLL-KLGVEIRTNTEVGRD---------ITLD---------------ELRAGYDAVFIGTGAG  236 (457)
T ss_pred             HHHHHHHHHHHH-HcCCEEEeCCEECCc---------cCHH---------------HHHhhCCEEEEccCCC
Confidence            344455555565 578999988765210         1110               0226789999999975

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.53  E-value=4.2e-07  Score=84.12  Aligned_cols=41  Identities=34%  Similarity=0.578  Sum_probs=36.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+||++|||+|.-||.+|..|++. |.+|+++|++...||..
T Consensus        13 ~~ydavvig~GhnGL~aaayl~r~-g~~V~vlerrhv~gGaa   53 (561)
T KOG4254|consen   13 PEYDAVVIGGGHNGLTAAAYLARY-GQSVAVLERRHVIGGAA   53 (561)
T ss_pred             cccceEEecCCccchhHHHHHHhc-CcceEEEEEeeecCcce
Confidence            379999999999999999999999 99999999986666554

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.53  E-value=1.5e-06  Score=84.97  Aligned_cols=153  Identities=20%  Similarity=0.242  Sum_probs=96.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||..|+.+|..|+.. +.+|+|+++.+....                                          
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l~~------------------------------------------  388 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPELKA------------------------------------------  388 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccccc------------------------------------------
Confidence            4899999999999999999998 999999998743200                                          


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                        ...+.+.+.+..|++++.++.++++..+++++.++...+.         .+++..++.+|.|++|.|......  +  
T Consensus       389 --~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~---------~~g~~~~i~~D~v~~~~G~~p~~~--~--  453 (517)
T PRK15317        389 --DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDR---------TTGEEHHLELEGVFVQIGLVPNTE--W--  453 (517)
T ss_pred             --cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEEC---------CCCcEEEEEcCEEEEeECCccCch--H--
Confidence              0122334443479999999999999877677777766431         112346799999999999654321  1  


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA  318 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~  318 (321)
                       +... . . +.....+..+       .+.+...|++|++|+.+....      ...-..+..|.+||
T Consensus       454 -l~~~-v-~-~~~~g~i~vd-------~~l~Ts~p~IyAaGDv~~~~~------k~~~~A~~eG~~Aa  504 (517)
T PRK15317        454 -LKGT-V-E-LNRRGEIIVD-------ARGATSVPGVFAAGDCTTVPY------KQIIIAMGEGAKAA  504 (517)
T ss_pred             -Hhhh-e-e-eCCCCcEEEC-------cCCCCCCCCEEECccccCCCC------CEEEEhhhhHHHHH
Confidence             1111 0 0 0000111111       123456799999999874321      11224445566655

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.52  E-value=1.3e-07  Score=90.82  Aligned_cols=40  Identities=43%  Similarity=0.737  Sum_probs=36.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+||+|||+|++|+++|+.|++. |++|+|+|+...+||.
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~GG~  171 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKPGGV  171 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcE
Confidence            357999999999999999999999 9999999998777764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.51  E-value=2.8e-06  Score=81.71  Aligned_cols=100  Identities=11%  Similarity=0.069  Sum_probs=71.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+..|..|++. |.+|+|||+.+.+...                                      ...
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~d~  207 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERVLRS--------------------------------------FDS  207 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCcc--------------------------------------cCH
Confidence            4899999999999999999999 9999999987532110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.++.++++..+++....+...+             ....+.+|.||+|+|...+
T Consensus       208 ~~~~~~~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~v~~~~-------------g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       208 MISETITEEYE-KEGINVHKLSKPVKVEKTVEGKLVIHFED-------------GKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             HHHHHHHHHHH-HcCCEEEcCCEEEEEEEeCCceEEEEECC-------------CcEEEEcCEEEEeeCCCcC
Confidence            33445555554 67999999999999976543222233311             1156999999999995544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.51  E-value=7.7e-07  Score=85.40  Aligned_cols=113  Identities=10%  Similarity=0.146  Sum_probs=66.9

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      +|||||||++|+++|..|++. ++.+|+|||+.+..+   |...                   ++++....   ......
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~---~~~~-------------------~~~~~~~~---~~~~~~   56 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS---FGAC-------------------GLPYFVGG---FFDDPN   56 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce---eecC-------------------CCceEecc---ccCCHH
Confidence            599999999999999999985 246999999986532   1100                   00000000   000111


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++.....+.+. +.|++++.+++|+.+..+++.+.   +.+      ..   ++....+.+|++|+|||...
T Consensus        57 ~~~~~~~~~~~-~~gv~~~~~~~V~~id~~~~~v~---~~~------~~---~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         57 TMIARTPEEFI-KSGIDVKTEHEVVKVDAKNKTIT---VKN------LK---TGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             HhhcCCHHHHH-HCCCeEEecCEEEEEECCCCEEE---EEE------CC---CCCEEEecCCEEEECCCCCC
Confidence            22222233343 56999999999999977665432   211      00   01112344999999999764

>PLN02507 glutathione reductase

Probab=98.51  E-value=2.7e-06  Score=82.83  Aligned_cols=138  Identities=17%  Similarity=0.248  Sum_probs=87.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||+|..|+..|..|++. |.+|+|+++.+.+-..                                      ...
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~  244 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELPLRG--------------------------------------FDD  244 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCcCcc--------------------------------------cCH
Confidence            3799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ++...+.+.+. +.|++++.++.++++..+++.+. +...              ++.++.+|.||+|+|.......-+  
T Consensus       245 ~~~~~l~~~l~-~~GI~i~~~~~V~~i~~~~~~~~-v~~~--------------~g~~i~~D~vl~a~G~~pn~~~l~--  306 (499)
T PLN02507        245 EMRAVVARNLE-GRGINLHPRTNLTQLTKTEGGIK-VITD--------------HGEEFVADVVLFATGRAPNTKRLN--  306 (499)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCeEE-EEEC--------------CCcEEEcCEEEEeecCCCCCCCCC--
Confidence            33444455554 67999999999999986655432 2221              225799999999999655432100  


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                       +.+.++  .+.....+.++       .+.+...|++|++||.+.
T Consensus       307 -l~~~gl--~~~~~G~I~Vd-------~~~~Ts~p~IyAiGDv~~  341 (499)
T PLN02507        307 -LEAVGV--ELDKAGAVKVD-------EYSRTNIPSIWAIGDVTN  341 (499)
T ss_pred             -chhhCc--EECCCCcEecC-------CCCcCCCCCEEEeeEcCC
Confidence             111111  01011112222       233456899999999874

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.50  E-value=1.7e-07  Score=95.66  Aligned_cols=40  Identities=35%  Similarity=0.537  Sum_probs=36.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ...||+|||||+||+++|+.|++. |++|+|+|+...+||.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~  469 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIGGV  469 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCe
Confidence            357999999999999999999999 9999999998777764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.50  E-value=2.2e-06  Score=82.14  Aligned_cols=97  Identities=12%  Similarity=0.187  Sum_probs=69.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|.+|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  198 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTILPR--------------------------------------EEP  198 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccCCC--------------------------------------CCH
Confidence            3799999999999999999998 9999999997542110                                      001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.+++++++..+++.+. +..               +..++.+|.||+|+|....
T Consensus       199 ~~~~~~~~~l~-~~GI~i~~~~~V~~i~~~~~~v~-v~~---------------~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        199 SVAALAKQYME-EDGITFLLNAHTTEVKNDGDQVL-VVT---------------EDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHHHHHHH-HcCCEEEcCCEEEEEEecCCEEE-EEE---------------CCeEEEcCEEEEeeCCCCC
Confidence            22333344444 67999999999999976555432 211               1257999999999996554

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.49  E-value=2.5e-07  Score=89.45  Aligned_cols=39  Identities=33%  Similarity=0.564  Sum_probs=35.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      .++|+|||+|++|+++|..|++. |++|+|+|+.+.+||.
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~GG~  181 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIGGL  181 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCce
Confidence            57999999999999999999999 9999999998877663

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.48  E-value=3.6e-06  Score=80.92  Aligned_cols=98  Identities=11%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..+++. |.+|+|+|+.+.+...                                      ...
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~  207 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELILRG--------------------------------------FDD  207 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCCCcc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +.|++++.++.+.++..+++.+ .+...              ++.++.+|.||+|+|....
T Consensus       208 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       208 DMRALLARNME-GRGIRIHPQTSLTSITKTDDGL-KVTLS--------------HGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeE-EEEEc--------------CCcEeecCEEEEeeCCCcC
Confidence            33344455554 6799999999999997655432 22221              1257999999999995543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.48  E-value=2.6e-06  Score=87.60  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=88.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+.+|..|++. |.+|.|||..+.+-..                      .    +           ..
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~ll~~----------------------~----l-----------d~  187 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPMLMAE----------------------Q----L-----------DQ  187 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccchhh----------------------h----c-----------CH
Confidence            3799999999999999999999 9999999987531000                      0    0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                      .....+.+.+. +.||+++.++.++++..++ +.+..+...              ++.++.+|.||+|+|-..+..    
T Consensus       188 ~~~~~l~~~L~-~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--------------dG~~i~~D~Vv~A~G~rPn~~----  248 (847)
T PRK14989        188 MGGEQLRRKIE-SMGVRVHTSKNTLEIVQEGVEARKTMRFA--------------DGSELEVDFIVFSTGIRPQDK----  248 (847)
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCeEEEEEecCCCceEEEEEC--------------CCCEEEcCEEEECCCcccCch----
Confidence            23344445554 6899999999999987543 334444442              236799999999999554321    


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                       .+.+.|+.  +....++.++.       +.+...|++|+.|+++..
T Consensus       249 -L~~~~Gl~--~~~~G~I~VD~-------~l~Ts~p~IYAiGD~a~~  285 (847)
T PRK14989        249 -LATQCGLA--VAPRGGIVIND-------SCQTSDPDIYAIGECASW  285 (847)
T ss_pred             -HHhhcCcc--CCCCCcEEECC-------CCcCCCCCEEEeecceeE
Confidence             22233321  11112233332       223457999999998754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.47  E-value=1.6e-06  Score=78.27  Aligned_cols=152  Identities=17%  Similarity=0.226  Sum_probs=93.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||+|..|+.+|..|++. +.+|.++++.+...                                        .  
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~~----------------------------------------~--  178 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKFR----------------------------------------A--  178 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcccC----------------------------------------c--
Confidence            4899999999999999999998 99999999864210                                        0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                        ...+.+.+.+..|++++.++.+.++..++ ++..+...+      .   .+++..++.+|.||+|+|...+.  ..++
T Consensus       179 --~~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~------~---~~g~~~~i~~D~vi~a~G~~~~~--~~l~  244 (300)
T TIGR01292       179 --EKILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKN------T---VTGEEEELKVDGVFIAIGHEPNT--ELLK  244 (300)
T ss_pred             --CHHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEe------c---CCCceEEEEccEEEEeeCCCCCh--HHHH
Confidence              01233444433499999999999987543 555555421      0   11244789999999999954432  1222


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA  318 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~  318 (321)
                      ..  ..    ......+..+.       +.+...|++|+.|+.+..   .+   ......+..|..||
T Consensus       245 ~~--~~----~~~~g~i~v~~-------~~~t~~~~vya~GD~~~~---~~---~~~~~A~~~g~~aa  293 (300)
T TIGR01292       245 GL--LE----LDEGGYIVTDE-------GMRTSVPGVFAAGDVRDK---GY---RQAVTAAGDGCIAA  293 (300)
T ss_pred             Hh--he----ecCCCcEEECC-------CCccCCCCEEEeecccCc---ch---hhhhhhhhhHHHHH
Confidence            21  11    11111122221       123467999999998853   11   12334555666655

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK14694 putative mercuric reductase; Provisional

Probab=98.46  E-value=3.4e-06  Score=81.60  Aligned_cols=135  Identities=16%  Similarity=0.253  Sum_probs=85.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+|+++......                                       ...
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~~l~~---------------------------------------~~~  218 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARL-GSRVTVLARSRVLSQ---------------------------------------EDP  218 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCC---------------------------------------CCH
Confidence            4899999999999999999999 999999987421100                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.++.+.++..+++.+. +...               ..++.+|.||+|+|..+....-   
T Consensus       219 ~~~~~l~~~l~-~~GI~v~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn~~~l---  278 (468)
T PRK14694        219 AVGEAIEAAFR-REGIEVLKQTQASEVDYNGREFI-LETN---------------AGTLRAEQLLVATGRTPNTENL---  278 (468)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEC---------------CCEEEeCEEEEccCCCCCcCCC---
Confidence            33444555554 67999999999999876555322 3221               1469999999999966543210   


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.+..  . ....+..+.       +.+...|++|+.||.+.
T Consensus       279 ~l~~~g~~--~-~~G~i~vd~-------~~~Ts~~~IyA~GD~~~  313 (468)
T PRK14694        279 NLESIGVE--T-ERGAIRIDE-------HLQTTVSGIYAAGDCTD  313 (468)
T ss_pred             CchhcCcc--c-CCCeEeeCC-------CcccCCCCEEEEeecCC
Confidence            11222221  0 111122222       23346799999999863

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.45  E-value=4.2e-06  Score=80.91  Aligned_cols=138  Identities=18%  Similarity=0.271  Sum_probs=87.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+|||+.+.+...                                      ...
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  218 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLPG--------------------------------------EDA  218 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCCC--------------------------------------CCH
Confidence            3799999999999999999999 9999999987532110                                      001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.+++++++..+++.+. +...              ++.++.+|.||+|+|........   
T Consensus       219 ~~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~--------------~g~~l~~D~vl~a~G~~pn~~~l---  279 (466)
T PRK07845        219 DAAEVLEEVFA-RRGMTVLKRSRAESVERTGDGVV-VTLT--------------DGRTVEGSHALMAVGSVPNTAGL---  279 (466)
T ss_pred             HHHHHHHHHHH-HCCcEEEcCCEEEEEEEeCCEEE-EEEC--------------CCcEEEecEEEEeecCCcCCCCC---
Confidence            23334444454 67999999999999976665432 3221              12579999999999965543210   


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.++.  +.....+.++       .+.+...|++|+.|+.+.
T Consensus       280 ~l~~~gl~--~~~~G~i~Vd-------~~~~Ts~~~IyA~GD~~~  315 (466)
T PRK07845        280 GLEEAGVE--LTPSGHITVD-------RVSRTSVPGIYAAGDCTG  315 (466)
T ss_pred             CchhhCce--ECCCCcEeEC-------CCcccCCCCEEEEeeccC
Confidence            01122220  0001112222       123446799999998873

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.45  E-value=3.9e-07  Score=87.97  Aligned_cols=98  Identities=19%  Similarity=0.245  Sum_probs=66.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+|+|||+|++|+++|..|++. |.+|+|+|+.+.+||-..                     +|++...        ..
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~gG~l~---------------------~gip~~~--------~~  190 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIGGLLT---------------------FGIPSFK--------LD  190 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCceee---------------------ecCcccc--------CC
Confidence            57999999999999999999999 999999999987776321                     1222110        11


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .++.....+.+. +.|++++.++.+..-         +...               .....+|.||+|+|...
T Consensus       191 ~~~~~~~~~~~~-~~Gv~~~~~~~v~~~---------~~~~---------------~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       191 KAVLSRRREIFT-AMGIEFHLNCEVGRD---------ISLD---------------DLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             HHHHHHHHHHHH-HCCCEEECCCEeCCc---------cCHH---------------HHHhcCCEEEEEeCCCC
Confidence            234444455555 679999999766221         0000               02246899999999865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14727 putative mercuric reductase; Provisional

Probab=98.45  E-value=4.4e-06  Score=81.02  Aligned_cols=136  Identities=14%  Similarity=0.188  Sum_probs=85.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..|++. |.+|+|+++......                                       ...
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~l~~---------------------------------------~d~  228 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARL-GSRVTILARSTLLFR---------------------------------------EDP  228 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCCCc---------------------------------------chH
Confidence            4799999999999999999999 999999987421100                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.+++++++..+++.+. +...               ..++.+|.||+|+|.......-   
T Consensus       229 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~~~~-v~~~---------------~g~i~aD~VlvA~G~~pn~~~l---  288 (479)
T PRK14727        229 LLGETLTACFE-KEGIEVLNNTQASLVEHDDNGFV-LTTG---------------HGELRAEKLLISTGRHANTHDL---  288 (479)
T ss_pred             HHHHHHHHHHH-hCCCEEEcCcEEEEEEEeCCEEE-EEEc---------------CCeEEeCEEEEccCCCCCccCC---
Confidence            23345555554 67999999999999976665332 2221               1468999999999966543200   


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.++  .+.....+.++.       +.+...|++|+.||.+.
T Consensus       289 ~l~~~g~--~~~~~G~i~Vd~-------~~~Ts~~~IyA~GD~~~  324 (479)
T PRK14727        289 NLEAVGV--TTDTSGAIVVNP-------AMETSAPDIYAAGDCSD  324 (479)
T ss_pred             CchhhCc--eecCCCCEEECC-------CeecCCCCEEEeeecCC
Confidence            0111121  011111122222       23446799999999873

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.44  E-value=5.1e-06  Score=80.51  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=72.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  224 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAFLAA--------------------------------------ADE  224 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCccCCc--------------------------------------CCH
Confidence            4899999999999999999999 9999999997532100                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +.|++++.+++++++..+++.+. +...+          .+++..++.+|.||+|+|....
T Consensus       225 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~----------~~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        225 QVAKEAAKAFT-KQGLDIHLGVKIGEIKTGGKGVS-VAYTD----------ADGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHHHHHHHHH-HcCcEEEeCcEEEEEEEcCCEEE-EEEEe----------CCCceeEEEcCEEEEccCCccC
Confidence            34445555555 57999999999999987665442 33221          0123357999999999995554

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.44  E-value=2e-06  Score=88.11  Aligned_cols=136  Identities=14%  Similarity=0.183  Sum_probs=88.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+.+|..|++. |.+|.|+|+.+.+-..                      .    +           ..
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~ll~~----------------------~----l-----------d~  182 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGLMAK----------------------Q----L-----------DQ  182 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCchhhh----------------------h----c-----------CH
Confidence            4799999999999999999999 9999999987531000                      0    0           01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .....+.+.+. +.||+++.++.++++.. ++++.+|...+              +.++.+|.||+|+|-.....     
T Consensus       183 ~~~~~l~~~l~-~~GV~v~~~~~v~~i~~-~~~~~~v~~~d--------------G~~i~~D~Vi~a~G~~Pn~~-----  241 (785)
T TIGR02374       183 TAGRLLQRELE-QKGLTFLLEKDTVEIVG-ATKADRIRFKD--------------GSSLEADLIVMAAGIRPNDE-----  241 (785)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCceEEEEc-CCceEEEEECC--------------CCEEEcCEEEECCCCCcCcH-----
Confidence            22334444444 67999999999988864 34555666532              25799999999999554321     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+.+.++.  +  ..++.++.       +.+...|++|+.|+.+..
T Consensus       242 la~~~gl~--~--~ggI~Vd~-------~~~Ts~p~IyA~GD~a~~  276 (785)
T TIGR02374       242 LAVSAGIK--V--NRGIIVND-------SMQTSDPDIYAVGECAEH  276 (785)
T ss_pred             HHHhcCCc--c--CCCEEECC-------CcccCCCCEEEeeeccee
Confidence            12222321  1  12333332       123457999999988753

>PLN02487 zeta-carotene desaturase

Probab=98.43  E-value=7.4e-06  Score=80.58  Aligned_cols=38  Identities=37%  Similarity=0.513  Sum_probs=35.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      .+|+|||||++|+++|+.|++. |++|+|+|+.+.+||.
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG~  113 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGGK  113 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCCc
Confidence            5999999999999999999999 9999999999888763

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.43  E-value=5e-06  Score=80.48  Aligned_cols=101  Identities=10%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||||..|+..|..|++. |.+|+|||+.+.+...                                      ...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il~~--------------------------------------~d~  215 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVIPA--------------------------------------ADK  215 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCCc--------------------------------------CCH
Confidence            3899999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++.+.+.+.+. +. ++++.++.++.+..+++.+. +...+      .    +++..++.+|.||+|+|..++
T Consensus       216 ~~~~~~~~~l~-~~-v~i~~~~~v~~i~~~~~~~~-v~~~~------~----~~~~~~i~~D~vi~a~G~~pn  275 (471)
T PRK06467        216 DIVKVFTKRIK-KQ-FNIMLETKVTAVEAKEDGIY-VTMEG------K----KAPAEPQRYDAVLVAVGRVPN  275 (471)
T ss_pred             HHHHHHHHHHh-hc-eEEEcCCEEEEEEEcCCEEE-EEEEe------C----CCcceEEEeCEEEEeeccccc
Confidence            34445555554 44 99999999999876655432 32211      0    112357999999999996544

>PRK13748 putative mercuric reductase; Provisional

Probab=98.43  E-value=3.9e-06  Score=82.98  Aligned_cols=136  Identities=14%  Similarity=0.201  Sum_probs=85.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+||++......                                       ...
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~---------------------------------------~d~  310 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARL-GSKVTILARSTLFFR---------------------------------------EDP  310 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCccccc---------------------------------------cCH
Confidence            4799999999999999999999 999999997521100                                       002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ++...+.+.+. +.|++++.++.++++..+++.+. +...               ..++.+|.||+|+|.......-   
T Consensus       311 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn~~~l---  370 (561)
T PRK13748        311 AIGEAVTAAFR-AEGIEVLEHTQASQVAHVDGEFV-LTTG---------------HGELRADKLLVATGRAPNTRSL---  370 (561)
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEE-EEec---------------CCeEEeCEEEEccCCCcCCCCc---
Confidence            23344555554 67999999999999876665432 2221               1369999999999955443200   


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.++  .+.....+.++.       +.+...|++|++|+.+.
T Consensus       371 ~l~~~g~--~~~~~g~i~vd~-------~~~Ts~~~IyA~GD~~~  406 (561)
T PRK13748        371 ALDAAGV--TVNAQGAIVIDQ-------GMRTSVPHIYAAGDCTD  406 (561)
T ss_pred             CchhcCc--eECCCCCEeECC-------CcccCCCCEEEeeecCC
Confidence            0111221  011111122222       23446799999999873

>PRK07846 mycothione reductase; Reviewed

Probab=98.43  E-value=4.7e-06  Score=80.16  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=84.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||||..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll~~--------------------------------------~d~  207 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLLRH--------------------------------------LDD  207 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            4899999999999999999999 9999999987532100                                      001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ++.+.+. ++. +.+++++.+++++++..+++.+. +...              ++.++.+|.||+|+|.......  + 
T Consensus       208 ~~~~~l~-~l~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn~~~--l-  267 (451)
T PRK07846        208 DISERFT-ELA-SKRWDVRLGRNVVGVSQDGSGVT-LRLD--------------DGSTVEADVLLVATGRVPNGDL--L-  267 (451)
T ss_pred             HHHHHHH-HHH-hcCeEEEeCCEEEEEEEcCCEEE-EEEC--------------CCcEeecCEEEEEECCccCccc--c-
Confidence            2223332 333 35799999999999876655332 2221              2257999999999996554321  0 


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.++  .+.....+.++       .+.+...|++|++|+.+.
T Consensus       268 ~~~~~gl--~~~~~G~i~Vd-------~~~~Ts~p~IyA~GD~~~  303 (451)
T PRK07846        268 DAAAAGV--DVDEDGRVVVD-------EYQRTSAEGVFALGDVSS  303 (451)
T ss_pred             CchhcCc--eECCCCcEeEC-------CCcccCCCCEEEEeecCC
Confidence            0111111  01001112222       233456899999999863

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.41  E-value=1.5e-06  Score=82.01  Aligned_cols=100  Identities=27%  Similarity=0.302  Sum_probs=75.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      .+++|||+|+.|+.+|..|.+. |++|+++|+.+.+++....                                     .
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~~~~-------------------------------------~  178 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQLLD-------------------------------------P  178 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchhhhh-------------------------------------H
Confidence            6999999999999999999999 9999999999876553210                                     2


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEE--EEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG--VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~g--v~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. ..|++++.++.+.++...++....  +...              ....+.+|.++++.|...+
T Consensus       179 ~~~~~~~~~l~-~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         179 EVAEELAELLE-KYGVELLLGTKVVGVEGKGNTLVVERVVGI--------------DGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCceEEEEcccCcceeeEEEEe--------------CCcEEEeeEEEEeeccccc
Confidence            23344444444 678999999999999876654443  2222              2378999999999996654

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.41  E-value=6.1e-07  Score=86.50  Aligned_cols=37  Identities=41%  Similarity=0.580  Sum_probs=34.1

Q ss_pred             ccEEEECCChHHHHHHHHhhc--CCCCeEEEEeccCCCCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSK--NPNIQIAIIEQSVSPGG  128 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~--~~G~~V~liEk~~~~gg  128 (321)
                      .+|+|||+||||+.||..|++  . |.+|+|+|+.+.+||
T Consensus        27 ~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         27 LHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPFG   65 (491)
T ss_pred             CcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCcc
Confidence            589999999999999999986  6 999999999988876

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.40  E-value=6.2e-06  Score=79.13  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  199 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANF-GSKVTILEAASLFLPR--------------------------------------EDR  199 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCC--------------------------------------cCH
Confidence            3899999999999999999999 9999999987432100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.++.+.++..+++.+. +...               ..++.+|.||+|+|....
T Consensus       200 ~~~~~l~~~l~-~~gV~v~~~~~v~~i~~~~~~v~-v~~~---------------~g~i~~D~vl~a~G~~pn  255 (441)
T PRK08010        200 DIADNIATILR-DQGVDIILNAHVERISHHENQVQ-VHSE---------------HAQLAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEc---------------CCeEEeCEEEEeecCCcC
Confidence            33445555555 67999999999999987665432 2221               135889999999996654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.39  E-value=5.3e-06  Score=79.57  Aligned_cols=132  Identities=16%  Similarity=0.181  Sum_probs=84.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||||..|+..|..|++. |.+|+|+++.+.+...                           +           ..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~~---------------------------~-----------d~  189 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYER-GLHPTLIHRSDKINKL---------------------------M-----------DA  189 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccchh---------------------------c-----------CH
Confidence            4799999999999999999999 9999999987532110                           0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ++...+.+.+. +.|++++.++.++++.  +.   .+.+.+              +.++.+|.||+|+|......     
T Consensus       190 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~--~~---~v~~~~--------------g~~~~~D~vl~a~G~~pn~~-----  244 (438)
T PRK13512        190 DMNQPILDELD-KREIPYRLNEEIDAIN--GN---EVTFKS--------------GKVEHYDMIIEGVGTHPNSK-----  244 (438)
T ss_pred             HHHHHHHHHHH-hcCCEEEECCeEEEEe--CC---EEEECC--------------CCEEEeCEEEECcCCCcChH-----
Confidence            33344555554 6799999999999884  22   233321              25689999999999554321     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.+.  .+.....+.++.       +.+...|++|+.||.+.
T Consensus       245 ~l~~~gl--~~~~~G~i~Vd~-------~~~t~~~~IyA~GD~~~  280 (438)
T PRK13512        245 FIESSNI--KLDDKGFIPVND-------KFETNVPNIYAIGDIIT  280 (438)
T ss_pred             HHHhcCc--ccCCCCcEEECC-------CcccCCCCEEEeeeeEE
Confidence            2333332  011111122222       12335689999999875

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.39  E-value=6.7e-06  Score=79.78  Aligned_cols=99  Identities=11%  Similarity=0.151  Sum_probs=69.8

Q ss_pred             ccEEEECCChHHHHHHHHh---hcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           91 TDVVVVGAGSAGLSCAYEL---SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~L---a~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      -.++|||||..|+..|..+   .+. |.+|+|||+.+.+...                                      
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il~~--------------------------------------  228 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMILRG--------------------------------------  228 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCccccc--------------------------------------
Confidence            4799999999999999755   345 8999999987542110                                      


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ...++.+.+.+.+. +.|++++.++.++++..+++....+...              ++.++.+|.||+|+|...+
T Consensus       229 ~d~~~~~~l~~~L~-~~GI~i~~~~~v~~i~~~~~~~~~v~~~--------------~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       229 FDSTLRKELTKQLR-ANGINIMTNENPAKVTLNADGSKHVTFE--------------SGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             cCHHHHHHHHHHHH-HcCCEEEcCCEEEEEEEcCCceEEEEEc--------------CCCEEEcCEEEEeeCCCcC
Confidence            01344455666665 6799999999999997654433333332              1257999999999996554

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.39  E-value=6.1e-06  Score=80.41  Aligned_cols=96  Identities=15%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      +++|||+|..|+..|..|++. |.+|+|+++.. +...                                      ...+
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~-~l~~--------------------------------------~d~~  223 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRSI-PLRG--------------------------------------FDRQ  223 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCc-cccc--------------------------------------CCHH
Confidence            799999999999999999999 99999998642 1000                                      0022


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +.+.+.+.+. +.|++++.++.+.++...++.+ .+...+              +.++.+|.||+|+|..+.
T Consensus       224 ~~~~l~~~l~-~~GV~i~~~~~v~~v~~~~~~~-~v~~~~--------------g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        224 CSEKVVEYMK-EQGTLFLEGVVPINIEKMDDKI-KVLFSD--------------GTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHH-HcCCEEEcCCeEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEEeeCCCCC
Confidence            3345555554 6799999999998887655432 233321              246899999999995543

>PTZ00058 glutathione reductase; Provisional

Probab=98.38  E-value=8e-06  Score=80.37  Aligned_cols=139  Identities=9%  Similarity=0.087  Sum_probs=87.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il~~--------------------------------------~d~  278 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLLRK--------------------------------------FDE  278 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEeccccccc--------------------------------------CCH
Confidence            4799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                      ++.+.+.+.+. +.|++++.++.+.++..+++ .+. +...+             ...++.+|.||+|+|.......-  
T Consensus       279 ~i~~~l~~~L~-~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~-------------~~~~i~aD~VlvA~Gr~Pn~~~L--  341 (561)
T PTZ00058        279 TIINELENDMK-KNNINIITHANVEEIEKVKEKNLT-IYLSD-------------GRKYEHFDYVIYCVGRSPNTEDL--  341 (561)
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------CCEEEECCEEEECcCCCCCcccc--
Confidence            33445555554 67999999999999875433 222 11111             12579999999999954432200  


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                       .+.+.+.   ......+.++       .+.+...|++|+.||.+..
T Consensus       342 -~l~~~~~---~~~~G~I~VD-------e~lqTs~p~IYA~GDv~~~  377 (561)
T PTZ00058        342 -NLKALNI---KTPKGYIKVD-------DNQRTSVKHIYAVGDCCMV  377 (561)
T ss_pred             -Cccccce---ecCCCeEEEC-------cCCccCCCCEEEeEeccCc
Confidence             0011110   0111112222       2234568999999999863

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.38  E-value=4e-06  Score=78.79  Aligned_cols=108  Identities=19%  Similarity=0.243  Sum_probs=66.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .||||||||+||+.+|..|.+. +..+|+||++.+..-   +.. ....         ..+. .+.            ..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~---y~~-~~l~---------~~~~-~~~------------~~   56 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE---YNK-PDLS---------HVFS-QGQ------------RA   56 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC---cCc-CcCc---------HHHh-CCC------------CH
Confidence            4899999999999999999873 367899999875210   100 0000         0000 000            11


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .++.....+...++.|++++.+++|+.+..++..+.   +               +..++.+|+||+|||...
T Consensus        57 ~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~---~---------------~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         57 DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVK---S---------------QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEE---E---------------CCeEEeCCEEEECCCCCC
Confidence            222221122333357999999999999876554332   2               125799999999999764

>PRK10262 thioredoxin reductase; Provisional

Probab=98.37  E-value=7.7e-06  Score=75.08  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=98.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. +.+|+++++.+....                                       . .
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~~~---------------------------------------~-~  185 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA---------------------------------------E-K  185 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCccCC---------------------------------------C-H
Confidence            4899999999999999999999 999999998742100                                       0 1


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.+++++.++.++++..+++.+.++....+      .  ..++..++.+|.||+|.|......     
T Consensus       186 ~~~~~~~~~l~-~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~------~--~~~~~~~i~~D~vv~a~G~~p~~~-----  251 (321)
T PRK10262        186 ILIKRLMDKVE-NGNIILHTNRTLEEVTGDQMGVTGVRLRDT------Q--NSDNIESLDVAGLFVAIGHSPNTA-----  251 (321)
T ss_pred             HHHHHHHhhcc-CCCeEEEeCCEEEEEEcCCccEEEEEEEEc------C--CCCeEEEEECCEEEEEeCCccChh-----
Confidence            12234444554 679999999999999765556666665421      0  011235799999999999554322     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhcc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAR  319 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~  319 (321)
                       +...++  .+ ....+..+. . ....+.+...|++|+.||.+...      ....-..+-.|.+||.
T Consensus       252 -l~~~~l--~~-~~g~i~vd~-~-~~~~~~~t~~~~VyA~GD~~~~~------~~~~~~A~~~g~~Aa~  308 (321)
T PRK10262        252 -IFEGQL--EL-ENGYIKVQS-G-IHGNATQTSIPGVFAAGDVMDHI------YRQAITSAGTGCMAAL  308 (321)
T ss_pred             -Hhhccc--cc-cCCEEEECC-C-CcccccccCCCCEEECeeccCCC------cceEEEEehhHHHHHH
Confidence             111111  01 011122221 0 01113456789999999987311      1223335666666653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.37  E-value=1e-06  Score=83.29  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .+|||||||++|+.||..|++. +.  +|+||++.....   +.... ..        ..++...  ...   ... ...
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~~---y~r~~-l~--------~~~~~~~--~~~---~~~-~~~   64 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHLP---YERPP-LS--------KSMLLED--SPQ---LQQ-VLP   64 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCCC---CCCCC-CC--------HHHHCCC--Ccc---ccc-cCC
Confidence            5899999999999999999987 54  799999875321   10000 00        0011100  000   000 000


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       .       +.. ++.+++++.++.|+.+..++..+   .+.              ++.++.+|++|+|||...
T Consensus        65 -~-------~~~-~~~~i~~~~g~~V~~id~~~~~v---~~~--------------~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         65 -A-------NWW-QENNVHLHSGVTIKTLGRDTREL---VLT--------------NGESWHWDQLFIATGAAA  112 (396)
T ss_pred             -H-------HHH-HHCCCEEEcCCEEEEEECCCCEE---EEC--------------CCCEEEcCEEEEccCCCC
Confidence             1       112 24699999999998887655432   222              125799999999999765

>PLN02268 probable polyamine oxidase

Probab=98.37  E-value=7.3e-07  Score=85.33  Aligned_cols=40  Identities=28%  Similarity=0.536  Sum_probs=37.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL  132 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~  132 (321)
                      +|+|||||++||+||+.|.+. |++|+|+|+++.+||..+.
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGri~t   41 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGRVHT   41 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCceeee
Confidence            799999999999999999998 9999999999999998753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.35  E-value=1.1e-06  Score=81.74  Aligned_cols=39  Identities=31%  Similarity=0.505  Sum_probs=35.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+|+|||+|++|+.+|..|++. |.+|+|+|+.+.++|.
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg~   56 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPGGL   56 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCce
Confidence            45999999999999999999999 9999999998877653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.35  E-value=1.2e-05  Score=77.41  Aligned_cols=147  Identities=14%  Similarity=0.150  Sum_probs=87.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+-+|..|.+. |.+|+|+++.....                             +.        ..  
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~~~-----------------------------~~--------~~--  312 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTRED-----------------------------MT--------AR--  312 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCccc-----------------------------CC--------CC--
Confidence            4899999999999999999999 99999999874200                             00        00  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                         ...++.+. +.||++++++.++++..+ ++++.++.+...... .+.++.     ..++..++.+|.||+|.|-...
T Consensus       313 ---~~~~~~l~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~  388 (449)
T TIGR01316       313 ---VEEIAHAE-EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN  388 (449)
T ss_pred             ---HHHHHHHH-hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence               11123343 679999999999998764 567877766421000 000000     0123457999999999995432


Q ss_pred             CcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          244 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       244 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .     ..+.+.++.  +.....+..+.       ..+...|++|+.|+.+.
T Consensus       389 ~-----~~l~~~gl~--~~~~G~i~vd~-------~~~Ts~~~VfA~GD~~~  426 (449)
T TIGR01316       389 P-----IMAETTRLK--TSERGTIVVDE-------DQRTSIPGVFAGGDIIL  426 (449)
T ss_pred             c-----hhhhccCcc--cCCCCeEEeCC-------CCccCCCCEEEecCCCC
Confidence            1     112222220  11111121221       12345799999999873

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.34  E-value=8.7e-06  Score=78.36  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+|||+.+.+...                           +           ..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ll~~---------------------------~-----------d~  210 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKLLRH---------------------------L-----------DE  210 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccccc---------------------------c-----------CH
Confidence            4899999999999999999999 9999999987532100                           0           01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+. ++. +.+++++.++.++++..+++.+. +...              ++.++.+|.||+|+|....
T Consensus       211 ~~~~~l~-~~~-~~gI~i~~~~~V~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       211 DISDRFT-EIA-KKKWDIRLGRNVTAVEQDGDGVT-LTLD--------------DGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHH-HHH-hcCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCCEEEcCEEEEeeccCcC
Confidence            2223333 233 35799999999999976655432 2221              1257999999999995544

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.32  E-value=1.2e-06  Score=89.56  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=34.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ...|+|||+||||+++|++|++. |++|+|+|+....|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEccccccccc
Confidence            56999999999999999999999 9999999997655443

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.32  E-value=3.8e-06  Score=78.60  Aligned_cols=96  Identities=18%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCC------------CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNP------------NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD  158 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~------------G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~  158 (321)
                      .+++|||||+.|...|-+|++.-            .++|.|||+.+.+--                              
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------  205 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------  205 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence            57999999999999999987520            248899998864211                              


Q ss_pred             cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                              .....+.....+.+ ++.||+++.++.|+++..  +   +|.+.+            ++ .+|.++.+|.|+
T Consensus       206 --------~~~~~l~~~a~~~L-~~~GV~v~l~~~Vt~v~~--~---~v~~~~------------g~-~~I~~~tvvWaa  258 (405)
T COG1252         206 --------MFPPKLSKYAERAL-EKLGVEVLLGTPVTEVTP--D---GVTLKD------------GE-EEIPADTVVWAA  258 (405)
T ss_pred             --------CCCHHHHHHHHHHH-HHCCCEEEcCCceEEECC--C---cEEEcc------------CC-eeEecCEEEEcC
Confidence                    01133334433334 478999999999999843  3   344432            11 269999999999


Q ss_pred             CCCCC
Q 020815          239 GHDGP  243 (321)
Q Consensus       239 G~~~~  243 (321)
                      |-.++
T Consensus       259 Gv~a~  263 (405)
T COG1252         259 GVRAS  263 (405)
T ss_pred             CCcCC
Confidence            96665

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.32  E-value=1.3e-05  Score=77.39  Aligned_cols=100  Identities=16%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  210 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRILPL--------------------------------------EDP  210 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCcc--------------------------------------hhH
Confidence            4899999999999999999999 9999999997532110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +. ++++.++.+.++..+++  ..+....          .+++..++.+|.||+|+|....
T Consensus       211 ~~~~~~~~~l~-~~-I~i~~~~~v~~i~~~~~--~~v~~~~----------~~~~~~~i~~D~vi~a~G~~p~  269 (460)
T PRK06292        211 EVSKQAQKILS-KE-FKIKLGAKVTSVEKSGD--EKVEELE----------KGGKTETIEADYVLVATGRRPN  269 (460)
T ss_pred             HHHHHHHHHHh-hc-cEEEcCCEEEEEEEcCC--ceEEEEE----------cCCceEEEEeCEEEEccCCccC
Confidence            33445555554 56 99999999999976544  1222110          0113467999999999995443

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.32  E-value=4e-06  Score=80.02  Aligned_cols=93  Identities=24%  Similarity=0.299  Sum_probs=65.3

Q ss_pred             cEEEECCChHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD  158 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-------------~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~  158 (321)
                      .++|||||+.|+..|..|++.             ++.+|+|||+.+.+...                             
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-----------------------------  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-----------------------------  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence            799999999999999998751             27899999987532110                             


Q ss_pred             cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                               ....+.+.+.+.+. +.||+++.+++++++.  ++.   +.+.+              +.++.+|.||+|+
T Consensus       226 ---------~~~~~~~~~~~~L~-~~gV~v~~~~~v~~v~--~~~---v~~~~--------------g~~i~~d~vi~~~  276 (424)
T PTZ00318        226 ---------FDQALRKYGQRRLR-RLGVDIRTKTAVKEVL--DKE---VVLKD--------------GEVIPTGLVVWST  276 (424)
T ss_pred             ---------CCHHHHHHHHHHHH-HCCCEEEeCCeEEEEe--CCE---EEECC--------------CCEEEccEEEEcc
Confidence                     01223444455554 6899999999998874  332   33321              2579999999999


Q ss_pred             CCCC
Q 020815          239 GHDG  242 (321)
Q Consensus       239 G~~~  242 (321)
                      |...
T Consensus       277 G~~~  280 (424)
T PTZ00318        277 GVGP  280 (424)
T ss_pred             CCCC
Confidence            9544

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.32  E-value=7.2e-07  Score=79.38  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=38.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      +|++|||+|.+|+..|..|++. |.+|+||||++.+||+|+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGNaY   41 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAY   41 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCccc
Confidence            7999999999999999999999 999999999999999985

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.31  E-value=1.5e-05  Score=77.39  Aligned_cols=99  Identities=18%  Similarity=0.184  Sum_probs=68.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      .++|||||..|+.+|..|++. |.+|+|+++......                                       ...+
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l~~---------------------------------------~d~~  221 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSILLRG---------------------------------------FDQD  221 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCcEEEEEecccccc---------------------------------------cCHH
Confidence            699999999999999999999 999999987421000                                       0123


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +.+.+.+.+. +.|++++.++.++++...++.+. +...++      .     ...++.+|.||+|+|....
T Consensus       222 ~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~~~------~-----~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       222 CANKVGEHME-EHGVKFKRQFVPIKVEQIEAKVK-VTFTDS------T-----NGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHH-HcCCEEEeCceEEEEEEcCCeEE-EEEecC------C-----cceEEEeCEEEEEecCCcC
Confidence            3445555554 67999999999888876555332 332210      0     1247999999999995543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.30  E-value=6.9e-06  Score=75.48  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +...+...|.+.+. +.|++++.+++|+++..+++++.+|.+..               .+++||.||+|+|.+..
T Consensus       135 ~p~~l~~~l~~~~~-~~g~~~~~~~~v~~i~~~~~~~~~v~~~~---------------g~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       135 DPRALLKALEKALE-KLGVEIIEHTEVQHIEIRGEKVTAIVTPS---------------GDVQADQVVLAAGAWAG  194 (337)
T ss_pred             ChHHHHHHHHHHHH-HcCCEEEccceEEEEEeeCCEEEEEEcCC---------------CEEECCEEEEcCChhhh
Confidence            45677788888876 67999999999999998888888887632               47999999999997654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.30  E-value=1.3e-06  Score=84.78  Aligned_cols=38  Identities=34%  Similarity=0.590  Sum_probs=35.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg  128 (321)
                      ..+|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~gG  180 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCGG  180 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCCc
Confidence            46999999999999999999999 999999999887765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.30  E-value=7.2e-07  Score=86.20  Aligned_cols=40  Identities=35%  Similarity=0.559  Sum_probs=37.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..+|||||||++||+||.+|.+. |.+|+|+|.++.+||..
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGRI   54 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGRI   54 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCcee
Confidence            57999999999999999999999 99999999999999765

>PLN02546 glutathione reductase

Probab=98.30  E-value=1.3e-05  Score=78.94  Aligned_cols=139  Identities=14%  Similarity=0.185  Sum_probs=84.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~il~~--------------------------------------~d~  293 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKVLRG--------------------------------------FDE  293 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccccccc--------------------------------------cCH
Confidence            3799999999999999999998 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.||+++.++.+.++..+++....+...              +.....+|.||+|+|...+...-   
T Consensus       294 ~~~~~l~~~L~-~~GV~i~~~~~v~~i~~~~~g~v~v~~~--------------~g~~~~~D~Viva~G~~Pnt~~L---  355 (558)
T PLN02546        294 EVRDFVAEQMS-LRGIEFHTEESPQAIIKSADGSLSLKTN--------------KGTVEGFSHVMFATGRKPNTKNL---  355 (558)
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCEEEEEEEcCCCEEEEEEC--------------CeEEEecCEEEEeeccccCCCcC---
Confidence            33344555554 6799999999999987643322223221              11334589999999955542200   


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.+.  .+.....+.++.       +.+...|++|+.||.+.
T Consensus       356 ~le~~gl--~~d~~G~I~VD~-------~l~Ts~p~IYAaGDv~~  391 (558)
T PLN02546        356 GLEEVGV--KMDKNGAIEVDE-------YSRTSVPSIWAVGDVTD  391 (558)
T ss_pred             ChhhcCC--cCCCCCcEeECC-------CceeCCCCEEEeeccCC
Confidence            0112221  010011122222       23446799999999874

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.30  E-value=7.9e-07  Score=83.03  Aligned_cols=40  Identities=30%  Similarity=0.532  Sum_probs=37.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      +||+|||||++|+++|+.|++. |.+|+|||++..+||.|+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG~~~   41 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGGNCY   41 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCcee
Confidence            6999999999999999999998 999999999988888663

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07208 hypothetical protein; Provisional

Probab=98.29  E-value=8.1e-07  Score=86.10  Aligned_cols=40  Identities=40%  Similarity=0.688  Sum_probs=37.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..||+|||||++||+||+.|++. |++|+|+|+.+.+||.+
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~~   43 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGIS   43 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcee
Confidence            57999999999999999999999 99999999999998864

>PRK12831 putative oxidoreductase; Provisional

Probab=98.28  E-value=2e-05  Score=76.04  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=71.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+-+|..|.+. |.+|+|+++.....   +                        +          ....
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~~~---m------------------------~----------a~~~  323 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSEEE---L------------------------P----------ARVE  323 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCccc---C------------------------C----------CCHH
Confidence            4899999999999999999999 99999999763200   0                        0          0001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecce-ecccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +     ++.+. +.|+++++.+.++++..+ ++++.++.+..... ..+.++.     .+++..++.+|.||+|.|-..
T Consensus       324 e-----~~~a~-~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p  396 (464)
T PRK12831        324 E-----VHHAK-EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSP  396 (464)
T ss_pred             H-----HHHHH-HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCC
Confidence            1     12233 579999999999998764 56788877642100 0010100     022345799999999999544

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.1e-05  Score=68.33  Aligned_cols=97  Identities=14%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhh
Q 020815          174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLK  253 (321)
Q Consensus       174 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~  253 (321)
                      ..+.++++++++|++++++.+++..-+.+.+.++...+      .   ..|+...+..+-+..+-|+....-        
T Consensus       196 ~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn------~---~tge~~dl~v~GlFf~IGH~Pat~--------  258 (322)
T KOG0404|consen  196 KIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKN------V---KTGEETDLPVSGLFFAIGHSPATK--------  258 (322)
T ss_pred             HHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEe------c---ccCcccccccceeEEEecCCchhh--------
Confidence            56778888899999999998888766655555665543      2   223557789999999999654321        


Q ss_pred             hcCCcccccCCceeecccccchhhc--ccccccccccccccchh
Q 020815          254 SIGMIEEVPGMKALDMNSAEDAIVR--LTREVVPGMIVTGMEVA  295 (321)
Q Consensus       254 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~~g~~~~  295 (321)
                            ++.+...+  +...+.+..  .....+||+|..|+.+.
T Consensus       259 ------~l~gqve~--d~~GYi~t~pgts~TsvpG~FAAGDVqD  294 (322)
T KOG0404|consen  259 ------FLKGQVEL--DEDGYIVTRPGTSLTSVPGVFAAGDVQD  294 (322)
T ss_pred             ------HhcCceee--ccCceEEeccCcccccccceeeccccch
Confidence                  23332222  222222222  34457899999998763

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.26  E-value=2.2e-05  Score=75.65  Aligned_cols=109  Identities=16%  Similarity=0.166  Sum_probs=70.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||+|..|+-+|..|.+. |. +|+++++.....   +                        +.          . 
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~~~---~------------------------~~----------~-  314 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGREE---M------------------------PA----------S-  314 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---C------------------------CC----------C-
Confidence            4899999999999999999998 77 899999863210   0                        00          0 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecce-ecccCCC----CCCCceEEEcCeEEEcCCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQ----SCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~-~~~~~~~----~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .    ...+.+. +.||+++.++.+.++..+++.+.+|.+..... ..+.++.    .+++..++.+|.||+|.|....
T Consensus       315 ~----~~~~~~~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~  388 (457)
T PRK11749        315 E----EEVEHAK-EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN  388 (457)
T ss_pred             H----HHHHHHH-HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence            0    0123333 67999999999999876666555565432100 0000000    0124468999999999995543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.23  E-value=1.3e-05  Score=76.50  Aligned_cols=116  Identities=20%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+|||||||.+|+.+|..|.+. +.+|+|||+.+..         .+.      +   .+-+...     +.    ...
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~---------~~~------~---~l~~~~~-----g~----~~~   61 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM---------LFT------P---LLPQTTT-----GT----LEF   61 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc---------chh------h---hHHHhcc-----cC----CCh
Confidence            46999999999999999999876 7999999987531         000      0   0101000     00    011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+ +..+++++.+ +|++|..+++.+.-.....     +..  .+.++.++.+|++|+|+|...
T Consensus        62 ~~~~~~~~~~~-~~~~~~~i~~-~V~~Id~~~~~v~~~~~~~-----~~~--~~~~g~~i~yD~LViAtGs~~  125 (424)
T PTZ00318         62 RSICEPVRPAL-AKLPNRYLRA-VVYDVDFEEKRVKCGVVSK-----SNN--ANVNTFSVPYDKLVVAHGARP  125 (424)
T ss_pred             HHhHHHHHHHh-ccCCeEEEEE-EEEEEEcCCCEEEEecccc-----ccc--ccCCceEecCCEEEECCCccc
Confidence            22333333333 3567888766 8999877776543211000     000  001336799999999999764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.22  E-value=2.2e-06  Score=81.89  Aligned_cols=39  Identities=28%  Similarity=0.496  Sum_probs=34.2

Q ss_pred             cccEEEECCChHHHHHHHHhh-cCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELS-KNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La-~~~G~~V~liEk~~~~gg~  129 (321)
                      ...|+|||+||||+.||.+|. +. |.+|.|+|+.+.+||-
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgGL   78 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYGL   78 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCccE
Confidence            357999999999999999765 56 9999999999988863

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.22  E-value=2e-06  Score=86.22  Aligned_cols=39  Identities=36%  Similarity=0.674  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+|+|||+|++|+++|+.|++. |++|+|+|+.+.+||-
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~GG~  348 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIGGM  348 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCCCe
Confidence            57899999999999999999999 9999999999877763

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.20  E-value=1.3e-06  Score=83.71  Aligned_cols=38  Identities=39%  Similarity=0.672  Sum_probs=35.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~~  130 (321)
                      +|+|||||++||+||+.|++. |  .+|+|+|+++.+||.+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr~   41 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGKI   41 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcceE
Confidence            699999999999999999997 6  8999999999998865

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.19  E-value=3.3e-05  Score=77.31  Aligned_cols=108  Identities=14%  Similarity=-0.002  Sum_probs=70.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||..|+..|..|++. |.+|+|||+.+.+...                                      ...
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll~~--------------------------------------~d~  353 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLLPL--------------------------------------LDA  353 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccccc--------------------------------------CCH
Confidence            3799999999999999999999 9999999997542110                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCC-CC------CceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQS-CM------DPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~-~g------~~~~i~a~~VI~AtG~~~  242 (321)
                      ++...+.+.+.++.||+++.++.|.++..+++ ....+....      ..++. ++      +..++.+|.||+|+|...
T Consensus       354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~------~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P  427 (659)
T PTZ00153        354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSE------RQTGESDGPKKNMNDIKETYVDSCLVATGRKP  427 (659)
T ss_pred             HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEec------cccccccccccccccceEEEcCEEEEEECccc
Confidence            23334444443467999999999999976543 111122110      00000 00      124799999999999554


Q ss_pred             C
Q 020815          243 P  243 (321)
Q Consensus       243 ~  243 (321)
                      .
T Consensus       428 n  428 (659)
T PTZ00153        428 N  428 (659)
T ss_pred             C
Confidence            4

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=3.5e-05  Score=72.62  Aligned_cols=141  Identities=23%  Similarity=0.236  Sum_probs=76.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCC--CCeEEEEeccCCCCCccccCcccc--------hhhhcc-----chHHHHHHHcCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNP--NIQIAIIEQSVSPGGGAWLGGQLF--------SAMVVR-----KPAHIFLDELGI  155 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~--G~~V~liEk~~~~gg~~~~~g~~~--------~~~~~~-----~~~~~~l~~~g~  155 (321)
                      ++|+|||+|++|+.+|.+|.+.+  ..++.|+|+....|.+.-......        ..+-..     ....+||...+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            58999999999999999998842  234999999988775532221111        011111     135678877633


Q ss_pred             CcccC------CC-eEEEecHHHHHHHHHHHHHcCCC---cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          156 DYDEQ------DN-YVVIKHAALFTSTIMSKLLARPN---VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       156 ~~~~~------~~-~~~~~~~~~~~~~l~~~~~~~~g---v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                      .+...      .. |....-..+|....++.+.++.-   +.. ..++++++..+++-.....+.+             +
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~-~~~~a~~~~~~~n~~~~~~~~~-------------~  147 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRT-IREEATSVRQDTNAGGYLVTTA-------------D  147 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeE-EeeeeecceeccCCceEEEecC-------------C
Confidence            32211      11 11111112333333333332211   333 3446666666532222222221             3


Q ss_pred             ceEEEcCeEEEcCCCCCCCc
Q 020815          226 PNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~~  245 (321)
                      +....|+.+|+|||+.-+..
T Consensus       148 g~~~~ad~~Vlatgh~~~~~  167 (474)
T COG4529         148 GPSEIADIIVLATGHSAPPA  167 (474)
T ss_pred             CCeeeeeEEEEeccCCCCCc
Confidence            46788999999999876544

>PRK13984 putative oxidoreductase; Provisional

Probab=98.15  E-value=3.8e-06  Score=83.82  Aligned_cols=39  Identities=38%  Similarity=0.670  Sum_probs=35.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+|+|||+|++|+++|..|++. |++|+|+|+...+||.
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~gG~  321 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPGGV  321 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCce
Confidence            56899999999999999999999 9999999998877663

>PLN02576 protoporphyrinogen oxidase

Probab=98.15  E-value=2.5e-06  Score=83.06  Aligned_cols=42  Identities=36%  Similarity=0.594  Sum_probs=37.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      ++||+|||||++||++|++|++..|.+|+|+|+.+.+||.++
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT   53 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence            579999999999999999999852599999999999998753

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.14  E-value=1.9e-05  Score=73.76  Aligned_cols=106  Identities=14%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             cEEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           92 DVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .|||||||++|+.+|..|.++  ++.+|+|||++...-   +      ...+     ..++.  |           ....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~---~------~~~~-----~~~~~--g-----------~~~~   53 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP---Y------SGML-----PGMIA--G-----------HYSL   53 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc---c------cchh-----hHHHh--e-----------eCCH
Confidence            489999999999999999642  378999999875310   0      0000     00110  0           0011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .++...+.+.+ ++.|++++.+ +|+.+..++..   |.+.              ++.+++.|++|+|||....
T Consensus        54 ~~~~~~~~~~~-~~~gv~~~~~-~v~~id~~~~~---V~~~--------------~g~~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        54 DEIRIDLRRLA-RQAGARFVIA-EATGIDPDRRK---VLLA--------------NRPPLSYDVLSLDVGSTTP  108 (364)
T ss_pred             HHhcccHHHHH-HhcCCEEEEE-EEEEEecccCE---EEEC--------------CCCcccccEEEEccCCCCC
Confidence            22222223333 3578999876 78888766653   3332              1256899999999997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.13  E-value=3.2e-05  Score=69.79  Aligned_cols=39  Identities=33%  Similarity=0.593  Sum_probs=34.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .-+|.|||+|++||+||+.|+++  .+|+|+|.+...||-.
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGha   46 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGHA   46 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccCcc
Confidence            45899999999999999999997  8999999998887643

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.11  E-value=8.6e-06  Score=74.13  Aligned_cols=39  Identities=38%  Similarity=0.592  Sum_probs=34.5

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG  128 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg  128 (321)
                      ...|+|||+||||+.+|..|.+ .++++|.|+|+.+.+.|
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            3589999999999999999888 35899999999988766

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.10  E-value=3.2e-06  Score=81.50  Aligned_cols=41  Identities=34%  Similarity=0.597  Sum_probs=36.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCC---CCeEEEEeccCCCCCccc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~liEk~~~~gg~~~  131 (321)
                      .||+|||||++||++|+.|++..   |.+|+|+|+++.+||.++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~   46 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ   46 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence            58999999999999999999862   799999999999988753

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.10  E-value=3.4e-05  Score=74.70  Aligned_cols=117  Identities=18%  Similarity=0.250  Sum_probs=71.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||+|..|+-+|..+.+. |. +|++++....+....                          +.. ..+..+  .
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~-ga~~Vt~~~~~~~~~~~~--------------------------~~~-~~~~~~--~  331 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQ-GAKSVTQRDIMPMPPSRR--------------------------NKN-NPWPYW--P  331 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCeEEEccccCCCcccc--------------------------ccc-cCCccc--c
Confidence            4799999999999999988887 65 788777653221100                          000 000000  0


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC--CCCCCCceEEEcCeEEEcCCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--TQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~--~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ..   ...+.+. +.|+++++++.++++..+++++.+|.....  .....  ....++..++.+|.||+|+|....
T Consensus       332 ~~---~~~~~~~-~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~--~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~  401 (471)
T PRK12810        332 MK---LEVSNAH-EEGVEREFNVQTKEFEGENGKVTGVKVVRT--ELGEGDFEPVEGSEFVLPADLVLLAMGFTGP  401 (471)
T ss_pred             hH---HHHHHHH-HcCCeEEeccCceEEEccCCEEEEEEEEEE--EecCCCccccCCceEEEECCEEEECcCcCCC
Confidence            00   1123333 579999999999999766788888876421  11000  001124478999999999995543

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.10  E-value=5.8e-05  Score=73.93  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=50.9

Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +...+...+.+.+. +.|++++++++|+++..+++++.+|.+.+.         .+++..+++|+.||+|+|.++
T Consensus       126 dp~~l~~al~~~A~-~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~---------~~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       126 DPFRLVAANVLDAQ-EHGARIFTYTKVTGLIREGGRVTGVKVEDH---------KTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             CHHHHHHHHHHHHH-HcCCEEEcCcEEEEEEEECCEEEEEEEEEc---------CCCcEEEEEcCEEEECCCcch
Confidence            45667777777776 689999999999999998898888887431         112346899999999999665

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.03  E-value=4.5e-06  Score=80.55  Aligned_cols=40  Identities=33%  Similarity=0.558  Sum_probs=35.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCC-----CCeEEEEeccCCCCCccc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNP-----NIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~-----G~~V~liEk~~~~gg~~~  131 (321)
                      +|+|||||++||+||+.|++.+     +.+|+|+|+.+.+||.++
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~   47 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH   47 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence            6999999999999999999851     479999999999998753

>PLN02676 polyamine oxidase

Probab=98.03  E-value=6e-06  Score=80.12  Aligned_cols=45  Identities=38%  Similarity=0.547  Sum_probs=38.6

Q ss_pred             cccCCcccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 020815           85 MITYADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA  130 (321)
Q Consensus        85 ~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~  130 (321)
                      |.....+||+|||||++||+||++|++. |. +|+|+|++..+||..
T Consensus        21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~~   66 (487)
T PLN02676         21 MDAKPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGRM   66 (487)
T ss_pred             hcccCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCcc
Confidence            3333468999999999999999999999 88 699999999888754

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.02  E-value=0.00012  Score=75.01  Aligned_cols=109  Identities=13%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||||..|+-+|..|.+. |.+ |+|+++.....   +                        +          ...
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~~~---~------------------------~----------~~~  612 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSEEE---M------------------------P----------ARL  612 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---C------------------------C----------CCH
Confidence            4799999999999999999998 886 99999863200   0                        0          000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+     ++.+. +.|+++++.+.+.++..+ ++++.++.+...... .+.++.     ..++..++.+|.||+|.|...
T Consensus       613 ~e-----~~~~~-~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p  686 (752)
T PRK12778        613 EE-----VKHAK-EEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP  686 (752)
T ss_pred             HH-----HHHHH-HcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCC
Confidence            11     12233 579999999999898764 467888776421000 000000     112346799999999999554


Q ss_pred             C
Q 020815          243 P  243 (321)
Q Consensus       243 ~  243 (321)
                      .
T Consensus       687 ~  687 (752)
T PRK12778        687 N  687 (752)
T ss_pred             C
Confidence            3

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.01  E-value=7.7e-05  Score=69.41  Aligned_cols=106  Identities=23%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||+|..|+.+|..|.+. |.+ |+|+++.....                           .+           . 
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~~~~---------------------------~~-----------~-  212 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRTINE---------------------------AP-----------A-  212 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecchhh---------------------------CC-----------C-
Confidence            4799999999999999999888 886 99999763200                           00           0 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC--------CCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--------TQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~--------~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                         ...+.+++. ..|+++++++.++++..+ +++..+.....  .++..        ...+++..++.+|.||+|+|..
T Consensus       213 ---~~~~~~~l~-~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~  285 (352)
T PRK12770        213 ---GKYEIERLI-ARGVEFLELVTPVRIIGE-GRVEGVELAKM--RLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI  285 (352)
T ss_pred             ---CHHHHHHHH-HcCCEEeeccCceeeecC-CcEeEEEEEEE--EecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence               011233343 579999999988887643 45555544221  00000        0011244689999999999965


Q ss_pred             CC
Q 020815          242 GP  243 (321)
Q Consensus       242 ~~  243 (321)
                      ..
T Consensus       286 p~  287 (352)
T PRK12770        286 PT  287 (352)
T ss_pred             CC
Confidence            43

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.01  E-value=5.7e-05  Score=70.89  Aligned_cols=159  Identities=18%  Similarity=0.166  Sum_probs=101.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .--|++||+|..|+.+|..|... +++|++|++.+.+-                       ..              ...
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~-----------------------~~--------------lf~  254 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL-----------------------PR--------------LFG  254 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch-----------------------hh--------------hhh
Confidence            45799999999999999999998 99999999975210                       00              001


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchh
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG  248 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~  248 (321)
                      ..+.+.+.+.+ +++|++++.++.+..+... ++++.-|.+.+              ..++.||.||+.+|......   
T Consensus       255 ~~i~~~~~~y~-e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--------------g~~l~adlvv~GiG~~p~t~---  316 (478)
T KOG1336|consen  255 PSIGQFYEDYY-ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--------------GKTLEADLVVVGIGIKPNTS---  316 (478)
T ss_pred             HHHHHHHHHHH-HhcCeEEEEecceeecccCCCCcEEEEEecc--------------CCEeccCeEEEeeccccccc---
Confidence            22333333334 3789999999999999865 47888888754              37899999999999655422   


Q ss_pred             hhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcC-CC--CCCCcceeeeeeecch
Q 020815          249 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID-GA--PRMGPTFGAMMISGQK  316 (321)
Q Consensus       249 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~-g~--~~~~~~~~~~~~~~~~  316 (321)
                        .+.. +.  .+...+++.++.       +-+.-+|+.|+.|+.+...- ++  -+-.+++.-.-.+|++
T Consensus       317 --~~~~-g~--~~~~~G~i~V~~-------~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~  375 (478)
T KOG1336|consen  317 --FLEK-GI--LLDSKGGIKVDE-------FFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ  375 (478)
T ss_pred             --cccc-cc--eecccCCEeehh-------ceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence              1110 11  122223333332       22334899999999874432 22  2224555555555543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=5.6e-06  Score=78.55  Aligned_cols=38  Identities=37%  Similarity=0.615  Sum_probs=36.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .|+|+|||.|||+||++|++. |++|+|+|+++.+||.+
T Consensus         2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk~   39 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGKV   39 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCcee
Confidence            599999999999999999999 99999999999999875

>PLN02568 polyamine oxidase

Probab=97.97  E-value=9.3e-06  Score=79.63  Aligned_cols=40  Identities=30%  Similarity=0.579  Sum_probs=36.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC-----CeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN-----IQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-----~~V~liEk~~~~gg~~  130 (321)
                      ..||+|||||++||+||+.|++. |     .+|+|+|++..+||.+
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr~   49 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGRI   49 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCeE
Confidence            47999999999999999999987 6     8999999999888764

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.95  E-value=9.6e-05  Score=70.15  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|||||+|.|..-+..|..|++. |++|+-+|+++..||.+
T Consensus         4 ~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~~   43 (438)
T PF00996_consen    4 EYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGEW   43 (438)
T ss_dssp             BESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGGG
T ss_pred             cceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCch
Confidence            79999999999999999999999 99999999999888654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.94  E-value=0.00026  Score=68.49  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=70.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||+|..|+.+|..+.+. |. +|+||++.....-                           +.          ..
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~~~~~---------------------------~~----------~~  324 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRDEANM---------------------------PG----------SR  324 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecCcccC---------------------------CC----------CH
Confidence            4899999999999999999888 75 7999998642100                           00          00


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .     .++.+. +.|+++++++.+.++..+ ++++.++++...... .+.++.     ..++..++.+|.||+|+|...
T Consensus       325 ~-----e~~~~~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p  398 (467)
T TIGR01318       325 R-----EVANAR-EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP  398 (467)
T ss_pred             H-----HHHHHH-hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence            1     122333 579999999999998764 567877765321000 000000     113456899999999999554


Q ss_pred             C
Q 020815          243 P  243 (321)
Q Consensus       243 ~  243 (321)
                      .
T Consensus       399 ~  399 (467)
T TIGR01318       399 H  399 (467)
T ss_pred             C
Confidence            3

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.94  E-value=4.1e-05  Score=78.56  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             EEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           93 VVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      |||||+|++|+.+|.+|.+.  .+.+|+|||+.+.++-.   .-. ...         ++.  |. .          ...
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~---r~~-L~~---------~l~--g~-~----------~~~   54 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYN---RIL-LSS---------VLQ--GE-A----------DLD   54 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcc---ccc-ccH---------HHC--CC-C----------CHH
Confidence            68999999999999988763  26799999998754311   000 000         000  00 0          001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++.....+.+. +.|++++.+++|+.+..++..   |.+.              ++.++.+|++|+|||...
T Consensus        55 ~l~~~~~~~~~-~~gv~~~~g~~V~~Id~~~k~---V~~~--------------~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        55 DITLNSKDWYE-KHGITLYTGETVIQIDTDQKQ---VITD--------------AGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HccCCCHHHHH-HCCCEEEcCCeEEEEECCCCE---EEEC--------------CCcEeeCCEEEECCCCCc
Confidence            11111112222 579999999999998766543   2332              125799999999999764

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.94  E-value=0.00017  Score=73.68  Aligned_cols=39  Identities=33%  Similarity=0.543  Sum_probs=36.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      -..|.|||.||+||+||-+|-+. |..|+|+||.+.+||-
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence            46899999999999999999999 9999999999998864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.93  E-value=4.4e-05  Score=78.67  Aligned_cols=106  Identities=11%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             cEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           92 DVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      +|||||+|++|+.+|..|.+.   ++.+|+||++.+.+.   +....+ ..         ++..  .            .
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~---Y~r~~L-~~---------~~~~--~------------~   57 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA---YDRVHL-SS---------YFSH--H------------T   57 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc---ccCCcc-hH---------hHcC--C------------C
Confidence            799999999999999999753   258999999986542   100000 00         0000  0            0


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..++.....+.+ ++.|++++.++.|+.+..+...   |.+.              ++.++.+|++|+|||...
T Consensus        58 ~~~l~~~~~~~~-~~~gI~~~~g~~V~~Id~~~~~---V~~~--------------~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         58 AEELSLVREGFY-EKHGIKVLVGERAITINRQEKV---IHSS--------------AGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             HHHccCCCHHHH-HhCCCEEEcCCEEEEEeCCCcE---EEEC--------------CCcEEECCEEEECCCCCc
Confidence            011111111222 2579999999999888655432   2232              125799999999999764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.91  E-value=0.00018  Score=71.18  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+..|..|++. |.+|+|+++.+...                             .          . .
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~~-----------------------------~----------~-~  182 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDFT-----------------------------C----------A-K  182 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCccc-----------------------------c----------C-H
Confidence            4899999999999999999999 99999999874210                             0          0 1


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE--EcCe----EEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM--EAKV----VVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i--~a~~----VI~AtG~~~~  243 (321)
                          .+.++++++.|++++.++.++++.. ++.+..+....      .   .+|+..++  .+|.    ||+|+|....
T Consensus       183 ----~~~~~~~~~~gV~i~~~~~V~~i~~-~~~v~~v~~~~------~---~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn  247 (555)
T TIGR03143       183 ----LIAEKVKNHPKIEVKFNTELKEATG-DDGLRYAKFVN------N---VTGEITEYKAPKDAGTFGVFVFVGYAPS  247 (555)
T ss_pred             ----HHHHHHHhCCCcEEEeCCEEEEEEc-CCcEEEEEEEE------C---CCCCEEEEeccccccceEEEEEeCCCCC
Confidence                1122333357999999999999864 34444443321      0   11222333  3666    9999995543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.90  E-value=0.00074  Score=64.29  Aligned_cols=40  Identities=35%  Similarity=0.557  Sum_probs=35.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~~  130 (321)
                      .++=|||+|+|+|++|.+|-+.   ||.+|.|+|+...+||+.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl   45 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL   45 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence            4688999999999999999873   588999999998888764

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.89  E-value=0.00014  Score=68.40  Aligned_cols=59  Identities=15%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +...+...|.+.+. + |++++++++|.++..+++. ..|++..              +..++|+.||+|+|.++.
T Consensus       133 dp~~~~~~l~~~~~-~-G~~i~~~~~V~~i~~~~~~-~~v~t~~--------------g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       133 SPPQLCRALLAHAG-I-RLTLHFNTEITSLERDGEG-WQLLDAN--------------GEVIAASVVVLANGAQAG  191 (381)
T ss_pred             ChHHHHHHHHhccC-C-CcEEEeCCEEEEEEEcCCe-EEEEeCC--------------CCEEEcCEEEEcCCcccc
Confidence            44677778777775 5 9999999999999877665 3454422              245899999999997764

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.88  E-value=1.3e-05  Score=76.67  Aligned_cols=74  Identities=27%  Similarity=0.328  Sum_probs=54.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      ..|.|||+||+|+++|..|++. |+.|+++|+.+.+||-..                     +|++-..        -..
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GGll~---------------------yGIP~~k--------l~k  173 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGGLLL---------------------YGIPDFK--------LPK  173 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCceeEE---------------------ecCchhh--------ccc
Confidence            6899999999999999999999 999999999988887422                     2222111        113


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEE
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAE  195 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~  195 (321)
                      ++.+..++.+. +.|++|+.++++-
T Consensus       174 ~i~d~~i~~l~-~~Gv~~~~~~~vG  197 (457)
T COG0493         174 DILDRRLELLE-RSGVEFKLNVRVG  197 (457)
T ss_pred             hHHHHHHHHHH-HcCeEEEEcceEC
Confidence            45555566665 5679999887663

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.87  E-value=7.8e-05  Score=69.88  Aligned_cols=108  Identities=19%  Similarity=0.327  Sum_probs=69.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..|||||||.+|+.+|..|.+.+ +.+|+|||+++..         .+..+         |-+.-.     +.    .+.
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---------l~~pl---------L~eva~-----g~----l~~   56 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---------LFTPL---------LYEVAT-----GT----LSE   56 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc---------ccchh---------hhhhhc-----CC----CCh
Confidence            47999999999999999999972 4899999998631         11111         111000     00    011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ......+.+-+....+++++.+ +|++|..++.+|.   +.              +...+..|++|+|.|+...
T Consensus        57 ~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k~V~---~~--------------~~~~i~YD~LVvalGs~~~  112 (405)
T COG1252          57 SEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAKKVT---LA--------------DLGEISYDYLVVALGSETN  112 (405)
T ss_pred             hheeccHHHHhcccCceEEEEE-EEEEEcccCCEEE---eC--------------CCccccccEEEEecCCcCC
Confidence            2222233333332446999888 8999988887654   22              1267899999999997553

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00021  Score=65.00  Aligned_cols=132  Identities=20%  Similarity=0.310  Sum_probs=89.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -||+|||||-+.+-.|+.|++. +.+|.|+-|++....                                          
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~ra------------------------------------------  180 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFRA------------------------------------------  180 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccCc------------------------------------------
Confidence            4999999999999999999998 899999998753210                                          


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                        ...+.+++.+..++++++++.+.++.-++  +.+|+..+.      .    ++...+..+.|.++.|...+..     
T Consensus       181 --~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~------~----~~~~~~~~~gvf~~iG~~p~~~-----  241 (305)
T COG0492         181 --EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV------K----GEEKELPVDGVFIAIGHLPNTE-----  241 (305)
T ss_pred             --CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec------C----CceEEEEeceEEEecCCCCchH-----
Confidence              12445555545589999999999987655  667776531      0    2446899999999999554321     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhc-ccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVR-LTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.+.           .+..+..++. ..+..+||+|++|+.+.
T Consensus       242 ~~~~~~~-----------~~~~g~I~v~~~~~TsvpGifAaGDv~~  276 (305)
T COG0492         242 LLKGLGV-----------LDENGYIVVDEEMETSVPGIFAAGDVAD  276 (305)
T ss_pred             HHhhccc-----------cCCCCcEEcCCCcccCCCCEEEeEeecc
Confidence            1121111           1111111221 25567999999998874

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.86  E-value=0.00033  Score=73.08  Aligned_cols=108  Identities=12%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||..|+-+|..+.+. |.+|+++.+....   .|                                +  ....
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~~~---~m--------------------------------p--a~~~  489 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRTKS---EM--------------------------------P--ARVE  489 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecCcc---cc--------------------------------c--ccHH
Confidence            4799999999999999999999 9999999876310   00                                0  0011


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecce-ecccCC----CCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .     ++.+. +.|+++++.+.++++..++  +++.++.+..... ..+.++    ...++..++.||.||+|.|-..
T Consensus       490 e-----~~~a~-eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p  562 (944)
T PRK12779        490 E-----LHHAL-EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTA  562 (944)
T ss_pred             H-----HHHHH-HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCC
Confidence            1     11222 4699999999999987653  3677765531000 000000    0123456899999999999553

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.82  E-value=0.00016  Score=67.55  Aligned_cols=92  Identities=20%  Similarity=0.295  Sum_probs=60.9

Q ss_pred             ccEEEECCChHHHHHHHHhhc----CCC--CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeE
Q 020815           91 TDVVVVGAGSAGLSCAYELSK----NPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV  164 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G--~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  164 (321)
                      -.|+|||+|.+|+.+|..|++    . |  .+|+|+.. +.+..                       .            
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~-g~~~~V~li~~-~~~l~-----------------------~------------  188 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKR-GLRGQVTLIAG-ASLLP-----------------------G------------  188 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhc-CCCceEEEEeC-Ccccc-----------------------c------------
Confidence            489999999999999999975    3 3  47888832 11100                       0            


Q ss_pred             EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         ....+...+.+.+. +.|++++.++.+.++.  ++   .+.+.              ++.++.+|.||+|+|...
T Consensus       189 ---~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~--~~---~v~~~--------------~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       189 ---FPAKVRRLVLRLLA-RRGIEVHEGAPVTRGP--DG---ALILA--------------DGRTLPADAILWATGARA  243 (364)
T ss_pred             ---CCHHHHHHHHHHHH-HCCCEEEeCCeeEEEc--CC---eEEeC--------------CCCEEecCEEEEccCCCh
Confidence               00123334444444 6899999999988773  33   23332              226799999999999554

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02529 lysine-specific histone demethylase 1

Probab=97.81  E-value=2.4e-05  Score=78.86  Aligned_cols=40  Identities=35%  Similarity=0.636  Sum_probs=36.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..||+|||||++|++||..|++. |++|+|+|+...+||..
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~~  199 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGRV  199 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCce
Confidence            57999999999999999999999 99999999988877654

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=97.77  E-value=2.2e-05  Score=74.57  Aligned_cols=144  Identities=27%  Similarity=0.337  Sum_probs=84.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC--------CCcc-----------------------ccCcccch
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--------GGGA-----------------------WLGGQLFS  138 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~--------gg~~-----------------------~~~g~~~~  138 (321)
                      .||.+|||+|.+|+.+|+.|++. |.+++++-+-...        ||..                       |.+.+...
T Consensus        55 ~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i  133 (642)
T KOG2403|consen   55 TYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI  133 (642)
T ss_pred             eceeEEEeccchhhhhhhhhhhc-CceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence            48999999999999999999999 9999999875321        1111                       11111111


Q ss_pred             hhhcc--chHHHHHHHcCCCcccCCCe---------------------EE----EecHHHHHHHHHHHHHcCCCcEEEcC
Q 020815          139 AMVVR--KPAHIFLDELGIDYDEQDNY---------------------VV----IKHAALFTSTIMSKLLARPNVKLFNA  191 (321)
Q Consensus       139 ~~~~~--~~~~~~l~~~g~~~~~~~~~---------------------~~----~~~~~~~~~~l~~~~~~~~gv~i~~~  191 (321)
                      ..+..  +.....|+.+|.+|....+.                     ..    ..-...+...|+.+.++. +..++..
T Consensus       134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~  212 (642)
T KOG2403|consen  134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE  212 (642)
T ss_pred             hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence            11111  12345667788877543110                     00    011244556666666643 4444444


Q ss_pred             ceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          192 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       192 ~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      .-..+++...+.+.++.....         .+++...++++.+|+|+|++|..
T Consensus       213 yfa~dll~~~g~~~~~va~~~---------~d~~i~~~r~~~ti~a~gg~G~~  256 (642)
T KOG2403|consen  213 YFALDLLMSQGECVGVIALNL---------EDGTIHRFRAKNTILATGGYGRA  256 (642)
T ss_pred             HHHHHHHHhccCceEEEEEEe---------ecccceeeeeeeeEEEEeccceE
Confidence            444455554455555554321         23456889999999999998854

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.75  E-value=3.6e-05  Score=78.16  Aligned_cols=40  Identities=40%  Similarity=0.650  Sum_probs=36.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..+|+|||||++|+++|+.|++. |.+|+|+|+...+||..
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCcc
Confidence            47999999999999999999999 99999999998887653

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.65  E-value=6.6e-05  Score=73.89  Aligned_cols=135  Identities=19%  Similarity=0.247  Sum_probs=87.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      ..+|||||.-|+.+|..|... |.+|.|++=.+..          .         .+.|+               .+   
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~-Gm~~~Vvh~~~~l----------M---------erQLD---------------~~---  188 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDL-GMEVTVVHIAPTL----------M---------ERQLD---------------RT---  188 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhC-CCceEEEeecchH----------H---------HHhhh---------------hH---
Confidence            469999999999999999999 9999999865410          0         00111               01   


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhh
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR  251 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~  251 (321)
                       ...++++..++.|++++.+...+++.. ++++.++...+              +..+.|+.||.|+|-.....     .
T Consensus       189 -ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~D--------------G~~i~ad~VV~a~GIrPn~e-----l  247 (793)
T COG1251         189 -AGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFAD--------------GTEIPADLVVMAVGIRPNDE-----L  247 (793)
T ss_pred             -HHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecC--------------CCcccceeEEEecccccccH-----h
Confidence             123344444578999999877776655 67788888754              37899999999999433221     1


Q ss_pred             hhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       252 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      ..          ..++.+++ ...+..+.+...|.+|+.|.++..
T Consensus       248 a~----------~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~  281 (793)
T COG1251         248 AK----------EAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEH  281 (793)
T ss_pred             HH----------hcCcCcCC-CeeecccccccCCCeeehhhHHHh
Confidence            11          22223333 222234456778888888877643

>PRK13984 putative oxidoreductase; Provisional

Probab=97.65  E-value=0.00088  Score=66.96  Aligned_cols=110  Identities=15%  Similarity=0.259  Sum_probs=67.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC------eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeE
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI------QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV  164 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~------~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  164 (321)
                      -.|+|||||..|+-+|..|++. +.      +|.++.......  .+                        +        
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~-~~~~~g~~~V~v~~~~r~~~--~~------------------------~--------  463 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARL-QKMEYGEVNVKVTSLERTFE--EM------------------------P--------  463 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhc-cccccCceEEEEeccccCcc--cC------------------------C--------
Confidence            4899999999999999999876 43      566653210000  00                        0        


Q ss_pred             EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC-----CCCCceEEEcCeEEEcCC
Q 020815          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~a~~VI~AtG  239 (321)
                        .....+     .++. +.|+++++++.+.++..+++++.++.........+.++.     ..++..++.+|.||+|.|
T Consensus       464 --~~~~e~-----~~~~-~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG  535 (604)
T PRK13984        464 --ADMEEI-----EEGL-EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG  535 (604)
T ss_pred             --CCHHHH-----HHHH-HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeC
Confidence              000111     1222 469999999888888777788888876431111111110     012346899999999999


Q ss_pred             CCCC
Q 020815          240 HDGP  243 (321)
Q Consensus       240 ~~~~  243 (321)
                      ....
T Consensus       536 ~~p~  539 (604)
T PRK13984        536 QAPD  539 (604)
T ss_pred             CCCC
Confidence            5543

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.63  E-value=0.00047  Score=72.63  Aligned_cols=93  Identities=18%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||+|..|+..|..|++. |. .|+|+|..+..                                           
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~~~-------------------------------------------  353 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDARADV-------------------------------------------  353 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccCcch-------------------------------------------
Confidence            4899999999999999999998 84 68899876321                                           


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         ...+.+++. +.||+++.++.++++.. ++++.+|....          .+++..++.||.|+++.|-..
T Consensus       354 ---~~~l~~~L~-~~GV~i~~~~~v~~i~g-~~~v~~V~l~~----------~~g~~~~i~~D~V~va~G~~P  411 (985)
T TIGR01372       354 ---SPEARAEAR-ELGIEVLTGHVVAATEG-GKRVSGVAVAR----------NGGAGQRLEADALAVSGGWTP  411 (985)
T ss_pred             ---hHHHHHHHH-HcCCEEEcCCeEEEEec-CCcEEEEEEEe----------cCCceEEEECCEEEEcCCcCc
Confidence               001234444 67999999999988864 44566666531          012347899999999999444

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.60  E-value=0.0016  Score=65.51  Aligned_cols=108  Identities=15%  Similarity=0.151  Sum_probs=69.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||+|..|+-+|..+.+. | .+|+++++.....   +.                                  ...
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~-Ga~~Vt~v~rr~~~~---~~----------------------------------~~~  493 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRL-NAASVTCAYRRDEVS---MP----------------------------------GSR  493 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence            4899999999999999888887 7 4799998763210   00                                  000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .++     ..+. +.|+++++.+.++++..+ ++++.++.+...... .+.++.     ..++..++.+|.||+|.|...
T Consensus       494 ~e~-----~~a~-~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p  567 (639)
T PRK12809        494 KEV-----VNAR-EEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA  567 (639)
T ss_pred             HHH-----HHHH-HcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence            111     1222 579999999999998764 577887765321000 000000     123456899999999999544

>PLN03000 amine oxidase

Probab=97.56  E-value=9.1e-05  Score=75.47  Aligned_cols=41  Identities=34%  Similarity=0.684  Sum_probs=38.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      ..||+|||||++|+.+|+.|.+. |++|+|+|++..+||.++
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCCcc
Confidence            58999999999999999999999 999999999999988664

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.56  E-value=0.00076  Score=62.36  Aligned_cols=134  Identities=19%  Similarity=0.183  Sum_probs=78.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc------------c----hHHHHHHHc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR------------K----PAHIFLDEL  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~------------~----~~~~~l~~~  153 (321)
                      .+|+|.||-||.-|+.|+.|.+..+.+++.+||.+..   .|..|.+.......            +    .-+.+|.+.
T Consensus         5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F---~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h   81 (436)
T COG3486           5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF---SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH   81 (436)
T ss_pred             ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC---CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence            5899999999999999999999646899999998654   26655543221111            0    123444444


Q ss_pred             CCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEE--EEEeecceecccCCCCCCCceEEE
Q 020815          154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGG--VVTNWALVSMNHDTQSCMDPNVME  230 (321)
Q Consensus       154 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~g--v~~~~~~~~~~~~~~~~g~~~~i~  230 (321)
                      +--+.-..--.......+|.+++. .+.... -.++++++|++|..-+ +....  +.+.              +..+++
T Consensus        82 ~RLy~Fl~~e~f~i~R~Ey~dY~~-Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~--------------~~~~y~  145 (436)
T COG3486          82 GRLYEFLNYETFHIPRREYNDYCQ-WAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTA--------------NGTVYR  145 (436)
T ss_pred             chHhhhhhhhcccccHHHHHHHHH-HHHhhC-CccccCCeeccccccCCcceeEEEEEcC--------------CCcEEE
Confidence            421111100011123345555543 333233 6788899999773322 22222  2322              225899


Q ss_pred             cCeEEEcCCCCC
Q 020815          231 AKVVVSSCGHDG  242 (321)
Q Consensus       231 a~~VI~AtG~~~  242 (321)
                      |+.+|+.+|...
T Consensus       146 ar~lVlg~G~~P  157 (436)
T COG3486         146 ARNLVLGVGTQP  157 (436)
T ss_pred             eeeEEEccCCCc
Confidence            999999999654

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.52  E-value=0.00017  Score=67.88  Aligned_cols=30  Identities=37%  Similarity=0.563  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815          100 SAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus       100 ~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ++||+||++|++. |.+|+|+|+++.+||.+
T Consensus         1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr~   30 (450)
T PF01593_consen    1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGRI   30 (450)
T ss_dssp             HHHHHHHHHHHHT-TTEEEEEESSSSSBTTS
T ss_pred             ChHHHHHHHHHhC-CCCEEEEEcCCCCCcce
Confidence            5899999999999 99999999999999876

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00042  Score=62.25  Aligned_cols=104  Identities=18%  Similarity=0.295  Sum_probs=63.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc--------h----HHHHHHHcCCCc-
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK--------P----AHIFLDELGIDY-  157 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~--------~----~~~~l~~~g~~~-  157 (321)
                      ..|-|||||.||..+|+++++. |++|.|.|-++.-+-.....+. +..+++..        .    ....++.+|--. 
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k~TpaH~td~-fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii   81 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVKGTPAHKTDN-FAELVCSNSLRSDALTNAVGLLKAEMRLLGSLII   81 (439)
T ss_pred             CceEEEcccccccHHHHHHHHc-CCcEEEEEcccccCCCcccccc-hhhheeccccccchhhhhhHHHHHHHHHhhhHHh
Confidence            4689999999999999999999 9999999976543322111111 11111110        0    112333333211 


Q ss_pred             --cc---C-CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          158 --DE---Q-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       158 --~~---~-~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                        .+   . .+..+..+...|.+.+-+++.+++.|+++.+ +|++|
T Consensus        82 ~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i  126 (439)
T COG1206          82 EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI  126 (439)
T ss_pred             hhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence              00   0 1223344567788888899988899999877 56555

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.49  E-value=0.00014  Score=68.36  Aligned_cols=41  Identities=39%  Similarity=0.589  Sum_probs=36.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ...|||||||.|||+||.+|-+.+..+|+|+|..+.+||..
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI   61 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence            45899999999999999999976478999999999998754

>PLN02976 amine oxidase

Probab=97.46  E-value=0.00015  Score=76.83  Aligned_cols=42  Identities=31%  Similarity=0.632  Sum_probs=37.9

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      ..+||+|||||++|+.+|+.|.+. |++|+|||+...+||..+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGri~  733 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGRVY  733 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCcee
Confidence            358999999999999999999999 999999999988887643

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.39  E-value=0.00016  Score=66.96  Aligned_cols=41  Identities=39%  Similarity=0.633  Sum_probs=34.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~  130 (321)
                      ..+|+|||||++||++||+|++. |...++|+|+.+..||..
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi   52 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI   52 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence            46999999999999999999996 234567799999998843

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.37  E-value=0.004  Score=60.59  Aligned_cols=123  Identities=16%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+-+|..+.+..+.+|.++|..+.......                   ....+     ..+.   ...
T Consensus       284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~-------------------~~~~~-----~~~~---~~~  336 (485)
T TIGR01317       284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARA-------------------KDNPW-----PEWP---RVY  336 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcc-------------------cccCC-----Cccc---hhh
Confidence            47999999999999988877762457999998643210000                   00000     0000   000


Q ss_pred             HHHHHHHHHHHcCCCcEE-EcCceEEEEEEEC-CEEEEEEEeecceecccCCC-----CCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKL-FNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i-~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +. ....++..+..|+++ ++.+.+.++..++ +++.++.+.......+.++.     ..++..++.+|.||+|.|..
T Consensus       337 e~-~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~  413 (485)
T TIGR01317       337 RV-DYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV  413 (485)
T ss_pred             hh-HHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence            11 112233322356654 4566777876553 68888765321000011110     12344689999999999954

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.34  E-value=0.0016  Score=60.30  Aligned_cols=134  Identities=17%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCC--ccccCcccchhh-----hccc-hH-HHHHHHcC-CCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG--GAWLGGQLFSAM-----VVRK-PA-HIFLDELG-IDYD  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg--~~~~~g~~~~~~-----~~~~-~~-~~~l~~~g-~~~~  158 (321)
                      ...|+|||||.++..++..|.+. +..+|.++-|+...--  .+-....++..-     ...+ .. .+.+.+.. ..  
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n--  267 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN--  267 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT--
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc--
Confidence            57999999999999999999986 1358999998753210  000000011110     0000 01 12222221 11  


Q ss_pred             cCCCeEEEec--HHHHHHHHHH-HHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815          159 EQDNYVVIKH--AALFTSTIMS-KLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (321)
Q Consensus       159 ~~~~~~~~~~--~~~~~~~l~~-~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V  234 (321)
                          +..+..  -..+.+.+++ ++.....++++.+++|+++..++ +++. +.+..      .   ..++..++.+|.|
T Consensus       268 ----y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~------~---~~~~~~~~~~D~V  333 (341)
T PF13434_consen  268 ----YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRH------R---QTGEEETLEVDAV  333 (341)
T ss_dssp             ----SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEE------T---TT--EEEEEESEE
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEE------C---CCCCeEEEecCEE
Confidence                111111  1222233333 33334568999999999999887 3433 22221      1   1224578999999


Q ss_pred             EEcCC
Q 020815          235 VSSCG  239 (321)
Q Consensus       235 I~AtG  239 (321)
                      |+|||
T Consensus       334 ilATG  338 (341)
T PF13434_consen  334 ILATG  338 (341)
T ss_dssp             EE---
T ss_pred             EEcCC
Confidence            99999

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.33  E-value=0.002  Score=67.11  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||||..|+-+|..+.+.+| .+|.|+.++....   +                        +          ...
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~---M------------------------P----------A~~  711 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE---M------------------------P----------AWR  711 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc---c------------------------c----------ccH
Confidence            489999999999999998887635 4899999864200   0                        0          001


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC----CCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT----QSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~----~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..     ++.+. +.|++++..+.+.++.. ++++.......+.  .+..+    ...++..++.+|.||+|+|...
T Consensus       712 eE-----le~Al-eeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~--~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~P  779 (1019)
T PRK09853        712 EE-----YEEAL-EDGVEFKELLNPESFDA-DGTLTCRVMKLGE--PDESGRRRPVETGETVTLEADTVITAIGEQV  779 (1019)
T ss_pred             HH-----HHHHH-HcCCEEEeCCceEEEEc-CCcEEEEEEEeec--ccCCCceEEeeCCCeEEEEeCEEEECCCCcC
Confidence            11     12222 35899999888888753 4443322111000  00000    0112457899999999999554

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.30  E-value=0.01  Score=57.63  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=38.8

Q ss_pred             CCcEEEcCceEEEEEEE---CCEEEEEEEeecceeccc-CC----CCCCCceEEEcCeEEEcCCCCC
Q 020815          184 PNVKLFNAVAAEDLIVK---GGRVGGVVTNWALVSMNH-DT----QSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       184 ~gv~i~~~~~v~~l~~~---~~~v~gv~~~~~~~~~~~-~~----~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .++.+++...-++|+.+   +++|.++++.......+. .+    ..+++..++.+|.||.|.|..+
T Consensus       288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~  354 (491)
T PLN02852        288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS  354 (491)
T ss_pred             ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence            47889988888888742   268999888642211110 00    1134567899999999999654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.28  E-value=0.0076  Score=63.03  Aligned_cols=106  Identities=15%  Similarity=0.236  Sum_probs=63.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .-.|+|||||..|+-+|..+.+.+|. +|.||++.....   .                        +          ..
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~---M------------------------p----------a~  708 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY---M------------------------P----------AS  708 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc---c------------------------c----------cC
Confidence            34899999999999999988874364 899999864200   0                        0          00


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC----CCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT----QSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~----~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ...     ++.+. +.|++++..+.+.++.  ++++.......+  ..+.++    ..+++..++.+|.||+|.|...
T Consensus       709 ~eE-----l~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~--~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~P  776 (1012)
T TIGR03315       709 REE-----LEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLG--EPDASGRRRPVGTGETVDLPADTVIAAVGEQV  776 (1012)
T ss_pred             HHH-----HHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEee--cccCCCceeeecCCCeEEEEeCEEEEecCCcC
Confidence            011     12222 3689999888877775  454433221100  000000    0123456899999999999553

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=97.27  E-value=0.0014  Score=58.17  Aligned_cols=36  Identities=28%  Similarity=0.490  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcC------CCCeEEEEeccCCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN------PNIQIAIIEQSVSP  126 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~------~G~~V~liEk~~~~  126 (321)
                      .+|+|||+|..||++|+.+.+.      |-.+|.+++-...+
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e   45 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE   45 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence            5899999999999999776652      35788988765544

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0047  Score=57.06  Aligned_cols=40  Identities=25%  Similarity=0.351  Sum_probs=36.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|||+|+|-|..=+..+..|+.. |.+|+.+||++..||..
T Consensus         4 eyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~s   43 (440)
T KOG1439|consen    4 EYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGES   43 (440)
T ss_pred             ceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCccc
Confidence            59999999999999999999999 99999999999887653

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.51  E-value=0.01  Score=51.88  Aligned_cols=32  Identities=44%  Similarity=0.783  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHhhc-CCCCeEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~  124 (321)
                      .+|||||+||.+||-+|+. .|...++||...+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            6899999999999999998 3578999998865

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.49  E-value=0.027  Score=52.66  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=62.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcC---------C----CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN---------P----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY  157 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~---------~----G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~  157 (321)
                      ..+|||||||.|...|.+|+..         |    .++|++||..+.+                    ..+++      
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------------------L~mFd------  272 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------------------LNMFD------  272 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------------------HHHHH------
Confidence            5899999999999999998741         1    4678888876421                    00111      


Q ss_pred             ccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                                  ..+.....++. ++.++++..++.|.++.  +..+ -+.+            .+|+..+|..-.+|.|
T Consensus       273 ------------krl~~yae~~f-~~~~I~~~~~t~Vk~V~--~~~I-~~~~------------~~g~~~~iPYG~lVWa  324 (491)
T KOG2495|consen  273 ------------KRLVEYAENQF-VRDGIDLDTGTMVKKVT--EKTI-HAKT------------KDGEIEEIPYGLLVWA  324 (491)
T ss_pred             ------------HHHHHHHHHHh-hhccceeecccEEEeec--CcEE-EEEc------------CCCceeeecceEEEec
Confidence                        22333333333 47899999999888773  2221 1222            1235577888899999


Q ss_pred             CCCCC
Q 020815          238 CGHDG  242 (321)
Q Consensus       238 tG~~~  242 (321)
                      ||-..
T Consensus       325 tG~~~  329 (491)
T KOG2495|consen  325 TGNGP  329 (491)
T ss_pred             CCCCC
Confidence            99544

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.44  E-value=0.017  Score=53.72  Aligned_cols=98  Identities=13%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCC---CCeEE-EEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEE
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNP---NIQIA-IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~-liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  166 (321)
                      -.|-|||.|..|...|+.|.++.   |.+|. |+|....                    +.+.                 
T Consensus       348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n--------------------m~ki-----------------  390 (659)
T KOG1346|consen  348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN--------------------MEKI-----------------  390 (659)
T ss_pred             ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC--------------------hhhh-----------------
Confidence            47899999999999999998741   33332 2222100                    0000                 


Q ss_pred             ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       -...+.++-+++++ +.|++++.+..|..+....+.+. ++.+              ++.+++.|.||+|+|-..
T Consensus       391 -LPeyls~wt~ekir-~~GV~V~pna~v~sv~~~~~nl~-lkL~--------------dG~~l~tD~vVvavG~eP  449 (659)
T KOG1346|consen  391 -LPEYLSQWTIEKIR-KGGVDVRPNAKVESVRKCCKNLV-LKLS--------------DGSELRTDLVVVAVGEEP  449 (659)
T ss_pred             -hHHHHHHHHHHHHH-hcCceeccchhhhhhhhhccceE-EEec--------------CCCeeeeeeEEEEecCCC
Confidence             01234455567776 68999999988887765443322 2222              347899999999999654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.36  E-value=0.0064  Score=58.70  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||+|.+|+-.|..|++. +.+|.|+.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKV-AKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence            35799999999999999999998 89999999864

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.015  Score=53.33  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=37.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..|||+|+|.|+.-+..+..|+.. |.+|+.||+++..|+..
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~~   45 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGSTS   45 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCccc
Confidence            369999999999999999999999 99999999999887654

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.98  E-value=0.022  Score=53.92  Aligned_cols=102  Identities=13%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccC--CCeEE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ--DNYVV  165 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~  165 (321)
                      ...++|||+|++|..|+..+.+. |  -+.+|+-+...                             +++++.  .....
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~-g~~~ri~l~~~~~~-----------------------------~pydr~~Ls~~~~  123 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQV-GFTERIALVKREYL-----------------------------LPYDRARLSKFLL  123 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhh-CCCcceEEEecccc-----------------------------Ccccchhccccee
Confidence            45899999999999999999886 3  35555544321                             111110  00000


Q ss_pred             EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          166 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      .. ...+.....+.. ++.++++++++.|+.+...+..+   .+.              +++++..+.+|+|||.
T Consensus       124 ~~-~~~~a~r~~e~Y-ke~gIe~~~~t~v~~~D~~~K~l---~~~--------------~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  124 TV-GEGLAKRTPEFY-KEKGIELILGTSVVKADLASKTL---VLG--------------NGETLKYSKLIIATGS  179 (478)
T ss_pred             ec-cccccccChhhH-hhcCceEEEcceeEEeeccccEE---EeC--------------CCceeecceEEEeecC
Confidence            00 011111111112 36799999999999998877643   232              3488999999999997

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.67  E-value=0.042  Score=50.17  Aligned_cols=141  Identities=15%  Similarity=0.212  Sum_probs=85.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..++..|--++-. |-++-|+=|...+                       |+.    |+           .
T Consensus       190 kr~vvvGaGYIavE~Agi~~gL-gsethlfiR~~kv-----------------------LR~----FD-----------~  230 (478)
T KOG0405|consen  190 KRVVVVGAGYIAVEFAGIFAGL-GSETHLFIRQEKV-----------------------LRG----FD-----------E  230 (478)
T ss_pred             ceEEEEccceEEEEhhhHHhhc-CCeeEEEEecchh-----------------------hcc----hh-----------H
Confidence            3789999998888888777777 7787777665421                       100    00           2


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+++. ..|++++.++.+++++..++....+.+..              ......|.++.|+|.....-     
T Consensus       231 ~i~~~v~~~~~-~~ginvh~~s~~~~v~K~~~g~~~~i~~~--------------~~i~~vd~llwAiGR~Pntk-----  290 (478)
T KOG0405|consen  231 MISDLVTEHLE-GRGINVHKNSSVTKVIKTDDGLELVITSH--------------GTIEDVDTLLWAIGRKPNTK-----  290 (478)
T ss_pred             HHHHHHHHHhh-hcceeecccccceeeeecCCCceEEEEec--------------cccccccEEEEEecCCCCcc-----
Confidence            23344445554 78999999999999988655333333321              13344899999999432211     


Q ss_pred             hhhhcCCcccccCCceeecccccchhh-cccccccccccccccchhhcC
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIV-RLTREVVPGMIVTGMEVAEID  298 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~~~g~~~~~~~  298 (321)
                         +++     -...+..++.....++ .+.+..+|+++..|+.+..+.
T Consensus       291 ---~L~-----le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~  331 (478)
T KOG0405|consen  291 ---GLN-----LENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN  331 (478)
T ss_pred             ---ccc-----chhcceeeCCCCCEEEeccccCCCCceEEeccccCcEe
Confidence               111     1122333333332223 467788999999998876654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.41  E-value=0.074  Score=48.06  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~  124 (321)
                      ++.|+|||||.+|+..|..+.++ +.-+|.|||...
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            78999999999999999999874 345899999754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.10  E-value=0.32  Score=45.43  Aligned_cols=138  Identities=17%  Similarity=0.229  Sum_probs=71.2

Q ss_pred             EEEECCChHHHHHHHHhhcC-CC--CeEEEEeccCCC--CCccccCcccchhh-----h-ccchH-HHHHHHcCCCcccC
Q 020815           93 VVVVGAGSAGLSCAYELSKN-PN--IQIAIIEQSVSP--GGGAWLGGQLFSAM-----V-VRKPA-HIFLDELGIDYDEQ  160 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~-~G--~~V~liEk~~~~--gg~~~~~g~~~~~~-----~-~~~~~-~~~l~~~g~~~~~~  160 (321)
                      |.|||+|-++..+-+.|-.. +.  .++..|-|+...  -..+-.+-..+...     . ...+. .+.+.+.+..++..
T Consensus       190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI  269 (436)
T COG3486         190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGI  269 (436)
T ss_pred             EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccccc
Confidence            99999999999998887652 12  235556665421  01000000011000     0 00111 12233333222211


Q ss_pred             CCeEEEecHHHHHHHHHHHHHc--CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          161 DNYVVIKHAALFTSTIMSKLLA--RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~~--~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      .    ..--.++...|+++-..  ++++.++..+++..++..++.-.-+.+..      .   ..++..+++.|.||+||
T Consensus       270 ~----~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~------~---~~~~~~t~~~D~vIlAT  336 (436)
T COG3486         270 S----FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH------H---ETGELETVETDAVILAT  336 (436)
T ss_pred             C----HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEee------c---cCCCceEEEeeEEEEec
Confidence            0    01123444555555332  46799999999999987654212222211      1   22356889999999999


Q ss_pred             CCCCC
Q 020815          239 GHDGP  243 (321)
Q Consensus       239 G~~~~  243 (321)
                      |-.-.
T Consensus       337 GY~~~  341 (436)
T COG3486         337 GYRRA  341 (436)
T ss_pred             ccccC
Confidence            96643

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.76  E-value=0.037  Score=45.24  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      |.|||||..|.++|..|+++ |.+|.|+.+..
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            78999999999999999999 99999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.65  E-value=0.046  Score=45.80  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      |.|||+|..|...|..++.. |++|.++|.++
T Consensus         2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            78999999999999999999 99999999874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.52  E-value=0.053  Score=43.69  Aligned_cols=31  Identities=23%  Similarity=0.502  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      |+|+|+|..|+..|+.|++. |.+|.++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence            68999999999999999998 99999999874

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.50  E-value=0.046  Score=53.06  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|||+|.+|+++|..|.+. |.+|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLEL-GARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            3799999999999999999999 99999999754

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.35  E-value=0.063  Score=45.33  Aligned_cols=34  Identities=32%  Similarity=0.579  Sum_probs=28.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||+|.++.-+|+.|++. |.+|.++-|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            46899999999999999999999 89999998875

...

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.25  E-value=0.053  Score=52.31  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      .|+|||.|++|+++|..|.+. |.+|.+.|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence            489999999999999999999 999999998654

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.25  E-value=0.051  Score=50.54  Aligned_cols=40  Identities=25%  Similarity=0.310  Sum_probs=37.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|||||||.|.--...|.+.++. |.+|+=+|++...||.+
T Consensus         8 ~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg~w   47 (547)
T KOG4405|consen    8 EFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGGNW   47 (547)
T ss_pred             hccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCCcc
Confidence            69999999999999999999999 99999999999888764

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=94.18  E-value=0.13  Score=47.45  Aligned_cols=39  Identities=31%  Similarity=0.453  Sum_probs=33.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~  129 (321)
                      ..+-|||+|.|||++|..|-|.   .|.++-|+|.-+..||+
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS   64 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS   64 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence            4688999999999999999874   27899999998877765

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.09  E-value=0.062  Score=46.73  Aligned_cols=32  Identities=31%  Similarity=0.617  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +++|||+|..|...|..|.+. |..|++||+..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence            589999999999999999999 99999999865

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.09  E-value=0.22  Score=49.01  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-+|+|||+|.+|+-.|.+|++. ..+|.+.-|..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~  216 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRG  216 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC--
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEecc
Confidence            45899999999999999999998 88999888764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.86  E-value=0.34  Score=46.23  Aligned_cols=47  Identities=9%  Similarity=0.010  Sum_probs=32.0

Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEE--cCeEEEcCCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKVVVSSCGHDG  242 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--a~~VI~AtG~~~  242 (321)
                      ++.|++++.+++|+.+..+++.+.   +..      .     ++..++.  +|+||+|||...
T Consensus        55 ~~~gv~~~~~~~V~~id~~~~~v~---~~~------~-----~~~~~~~~~yd~lIiATG~~p  103 (427)
T TIGR03385        55 KKRGIDVKTNHEVIEVNDERQTVV---VRN------N-----KTNETYEESYDYLILSPGASP  103 (427)
T ss_pred             HhcCCeEEecCEEEEEECCCCEEE---EEE------C-----CCCCEEecCCCEEEECCCCCC
Confidence            367999998889999876665432   211      0     0124566  999999999754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.85  E-value=0.16  Score=46.35  Aligned_cols=100  Identities=20%  Similarity=0.295  Sum_probs=65.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      .-+|||||-.+|.||-.|+-. |+.|++.=|.-...|                            |           .++
T Consensus       200 kTLvVGa~YVaLECAgFL~gf-g~~vtVmVRSI~LrG----------------------------F-----------Dqd  239 (503)
T KOG4716|consen  200 KTLVVGAGYVALECAGFLKGF-GYDVTVMVRSILLRG----------------------------F-----------DQD  239 (503)
T ss_pred             ceEEEccceeeeehhhhHhhc-CCCcEEEEEEeeccc----------------------------c-----------cHH
Confidence            579999999999999999999 999998887632211                            1           134


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +.+.+.+.+. +.|+++...+..+.++.- +++ .-|...      +..++   +...-..+.|+.|.|..+
T Consensus       240 mae~v~~~m~-~~Gikf~~~~vp~~Veq~~~g~-l~v~~k------~t~t~---~~~~~~ydTVl~AiGR~~  300 (503)
T KOG4716|consen  240 MAELVAEHME-ERGIKFLRKTVPERVEQIDDGK-LRVFYK------NTNTG---EEGEEEYDTVLWAIGRKA  300 (503)
T ss_pred             HHHHHHHHHH-HhCCceeecccceeeeeccCCc-EEEEee------ccccc---ccccchhhhhhhhhcccc
Confidence            4455555554 679999988877777764 443 222221      11111   223344578999999544

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=93.74  E-value=0.41  Score=48.01  Aligned_cols=108  Identities=17%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-C-CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-P-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~-G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      -.++|||.|++|..+.-++.+. | -..++++-..+.+.=..    ...+..+...                      ..
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R----i~Ls~vl~~~----------------------~~   57 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR----ILLSSVLAGE----------------------KT   57 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc----eeeccccCCC----------------------cc
Confidence            4699999999999999888772 1 46777775543221000    0001011000                      01


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..++...-.+... ++|++++.+.+|+.|..++..|+   +.              .+.++..|.+|+|||.+.
T Consensus        58 ~edi~l~~~dwy~-~~~i~L~~~~~v~~idr~~k~V~---t~--------------~g~~~~YDkLilATGS~p  113 (793)
T COG1251          58 AEDISLNRNDWYE-ENGITLYTGEKVIQIDRANKVVT---TD--------------AGRTVSYDKLIIATGSYP  113 (793)
T ss_pred             HHHHhccchhhHH-HcCcEEEcCCeeEEeccCcceEE---cc--------------CCcEeecceeEEecCccc
Confidence            1222212122333 68999999999999977665332   22              237888999999999554

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.58  E-value=0.28  Score=46.00  Aligned_cols=107  Identities=18%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             EEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           93 VVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      ++|||+|.+|+.+|..|.+. +..++.++...........   ....          ++   +....         ....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~---~~~~----------~~---~~~~~---------~~~~   55 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRC---PLSL----------YV---GGGIA---------SLED   55 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCC---ccch----------HH---hcccC---------CHHH
Confidence            58999999999999988772 3677877776643221100   0000          00   00000         0000


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +..... .. ...+++++.++.|+.+..+...+.   +.              + ..+..|++|+|+|.....
T Consensus        56 ~~~~~~-~~-~~~~i~~~~~~~v~~id~~~~~v~---~~--------------~-g~~~yd~LvlatGa~~~~  108 (415)
T COG0446          56 LRYPPR-FN-RATGIDVRTGTEVTSIDPENKVVL---LD--------------D-GEIEYDYLVLATGARPRP  108 (415)
T ss_pred             hcccch-hH-HhhCCEEeeCCEEEEecCCCCEEE---EC--------------C-CcccccEEEEcCCCcccC
Confidence            000000 11 256899999999999876665432   21              1 278899999999976643

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.48  E-value=0.084  Score=44.43  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=26.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|+.+|..|++. |++|+.+|.+.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence            489999999999999999999 99999999874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.44  E-value=0.11  Score=39.22  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|+|||||..|..-+..|.+. |.+|+|+.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence            45899999999999999999999 9999999987

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=93.35  E-value=1  Score=47.23  Aligned_cols=58  Identities=17%  Similarity=0.103  Sum_probs=39.5

Q ss_pred             CCCcEEEcCceEEEEEEE-CCEEEEEEEeecce----ecc--cC----------CCCCCCceEEEcCeEEEcCCC
Q 020815          183 RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV----SMN--HD----------TQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~----~~~--~~----------~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      +.||++.+.....+++.+ ++++.++++.....    ...  ..          ....+...++.||.||+|.|-
T Consensus       652 eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~  726 (1028)
T PRK06567        652 ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI  726 (1028)
T ss_pred             HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence            679999999999999876 58999988764210    000  00          001113478999999999994

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.89  E-value=0.15  Score=43.64  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|||||.+|..-+..|.+. |.+|+|++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            4799999999999999999999 9999999875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.85  E-value=0.13  Score=46.89  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +|.|||+|..|...|..|++. |.+|+++|+..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence            699999999999999999999 99999999874

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.74  E-value=0.14  Score=49.19  Aligned_cols=33  Identities=33%  Similarity=0.480  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|||+|..|+.+|..|++. |++|+++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            4799999999999999999999 99999999864

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.62  E-value=0.18  Score=41.57  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|+|+|.+|..||..|... |.+|+++|...
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence            5899999999999999999999 99999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=92.53  E-value=0.22  Score=39.56  Aligned_cols=33  Identities=30%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCe-EEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~  123 (321)
                      ...++|||+|.+|-.++.+|.+. |.+ +.|+.|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            46899999999999999999999 876 9999886

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.39  E-value=0.21  Score=40.83  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .-.|+|||||..|..-+..|.+. |.+|+||.+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp~   45 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVSPE   45 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCc
Confidence            45899999999999999999998 9999999643

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.35  E-value=0.2  Score=42.67  Aligned_cols=33  Identities=21%  Similarity=0.498  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            56899999999999999999999 88 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=92.21  E-value=1.9  Score=40.80  Aligned_cols=117  Identities=15%  Similarity=0.150  Sum_probs=66.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ...|||+|.|-+|++..-.|-.. -++|+||..++..         .+.+++...              ..+    ..+.
T Consensus        55 Kk~vVVLGsGW~a~S~lk~ldts-~YdV~vVSPRnyF---------lFTPLLpS~--------------~vG----Tve~  106 (491)
T KOG2495|consen   55 KKRVVVLGSGWGAISLLKKLDTS-LYDVTVVSPRNYF---------LFTPLLPST--------------TVG----TVEL  106 (491)
T ss_pred             CceEEEEcCchHHHHHHHhcccc-ccceEEeccccce---------EEeeccCCc--------------ccc----ceee
Confidence            46899999999999999888777 7999999987531         111111000              000    1122


Q ss_pred             HHHHHHHHHHHHcCC-CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          170 ALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +.+.+.+..-..+.. ++++++. +..++..++++|.--.+..     +..    .....+..|++|+|+|+....
T Consensus       107 rSIvEPIr~i~r~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~-----~~~----~~e~~i~YDyLViA~GA~~~T  172 (491)
T KOG2495|consen  107 RSIVEPIRAIARKKNGEVKYLEA-ECTKIDPDNKKVHCRSLTA-----DSS----DKEFVIGYDYLVIAVGAEPNT  172 (491)
T ss_pred             hhhhhhHHHHhhccCCCceEEec-ccEeecccccEEEEeeecc-----CCC----cceeeecccEEEEeccCCCCC
Confidence            344444444343333 5566554 6666665555443221111     000    123678899999999987643

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.19  E-value=0.19  Score=45.39  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++|.+.
T Consensus         5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            599999999999999999999 99999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.01  E-value=0.23  Score=42.42  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|+|||||-.|...|..|.+. |.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence            45899999999999999999999 9999999864

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.95  E-value=0.21  Score=46.82  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..+|+|||+|.+|+.+|..|.+. |.+|.++|+..
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            46799999999999999999999 99999999853

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.93  E-value=0.2  Score=45.25  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..+++. |++|+++|..+
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~   38 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTE   38 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            699999999999999999999 99999999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.87  E-value=0.29  Score=37.38  Aligned_cols=31  Identities=29%  Similarity=0.561  Sum_probs=28.0

Q ss_pred             EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      |+|+|.|..|...+..|.+. +.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence            68999999999999999997 88999999975

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.84  E-value=0.23  Score=45.22  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +|+|||+|..|...|..|++. |.+|.++.+..
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence            699999999999999999999 99999999863

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.75  E-value=0.2  Score=45.17  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++|+++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence            489999999999999999999 99999999874

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.72  E-value=0.26  Score=43.97  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~  124 (321)
                      ....|+|||.|..|..+|..|++. | .+++|+|...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence            357999999999999999999999 7 6899999864

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.59  E-value=0.18  Score=45.46  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .-+|+|||||.+|.-+|.-+... |.+|+|+|.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n  200 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN  200 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence            46999999999999999999988 9999999987

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.47  E-value=0.25  Score=45.36  Aligned_cols=32  Identities=9%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..++.. |++|.++|..+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=91.47  E-value=0.31  Score=44.51  Aligned_cols=33  Identities=15%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|||+|..|...|..|++. |.+|.++.++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            3699999999999999999999 99999999864

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=91.16  E-value=0.27  Score=44.57  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEec
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk  122 (321)
                      .|+|||+|..|...|..|++. |.+|.++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence            489999999999999999999 999999988

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.16  E-value=0.29  Score=38.69  Aligned_cols=33  Identities=24%  Similarity=0.653  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..|+|||+|..|...|..|++. |. ++.|+|...
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence            5799999999999999999998 76 799999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.12  E-value=0.29  Score=44.28  Aligned_cols=31  Identities=16%  Similarity=0.414  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .|+|||+|..|...|..|++. |.+|.++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            489999999999999999999 9999999984

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=90.99  E-value=0.26  Score=48.00  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|+|+|++|+.++..+... |.+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46899999999999999999888 99999999864

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.96  E-value=0.32  Score=43.96  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++|++.
T Consensus         6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            699999999999999999999 99999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.96  E-value=0.29  Score=44.26  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++|+.+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            599999999999999999999 99999999864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=90.91  E-value=0.33  Score=44.29  Aligned_cols=32  Identities=31%  Similarity=0.516  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~  124 (321)
                      .|.|||+|..|.++|+.|++. |  ..+.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence            589999999999999999998 7  5899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.61  E-value=0.38  Score=44.53  Aligned_cols=34  Identities=24%  Similarity=0.561  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus        24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence            46899999999999999999999 87 899999863

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.60  E-value=0.35  Score=45.94  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|+|.|+.|+.+|..|... |.+|+++|..+
T Consensus       202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence            35899999999999999999988 99999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.44  E-value=0.5  Score=39.11  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             CcccEEEECCCh-HHHHHHHHhhcCCCCeEEEEecc
Q 020815           89 ADTDVVVVGAGS-AGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        89 ~~~DVvIIGgG~-aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ....|+|||+|- +|..+|..|.+. |.+|.++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence            357999999996 699999999998 8999999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.37  E-value=0.32  Score=43.66  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..+++. |.+|+++|.++
T Consensus         5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence            599999999999999999999 99999999764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.35  E-value=0.39  Score=41.80  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC---eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI---QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~---~V~liEk~~  124 (321)
                      +..++|+|+|.+|..+|..|.+. |.   ++.|+++..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence            45899999999999999999998 87   499999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.35  E-value=0.37  Score=43.44  Aligned_cols=32  Identities=31%  Similarity=0.479  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ..|+|||+|.+|.++|+.|++. |. +|.|+++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            4799999999999999999998 76 79999886

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.32  E-value=0.4  Score=44.36  Aligned_cols=34  Identities=29%  Similarity=0.553  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            46899999999999999999999 87 899999864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.28  E-value=0.52  Score=43.28  Aligned_cols=34  Identities=18%  Similarity=0.427  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~  125 (321)
                      ..|.|||+|..|...|+.++.. |+ ++.|+|..+.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence            4799999999999999999988 75 8999998654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.03  E-value=0.49  Score=40.37  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      +..|+|||.|..|..+|..|++. |. +++|+|...
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence            57899999999999999999999 86 899999863

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=89.82  E-value=0.4  Score=38.18  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ++|+|+|+.+...+..+... |++|+++|.++.
T Consensus         1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence            58999999999999999999 999999998753

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.78  E-value=0.53  Score=37.54  Aligned_cols=31  Identities=29%  Similarity=0.583  Sum_probs=28.4

Q ss_pred             EEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      |+|||.|..|...|..|++. |. ++.|+|...
T Consensus         2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~   33 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT   33 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence            89999999999999999999 76 799999864

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.72  E-value=0.5  Score=39.32  Aligned_cols=31  Identities=26%  Similarity=0.497  Sum_probs=28.3

Q ss_pred             EEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      |+|||+|..|...|..|++. |. ++.|+|...
T Consensus         2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~   33 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV   33 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence            89999999999999999999 87 599999864

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.58  E-value=0.66  Score=42.51  Aligned_cols=34  Identities=38%  Similarity=0.642  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      ...|.|||+|..|.++|+.|+.. ++  .+.|+|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence            45899999999999999999988 66  799999754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.50  E-value=0.48  Score=44.49  Aligned_cols=31  Identities=32%  Similarity=0.583  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-CeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~  123 (321)
                      +|+|||+|-.|..+|..|+++ + .+|+|.+|.
T Consensus         3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs   34 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRS   34 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhC-CCceEEEEeCC
Confidence            799999999999999999998 6 899999997

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=89.26  E-value=0.48  Score=43.70  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence            599999999999999999999 99999999853

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.22  E-value=0.55  Score=42.83  Aligned_cols=32  Identities=22%  Similarity=0.572  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      .|.|||+|..|...|+.|+.. |. +|+++|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            589999999999999999997 65 899999843

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=88.83  E-value=0.56  Score=42.40  Aligned_cols=32  Identities=22%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCe-EEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~  123 (321)
                      ..++|+|+|.+|.++|+.|++. |.+ |.|+.|.
T Consensus       127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~  159 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIK  159 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            4699999999999999999998 876 9999886

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=88.79  E-value=0.66  Score=39.93  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence            57899999999999999999998 77 499999863

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.55  E-value=0.61  Score=42.79  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++.+..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence            489999999999999999999 99999999853

>PRK04148 hypothetical protein; Provisional

Probab=88.54  E-value=0.42  Score=37.88  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..+++||.| .|...|..|++. |.+|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence            469999999 899889999999 99999999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.52  E-value=0.35  Score=44.34  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      ..||.|||||-+|+.||+-|+-- =..|+|+|=.+..
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eL  389 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEL  389 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhh-hheeeeeecchhh
Confidence            35999999999999999999975 5689999976543

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=88.42  E-value=1.4  Score=41.47  Aligned_cols=125  Identities=11%  Similarity=0.192  Sum_probs=67.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccchhhhcc--chHHHHH--HHcC-----CCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFL--DELG-----IDYD  158 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~--~~~~~~l--~~~g-----~~~~  158 (321)
                      .+...+|||+|.+..+++..... .++.+|++|-..+..-   ++.-.+-..++..  +.....|  .+|.     +-|.
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffe  253 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFE  253 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---ccCCCcchhceecCCCChhhheeecccCCccceeEec
Confidence            35789999999987777665443 2378999987654321   1111111111100  0000000  0110     0010


Q ss_pred             cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                       .+.++  ....++     .++. +-||-++.+..|++|..++..|   ..+              ++.+|..|..++||
T Consensus       254 -pd~Ff--vspeDL-----p~~~-nGGvAvl~G~kvvkid~~d~~V---~Ln--------------DG~~I~YdkcLIAT  307 (659)
T KOG1346|consen  254 -PDGFF--VSPEDL-----PKAV-NGGVAVLRGRKVVKIDEEDKKV---ILN--------------DGTTIGYDKCLIAT  307 (659)
T ss_pred             -CCcce--eChhHC-----cccc-cCceEEEeccceEEeecccCeE---Eec--------------CCcEeehhheeeec
Confidence             01111  122222     2232 6789999999999998777643   343              34789999999999


Q ss_pred             CCCC
Q 020815          239 GHDG  242 (321)
Q Consensus       239 G~~~  242 (321)
                      |+..
T Consensus       308 G~~P  311 (659)
T KOG1346|consen  308 GVRP  311 (659)
T ss_pred             CcCc
Confidence            9865

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.37  E-value=0.57  Score=45.00  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .++|+|+|..|.++|..|++. |.+|.+.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            589999999999999999999 99999999753

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.35  E-value=0.66  Score=42.24  Aligned_cols=32  Identities=22%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++|+..
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999998 99999999753

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=88.31  E-value=0.75  Score=40.40  Aligned_cols=34  Identities=18%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence            46899999999999999999998 64 788999864

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=87.96  E-value=0.63  Score=43.48  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|-.||..|..|++. |.+|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            588999999999999999999 99999999764

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=87.96  E-value=0.64  Score=42.21  Aligned_cols=31  Identities=19%  Similarity=0.467  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      |.|||+|..|..+|+.|+.. ++ +|+|+|...
T Consensus         1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence            57999999999999999987 66 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=87.82  E-value=0.75  Score=41.57  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++|+..
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            599999999999999999999 99999999864

>PRK08328 hypothetical protein; Provisional

Probab=87.77  E-value=0.83  Score=39.83  Aligned_cols=34  Identities=32%  Similarity=0.593  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      +..|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            56899999999999999999999 75 688998763

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=87.70  E-value=0.81  Score=41.71  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~  124 (321)
                      .|+|||+|.+|.++|+.|+.. |  ..+.|+|+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence            489999999999999999998 7  4799999854

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00936 ahcY adenosylhomocysteinase

Probab=87.69  E-value=0.78  Score=43.46  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||.|..|..+|..|... |.+|+++|..+
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence            45899999999999999999998 99999999765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK07208 hypothetical protein; Provisional

Probab=87.66  E-value=2.9  Score=40.49  Aligned_cols=59  Identities=22%  Similarity=0.061  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEE-EEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRV-GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v-~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ..+.+.|.+.+. +.|++|+++++|++|..+++++ ..+....          .+|...++.||.||.|.-
T Consensus       218 ~~l~~~L~~~l~-~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~----------~~g~~~~~~ad~VI~a~p  277 (479)
T PRK07208        218 GQLWETAAEKLE-ALGGKVVLNAKVVGLHHDGDGRIAVVVVND----------TDGTEETVTADQVISSMP  277 (479)
T ss_pred             chHHHHHHHHHH-HcCCEEEeCCEEEEEEEcCCcEEEEEEEEc----------CCCCEEEEEcCEEEECCC
Confidence            456677777776 5789999999999999887653 3333321          112224689999999887

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=87.38  E-value=0.9  Score=40.02  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||.|..|..+|..|++. |. +++|+|...
T Consensus        32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence            57999999999999999999998 75 789998763

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=87.37  E-value=0.65  Score=44.19  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|+..|..|++. |.+|+++|++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence            489999999999999999999 99999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=87.25  E-value=0.79  Score=43.71  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|+..|..|++. |.+|.++|++.
T Consensus         5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~   36 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ   36 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence            599999999999999999999 99999999864

>PRK06223 malate dehydrogenase; Reviewed

Probab=87.20  E-value=0.93  Score=41.22  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      .|.|||+|..|...|+.++.. ++ .|.|+|...
T Consensus         4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence            699999999999999999987 65 999999854

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=87.01  E-value=0.85  Score=44.49  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|+|+|+|.+|+.++..|... |.+|.++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            36899999999999999999988 99999999864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=86.90  E-value=0.99  Score=39.70  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCC----------CCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNP----------NIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~----------G~~V~liEk~~  124 (321)
                      ...|+|||+|..|..++..|++.+          |.+++|+|...
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            579999999999999999999861          33889998763

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.90  E-value=0.76  Score=47.01  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|+.++.. |++|+|+|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence            699999999999999999999 99999999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=86.87  E-value=0.93  Score=41.38  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999999 99999999863

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=86.80  E-value=1.9  Score=40.47  Aligned_cols=51  Identities=12%  Similarity=0.076  Sum_probs=37.0

Q ss_pred             HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       174 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      +.|.+.+. +.|.+|+++++|++|..+++++..+...              ++.++.||.||+|+-
T Consensus       201 ~~l~~~l~-~~g~~i~~~~~V~~i~~~~~~~~~~~~~--------------~g~~~~~d~vi~a~p  251 (419)
T TIGR03467       201 EPARRWLD-SRGGEVRLGTRVRSIEANAGGIRALVLS--------------GGETLPADAVVLAVP  251 (419)
T ss_pred             HHHHHHHH-HcCCEEEcCCeeeEEEEcCCcceEEEec--------------CCccccCCEEEEcCC
Confidence            44555664 5689999999999999888765433321              125688999999877

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=86.76  E-value=0.9  Score=40.68  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..++|+|+|.++.++++.|++. |. +|.|+.|..
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~  156 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE  156 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            3799999999999999999998 75 599998863

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=86.73  E-value=1  Score=38.35  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..++|+|.|-.|..+|..|.+. |.+|+++|.+
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            4799999999999999999999 9999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.61  E-value=0.99  Score=43.36  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ..++|+|.|.+|+++|..|++. |.+|.+.|....
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~   39 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK   39 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            3699999999999999999999 999999997543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=86.54  E-value=0.9  Score=44.44  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..+++. |++|.++|+..
T Consensus         7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999874

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=86.48  E-value=1.2  Score=37.56  Aligned_cols=33  Identities=21%  Similarity=0.476  Sum_probs=29.4

Q ss_pred             cccEEEECC-ChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...++|+|| |..|..+|..|++. |.+|.++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            357999997 99999999999998 8999999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.25  E-value=0.87  Score=46.56  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|+.++.. |++|+|+|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ  346 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=86.22  E-value=1.4  Score=42.35  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhh
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR  251 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~  251 (321)
                      ....++.+.+++.|++++.+ ++.++...++.-..|...+.         ..++..++.+|.||+++|-..+.+...+.+
T Consensus       416 ~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~V~~EdT---------l~g~~~e~~~DLVVLa~Gmep~~g~~kia~  485 (622)
T COG1148         416 DYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLIVRVEDT---------LTGEVKEIEADLVVLATGMEPSEGAKKIAK  485 (622)
T ss_pred             cHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeEEEEEec---------cCccceecccceEEEeeccccCcchHHHHH
Confidence            34555666666789999998 66666655443344544432         223457899999999999665555555555


Q ss_pred             hhhcC
Q 020815          252 LKSIG  256 (321)
Q Consensus       252 ~~~~g  256 (321)
                      ..++.
T Consensus       486 iLgL~  490 (622)
T COG1148         486 ILGLS  490 (622)
T ss_pred             hcCcc
Confidence            44443

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.15  E-value=1  Score=41.36  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999853

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=86.07  E-value=1.2  Score=38.77  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||.|..|..+|..|++. |. +++|+|...
T Consensus        21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence            46899999999999999999999 76 788998763

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.06  E-value=0.95  Score=42.08  Aligned_cols=32  Identities=31%  Similarity=0.376  Sum_probs=25.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~  124 (321)
                      .|+|+|+|+.||.++..+... | .+|+++|..+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCH
Confidence            599999999999997666667 6 5677777753

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=85.99  E-value=1.2  Score=38.89  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||.|..|..+|..|++. |. +++|+|...
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence            46899999999999999999998 76 899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=85.94  E-value=1.1  Score=40.60  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|+|||.|.+|..++..|.+. |.+|.++++..
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            46899999999999999999999 99999999873

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=85.93  E-value=1.1  Score=40.43  Aligned_cols=32  Identities=31%  Similarity=0.584  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ..++|+|+|.++-++++.|++. |. ++.|+.|.
T Consensus       128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~  160 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD  160 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence            4799999999999999999998 65 78899875

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=85.78  E-value=1.1  Score=42.75  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp  245 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP  245 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence            45799999999999999999999 99999999864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.70  E-value=1  Score=43.95  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|+|.|.+|++++..|.+. |.+|++.|..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRF-GARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3699999999999999999888 9999999964

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=85.47  E-value=1.5  Score=35.03  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=28.0

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCC-CCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNP-NIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~-G~~V~liEk~~  124 (321)
                      .|.|||+ |..|...|+.|...+ ..++.|+|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            5899999 999999999999862 34699999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=85.39  E-value=1.1  Score=43.33  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCC-CCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~  124 (321)
                      .|.|||.|..|+.+|..|++.+ |.+|+.+|.+.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            5999999999999999999861 48899999754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.37  E-value=1.4  Score=40.13  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|++. |.+|.++++..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            3699999999999999999999 99999999864

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=85.36  E-value=1  Score=39.20  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~  125 (321)
                      +..|+|||.|..|..++-.|+|. |. +++|||....
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRs-Gig~itlID~D~v   65 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARS-GIGRITLIDMDDV   65 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHc-CCCeEEEEecccc
Confidence            46899999999999999999998 65 8999998753

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=85.31  E-value=1.2  Score=39.70  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.++|+|+|.+|.++|..|++. |.+|.++++.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~  149 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRT  149 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4799999999999999999998 8999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.26  E-value=1.1  Score=36.62  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=27.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..++|+|=|-.|-.+|..|... |.+|.|.|..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence            4799999999999999999999 99999999975

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.26  E-value=1  Score=43.63  Aligned_cols=31  Identities=19%  Similarity=0.110  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .|+|+|.|-+|.++|..|.+. |.+|++.|.+
T Consensus        10 ~v~v~G~G~sG~~~~~~l~~~-g~~v~~~d~~   40 (468)
T PRK04690         10 RVALWGWGREGRAAYRALRAH-LPAQALTLFC   40 (468)
T ss_pred             EEEEEccchhhHHHHHHHHHc-CCEEEEEcCC
Confidence            699999999999999999999 9999999964

>PRK08223 hypothetical protein; Validated

Probab=85.25  E-value=1.2  Score=40.04  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV   61 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            57999999999999999999999 75 788998764

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=85.25  E-value=1.1  Score=44.16  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..++|+|+|.+|.++|+.|++. |.+|.++.+.
T Consensus       380 k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~  411 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEK-GARVVIANRT  411 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            4689999999999999999999 8999999874

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=85.14  E-value=1.2  Score=43.73  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |+.|.++|+..
T Consensus         9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~   40 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARA   40 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999875

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=85.09  E-value=1.4  Score=39.74  Aligned_cols=33  Identities=24%  Similarity=0.491  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|||+|.++-++++.|.+. |. +|.|+.|.
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt  158 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASL-GVTDITVINRN  158 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            45799999999999999999998 75 69999875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=85.03  E-value=1.8  Score=31.25  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk  122 (321)
                      ...++|+|.|..|..++..|.+..+.++.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            357999999999999999998863578999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=85.01  E-value=1.4  Score=38.25  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|+|||||..++.=+..|.+. |.+|+||-..
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~   57 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKK   57 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            45799999999999999999999 9999999764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.86  E-value=1.1  Score=44.52  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +-+++|+|.|..|...|..|.++ |.+|++||+++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~  450 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR  450 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence            35899999999999999999999 99999999975

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=84.85  E-value=1.2  Score=40.00  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|.+.|..|.+. |.+|.+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            489999999999999999999 99999999863

>PTZ00117 malate dehydrogenase; Provisional

Probab=84.79  E-value=1.5  Score=40.18  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~  124 (321)
                      ...|.|||+|..|...|+.|+.. + ..+.|+|...
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~-~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQK-NLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC-CCCeEEEEECCC
Confidence            35799999999999999999988 7 5899999864

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=84.75  E-value=1.3  Score=39.95  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...++|||.|..|..+|..|... |.+|.++++..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45899999999999999999999 89999999863

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=84.59  E-value=1.1  Score=46.00  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|...|+.++.. |++|+++|...
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence            3599999999999999999999 99999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=84.57  E-value=1.4  Score=39.60  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC-CeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~  123 (321)
                      ...++|+|+|.+|.+++..|.+. | .+|.|+.|.
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~  156 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDL-GVAEITIVNRT  156 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            35799999999999999999998 8 789999886

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=84.44  E-value=1.5  Score=39.81  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      ..|.|||.|..|.+.|..|.+. |.  +|.++++..
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence            3699999999999999999988 74  899998863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	321
1rp0_A	284	Crystal Structure Of Thi1 Protein From Arabidopsis		1e-141
3jsk_A	344	Thiazole Synthase From Neurospora Crassa Length = 3		1e-93
3fpz_A	326	Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin		4e-77

>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis Thaliana Length = 284

Iteration: 1
 Score =  499 bits (1284), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/266 (88%), Positives = 250/266 (93%)
Query: 55  SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPN 114
           S  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN
Sbjct: 4   SAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPN 63
Query: 115 IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS 174
           +Q+AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTS
Sbjct: 64  VQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTS 123
Query: 175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234
           TIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+V
Sbjct: 124 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIV 183
Query: 235 VSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV 294
           VSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEV
Sbjct: 184 VSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEV 243
Query: 295 AEIDGAPRMGPTFGAMMISGQKAARM 320
           AEIDGAPRMGPTFGAMMISGQKA ++
Sbjct: 244 AEIDGAPRMGPTFGAMMISGQKAGQL 269

>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa Length = 344

Iteration: 1
 Score =  339 bits (870), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/283 (59%), Positives = 205/283 (72%), Gaps = 20/283 (7%)
Query: 56  PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPN 114
           P    + F F PI+ES VSR MTRRY  D+  +A+TD    GAGS GLS AY LS   P+
Sbjct: 45  PTLGTDAFTFSPIRESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPD 104
Query: 115 IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS 174
           ++I I+E  V+PGGGAWLGGQLFSAMV+RKPA +FLDE+G+ Y+++ +YVV+KHAALFTS
Sbjct: 105 LRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTS 164
Query: 175 TIMSKLLARPNVKLFNAVAAEDLIVKGG-------------------RVGGVVTNWALVS 215
           T++SK+L RPNVKLFNA   EDLI +                     R+ GVVTNW LVS
Sbjct: 165 TVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVS 224
Query: 216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDA 275
           M+HD QS MDPN + A V++S+ GHDGPFGA  VKRL S+  +E + GM+ LDM SAEDA
Sbjct: 225 MHHDDQSXMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDA 284
Query: 276 IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA 318
           IV  TRE+VPG+IV GME++EIDGA RMGPTFGAM +SG KAA
Sbjct: 285 IVNNTREIVPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAA 327

>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin Thiazole Synthase Length = 326

Iteration: 1
 Score =  284 bits (727), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/285 (53%), Positives = 190/285 (66%), Gaps = 24/285 (8%)
Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQI 117
           D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++
Sbjct: 34  DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 93
Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
            IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++
Sbjct: 94  CIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVL 153
Query: 178 SKLLARPNVKLFNAVAAEDLIV-----KGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA 231
           SK+L  PNVKLFNA   EDL+      KG   V GVVTNW LV+  H TQ  MDPNV+E 
Sbjct: 154 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCXMDPNVIEL 213
Query: 232 K---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI 276
                           V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +
Sbjct: 214 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDV 273
Query: 277 VRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAR 319
           V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA 
Sbjct: 274 VIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAE 318

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	1e-124
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	1e-115
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-112
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	1e-08
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	1e-08
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	5e-08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-07
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	3e-07
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	3e-07
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	4e-07
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	5e-07
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	5e-07
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	7e-07
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	7e-07
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	8e-07
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	1e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	2e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	2e-06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	2e-06
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	4e-06
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	4e-06
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	6e-06
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	7e-06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	8e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	8e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	8e-06
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	9e-06
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-05
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	1e-05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-05
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	2e-05
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	2e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	3e-05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-05
3dme_A	369	Conserved exported protein; structural genomics, P	4e-05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	4e-05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	4e-05
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	4e-05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	4e-05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	4e-05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	5e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	5e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	6e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	6e-05
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	9e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	1e-04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	1e-04
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	1e-04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	1e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	1e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-04
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	2e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-04
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	2e-04
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	3e-04
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	3e-04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	3e-04
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	4e-04
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	4e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	4e-04
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	4e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	4e-04
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	4e-04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	6e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	7e-04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	9e-04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	9e-04

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score =  355 bits (912), Expect = e-124
 Identities = 239/269 (88%), Positives = 254/269 (94%)

Query: 52  ASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK 111
              S  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLS AYE+SK
Sbjct: 1   GRGSAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISK 60

Query: 112 NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171
           NPN+Q+AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAAL
Sbjct: 61  NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAAL 120

Query: 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231
           FTSTIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEA
Sbjct: 121 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEA 180

Query: 232 KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTG 291
           K+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTG
Sbjct: 181 KIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTG 240

Query: 292 MEVAEIDGAPRMGPTFGAMMISGQKAARM 320
           MEVAEIDGAPRMGPTFGAMMISGQKA ++
Sbjct: 241 MEVAEIDGAPRMGPTFGAMMISGQKAGQL 269

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score =  335 bits (861), Expect = e-115
 Identities = 173/337 (51%), Positives = 218/337 (64%), Gaps = 28/337 (8%)

Query: 4   MASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTF 63
           M+ +   P    T             +        P++              P    + F
Sbjct: 1   MSPSVLEPQSVPTLV--------NVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAF 52

Query: 64  KFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQ 122
            F PI+ES VSR MTRRY  D+  +A+TD+V+VGAGS GLS AY LS   P+++I I+E 
Sbjct: 53  TFSPIRESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEA 112

Query: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
            V+PGGGAWLGGQLFSAMV+RKPA +FLDE+G+ Y+++ +YVV+KHAALFTST++SK+L 
Sbjct: 113 GVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQ 172

Query: 183 RPNVKLFNAVAAEDLIVK-------------------GGRVGGVVTNWALVSMNHDTQSC 223
           RPNVKLFNA   EDLI +                     R+ GVVTNW LVSM+HD QS 
Sbjct: 173 RPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSA 232

Query: 224 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV 283
           MDPN + A V++S+ GHDGPFGA  VKRL S+  +E + GM+ LDM SAEDAIV  TRE+
Sbjct: 233 MDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREI 292

Query: 284 VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM 320
           VPG+IV GME++EIDGA RMGPTFGAM +SG KAA  
Sbjct: 293 VPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHE 329

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score =  327 bits (839), Expect = e-112
 Identities = 154/317 (48%), Positives = 200/317 (63%), Gaps = 24/317 (7%)

Query: 28  APMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMIT 87
           A  + +      +  +        +      D + FKF PI+ES VSR MT RY  D+  
Sbjct: 3   ATSTATSTSASQLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDK 62

Query: 88  YADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146
           +A +DV++VGAGS+GLS AY ++KN P++++ IIE SV+PGGG+WLGGQLFSAMV+RKPA
Sbjct: 63  FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPA 122

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG----- 201
           H+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +      
Sbjct: 123 HLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKG 182

Query: 202 -GRVGGVVTNWALVSMNHDTQSCMDPNVMEA---------------KVVVSSCGHDGPFG 245
              V GVVTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFG
Sbjct: 183 EVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFG 242

Query: 246 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRM 303
           A   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RM
Sbjct: 243 AFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRM 302

Query: 304 GPTFGAMMISGQKAARM 320
           GPTFGAM +SG  AA  
Sbjct: 303 GPTFGAMALSGVHAAEQ 319

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 54.9 bits (131), Expect = 1e-08
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           MT   ++        DV+V+GAG  GL  A  L++       I++ + +PGG A
Sbjct: 4   MTHPDIS-------VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA 50

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 67  PIKESIVSREMTRRYMTDMITYADT--DVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS 123
           P  +    R     +      + +   D+VV+GAG  G +CA+ L +  P   + ++E+ 
Sbjct: 11  PPPDPTPPRRAGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70

Query: 124 VSPG--GGAWLGGQLFSAM 140
             P   G   L   +++A 
Sbjct: 71  GLPNEEGATILAPGVWTAQ 89

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           M +++T     +V++GAG  GL  A  L++       + E + +PGG +
Sbjct: 4   MAELLTP---KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLS 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 43/307 (14%), Positives = 90/307 (29%), Gaps = 77/307 (25%)

Query: 23  SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFK-FDPIKESIVSREMTRRY 81
           S        PS++    I   R + L         Y+++  + +  +++++   E+    
Sbjct: 96  SPIKTEQRQPSMMTRMYI-EQR-DRLYNDNQVFAKYNVSRLQPYLKLRQAL--LELRP-- 149

Query: 82  MTDMITYADTDVVVVGAGSAGLSC-AYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLFSA 139
                     +V++ G   +G +  A ++  +  +Q  +           WL      S 
Sbjct: 150 --------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKM------DFKIFWLNLKNCNSP 195

Query: 140 MVVRKPAHIFLDELGIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198
             V +     L ++  ++  + D+   IK         + +LL     +         L+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCLL 248

Query: 199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD-GPFGATGVKRLKSIGM 257
           V    +  V    A  + N    SC        K+++++                  I +
Sbjct: 249 V----LLNVQNAKAWNAFNL---SC--------KILLTT--RFKQVTDFLSAATTTHISL 291

Query: 258 IEEVPGM----------KALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF 307
                 +          K LD    +D    L REV+                PR     
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDC-RPQD----LPREVL-------------TTNPRRLSII 333

Query: 308 GAMMISG 314
              +  G
Sbjct: 334 AESIRDG 340

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 55/191 (28%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFSAM 140
           M ++      DV+++G G AG S AY+LS+   ++I +++       G    G  +  A 
Sbjct: 2   MKEL----KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWNRIGDKPCGDAVSKAH 56

Query: 141 VVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPN--------------- 185
                     D+LG+ Y + +      +     S  M  +                    
Sbjct: 57  F---------DKLGMPYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVL 107

Query: 186 -------VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
                  V++++   A   I + G V G V     +          +   + +KVVV   
Sbjct: 108 KEAQDRGVEIWDLTTAMKPIFEDGYVKGAV-----LFNRRTN----EELTVYSKVVV--- 155

Query: 239 GHDGPFGATGV 249
                  ATG 
Sbjct: 156 ------EATGY 160

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 53.0 bits (127), Expect = 5e-08
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 16/84 (19%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFSA 139
           D+ + ++GAG AGL+    L +       I+E++   GG             +G  +   
Sbjct: 6   DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP 65

Query: 140 M--VVRKPAHIFLDELGIDYDEQD 161
               +++     +D  G   D   
Sbjct: 66  SYDTIQE----IMDRTGDKVDGPK 85

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 18/90 (20%)

Query: 78  TRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------G 129
              +M         +V VVG G +GL+ A+ L         ++E S   GG        G
Sbjct: 7   HHHHMPRT---TGMNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSARLGGAVGTHALAG 62

Query: 130 AWL--GGQLFSAMVVRKPAHI-FLDELGID 156
             +  G   F     R+PA       L ++
Sbjct: 63  YLVEQGPNSFLD---REPATRALAAALNLE 89

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 92  DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWL-----GGQLF----SAMV 141
            +V+VG G  GL+ AY   +  P++ I ++E     GG   +      G        + V
Sbjct: 6   RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG--KVATYREDGFTIERGPDSYV 63

Query: 142 VRKPAHI-FLDELGID 156
            RK      ++ +G+ 
Sbjct: 64  ARKHILTDLIEAIGLG 79

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           D VVVGAG  GL+ AY L       + +++   +PG G 
Sbjct: 25  DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGD 63

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA---WLGGQLFSA-------MV 141
             VVVGAG  GL     L++N   +I ++E+S   GG        G   S          
Sbjct: 2   RAVVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHG 60

Query: 142 VRKPAHIFLDELGIDYD 158
              P    L  LG   +
Sbjct: 61  EDGPLAHLLRILGAKVE 77

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           M     + +++VGAG+ G S A  L++     + +++    P   +
Sbjct: 1   MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS 46

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-----GGQLF----SAMVV 142
            V V+GAG +GL+ AY+L     + + + E     GG   L      G ++    + M  
Sbjct: 15  RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAGG--KLRSVSQDGLIWDEGANTMTE 71

Query: 143 RKPAHI-FLDELGIDYDEQ 160
            +      +D LG+   +Q
Sbjct: 72  SEGDVTFLIDSLGLREKQQ 90

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           M  M   A  D+ VVG+G  GL+ A  ++   + ++ ++E+    GG A+
Sbjct: 1   MQPMT--ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAY 48

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           +  DV++VG G AGL+ A +L+  P+I+  I+EQ   P   
Sbjct: 31  SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMEL 71

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 49.2 bits (117), Expect = 8e-07
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 19/81 (23%)

Query: 92  DVVVVGAGSAGLSCAYELSK-----NPNIQIAIIEQSVSPGG--------GAWL--GGQL 136
            VV++G G  GL+ A+ + K     N  +++ ++E S   GG        G  +  G   
Sbjct: 7   HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPD- 65

Query: 137 FSAMVVRKPAHI-FLDELGID 156
             + + RK +    + +LG++
Sbjct: 66  --SFLERKKSAPQLVKDLGLE 84

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 42/210 (20%), Positives = 67/210 (31%), Gaps = 55/210 (26%)

Query: 76  EMTRRYMTDMITYADTDVVVVGAGSAGLSCAYEL-----SKNPNIQIAIIEQSVSPGGGA 130
            M R          + DVV+VGAG AGLS A  L         ++++ ++E+       A
Sbjct: 28  NMERFAE-------EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEK------AA 74

Query: 131 WLGGQLFSAMVVRKPAHIFLDELGIDYDEQD----NYVVIKHAALFTSTIMSKLLARPNV 186
            +G    S   +   A    +EL  D+ E+       V      + T      +   P +
Sbjct: 75  HIGAHTLSGACLDPRA---FEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGL 131

Query: 187 KLFNA-----------------------------VAAEDLIVKGGRVGGVVTN-WALVSM 216
            + N                               AAE L  + G V G+ TN   +   
Sbjct: 132 PMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKD 191

Query: 217 NHDTQSCMDPNVMEAKVVVSSCGHDGPFGA 246
                +      + AKV + + G  G    
Sbjct: 192 GAPKTTFERGLELHAKVTIFAEGCHGHLAK 221

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           M +     +++VGAG +G     +L++    Q+ II+Q    GG ++
Sbjct: 1   MKSK---KILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSY 43

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 51/169 (30%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------------------- 128
            TDVV++G+G AGL+ A         ++ ++E+   PGG                     
Sbjct: 126 TTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLG 184

Query: 129 ---------------GAWLGGQ-LFSAMVVRKPAHI-FLDELGIDYDEQDNYV------- 164
                          G  +    L   +       I +L  +G D  +            
Sbjct: 185 IEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRS 244

Query: 165 -VIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKG-GRVGGVV 208
                 A   + +   L          +        ++    G+V GV+
Sbjct: 245 HRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVL 293

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           D ++VG+G  G  CA EL K  N ++ +IE+    GG A
Sbjct: 3   DYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNA 40

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           D ++VGAG AG   A  L+ +   ++ I+++    GG A
Sbjct: 31  DYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIGGNA 68

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 92  DVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG---------GAWL--GGQLFSA 139
            VVV+G G +GL+ +Y LS+     ++ ++E S   GG         GA    G +    
Sbjct: 4   TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRP 63

Query: 140 MVVRKPAHIFL-DELGID 156
                   + L  ELG+D
Sbjct: 64  AGALGARTLLLVSELGLD 81

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS 123
           VVVVG G+ G + A  +   +P+I++ +IE +
Sbjct: 5   VVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 51/169 (30%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------------------- 128
             DVVVVG+G AG S A   + +   ++ +IE+    GG                     
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKK 184

Query: 129 ---------------GAWLGGQ-LFSAMVVR-KPAHIFLDELGIDYDEQDNYV------- 164
                          G  +    L   +    K +  ++  +G D  +            
Sbjct: 185 ITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA 244

Query: 165 -VIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKG-GRVGGVV 208
                 A   + ++  L       N+ L       +++    G V G++
Sbjct: 245 HRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGIL 293

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 87  TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           T     VV+VGAG AGLS AY L+     Q+ ++E S  PGG
Sbjct: 30  TSNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGG 70

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 51/169 (30%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GAWLGGQLFSA--------- 139
            T V+VVGAGSAG + +    K     + +++++   GG      G + +          
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHG 179

Query: 140 ---------------------------MVVRKPAHI-FLDELGIDYDEQDNYV------- 164
                                      +  +    + +L+ LG + D+            
Sbjct: 180 VEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRT 239

Query: 165 -VIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVK-GGRVGGVV 208
                       I+  L        +          L+V     V G V
Sbjct: 240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAV 288

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 25/95 (26%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG------------------GAWLG 133
           D +VVG G +GL  A +L+     ++ ++E     GG                  GA+L 
Sbjct: 3   DAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH 61

Query: 134 GQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168
            +    +         LD  GI       +   +H
Sbjct: 62  RKHHPRLAA------ELDRYGIPTAAASEFTSFRH 90

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIE---------QSVSPG------GGAWLGGQ 135
             V+VVGAG +G+S A  LS+     + I+E            +        G  W+ G 
Sbjct: 5   PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEG- 63

Query: 136 LFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAV 192
             +   +     I    L +     D   + ++       +  +   +  ++L ++V
Sbjct: 64  -VNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV 119

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIE-----------QSVSPG--- 127
           M  +   A   V+++GAG AGL  A  L +N      ++E            +   G   
Sbjct: 1   MNTVSP-AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY 59

Query: 128 --GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNY 163
             G +W          +  P  +   +L ++       
Sbjct: 60  DIGASWHHD------TLTNPLFLEEAQLSLNDGRTRFV 91

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
             DVVV+G G +GLS  Y L ++  +   I++   SP GGAW
Sbjct: 3   SVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEASP-GGAW 42

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           +  M  + +   VV+G G  G + AY L+K  N   A+ E   + GG  
Sbjct: 11  IRAMKRHYE--AVVIGGGIIGSAIAYYLAKE-NKNTALFESG-TMGGRT 55

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL----GGQLFS-AMVVRKP 145
             V ++GAG+AG+  A  L     I   II +  +  G ++       +  + +      
Sbjct: 5   HKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGTV-GHSFKHWPKSTRTITPSFTSNGF 62

Query: 146 AHIFLDELGID 156
               ++ + +D
Sbjct: 63  GMPDMNAISMD 73

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-----------LGGQLFS 138
             DVVVVG G +G++ A  L  +  + + ++E     GG  +           LGG    
Sbjct: 4   KCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62

Query: 139 AMVVRKPAHIFLDELGIDYDEQDNY 163
               +        ELG++  + +  
Sbjct: 63  P--TQNRILRLAKELGLETYKVNEV 85

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 75/232 (32%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI---AIIEQSVSP---GG------- 128
           M  +  ++  DV+++G+G+AGLS A  L+    + +     + +  +    GG       
Sbjct: 1   MNTLPEHS-CDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDE 59

Query: 129 --------------GAWLGGQLFSAMVVRK-PAHI-FLDELGIDYDEQDNYVV------- 165
                         GA +  +     V     + + +L + G+ +D              
Sbjct: 60  TDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLT 119

Query: 166 ---------IKHAALFT-STIMSKLLAR----PNVKLFNAVAAEDLIVKGG-------RV 204
                    I HAA  T   + + L+++    PN+++     A DLIV          RV
Sbjct: 120 REGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRV 179

Query: 205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG--------PFGATG 248
            G          N + ++        AK VV + G           P  ++G
Sbjct: 180 VGAWV------WNRNKET---VETCHAKAVVLATGGASKVYQYTTNPDISSG 222

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 44/159 (27%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAI---IEQSVSP---GG------------------ 128
           + ++G+G AGLS    L +       I   I+   +P   GG                  
Sbjct: 2   IYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDT 61

Query: 129 ---GAWLGGQLFSAMVVRK-PAHI-FLDELGIDYDEQ--------DNYVVIKHAALFT-S 174
              G  L        V  +    I   +  G +++E            V+  H    T  
Sbjct: 62  IRVGDGLCDVKTVNYVTSEAKNVIETFESWGFEFEEDLRLEGGHTKRRVL--HRTDETGR 119

Query: 175 TIMSKLLA---RPNVKLFNAVAAEDLIVKGGRVGGVVTN 210
            I + LL       + +      E  + K G+V G VT 
Sbjct: 120 EIFNFLLKLAREEGIPIIEDRLVEIRV-KDGKVTGFVTE 157

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQ 135
            DV +VGAG +GL+ A  L K   + +A+IE     GG  W          +GGQ
Sbjct: 6   RDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ 59

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
             VVV+G G AGL  A+EL K    ++ ++E
Sbjct: 12  HSVVVLGGGPAGLCSAFELQKA-GYKVTVLE 41

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 93  VVVVGAGSAGLSCAYELSK--NPNIQIAIIEQS 123
           VV++GAG+ G+  AYE+ +      ++ +I  +
Sbjct: 7   VVILGAGTGGMPAAYEMKEALGSGHEVTLISAN 39

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
            D D +V+GAG  GL+ A  L+     ++ + E +   G G 
Sbjct: 3   TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEGIGTGT 43

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAW 131
           D ++VG G  GL+ AY L+KN  I  +A++E+    GG   
Sbjct: 23  DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMA 63

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 91  TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGA 130
             V++VGAG  G  CA  L +     + +A+ +++   GG  
Sbjct: 2   AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRM 43

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           MT   T    D VV+GAG  G+   ++L     +     +++  PGG
Sbjct: 1   MTAQTT-HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 29/151 (19%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-----------VSPGG-- 128
           MTD       DV++ G G  G   AY L +    ++ ++EQ+           + P G  
Sbjct: 2   MTDN----HIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARRERAINGADLLKPAGIR 56

Query: 129 -----GAW-----LGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
                G        GG++   + V     +         D +  ++++   +L    ++ 
Sbjct: 57  VVEAAGLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESL-RRLVLE 115

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVT 209
           K+     V++      E +          V 
Sbjct: 116 KIDGEATVEMLFETRIEAVQRDERHAIDQVR 146

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKN----PNIQIAIIEQSVSP 126
           MT     +  DV++VGAG AGL  A  LS+     P++++ II++  + 
Sbjct: 1   MTKYSE-SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 48

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ-----SVSPGGGAWLGGQLFSA 139
           ++ ++   VVV+G+G  GLS A  L++     + I+ +       S    +   G  ++ 
Sbjct: 1   LMMHSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDVSSQTFASPWAGANWTP 59

Query: 140 MVVRKPAH 147
            +      
Sbjct: 60  FMTLTDGP 67

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
            D +V+GAG AG S  Y LS +    + ++E+   PG  +
Sbjct: 10  ADYLVIGAGIAGASTGYWLSAHGR--VVVLEREAQPGYHS 47

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFS- 138
             + T     V+++G+G +GL+ A +L     + + ++E     GG       G  +   
Sbjct: 100 KPLPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATFRKGNYVADL 158

Query: 139 -AMVVRK----PAHIFLDELGIDYDEQDNYVVI 166
            AMVV      P  +   ++ ++  +      +
Sbjct: 159 GAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPL 191

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Length = 602

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 53/169 (31%)

Query: 91  TDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQ-------SVSPGGGA------------ 130
            D+ +VGAG AGL  A   ++ NPN +IA+I +       +V+  GG+            
Sbjct: 6   ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEY 65

Query: 131 ----------WLGGQ-LFSAMVVRKPAHIF-LDELGIDYDEQDN---------------- 162
                     WL  Q +    V   P  +  L+  G  +  + +                
Sbjct: 66  HFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERT 125

Query: 163 -YVVIK--HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV 208
            +   K     L   T+    L  P ++ F+     D++V  G V G+V
Sbjct: 126 WFAADKTGFHMLH--TLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLV 172

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 10/35 (28%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK 111
           MT  Y          DVVVVG G  GL+ A+++++
Sbjct: 1   MTESY----------DVVVVGGGPVGLATAWQVAE 25

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
             D++++G+GS G +  Y  ++   + + + +  + P 
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPPH 38

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSC--AYELSKNPNIQIAIIE 121
           MTR  +         D+V+VG GSAG     A  LS++P+ ++ +IE
Sbjct: 7   MTRAKVEHAPNC---DIVIVGGGSAG--SLLAARLSEDPDSRVLLIE 48

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           M++       D VV+GAG  G+  A+ +     +++  IE     GG
Sbjct: 1   MSNRAKSPALDAVVIGAGVTGIYQAFLI-NQAGMKVLGIEAGEDVGG 46

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           DV+V+G G  GL+   +L+     +  ++E     GG +W
Sbjct: 41  DVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIGGRSW 79

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 93  VVVVGAGSAGLSCAYELSK--NPNIQIAIIEQS----VSPGGGAWLGGQLFSAMVVRKPA 146
           V+V+G     L+ AY L +       + +I +S      P     +   +     ++   
Sbjct: 4   VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP-ALPHVAIGVRDVDELKVDL 62

Query: 147 HIFLDELGIDY--------DEQDNYVVIKHAALFTSTI 176
              L E GI +        D + + V         +  
Sbjct: 63  SEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEE 100

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFS--A 139
           + T     V+++G+G +GL+ A +L     + + ++E     GG       G  +    A
Sbjct: 273 LPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATFRKGNYVADLGA 331

Query: 140 MVVRK----PAHIFLDELGIDYDEQDNYVVI 166
           MVV      P  +   ++ ++  +      +
Sbjct: 332 MVVTGLGGNPMAVVSKQVNMELAKIKQKCPL 362

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           +++VV+G G  G++ A+EL+K    ++ +IE+     G  +
Sbjct: 6   SEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKRFIGSGSTF 45

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126
             DV+V+GAG AG   A  ++K+   ++ I+E+   P
Sbjct: 5   KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFP 40

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 67  PIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELS---KNPNIQIAIIEQ- 122
                           T+++   +TD++++G G +G   AYE +   K   +++ ++E+ 
Sbjct: 2   VYYPKKYELYKADEVPTEVV---ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA 58

Query: 123 ------SVSPGGGA 130
                 +V+ G  A
Sbjct: 59  AVERSGAVAQGLSA 72

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 74  SREMTRRYMTDMITYADT--DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           S  +    +TD    +    D ++ G G  GL+ A  L++NPNI + +IE
Sbjct: 1   SNGIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIE 50

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 24/184 (13%), Positives = 57/184 (30%), Gaps = 48/184 (26%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-------------------------- 125
             +V+G G  GL     L++       I+E+                             
Sbjct: 109 RPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFG 167

Query: 126 -PGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFT------STIMS 178
             G G +  G+L+S +         +    ++    +  + +    + T         M 
Sbjct: 168 EGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMR 227

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
             +     ++  +   +DL ++ G++ GV  +              +   ++++ VV + 
Sbjct: 228 ATIIELGGEIRFSTRVDDLHMEDGQITGVTLS--------------NGEEIKSRHVVLAV 273

Query: 239 GHDG 242
           GH  
Sbjct: 274 GHSA 277

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
           +  + M         DVV++GAG+AG+ CA E  K    ++ +I+ + +PG
Sbjct: 18  LYFQSMV-AEKQ---DVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAPG 63

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 27  GAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMI 86
           G  + P LL L+  K        I+ +             P   ++VS  +        +
Sbjct: 1   GVTVIPRLLGLKDEKK-------IATTVGEARLSGINYRHPDS-ALVSYPVAAAAPLGRL 52

Query: 87  TYADTDVVVVGAGSAGLSCAYELSK-------NPNIQIAIIEQSVSPGGGAWLGGQLFS 138
              +  + +VG G+ G++  YEL +          I + I E           G +   
Sbjct: 53  PAGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIK 111

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 79  RRYMTDMITYADT--DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
              ++D    A    D ++ G G  GL+ A +L++NP I++ +IE
Sbjct: 11  SSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 12/20 (60%), Positives = 17/20 (85%)

Query: 92  DVVVVGAGSAGLSCAYELSK 111
           DV+VVGAGS G++  Y+L+K
Sbjct: 5   DVIVVGAGSMGMAAGYQLAK 24

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSC--AYELSKNPNIQIAIIE 121
           M    + ++ +  + D +VVG GSAG     A  LS++P + +A++E
Sbjct: 1   MHIDNIENL-SDREFDYIVVGGGSAG--AAVAARLSEDPAVSVALVE 44

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 93  VVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH 147
           VVV+GAG  GLS A  + +        + I +     +P     +   L+   +      
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP 62

Query: 148 IFLDELGIDYDE 159
              D     +D 
Sbjct: 63  QEADWSQQTFDY 74

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 19/81 (23%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------------GAWLGGQLF 137
             VV+GAG  GL  A  LSK    ++ + E+    GG              GA+      
Sbjct: 2   KTVVIGAGLGGLLSAARLSKA-GHEVEVFERLPITGGRFTNLSYKGFQLSSGAF----HM 56

Query: 138 SAMVVRKPAHIFLDELGIDYD 158
                  P   FL E+    +
Sbjct: 57  LPNGPGGPLACFLKEVEASVN 77

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           + M    +TDV+++G G  G++ A +L+    +   ++EQ+      
Sbjct: 19  SHMNAPIETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDGTITH 64

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 47/153 (30%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP----GGGAWLGGQLFSAMVVRKPA 146
            D++V+G G  G + A  ++     ++ ++E+   P    G        L + +      
Sbjct: 8   FDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAFPRHQIGESL-----LPATV------ 55

Query: 147 HIFLDELGI-DYDEQDNYVVIKHAAL------------FTSTIMS--------------K 179
           H     LG+ D  ++  + + +                FT                    
Sbjct: 56  HGICAMLGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDD 115

Query: 180 LLAR----PNVKLFNAVAAEDLIVKGGRVGGVV 208
           +L R      V +       D++ +G R  GV 
Sbjct: 116 MLLRNSERKGVDVRERHEVIDVLFEGERAVGVR 148

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
           ++ +++GAG+AGL CA +L+K     + + +     G
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIG 40

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 88  YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH 147
               DV ++G G AG+  A EL +   + +A+IE+    GG   +  +        K + 
Sbjct: 106 RVVVDVAIIGGGPAGIGAALELQQ--YLTVALIEERGWLGG--DMWLKGIKQEGFNKDSR 161

Query: 148 IFLDEL 153
             ++EL
Sbjct: 162 KVVEEL 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	100.0
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	100.0
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	100.0
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.96
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.73
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.66
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.65
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.65
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.64
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.63
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.63
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.61
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.6
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.6
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.58
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.57
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.57
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.56
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.56
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.56
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.54
3dme_A	369	Conserved exported protein; structural genomics, P	99.53
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.53
3atr_A	453	Conserved archaeal protein; saturating double bond	99.53
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.52
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.51
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.5
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.5
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.49
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.48
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.47
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.47
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.46
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.46
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.46
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.45
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.45
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.44
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.43
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.43
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.43
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.42
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.41
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.41
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.41
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.41
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.41
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.4
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.38
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.37
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.37
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.36
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.36
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.36
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.36
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.36
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.35
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.35
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.35
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.35
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.34
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.33
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.32
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.32
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.32
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.32
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.31
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.31
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.31
4dna_A	463	Probable glutathione reductase; structural genomic	99.3
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.29
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.29
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.29
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.29
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.28
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.27
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.27
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.26
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.26
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.26
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.25
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.25
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.25
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.25
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.25
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.24
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.24
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.23
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.23
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.22
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.21
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.21
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.21
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.2
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.2
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.2
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.19
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.19
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.19
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.19
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.19
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.18
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.18
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.18
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.17
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.17
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.17
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.16
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.13
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.12
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.11
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.1
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.1
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.09
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.09
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.08
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.08
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.08
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.08
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.08
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.08
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.07
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.06
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.06
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.06
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.05
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.04
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.03
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.03
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.01
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.01
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.01
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.99
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.99
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.98
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.97
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.97
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.96
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.96
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.95
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.95
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.94
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.92
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.91
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.91
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.91
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.9
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.89
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.88
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.84
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.83
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.82
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.81
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.8
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.79
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.79
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.78
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.78
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.78
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.77
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.77
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.76
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.76
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.75
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.74
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.74
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.73
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.73
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.72
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.71
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.71
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.71
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.7
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.7
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.7
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.69
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.69
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.69
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.68
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.68
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.68
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.67
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.66
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.65
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.65
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.65
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.65
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.64
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.63
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.63
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.62
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.62
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.62
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.61
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.61
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.61
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.61
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.6
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.6
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.59
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.59
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.58
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.58
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.57
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.57
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.57
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.56
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.56
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.55
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.54
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.54
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.53
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.52
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.52
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.52
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.51
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.5
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.49
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.49
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.48
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.48
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.48
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.47
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.47
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.47
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.46
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.46
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.46
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.45
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.45
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.44
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.44
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.44
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.44
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.42
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.41
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.41
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.4
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.4
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.38
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.37
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.37
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.36
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.36
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.35
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.34
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.33
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.33
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.33
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.31
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.31
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.31
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.25
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.23
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.22
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.22
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.21
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.2
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.19
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.17
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.1
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.07
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.01
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.97
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.89
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.88
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.86
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.8
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.78
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.76
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.75
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.74
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.66
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.62
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.57
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.33
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.29
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.26
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.26
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.25
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.03
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.98
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.87
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.78
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.77
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.3
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	95.23
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.12
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.07
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	95.0
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.87
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.63
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.53
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.34
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.21
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	93.91
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.82
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	93.47
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.44
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.44
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	93.33
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	92.79
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.79
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.56
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.48
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.4
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.03
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.01
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.89
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.88
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	91.81
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	91.59
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.51
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.45
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	91.43
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.4
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.39
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.3
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.17
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	91.12
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.03
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.8
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.79
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	90.76
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	90.64
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	90.56
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.49
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.39
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	90.32
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.2
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.19
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	90.15
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.14
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.08
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.07
4dna_A	463	Probable glutathione reductase; structural genomic	90.04
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	89.99
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.85
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.66
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.56
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.52
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.44
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.41
4ezb_A	317	Uncharacterized conserved protein; structural geno	89.32
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.17
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	89.17
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	89.14
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	89.08
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	89.07
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	89.05
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.86
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.67
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.59
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.54
3tl2_A	315	Malate dehydrogenase; center for structural genomi	88.44
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.4
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.33
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.26
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.14
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	88.13
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	88.11
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.03
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	87.95
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	87.94
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.93
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	87.82
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	87.8
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	87.74
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	87.7
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	87.67
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.6
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	87.52
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	87.5
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.49
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.47
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	87.44
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	87.43
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	87.34
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	87.15
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.13
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	87.07
3qha_A	296	Putative oxidoreductase; seattle structural genomi	87.06
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	87.04
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	87.04
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	87.01
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	87.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	86.97
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	86.81
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	86.75
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	86.69
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	86.63
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	86.57
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	86.55
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	86.55
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	86.55
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	86.51
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	86.48
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	86.37
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	86.26
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	86.12
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.08
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	86.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	85.97
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	85.9
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	85.88
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	85.85
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	85.79
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	85.73
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.67
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	85.5
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	85.5
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	85.46
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	85.35
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	85.34
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	85.26
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	85.16
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	85.07
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	84.95
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	84.93
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	84.86
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	84.81
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	84.71
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	84.69
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	84.67
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	84.61
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	84.41
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	84.36
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	84.32
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	84.32
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	84.28
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	84.27
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	84.27
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	84.26
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	84.2
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.13
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	84.04
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	84.04
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	84.02
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	83.98
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	83.87
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	83.74
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	83.64
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	83.6
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	83.6
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	83.6
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	83.59
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	83.58
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	83.57
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	83.57
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	83.5
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	83.49
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.38
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	83.36
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	83.31
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	83.29
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	83.25
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	83.12
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	83.12
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	82.7
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	82.65
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	82.6
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	82.25
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	82.16
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	82.14
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	81.97
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	81.88
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	81.79
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	81.74
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	81.5
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	81.4
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	81.32
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	81.21
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	81.06
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	81.05
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	80.98
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	80.96
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	80.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	80.89
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	80.88
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	80.84
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	80.73
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	80.72
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	80.61
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	80.57
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	80.52
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	80.39
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	80.3
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	80.13

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=100.00  E-value=6.9e-44  Score=324.96  Aligned_cols=260  Identities=65%  Similarity=1.065  Sum_probs=230.3

Q ss_pred             CCCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchh
Q 020815           61 NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSA  139 (321)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~  139 (321)
                      +.|.|.++.+..+++.+.++++..+....+|||+|||||++|+++|++|++. +|++|+|||+...+||++|.++..+..
T Consensus        50 ~~~~f~~i~~~~isra~~~~~~~~~~~~~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~  129 (344)
T 3jsk_A           50 DAFTFSPIRESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSA  129 (344)
T ss_dssp             TTCCCCCCCHHHHHHHHHHHHHHHHHHHHBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCC
T ss_pred             CCcCcccccHHHHHHHHHHhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchh
Confidence            7889999999999999999998776655679999999999999999999984 489999999999999999988888777


Q ss_pred             hhccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-----------------C
Q 020815          140 MVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-----------------G  202 (321)
Q Consensus       140 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-----------------~  202 (321)
                      ........++++++|++|+..+.+....+..++.+.|++++.+..|+++++++.+++++.++                 +
T Consensus       130 ~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g  209 (344)
T 3jsk_A          130 MVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEA  209 (344)
T ss_dssp             EEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------C
T ss_pred             hhcchHHHHHHHHcCCcccccCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCC
Confidence            77667778999999999987767777777888999999999865799999999999999876                 3


Q ss_pred             --EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhccc
Q 020815          203 --RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLT  280 (321)
Q Consensus       203 --~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  280 (321)
                        +|.||.+.|..+..+...+.+.+..+|+|++||+|||+.+++.....+++.+++..+.+++++++|++..|+.++.++
T Consensus       210 ~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t  289 (344)
T 3jsk_A          210 KVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNT  289 (344)
T ss_dssp             CEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTC
T ss_pred             CceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccC
Confidence              899999987544444433233456799999999999999999999999999999988899999999999999999999


Q ss_pred             ccccccccccccchhhcCCCCCCCcceeeeeeecchhccc
Q 020815          281 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM  320 (321)
Q Consensus       281 ~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  320 (321)
                      ++++||+|++||++.+++|.|||||+||+|++||+|||++
T Consensus       290 ~~v~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~  329 (344)
T 3jsk_A          290 REIVPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHE  329 (344)
T ss_dssp             EEEETTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHH
T ss_pred             ceEcCCEEEechhhHhhcCCCCCCcccceeeecCHHHHHH
Confidence            9999999999999999999999999999999999999985

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=100.00  E-value=2.8e-38  Score=286.57  Aligned_cols=261  Identities=59%  Similarity=0.971  Sum_probs=219.0

Q ss_pred             CCCCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccch
Q 020815           60 LNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFS  138 (321)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~  138 (321)
                      +..+.+.++.+....+.+..+++..+....++||+|||||++|+++|+.|++. +|.+|+|+|+...+||+.|.++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~  114 (326)
T 2gjc_A           35 WSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFS  114 (326)
T ss_dssp             CTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCC
T ss_pred             CCccccccccccccchhhhhhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccc
Confidence            33344555566677777888888877777789999999999999999999984 37999999999999998888877776


Q ss_pred             hhhccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC----C--EEEEEEEeec
Q 020815          139 AMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG----G--RVGGVVTNWA  212 (321)
Q Consensus       139 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~----~--~v~gv~~~~~  212 (321)
                      .........++++++|+++.....+....+...+...|++++.+..|++++++++|++++.++    +  +|.||.+.|.
T Consensus       115 ~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~  194 (326)
T 2gjc_A          115 AMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWT  194 (326)
T ss_dssp             CEEEETTTHHHHHHTTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEH
T ss_pred             hhhhhhHHHHHHHhhCcccccCCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecce
Confidence            666666678899999999987777777778888899999999866799999999999999873    5  8999999875


Q ss_pred             ceecccCCCCCCCceEEEc---------------CeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhh
Q 020815          213 LVSMNHDTQSCMDPNVMEA---------------KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIV  277 (321)
Q Consensus       213 ~~~~~~~~~~~g~~~~i~a---------------~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  277 (321)
                      .+..+..++.+.+..+|.|               ++||+|||+.+++.....+++..++....+.+++++|.+..|+.++
T Consensus       195 ~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~  274 (326)
T 2gjc_A          195 LVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVV  274 (326)
T ss_dssp             HHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHH
T ss_pred             eecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhhee
Confidence            4444332223345678999               9999999999999988888888888877899999999999999999


Q ss_pred             ccccc--ccccccccccchhhcCCCCCCCcceeeeeeecchhccc
Q 020815          278 RLTRE--VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM  320 (321)
Q Consensus       278 ~~~~~--~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  320 (321)
                      +++++  ++||+|++||++.+++|.|||||+||+|++||+|||++
T Consensus       275 ~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~  319 (326)
T 2gjc_A          275 IHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQ  319 (326)
T ss_dssp             HHCEECTTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHH
T ss_pred             ecCCCccccCCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHH
Confidence            99999  99999999999999999999999999999999999985

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=100.00  E-value=3e-33  Score=251.16  Aligned_cols=265  Identities=90%  Similarity=1.358  Sum_probs=212.6

Q ss_pred             CCCCCCCCCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc
Q 020815           55 SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG  134 (321)
Q Consensus        55 ~a~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g  134 (321)
                      .++.+++.|.|.++++..+++.|.++|+.+|....++||+|||||++|+++|+.|++.+|++|+|||+...+++++|.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~   83 (284)
T 1rp0_A            4 SAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGG   83 (284)
T ss_dssp             ---CCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCS
T ss_pred             ccCCCCcceeeeccchhhhHHHHHHHHHHhhhhccccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCC
Confidence            45678899999999999999999999988776556899999999999999999999943899999999998998888877


Q ss_pred             ccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecce
Q 020815          135 QLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV  214 (321)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~  214 (321)
                      ..+..........++++++|++|.....+....+...+...|++++.++.|++++++++|+++..+++++.+|.+.+..+
T Consensus        84 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~  163 (284)
T 1rp0_A           84 QLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALV  163 (284)
T ss_dssp             TTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHH
T ss_pred             cchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEecccc
Confidence            77666666666678999999999877666666677888888888887668999999999999999999998888754211


Q ss_pred             ecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccch
Q 020815          215 SMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       215 ~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~  294 (321)
                      .++..++.+++..+++||.||+|+|+.+.......+.+...+....+...++++.+..+..++...++..|++|++|+.+
T Consensus       164 ~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~  243 (284)
T 1rp0_A          164 AQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEV  243 (284)
T ss_dssp             HTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHH
T ss_pred             ccccCccccCceEEEECCEEEECCCCchHHHHHHHHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeeh
Confidence            11211111124478999999999999988766555555555554455566778777666566667778889999999999


Q ss_pred             hhcCCCCCCCcceeeeeeecchhcc
Q 020815          295 AEIDGAPRMGPTFGAMMISGQKAAR  319 (321)
Q Consensus       295 ~~~~g~~~~~~~~~~~~~~~~~~~~  319 (321)
                      ..+.|.|++||+|++|+.||.+||.
T Consensus       244 ~~~~g~~~~gp~~~~~~~sG~~~a~  268 (284)
T 1rp0_A          244 AEIDGAPRMGPTFGAMMISGQKAGQ  268 (284)
T ss_dssp             HHHHTCEECCSCCHHHHHHHHHHHH
T ss_pred             hhhcCCCCcChHHHHHHHhHHHHHH
Confidence            9999999999999999999999985

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.73  E-value=3.4e-17  Score=142.15  Aligned_cols=190  Identities=22%  Similarity=0.269  Sum_probs=120.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      +|||+|||||++|+.+|+.|++. |.+|+|||+.....| .+..... .. .....   .+.++.   +.. ..    +.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie~~~~~~G-~~~~~~~-~~-~~~~~---~~~~~~---d~~-g~----~~   67 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQSLDAVM-MPFLPPK-PP-FPPGS---LLERAY---DPK-DE----RV   67 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTT-CCSSCCC-SC-CCTTC---HHHHHC---CTT-CC----CH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCCCcCC-cccCccc-cc-cchhh---HHhhhc---cCC-CC----CH
Confidence            58999999999999999999999 999999999743223 2211100 00 00011   112221   010 10    44


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCc----
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG----  245 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~----  245 (321)
                      ..+...|.+.+.+..|++++. ++|+++..+++++.+|.+.+              +.+++||.||+|+|.++...    
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~--------------g~~i~a~~VV~A~G~~s~~~~~~G  132 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWE--------------GPPARGEKVVLAVGSFLGARLFLG  132 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETT--------------SCCEECSEEEECCTTCSSCEEEET
T ss_pred             HHHHHHHHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECC--------------CCEEECCEEEECCCCChhhceecC
Confidence            567777777776435999995 69999998888887777642              24799999999999865421    


Q ss_pred             --------------chhhhhhhhcCCcc--------cccCC-------ceeecccccchhhcccccccccccccccchhh
Q 020815          246 --------------ATGVKRLKSIGMIE--------EVPGM-------KALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       246 --------------~~~~~~~~~~g~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                                    ....+.+.+.++..        .+.+.       ..++....+..++..+  .+|++|++|+++  
T Consensus       133 ~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t--~~p~iya~G~~a--  208 (232)
T 2cul_A          133 GVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLK--RLEGLYAVGLCV--  208 (232)
T ss_dssp             TEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEET--TSBSEEECGGGT--
T ss_pred             CccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCcccccc--ccccceeeeecc--
Confidence                          01123333444310        00111       2334444444444434  789999999999  


Q ss_pred             cCCCCCCCcceeeeeeecchhcc
Q 020815          297 IDGAPRMGPTFGAMMISGQKAAR  319 (321)
Q Consensus       297 ~~g~~~~~~~~~~~~~~~~~~~~  319 (321)
                      ..|      +|+.|+.+|+++|.
T Consensus       209 ~~g------~~~~~~~~g~~~a~  225 (232)
T 2cul_A          209 REG------DYARMSEEGKRLAE  225 (232)
T ss_dssp             SCC------CHHHHHHHHHHHHH
T ss_pred             cCc------cHHHHHHHHHHHHH
Confidence            433      89999999999885

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.66  E-value=1.2e-15  Score=141.26  Aligned_cols=132  Identities=21%  Similarity=0.281  Sum_probs=95.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCccc----------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE----------  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~----------  159 (321)
                      +|||+||||||+|+++|+.|++. |++|+||||.+.++.....++.+..         +.++++++....          
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~-G~~V~v~Er~~~~~~~~~~g~~l~~---------~~l~~l~~~~~~~~~~~~~~~~   73 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPEIGSPVRCGEGLSK---------GILNEADIKADRSFIANEVKGA   73 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSTTCSCCSCCEEET---------HHHHHTTCCCCTTTEEEEESEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCCCceecccCH---------HHHHHcCCCchhhhhhcccceE
Confidence            59999999999999999999999 9999999998776643322332221         123333332110          


Q ss_pred             ------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC
Q 020815          160 ------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (321)
Q Consensus       160 ------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~  221 (321)
                                        .....+..+...+...|.+.+. +.|++++.+++++++..+++++.++....          
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~-~~G~~~~~~~~v~~~~~~~~~~~~v~~~~----------  142 (397)
T 3oz2_A           74 RIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAA-KAGADVWVKSPALGVIKENGKVAGAKIRH----------  142 (397)
T ss_dssp             EEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHH-HHTCEEESSCCEEEEEEETTEEEEEEEEE----------
T ss_pred             EEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHH-hcCcEEeeeeeeeeeeeccceeeeeeecc----------
Confidence                              0112234466778888888886 57999999999999999999988877642          


Q ss_pred             CCCCceEEEcCeEEEcCCCCCC
Q 020815          222 SCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       222 ~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                       +++..+++||+||.|+|..+.
T Consensus       143 -~~~~~~~~a~~vIgAdG~~S~  163 (397)
T 3oz2_A          143 -NNEIVDVRAKMVIAADGFESE  163 (397)
T ss_dssp             -TTEEEEEEEEEEEECCCTTCH
T ss_pred             -cccceEEEEeEEEeCCccccH
Confidence             123467999999999996653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.65  E-value=1.2e-15  Score=145.04  Aligned_cols=153  Identities=20%  Similarity=0.340  Sum_probs=107.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-c--------cchhh-----------------hc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-Q--------LFSAM-----------------VV  142 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-~--------~~~~~-----------------~~  142 (321)
                      .++||+|||||++|+++|+.|++. |.+|+||||.+.+|+.....+ .        .+..+                 ..
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~-G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN  103 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcC
Confidence            468999999999999999999999 999999999887764322111 0        00000                 00


Q ss_pred             cchHHHHHHHcCCCcccCCCeEEEe---cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815          143 RKPAHIFLDELGIDYDEQDNYVVIK---HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       143 ~~~~~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~  219 (321)
                      .....+|++++|+++........+.   ....+.+.|.+.+. +.|++++++++|++|..+++++.+|.+.+        
T Consensus       104 ~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~-~~GV~i~~~~~V~~i~~~~~~v~~V~~~~--------  174 (447)
T 2i0z_A          104 NEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK-DLGVKIRTNTPVETIEYENGQTKAVILQT--------  174 (447)
T ss_dssp             HHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT--------
T ss_pred             HHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEecCCcEEEEEECC--------
Confidence            1134577888888875442222222   45778888888887 57999999999999998888888887732        


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCCCC--cc--hhhhhhhhcCC
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDGPF--GA--TGVKRLKSIGM  257 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~~~--~~--~~~~~~~~~g~  257 (321)
                            +.+++||.||+|+|+++..  +.  .+++.....|+
T Consensus       175 ------G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~  210 (447)
T 2i0z_A          175 ------GEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGH  210 (447)
T ss_dssp             ------CCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTC
T ss_pred             ------CCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCC
Confidence                  2469999999999998732  22  23445555554

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.65  E-value=1.6e-15  Score=146.50  Aligned_cols=141  Identities=23%  Similarity=0.347  Sum_probs=101.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc----------------------hhh------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF----------------------SAM------  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~----------------------~~~------  140 (321)
                      .+|||||||+|++|+++|+.|++. |++|+||||....||++...+..+                      ...      
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~-G~~V~vlEk~~~~GG~s~~s~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~  118 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARA-GADVLVLERTSGWGGATALAGGFIYLGGGTPLQKACGFDDSPENMKTFMMAALGP  118 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTGGGSCCCEECCSSCHHHHHTTCCCCHHHHHHHHHHHSCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcchhcCcceecCCCCHHHHHhCCCCCHHHHHHHHHHHhCC
Confidence            369999999999999999999999 999999999988887653222100                      000      


Q ss_pred             ---------hc--cchHHHHHHHcCCCcccC-----------CC-eE---------------------EE---------e
Q 020815          141 ---------VV--RKPAHIFLDELGIDYDEQ-----------DN-YV---------------------VI---------K  167 (321)
Q Consensus       141 ---------~~--~~~~~~~l~~~g~~~~~~-----------~~-~~---------------------~~---------~  167 (321)
                               +.  ....++|++++|++|...           .. ..                     ..         .
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~r~~~~~~~~~~~g~~  198 (510)
T 4at0_A          119 GADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEK  198 (510)
T ss_dssp             SCCHHHHHHHHHTHHHHHHHHHHTTCCCCSCEECSSSSSCSSSCSEECCSSTTSTTGGGTSCCCCCEECCCCSSCBTTTB
T ss_pred             CCCHHHHHHHHHhhHHHHHHHHHcCCeecccccCCcccccCCcccccccCcccccccccccCcccceeeecccccccccC
Confidence                     00  012457888888877543           00 00                     00         0


Q ss_pred             cH-HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCC
Q 020815          168 HA-ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDG  242 (321)
Q Consensus       168 ~~-~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~  242 (321)
                      .. ..+...|.+.+. +.|++|+++++|++|+.+ +++|+||.+...           ++..+|+| |.||+|||+++
T Consensus       199 ~g~~~l~~~L~~~~~-~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~-----------g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          199 GGGYMLMKPLVETAE-KLGVRAEYDMRVQTLVTDDTGRVVGIVAKQY-----------GKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             CTTHHHHHHHHHHHH-HTTCEEECSEEEEEEEECTTCCEEEEEEEET-----------TEEEEEEEEEEEEECCCCCT
T ss_pred             CCHHHHHHHHHHHHH-HcCCEEEecCEeEEEEECCCCcEEEEEEEEC-----------CcEEEEEeCCeEEEeCCChh
Confidence            11 267888888887 469999999999999998 789999987531           12357999 49999999987

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.64  E-value=2.9e-15  Score=146.54  Aligned_cols=143  Identities=22%  Similarity=0.301  Sum_probs=103.2

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc----------------hhh----------h
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF----------------SAM----------V  141 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~----------------~~~----------~  141 (321)
                      .++||||||||++|+++|+.|++. |++|+||||.+..||.+.. ++.+.                ..+          .
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~-G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~  203 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNI  203 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            468999999999999999999999 9999999999888765432 22110                000          0


Q ss_pred             cc-----------chHHHHHHHcCCCcccC---C-----CeEEE----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815          142 VR-----------KPAHIFLDELGIDYDEQ---D-----NYVVI----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (321)
Q Consensus       142 ~~-----------~~~~~~l~~~g~~~~~~---~-----~~~~~----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~  198 (321)
                      ..           ...++|+.++|++|+..   .     .....    .....+...|.+.+. +.|++|+++++|++|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~-~~gv~i~~~~~v~~l~  282 (571)
T 1y0p_A          204 NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAV-KRNIDLRMNTRGIEVL  282 (571)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHH-HTTCEEESSEEEEEEE
T ss_pred             CCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHH-hcCCEEEeCCEeeEeE
Confidence            00           12457788889888531   1     11111    234678888888887 5799999999999999


Q ss_pred             EEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          199 VKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       199 ~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .++ ++|.||.+..          .+++..+++||.||+|||+++.
T Consensus       283 ~~~~g~v~Gv~~~~----------~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          283 KDDKGTVKGILVKG----------MYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             ECTTSCEEEEEEEE----------TTTEEEEEECSEEEECCCCCTT
T ss_pred             EcCCCeEEEEEEEe----------CCCcEEEEECCeEEEeCCCccc
Confidence            887 8999988752          1123357999999999999874

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.63  E-value=1.9e-15  Score=147.80  Aligned_cols=143  Identities=21%  Similarity=0.270  Sum_probs=103.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-cccch----------------h------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLFS----------------A------------  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~~~----------------~------------  139 (321)
                      .++||||||||++|+++|+.|++. |++|+||||...+||.+... +.+..                .            
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~-G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~  198 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ  198 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            479999999999999999999999 99999999998887654322 11100                0            


Q ss_pred             ---hh------ccchHHHHHHHcCCCcccC---C-----CeEEE----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815          140 ---MV------VRKPAHIFLDELGIDYDEQ---D-----NYVVI----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (321)
Q Consensus       140 ---~~------~~~~~~~~l~~~g~~~~~~---~-----~~~~~----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~  198 (321)
                         .+      .....++|+.++|++|...   .     .....    .....+...|.+.+. +.|++|+++++|++|+
T Consensus       199 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~-~~gv~i~~~~~v~~l~  277 (566)
T 1qo8_A          199 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAK-EQGIDTRLNSRVVKLV  277 (566)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHH-HTTCCEECSEEEEEEE
T ss_pred             CCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHH-hcCCEEEeCCEEEEEE
Confidence               00      0012456888889887531   1     11110    135678888888887 5799999999999999


Q ss_pred             EEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          199 VKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       199 ~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .++ ++|.||.+..          .+++..+++||.||+|||+++.
T Consensus       278 ~~~~g~v~Gv~~~~----------~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          278 VNDDHSVVGAVVHG----------KHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             ECTTSBEEEEEEEE----------TTTEEEEEEEEEEEECCCCCTT
T ss_pred             ECCCCcEEEEEEEe----------CCCcEEEEEcCEEEEecCCccc
Confidence            988 8999988752          1123357999999999999885

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.63  E-value=3.4e-15  Score=140.49  Aligned_cols=164  Identities=20%  Similarity=0.325  Sum_probs=112.7

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc----------ccchhh-----------h---ccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG----------QLFSAM-----------V---VRK  144 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g----------~~~~~~-----------~---~~~  144 (321)
                      .++||+|||||++|+++|+.|++. |.+|+|||+.+.+|+.....+          .....+           +   ...
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~-G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            368999999999999999999999 999999999987764321110          001100           0   112


Q ss_pred             hHHHHHHHcCCCcccCCC--eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCC
Q 020815          145 PAHIFLDELGIDYDEQDN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS  222 (321)
Q Consensus       145 ~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~  222 (321)
                      ...+++++.|+++.....  .........+.+.|.+.+. +.|++++++++|+++..+++. ..|.+.            
T Consensus       105 ~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~-~~Gv~i~~~~~V~~i~~~~~~-~~V~~~------------  170 (417)
T 3v76_A          105 DFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMK-EAGVQLRLETSIGEVERTASG-FRVTTS------------  170 (417)
T ss_dssp             HHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHH-HHTCEEECSCCEEEEEEETTE-EEEEET------------
T ss_pred             HHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCE-EEEEEC------------
Confidence            345778888988765432  2223456778888888886 579999999999999988775 334442            


Q ss_pred             CCCceEEEcCeEEEcCCCCCCC----cchhhhhhhhcCC--cccccCCceeecc
Q 020815          223 CMDPNVMEAKVVVSSCGHDGPF----GATGVKRLKSIGM--IEEVPGMKALDMN  270 (321)
Q Consensus       223 ~g~~~~i~a~~VI~AtG~~~~~----~~~~~~~~~~~g~--~~~~~~~~~~~~~  270 (321)
                        + .+++||.||+|+|+.+..    ...+++....+|+  .+..|...++...
T Consensus       171 --~-g~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~i~~~~p~l~~~~~~  221 (417)
T 3v76_A          171 --A-GTVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLPVVETRPALVPLTLD  221 (417)
T ss_dssp             --T-EEEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCCEEEEEEESCCEECC
T ss_pred             --C-cEEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCCEecccceeeeEEec
Confidence              1 379999999999988732    1145566666665  5566666666544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.61  E-value=1.8e-15  Score=148.80  Aligned_cols=143  Identities=24%  Similarity=0.286  Sum_probs=102.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccc-----------hhh----------hcc----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------SAM----------VVR----  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~-----------~~~----------~~~----  143 (321)
                      ++||||||||++|++||+.|++. |.+|+||||....++.+ +.+|.+.           ...          +.+    
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~-G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v   96 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEA-GFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI   96 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            68999999999999999999999 99999999986554432 2222110           000          001    


Q ss_pred             -------chHHHHHHHcCCCcccCCC--eE------------------EEe-----cHHHHHHHHHHHHHcCCCcEEEcC
Q 020815          144 -------KPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNA  191 (321)
Q Consensus       144 -------~~~~~~l~~~g~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~  191 (321)
                             ...++||.++|++|+....  +.                  ...     .+..+...|++++. +.|++|+++
T Consensus        97 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~-~~gv~i~~~  175 (621)
T 2h88_A           97 HYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSL-RYDTSYFVE  175 (621)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHT-TSCCEEEET
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHH-hCCCEEEEc
Confidence                   1245788889998865321  11                  000     24577888888886 689999999


Q ss_pred             ceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          192 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       192 ~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +.|++|+.++++|.||.+.+.         .+++...++|+.||+|||+++.
T Consensus       176 ~~v~~Li~~~g~v~Gv~~~~~---------~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          176 YFALDLLMENGECRGVIALCI---------EDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             EEEEEEEEETTEEEEEEEEET---------TTCCEEEEEEEEEEECCCCCGG
T ss_pred             eEEEEEEEECCEEEEEEEEEc---------CCCcEEEEEcCeEEECCCcccc
Confidence            999999999999999987421         1223458999999999999873

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.60  E-value=1.2e-14  Score=136.11  Aligned_cols=161  Identities=17%  Similarity=0.191  Sum_probs=109.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc----------cCcccchhhhc--------------cch
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFSAMVV--------------RKP  145 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~----------~~g~~~~~~~~--------------~~~  145 (321)
                      +|||+|||||++|+++|+.|++. |.+|+|||+++.+|+...          +.+..+..++.              ...
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~-G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhC-CCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            58999999999999999999999 999999999887653221          11111111110              112


Q ss_pred             HHHHHHHcCCCcccCCCeEEEe--cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE----CCEEEEEEEeecceecccC
Q 020815          146 AHIFLDELGIDYDEQDNYVVIK--HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHD  219 (321)
Q Consensus       146 ~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~----~~~v~gv~~~~~~~~~~~~  219 (321)
                      ..++++++|+++........+.  ....+.+.|.+.+. +.|++++++++|+++..+    ++.+ .|.+.         
T Consensus        83 ~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~-~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~---------  151 (401)
T 2gqf_A           83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECD-KYGAKILLRSEVSQVERIQNDEKVRF-VLQVN---------  151 (401)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHH-HHTCEEECSCCEEEEEECCSCSSCCE-EEEET---------
T ss_pred             HHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEcccCcCCCeE-EEEEC---------
Confidence            4577888998876532222222  56777788888776 579999999999999876    4543 34432         


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCCCCc--c--hhhhhhhhcCC--cccccCCceee
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDGPFG--A--TGVKRLKSIGM--IEEVPGMKALD  268 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~~~~--~--~~~~~~~~~g~--~~~~~~~~~~~  268 (321)
                           + .+++||.||+|||+.+...  .  .+++.....|+  .+..|+..++.
T Consensus       152 -----~-g~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~  200 (401)
T 2gqf_A          152 -----S-TQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFT  200 (401)
T ss_dssp             -----T-EEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEE
T ss_pred             -----C-CEEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeecee
Confidence                 1 3799999999999887321  1  34566666666  45566666654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.60  E-value=4.9e-15  Score=146.72  Aligned_cols=142  Identities=18%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCccc--------------ch----hh------hcc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------------FS----AM------VVR-  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~--------------~~----~~------~~~-  143 (321)
                      ++||||||||++|++||+.|++. |.+|+||||....+|.+ +..|.+              +.    ..      ... 
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~-G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~g~~ds~~~~~~dt~~~g~~~~d~   83 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQ   83 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCSCH
T ss_pred             cccEEEECchHHHHHHHHHHHHC-CCcEEEEeccCCCCCcccccCCCeEeccCCcccCCCCCHHHHHHHHHHhcCCCCCH
Confidence            68999999999999999999999 99999999986553322 211110              00    00      000 


Q ss_pred             ----------chHHHHHHHcCCCcccCCCeE---------------------E------------E-----ecHHHHHHH
Q 020815          144 ----------KPAHIFLDELGIDYDEQDNYV---------------------V------------I-----KHAALFTST  175 (321)
Q Consensus       144 ----------~~~~~~l~~~g~~~~~~~~~~---------------------~------------~-----~~~~~~~~~  175 (321)
                                ...++||.++|++|.......                     +            .     ..+..+...
T Consensus        84 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~g~~~~~l~~~e~~~~~~~~~~gg~~~~R~~~~~d~tG~~l~~~  163 (660)
T 2bs2_A           84 KVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFA  163 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCceecCCCcccccccccccccccchhhhhhhccccccccccceeEeeCCCCHHHHHHH
Confidence                      124578889999886532110                     0            0     114567788


Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      |++.+. +.|++|++++.|++|+.++++|.||.+.+.         .+|+...++||.||+|||+++
T Consensus       164 L~~~a~-~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~---------~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          164 VANECL-KLGVSIQDRKEAIALIHQDGKCYGAVVRDL---------VTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHH-HHTCEEECSEEEEEEEEETTEEEEEEEEET---------TTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHH-hCCCEEEECcEEEEEEecCCEEEEEEEEEC---------CCCcEEEEEcCEEEEccCcch
Confidence            888887 469999999999999999999999887421         112345799999999999987

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.57  E-value=9.1e-15  Score=142.00  Aligned_cols=144  Identities=26%  Similarity=0.377  Sum_probs=91.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccc-------------hhhh------c------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------SAMV------V------  142 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~-------------~~~~------~------  142 (321)
                      .++||||||||++|+++|+.|++  |.+|+||||....+|++ +.+|.+.             ...+      .      
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~--G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d~~~v~   84 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVE   84 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT--TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHhc--CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccCCHHHHH
Confidence            36899999999999999999998  79999999987766543 2222111             0000      0      


Q ss_pred             -----cchHHHHHHHcCCCcccCC------CeEE----------Ee-----cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815          143 -----RKPAHIFLDELGIDYDEQD------NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAED  196 (321)
Q Consensus       143 -----~~~~~~~l~~~g~~~~~~~------~~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (321)
                           ....++|+.++|++|+...      .+..          ..     .+..+...|.+++.+..|+++++++.|++
T Consensus        85 ~~~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~~~~v~~  164 (540)
T 1chu_A           85 FVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVD  164 (540)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEE
T ss_pred             HHHHhHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEEeCcEEEE
Confidence                 1134578889999886532      1110          00     12345566777777557999999999999


Q ss_pred             EEE-ECC------EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          197 LIV-KGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       197 l~~-~~~------~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      |+. +++      +|.||.+.+.         .+++..+++||.||+|||+++.
T Consensus       165 L~~~~~g~~~~~~~v~Gv~~~~~---------~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          165 LIVSDKIGLPGTRRVVGAWVWNR---------NKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             EEEGGGTTCCSSCBEEEEEEEET---------TTTEEEEEECSEEEECCCCCGG
T ss_pred             EEEcCCCCcccCCEEEEEEEEEc---------CCCcEEEEEcCeEEECCCCccc
Confidence            998 546      8999887530         1123358999999999999873

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.57  E-value=6.4e-15  Score=145.86  Aligned_cols=145  Identities=15%  Similarity=0.293  Sum_probs=103.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCc--ccc--------hh---------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGG--QLF--------SA---------------  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~liEk~~~~gg~~~~~g--~~~--------~~---------------  139 (321)
                      ++||||||+|++||+||+.|++.     ||++|+||||....+++++..|  .+.        ..               
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s~AqG~~gi~a~l~~ds~e~~~~~~~~~~~gl~d~  101 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRTDLMGLVRE  101 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCTTSCHHHHHHHHHHHTTTCCCH
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCcccccCcchheeecCCCCHHHHHHHHHHhcCCCccH
Confidence            68999999999999999999985     4899999999876655555544  210        00               


Q ss_pred             ----hhcc--chHHHHHHHcCCCcccC-CC--eE-------------------------EEecHHHHHHHHHHHHHcC-C
Q 020815          140 ----MVVR--KPAHIFLDELGIDYDEQ-DN--YV-------------------------VIKHAALFTSTIMSKLLAR-P  184 (321)
Q Consensus       140 ----~~~~--~~~~~~l~~~g~~~~~~-~~--~~-------------------------~~~~~~~~~~~l~~~~~~~-~  184 (321)
                          .+..  ...++||.++|++|+.. ..  +.                         ....+..+...|.+++.+. .
T Consensus       102 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~a~~~~~  181 (662)
T 3gyx_A          102 DLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAKNALG  181 (662)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccchhhhccccccccCccccccceecccCCHHHHHHHHHHHHHhcCC
Confidence                0000  13457889999998753 11  11                         1122446667777777643 2


Q ss_pred             CcEEEcCceEEEEEEECC---EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          185 NVKLFNAVAAEDLIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       185 gv~i~~~~~v~~l~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      |+++++++.+++|+.+++   +|.||.+.+.         .+++...|+|+.||+||||++.
T Consensus       182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNL---------RANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             TTTEECSEEECCCEECSSSTTBEEEEEEEES---------SSSCEEEEECSEEEECCCCBCS
T ss_pred             CcEEEEceEEEEEEEeCCccceEEEEEEEEc---------CCCcEEEEEeCEEEECCCcccc
Confidence            999999999999999877   9999987431         1224568999999999999873

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.56  E-value=5.1e-14  Score=137.73  Aligned_cols=143  Identities=21%  Similarity=0.318  Sum_probs=102.0

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-cccc----------------hhh-----------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLF----------------SAM-----------  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~~----------------~~~-----------  140 (321)
                      .++||+|||+|++|+++|+.|++. |.+|+|||+.+.+||.+... +.+.                ..+           
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~-g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~  203 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI  203 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSS-SCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            368999999999999999999999 99999999998887654322 1110                000           


Q ss_pred             ----h------ccchHHHHHHHcCCCcccC---CC--eE--EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815          141 ----V------VRKPAHIFLDELGIDYDEQ---DN--YV--VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (321)
Q Consensus       141 ----~------~~~~~~~~l~~~g~~~~~~---~~--~~--~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~  198 (321)
                          +      .....++|+.+.|++|+..   ..  +.  ..     .....+...|.+.+. +.|++++++++|++|+
T Consensus       204 ~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~  282 (572)
T 1d4d_A          204 NDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAV-KRGTDIRLNSRVVRIL  282 (572)
T ss_dssp             SCHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHH-HTTCEEESSEEEEEEE
T ss_pred             CCHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHH-HcCCeEEecCEEEEEE
Confidence                0      0012457888888887531   10  11  11     125677888888887 5699999999999999


Q ss_pred             EEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          199 VKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       199 ~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .++ ++|.||.+..          .+++..+++||.||+|||+++.
T Consensus       283 ~~~~g~v~GV~~~~----------~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          283 EDASGKVTGVLVKG----------EYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             EC--CCEEEEEEEE----------TTTEEEEEECSEEEECCCCCTT
T ss_pred             ECCCCeEEEEEEEe----------CCCcEEEEEcCEEEEeCCCCcc
Confidence            887 8999988752          1123357999999999999874

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.56  E-value=2.5e-14  Score=140.25  Aligned_cols=142  Identities=20%  Similarity=0.315  Sum_probs=100.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccc-----------h----h------hhcc----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------S----A------MVVR----  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~-----------~----~------~~~~----  143 (321)
                      ++||||||||++|+++|+.|++. |.+|+||||....+|.+ +..|.+.           .    .      ....    
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~-G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   85 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            68999999999999999999999 99999999987654332 2211110           0    0      0000    


Q ss_pred             -------chHHHHHHHcCCCcccCCC--eEE-----------------Ee-----cHHHHHHHHHHHHHcCCCcEEEcCc
Q 020815          144 -------KPAHIFLDELGIDYDEQDN--YVV-----------------IK-----HAALFTSTIMSKLLARPNVKLFNAV  192 (321)
Q Consensus       144 -------~~~~~~l~~~g~~~~~~~~--~~~-----------------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~  192 (321)
                             ...++|+.++|++|+....  +..                 ..     .+..+...|.+++. +.|++|++++
T Consensus        86 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~-~~gv~i~~~~  164 (588)
T 2wdq_A           86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSEW  164 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHH-HTTCEEEETE
T ss_pred             HHHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHH-hCCCEEEeCc
Confidence                   1245688889998865311  110                 00     13567788888887 4699999999


Q ss_pred             eEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          193 AAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       193 ~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .|++|+.+ +++|.||.+.+.         .+++..+++|+.||+|||+++
T Consensus       165 ~v~~L~~~~~g~v~Gv~~~~~---------~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          165 YALDLVKNQDGAVVGCTALCI---------ETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             EEEEEEECTTSCEEEEEEEET---------TTCCEEEEEEEEEEECCCCCG
T ss_pred             EEEEEEECCCCEEEEEEEEEc---------CCCeEEEEEcCEEEECCCCCc
Confidence            99999986 788999887421         112345799999999999976

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.56  E-value=2.8e-14  Score=140.21  Aligned_cols=144  Identities=22%  Similarity=0.264  Sum_probs=99.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCcc-ccCcccc--------------hh-----hhcc----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGA-WLGGQLF--------------SA-----MVVR----  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~~-~~~g~~~--------------~~-----~~~~----  143 (321)
                      ++||||||||++|+++|+.|++. |  .+|+||||....++.+ +..+.+.              +.     .+..    
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~-G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   83 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQA-NPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH-CTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhc-CCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            58999999999999999999998 8  9999999986544322 2222110              00     0000    


Q ss_pred             -------chHHHHHHHcCCCcccCCC--eE----------EEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815          144 -------KPAHIFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (321)
Q Consensus       144 -------~~~~~~l~~~g~~~~~~~~--~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~  199 (321)
                             ...++||.++|++|+....  +.          ...     .+..+...|++++.+..++++++++.|++|+.
T Consensus        84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~  163 (602)
T 1kf6_A           84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV  163 (602)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE
Confidence                   1345778889998865321  10          000     14577788888887433399999999999999


Q ss_pred             ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++++|.||.+.+.         .+|+..+++|+.||+|||+++.
T Consensus       164 ~~g~v~Gv~~~~~---------~~G~~~~i~A~~VVlAtGg~s~  198 (602)
T 1kf6_A          164 DDGHVRGLVAMNM---------MEGTLVQIRANAVVMATGGAGR  198 (602)
T ss_dssp             ETTEEEEEEEEET---------TTTEEEEEECSCEEECCCCCGG
T ss_pred             eCCEEEEEEEEEc---------CCCcEEEEEcCeEEECCCCCcc
Confidence            9999999876420         1123347999999999999773

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.54  E-value=2.9e-14  Score=141.26  Aligned_cols=145  Identities=20%  Similarity=0.335  Sum_probs=98.2

Q ss_pred             CcccEEEECCChHHHHHHHHhh---c-CCCCeEEEEeccCCCCCccccCccc-----c------------hhh-------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELS---K-NPNIQIAIIEQSVSPGGGAWLGGQL-----F------------SAM-------  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La---~-~~G~~V~liEk~~~~gg~~~~~g~~-----~------------~~~-------  140 (321)
                      .++||||||||++|++||+.|+   + . |.+|+||||....+++.+.+|..     +            ...       
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~-G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~   99 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLG-GLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLD   99 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT-TCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhC-CCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999   6 8 99999999987543333322210     0            000       


Q ss_pred             ---hcc-----------chHHHHHHHcCCCcccCCC--eE------EEecHHHHHHHHHHHHHcCCCc-EEEcCceEEEE
Q 020815          141 ---VVR-----------KPAHIFLDELGIDYDEQDN--YV------VIKHAALFTSTIMSKLLARPNV-KLFNAVAAEDL  197 (321)
Q Consensus       141 ---~~~-----------~~~~~~l~~~g~~~~~~~~--~~------~~~~~~~~~~~l~~~~~~~~gv-~i~~~~~v~~l  197 (321)
                         +..           ...++||.++|++|.....  +.      ....+..+...|.+.+.+..|+ ++++++.|++|
T Consensus       100 g~~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L  179 (643)
T 1jnr_A          100 MMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFEL  179 (643)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEE
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEE
Confidence               000           1245788889999865321  11      1112334566666666532389 99999999999


Q ss_pred             EEECC---EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          198 IVKGG---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       198 ~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      +.+++   +|.||.+.+.         .+++...++|+.||+|||+++.
T Consensus       180 ~~~~~~~g~v~Gv~~~~~---------~~g~~~~i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          180 LKDNNDPNAVAGAVGFSV---------REPKFYVFKAKAVILATGGATL  219 (643)
T ss_dssp             EECTTCTTBEEEEEEEES---------SSSCEEEEECSEEEECCCCBCS
T ss_pred             EEcCCccceeEEEEEEEe---------cCCcEEEEEcCEEEECCCcccc
Confidence            99877   9999886320         1123357999999999999874

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.53  E-value=6.7e-14  Score=128.42  Aligned_cols=139  Identities=17%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-Cccc-cCcccch-----------hhhcc-------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAW-LGGQLFS-----------AMVVR-------------  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~~-~~g~~~~-----------~~~~~-------------  143 (321)
                      ++||+|||||++|+++|++|++. |++|+||||+..++ +.++ ..+.+..           .+...             
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~-G~~V~vlE~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAG-GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARG   82 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSCSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCccCcCCccccccCccCCCCCHhHHHHHHHHHHHHHHHHHcC
Confidence            58999999999999999999999 99999999986443 2222 1111100           00000             


Q ss_pred             --------------c-------hHHHHHHHcCCC-cccC---------CC------e----EEEecHHHHHHHHHHHHHc
Q 020815          144 --------------K-------PAHIFLDELGID-YDEQ---------DN------Y----VVIKHAALFTSTIMSKLLA  182 (321)
Q Consensus       144 --------------~-------~~~~~l~~~g~~-~~~~---------~~------~----~~~~~~~~~~~~l~~~~~~  182 (321)
                                    .       ...+++...|++ +...         ..      .    ....+...+...|.+.+. 
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  161 (369)
T 3dme_A           83 VPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAE-  161 (369)
T ss_dssp             CCEECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHHHHHHH-
T ss_pred             CCcccCCEEEEecCHHHHHHHHHHHHHHHHcCCCceeecCHHHHHHhCCCceeeeeeECCCCEEECHHHHHHHHHHHHH-
Confidence                          0       011222334433 1110         00      0    012345677888888886 


Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +.|++++++++|++|..+++.+..|.+.+            |+..+++||.||+|+|.++
T Consensus       162 ~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~------------g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          162 SDGAQLVFHTPLIAGRVRPEGGFELDFGG------------AEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HTTCEEECSCCEEEEEECTTSSEEEEECT------------TSCEEEEEEEEEECCGGGH
T ss_pred             HCCCEEECCCEEEEEEEcCCceEEEEECC------------CceeEEEeCEEEECCCcch
Confidence            57999999999999998776534455521            2336899999999999553

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.53  E-value=1.2e-13  Score=133.35  Aligned_cols=142  Identities=17%  Similarity=0.228  Sum_probs=95.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchh----hhccchHHHHHHHcCCCccc------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA----MVVRKPAHIFLDELGIDYDE------  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~----~~~~~~~~~~l~~~g~~~~~------  159 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+...+...  .+......    .+......+.+...+.....      
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~-G~~V~liE~~~~~~~~--~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   83 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAFPRHQ--IGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRW   83 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCSSCCC--SCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCCEEEEccCCCCCCC--CCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEe
Confidence            58999999999999999999999 9999999998643211  11111110    01000111222222222110      


Q ss_pred             -----------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCC
Q 020815          160 -----------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS  222 (321)
Q Consensus       160 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~  222 (321)
                                       ...+....+...+.+.|.+.+. +.|++++++++|+++..+++++.+|.+..          .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~-~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~----------~  152 (512)
T 3e1t_A           84 GKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSE-RKGVDVRERHEVIDVLFEGERAVGVRYRN----------T  152 (512)
T ss_dssp             SSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHH-HTTCEEESSCEEEEEEEETTEEEEEEEEC----------S
T ss_pred             cCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEECCEEEEEEEEe----------C
Confidence                             0122334566788888888887 48999999999999999999998887743          1


Q ss_pred             CCCceEEEcCeEEEcCCCCCCCc
Q 020815          223 CMDPNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       223 ~g~~~~i~a~~VI~AtG~~~~~~  245 (321)
                      +|+..+++||.||+|+|..+.+.
T Consensus       153 dG~~~~i~ad~VI~AdG~~S~vr  175 (512)
T 3e1t_A          153 EGVELMAHARFIVDASGNRTRVS  175 (512)
T ss_dssp             SSCEEEEEEEEEEECCCTTCSSG
T ss_pred             CCCEEEEEcCEEEECCCcchHHH
Confidence            22335899999999999877543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.53  E-value=1.2e-13  Score=131.32  Aligned_cols=135  Identities=24%  Similarity=0.384  Sum_probs=94.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-CccccCcccchhhhccchHHHHHHHcCCCccc---------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE---------  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~---------  159 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+...+. |..+.+..+         ..+.++++|+....         
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~-G~~V~vlE~~~~~~~g~~~~g~~l---------~~~~l~~lg~~~~~~~~~~~~~~   75 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWNRIGDKPCGDAV---------SKAHFDKLGMPYPKGEELENKIN   75 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSS-SCCEEEECSSCGGGTTCSCCCCEE---------EHHHHHHTTCCCCCGGGEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCcccccccc---------cHHHHHHhcCCCCchHHHHhhhc
Confidence            58999999999999999999999 99999999986542 222222211         12344444432110         


Q ss_pred             -------CC-------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          160 -------QD-------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       160 -------~~-------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                             ..       ......+...+.+.|.+.+. +.|++++++++|+++..+++++.+|.+...         .+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~-~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~---------~~G~  145 (453)
T 3atr_A           76 GIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQ-DRGVEIWDLTTAMKPIFEDGYVKGAVLFNR---------RTNE  145 (453)
T ss_dssp             EEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHH-HTTCEEESSEEEEEEEEETTEEEEEEEEET---------TTTE
T ss_pred             ceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHH-HcCCEEEeCcEEEEEEEECCEEEEEEEEEc---------CCCc
Confidence                   00       01123456778888888887 479999999999999999998888776420         0123


Q ss_pred             ceEEEcCeEEEcCCCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~  244 (321)
                      ..+++||.||+|+|..+..
T Consensus       146 ~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A          146 ELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEECSEEEECCGGGCTT
T ss_pred             eEEEEcCEEEECcCCchhh
Confidence            3589999999999977654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.52  E-value=1.2e-13  Score=132.16  Aligned_cols=135  Identities=18%  Similarity=0.277  Sum_probs=96.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCccc---------chhhh----------c---------
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL---------FSAMV----------V---------  142 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~---------~~~~~----------~---------  142 (321)
                      ||||||+|++|+++|+.|++. |++|+||||. ..+|.+ +.+|.+         +...+          .         
T Consensus         1 DVvVIG~G~AGl~aA~~la~~-G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~   78 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRA-GKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVT   78 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence            899999999999999999999 9999999998 555543 322221         10000          0         


Q ss_pred             --cchHHHHHHHcCCCcccC----C--CeEEE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEE
Q 020815          143 --RKPAHIFLDELGIDYDEQ----D--NYVVI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVT  209 (321)
Q Consensus       143 --~~~~~~~l~~~g~~~~~~----~--~~~~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~  209 (321)
                        ....++++.++|++|+..    .  .+...     .....+...|.+++. +.|++++++++| +|..+++++.|+.+
T Consensus        79 ~~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~-~~gv~i~~~~~v-~l~~~~~~v~Gv~v  156 (472)
T 2e5v_A           79 SEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAR-EEGIPIIEDRLV-EIRVKDGKVTGFVT  156 (472)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHH-HTTCCEECCCEE-EEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHH-hCCCEEEECcEE-EEEEeCCEEEEEEE
Confidence              013457788899988751    1  11111     124567788888884 689999999999 99989999988876


Q ss_pred             eecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          210 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ..             +..+++||.||+|||+++.
T Consensus       157 ~~-------------~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          157 EK-------------RGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TT-------------TEEECCCSEEEECCCCCGG
T ss_pred             Ee-------------CCCeEEeeeEEECCCCCcc
Confidence            32             1135779999999998873

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.51  E-value=3.7e-13  Score=129.56  Aligned_cols=142  Identities=20%  Similarity=0.212  Sum_probs=94.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      .++||+|||||++|+++|+.|++. |++|+||||...++...  .+     ........+.++++|+.            
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~~~~~~--r~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~   81 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLA-GVEVVVLERLVERTGES--RG-----LGFTARTMEVFDQRGILPRFGEVETSTQG   81 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCCC-CCCC--CS-----EEECHHHHHHHHTTTCGGGGCSCCBCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCC--Cc-----ceECHHHHHHHHHCCCHHHHHhccccccc
Confidence            479999999999999999999999 99999999987654221  01     11122333444444431            


Q ss_pred             ------cc--cC---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          157 ------YD--EQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       157 ------~~--~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                            ++  ..   ..+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. +.+.++          +| 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~----------~g-  148 (500)
T 2qa1_A           82 HFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWAT-GLGADIRRGHEVLSLTDDGAGVT-VEVRGP----------EG-  148 (500)
T ss_dssp             EETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHH-HTTCEEEETCEEEEEEEETTEEE-EEEEET----------TE-
T ss_pred             cccceecccccCCCCCCceeecCHHHHHHHHHHHHH-HCCCEEECCcEEEEEEEcCCeEE-EEEEcC----------CC-
Confidence                  00  00   012234456777788888876 46999999999999999888655 444321          11 


Q ss_pred             ceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          226 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                      ..+++||+||.|+|.+     |.+|+..++.
T Consensus       149 ~~~~~a~~vVgADG~~-----S~VR~~lg~~  174 (500)
T 2qa1_A          149 KHTLRAAYLVGCDGGR-----SSVRKAAGFD  174 (500)
T ss_dssp             EEEEEESEEEECCCTT-----CHHHHHTTCC
T ss_pred             CEEEEeCEEEECCCcc-----hHHHHHcCCC
Confidence            2479999999999954     4455554443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.50  E-value=4.2e-13  Score=129.12  Aligned_cols=142  Identities=24%  Similarity=0.266  Sum_probs=95.9

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      .++||+|||||++|+++|+.|++. |++|+||||...+....  .+     ........+.++++|+.            
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~~~~~~--r~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~   82 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLG-GVDVMVLEQLPQRTGES--RG-----LGFTARTMEVFDQRGILPAFGPVETSTQG   82 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCSSCCCCC--CS-----EEECHHHHHHHHHTTCGGGGCSCCEESEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCC--ce-----eEECHHHHHHHHHCCCHHHHHhccccccc
Confidence            479999999999999999999999 99999999987653211  01     11222334455555442            


Q ss_pred             ------ccc-----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          157 ------YDE-----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       157 ------~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                            ++.     ...+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. |.+.++          +| 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~----------~g-  149 (499)
T 2qa2_A           83 HFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWAL-GRGAELLRGHTVRALTDEGDHVV-VEVEGP----------DG-  149 (499)
T ss_dssp             EETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHH-HTTCEEEESCEEEEEEECSSCEE-EEEECS----------SC-
T ss_pred             eecceecccccCCCCCCceEecCHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEE-EEEEcC----------CC-
Confidence                  000     0112344566778888888887 46999999999999998877554 433220          11 


Q ss_pred             ceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          226 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                      ..+++||+||.|+|.+     |.+|+..++.
T Consensus       150 ~~~~~a~~vVgADG~~-----S~VR~~lg~~  175 (499)
T 2qa2_A          150 PRSLTTRYVVGCDGGR-----STVRKAAGFD  175 (499)
T ss_dssp             EEEEEEEEEEECCCTT-----CHHHHHTTCC
T ss_pred             cEEEEeCEEEEccCcc-----cHHHHHcCCC
Confidence            2579999999999954     4556555443

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.50  E-value=1.4e-13  Score=127.08  Aligned_cols=135  Identities=17%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-CccccCcccch------------------------hh---
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAWLGGQLFS------------------------AM---  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~~~~g~~~~------------------------~~---  140 (321)
                      .++||+|||||++|+++|++|+ + |.+|+|||+++.+| +.++..+..+.                        .+   
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~-G~~V~vlE~~~~~g~~as~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-A-HGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCEH   85 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-T-TSCEEEECSSSSTTSSGGGSCCCEECSSSSCHHHHHHHHHHHHHHHSCCTTSCSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-C-CCCEEEEECCCCccccccccccceeecccCCHHHHHHHHHHHHHHHHhhhhhCCc
Confidence            3689999999999999999999 7 99999999986565 33322111100                        00   


Q ss_pred             --hc---------cc------hHHHHHHHcCCCcccC------------------CCeE----EEecHHHHHHHHHHHHH
Q 020815          141 --VV---------RK------PAHIFLDELGIDYDEQ------------------DNYV----VIKHAALFTSTIMSKLL  181 (321)
Q Consensus       141 --~~---------~~------~~~~~l~~~g~~~~~~------------------~~~~----~~~~~~~~~~~l~~~~~  181 (321)
                        ..         ..      ...+++...|+++...                  ..+.    ...+...+...|.+.+.
T Consensus        86 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~  165 (381)
T 3nyc_A           86 PLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIR  165 (381)
T ss_dssp             CSEEECCEEEECSSCCHHHHHHHHHHHHHHCTTCEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHHHHHHHHHH
T ss_pred             ccccccceEEEechHHHHHHHHHHHHHHHcCCCcEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHHHHHHHHHH
Confidence              00         00      1122333444432110                  0000    12356788888888887


Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       +.|++++++++|++|..+++. ++|.+.               ..+++||.||+|+|.++
T Consensus       166 -~~Gv~i~~~~~V~~i~~~~~~-~~V~t~---------------~g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          166 -RNQGQVLCNHEALEIRRVDGA-WEVRCD---------------AGSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             -HTTCEEESSCCCCEEEEETTE-EEEECS---------------SEEEEESEEEECCGGGH
T ss_pred             -HCCCEEEcCCEEEEEEEeCCe-EEEEeC---------------CCEEEcCEEEECCChhH
Confidence             579999999999999988876 445542               14799999999999543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.49  E-value=9.2e-14  Score=134.60  Aligned_cols=149  Identities=17%  Similarity=0.234  Sum_probs=100.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC---------------------------ccccCcccchhhh-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG---------------------------GAWLGGQLFSAMV-  141 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg---------------------------~~~~~g~~~~~~~-  141 (321)
                      ++||||||||++|+++|+.|++. |++|+|||++..+++                           +.|..+.+..... 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~-G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~  185 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQM-GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD  185 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHT-TCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecc
Confidence            58999999999999999999999 999999999864421                           1111111111111 


Q ss_pred             ---ccchHHHHHHHcCCCcccCCCe-E--EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeeccee
Q 020815          142 ---VRKPAHIFLDELGIDYDEQDNY-V--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (321)
Q Consensus       142 ---~~~~~~~~l~~~g~~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~  215 (321)
                         ......+++.++|.+....... .  -......+...|.+.+. +.|++++++++|+++..+++++.+|.+.+    
T Consensus       186 ~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~-~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~----  260 (549)
T 3nlc_A          186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATII-ELGGEIRFSTRVDDLHMEDGQITGVTLSN----  260 (549)
T ss_dssp             TTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHH-HTTCEEESSCCEEEEEESSSBEEEEEETT----
T ss_pred             ccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHH-hcCCEEEeCCEEEEEEEeCCEEEEEEECC----
Confidence               1123456777788764332111 1  11233567777788776 46999999999999999888888888743    


Q ss_pred             cccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCC
Q 020815          216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM  257 (321)
Q Consensus       216 ~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~  257 (321)
                                +.+++||.||+|+|+.+.   .+.+.+...++
T Consensus       261 ----------G~~i~Ad~VVlA~G~~s~---~~~~~l~~~Gi  289 (549)
T 3nlc_A          261 ----------GEEIKSRHVVLAVGHSAR---DTFEMLHERGV  289 (549)
T ss_dssp             ----------SCEEECSCEEECCCTTCH---HHHHHHHHTTC
T ss_pred             ----------CCEEECCEEEECCCCChh---hHHHHHHHcCC
Confidence                      257999999999997653   23344444443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.48  E-value=8.1e-13  Score=123.91  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=87.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC---CccccCcccchhhhccchHHHHHHHcCCCccc-------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG---GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-------  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g---g~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~-------  159 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+...+.   |.+....+.  ..+......+.+.+.++....       
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~-G~~V~v~E~~~~~~~~~g~~~~~~~~--~~l~~~g~~~~~~~~~~~~~~~~~~~~~   81 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFPRFVIGESLLPRCM--EHLDEAGFLDAVKAQGFQQKFGAKFVRG   81 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCSSCCCSCCBCCGGGH--HHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCCCcccCcccHhHH--HHHHHcCChHHHHHcCCcccCCcEEEeC
Confidence            58999999999999999999999 99999999986432   111110000  000000111222222221110       


Q ss_pred             --------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEE-EEEEeecceecccCCCCCC
Q 020815          160 --------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG-GVVTNWALVSMNHDTQSCM  224 (321)
Q Consensus       160 --------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~-gv~~~~~~~~~~~~~~~~g  224 (321)
                                    ...+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. .+.+.            +|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~-~~gv~i~~~~~v~~i~~~~~~~~v~v~~~------------~g  148 (421)
T 3nix_A           82 KEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAA-RQGVDVEYEVGVTDIKFFGTDSVTTIEDI------------NG  148 (421)
T ss_dssp             TEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHH-HHTCEEECSEEEEEEEEETTEEEEEEEET------------TS
T ss_pred             CeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEEEEEEcC------------CC
Confidence                          0122334566788888888887 46999999999999998876543 23321            12


Q ss_pred             CceEEEcCeEEEcCCCCC
Q 020815          225 DPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       225 ~~~~i~a~~VI~AtG~~~  242 (321)
                      +..+++||.||+|+|..+
T Consensus       149 ~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          149 NKREIEARFIIDASGYGR  166 (421)
T ss_dssp             CEEEEEEEEEEECCGGGC
T ss_pred             CEEEEEcCEEEECCCCch
Confidence            334799999999999544

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.47  E-value=4.6e-13  Score=123.96  Aligned_cols=136  Identities=18%  Similarity=0.280  Sum_probs=90.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccch--------------------hh-------h-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS--------------------AM-------V-  141 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~--------------------~~-------~-  141 (321)
                      ++||+|||||++|+++|++|++. |.+|+|||+....++.+...+....                    .+       + 
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~-G~~V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~   83 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYGFSFK   83 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            68999999999999999999999 9999999998543333222111100                    00       0 


Q ss_pred             -------c-cc-------hHHHHHHHcCCCcccC--------------CCe--EE------EecHHHHHHHHHHHHHcCC
Q 020815          142 -------V-RK-------PAHIFLDELGIDYDEQ--------------DNY--VV------IKHAALFTSTIMSKLLARP  184 (321)
Q Consensus       142 -------~-~~-------~~~~~l~~~g~~~~~~--------------~~~--~~------~~~~~~~~~~l~~~~~~~~  184 (321)
                             . ..       ...+++.++|+++...              ..+  ..      ..+...+...|.+.+. +.
T Consensus        84 ~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~  162 (382)
T 1y56_B           84 QTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAK-EY  162 (382)
T ss_dssp             CCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHHHHH-HT
T ss_pred             ccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHHHHHH-HC
Confidence                   0 00       0112233445432210              000  00      2345778888888886 57


Q ss_pred             CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       185 gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      |++++++++|+++..+++++.+|.+.+               .+++||.||+|+|.++
T Consensus       163 Gv~i~~~~~v~~i~~~~~~v~gv~~~~---------------g~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          163 GAKLLEYTEVKGFLIENNEIKGVKTNK---------------GIIKTGIVVNATNAWA  205 (382)
T ss_dssp             TCEEECSCCEEEEEESSSBEEEEEETT---------------EEEECSEEEECCGGGH
T ss_pred             CCEEECCceEEEEEEECCEEEEEEECC---------------cEEECCEEEECcchhH
Confidence            999999999999998888888777632               3799999999999543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.47  E-value=5.8e-13  Score=132.79  Aligned_cols=137  Identities=15%  Similarity=0.198  Sum_probs=89.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-CccccC-cccchhhhcc------------chHHHHHHHc--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAWLG-GQLFSAMVVR------------KPAHIFLDEL--  153 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~~~~-g~~~~~~~~~------------~~~~~~l~~~--  153 (321)
                      .+||||||||++|+++|+.|++. |++|+|||++..+| |.++.. |.+.......            ....++++++  
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRR-GWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPV  350 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCC
Confidence            48999999999999999999999 99999999976555 333322 2211100000            0111222222  


Q ss_pred             ----------------------------CCCcc---c--------------C-CCe----EEEecHHHHHHHHHHHHHcC
Q 020815          154 ----------------------------GIDYD---E--------------Q-DNY----VVIKHAALFTSTIMSKLLAR  183 (321)
Q Consensus       154 ----------------------------g~~~~---~--------------~-~~~----~~~~~~~~~~~~l~~~~~~~  183 (321)
                                                  +++..   .              . ...    ....+...+...|.+.+. +
T Consensus       351 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~-~  429 (676)
T 3ps9_A          351 KFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQ-Q  429 (676)
T ss_dssp             CCCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHH-H
T ss_pred             CcCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHH-h
Confidence                                        22211   0              0 000    012245678888888887 5


Q ss_pred             CCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       184 ~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .|++++++++|++|..+++++ .|.+.              ++.+++||.||+|+|+++.
T Consensus       430 ~Gv~i~~~t~V~~l~~~~~~v-~V~t~--------------~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          430 QGLQIYYQYQLQNFSRKDDCW-LLNFA--------------GDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             TTCEEEESCCEEEEEEETTEE-EEEET--------------TSCEEEESEEEECCGGGGG
T ss_pred             CCCEEEeCCeeeEEEEeCCeE-EEEEC--------------CCCEEECCEEEECCCcchh
Confidence            799999999999999998874 45542              1257999999999997753

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.46  E-value=6.8e-13  Score=125.27  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=91.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCc-----------ccch------hh-----------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGG-----------QLFS------AM-----------  140 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g-----------~~~~------~~-----------  140 (321)
                      ++||||||||++|+++|++|++. |. +|+|||+....++.....+           ..+.      .+           
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~-G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   84 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARR-GYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFNGWKND   84 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCCCCccCCCCccEEEeccCCchhhhcchhHHHHHHHHHHHhhC
Confidence            68999999999999999999999 99 9999999876654321100           0000      00           


Q ss_pred             ------hc---------cchHHHHHHH-----cCCCcc-------------c------C-C--CeE-----EEecHHHHH
Q 020815          141 ------VV---------RKPAHIFLDE-----LGIDYD-------------E------Q-D--NYV-----VIKHAALFT  173 (321)
Q Consensus       141 ------~~---------~~~~~~~l~~-----~g~~~~-------------~------~-~--~~~-----~~~~~~~~~  173 (321)
                            +.         .....+.+..     .+..+.             .      . .  .++     ...+...+.
T Consensus        85 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~~~~~~~~  164 (438)
T 3dje_A           85 PLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNAL  164 (438)
T ss_dssp             TTTGGGEECCCEEEEECSHHHHHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEEECHHHHH
T ss_pred             ccccCcEeccceEEEecCcchHHHHHHHHhhcccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEEecHHHHH
Confidence                  00         0011111111     122210             0      0 0  111     122456788


Q ss_pred             HHHHHHHHcCCCcEEEcCc---eEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          174 STIMSKLLARPNVKLFNAV---AAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       174 ~~l~~~~~~~~gv~i~~~~---~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..|.+.+. +.|++|++++   +|++|..+++++.+|.+.+              +.+++||.||+|+|+++
T Consensus       165 ~~L~~~a~-~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~--------------G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          165 VAAAREAQ-RMGVKFVTGTPQGRVVTLIFENNDVKGAVTAD--------------GKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHH-HTTCEEEESTTTTCEEEEEEETTEEEEEEETT--------------TEEEECSEEEECCGGGG
T ss_pred             HHHHHHHH-hcCCEEEeCCcCceEEEEEecCCeEEEEEECC--------------CCEEECCEEEECCCCCh
Confidence            88888887 5799999999   9999999999999898843              25899999999999765

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.46  E-value=3.3e-13  Score=131.64  Aligned_cols=142  Identities=23%  Similarity=0.277  Sum_probs=91.2

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc-------hh---hhccc--------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-------SA---MVVRK--------------  144 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~-------~~---~~~~~--------------  144 (321)
                      .+|||||||||++|+++|+.|+++ |++|+|||+++..+|++.....+.       ..   .+...              
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~-G~~V~LlEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~~~e~~~l~~~ap~   95 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVR-GIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENAPH   95 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSTTCSGGGSSCCEECC---------------CHHHHHHHHHHCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCcccCCcCccccchHHHHhcCHHHHHHHHHHHHHHHHhCch
Confidence            469999999999999999999999 999999999976666543222110       00   00000              


Q ss_pred             ---------------hHHHHHHHcCCC----------------------------cccC---CCeE---EEecHHHHHHH
Q 020815          145 ---------------PAHIFLDELGID----------------------------YDEQ---DNYV---VIKHAALFTST  175 (321)
Q Consensus       145 ---------------~~~~~l~~~g~~----------------------------~~~~---~~~~---~~~~~~~~~~~  175 (321)
                                     ....+....+..                            +...   ..+.   ...+...+...
T Consensus        96 l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~dg~vd~~~l~~~  175 (561)
T 3da1_A           96 VTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARLTLE  175 (561)
T ss_dssp             TCEEEEEEEEECC---------------------------CEEECHHHHHHHCTTSCCTTCCEEEEEEEEECCHHHHHHH
T ss_pred             hccccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccCChhhceeEEEecCceEcHHHHHHH
Confidence                           000000000000                            0000   0000   12345677778


Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      |.+.+. +.|++++++++|+++..+++++.+|.+.+.         .+++..+++||.||+|+|.+
T Consensus       176 L~~~a~-~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~---------~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          176 IMKEAV-ARGAVALNYMKVESFIYDQGKVVGVVAKDR---------LTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHH-HTTCEEEESEEEEEEEEETTEEEEEEEEET---------TTCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHH-HcCCEEEcCCEEEEEEEcCCeEEEEEEEEc---------CCCceEEEECCEEEECCCcc
Confidence            888776 579999999999999999999999988541         12244789999999999944

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.46  E-value=5.8e-13  Score=124.22  Aligned_cols=131  Identities=18%  Similarity=0.284  Sum_probs=86.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~--  158 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+...+...  ..+..     ......+.++++|+         ++.  
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~--~~~~~-----l~~~~~~~l~~~g~~~~~~~~~~~~~~~   77 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARRERAI--NGADL-----LKPAGIRVVEAAGLLAEVTRRGGRVRHE   77 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCC-----CCCCE-----ECHHHHHHHHHTTCHHHHHHTTCEEECE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCCCCcc--Cceee-----ECchHHHHHHHcCcHHHHHHhCCCccee
Confidence            58999999999999999999999 9999999998654211  01111     11112222333222         110  


Q ss_pred             ----cC--------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEE-EEEEeecceecccC
Q 020815          159 ----EQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG-GVVTNWALVSMNHD  219 (321)
Q Consensus       159 ----~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~-gv~~~~~~~~~~~~  219 (321)
                          ..              ..+....+...+.+.|.+.+.+..|++++++++|+++..+++.+. .|.+.+        
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~--------  149 (399)
T 2x3n_A           78 LEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLND--------  149 (399)
T ss_dssp             EEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETT--------
T ss_pred             EEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECC--------
Confidence                00              011233456788888888886434999999999999988777653 344421        


Q ss_pred             CCCCCCceEEEcCeEEEcCCCCC
Q 020815          220 TQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       220 ~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                            +.+++||.||+|+|..+
T Consensus       150 ------g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          150 ------GRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             ------SCEEEEEEEEECCCTTC
T ss_pred             ------CCEEECCEEEECCCCCh
Confidence                  24799999999999554

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.45  E-value=8.8e-13  Score=127.92  Aligned_cols=132  Identities=15%  Similarity=0.109  Sum_probs=86.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------CcccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDEQ  160 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~~~  160 (321)
                      ++||+|||||++|+++|+.|++. |++|+||||...++.... +.      .......+.++++|+         ++...
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~-G~~v~viEr~~~~~~~~~-~~------~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   76 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQ-GVRVLVVERRPGLSPYPR-AA------GQNPRTMELLRIGGVADEVVRADDIRGTQ   76 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSSSCCCCCC-SC------CBCHHHHHHHHHTTCHHHHHHSCCSSCTT
T ss_pred             cCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCc-cc------eECHHHHHHHHHcCCHHHHHhhCCCcccc
Confidence            68999999999999999999999 999999999875532111 10      111222233333322         21110


Q ss_pred             ----------------------------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC----
Q 020815          161 ----------------------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG----  202 (321)
Q Consensus       161 ----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~----  202 (321)
                                                        .......+...+...|.+.+.+ .|++++++++|+++..+++    
T Consensus        77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~gv~i~~~~~v~~i~~~~~~~~~  155 (535)
T 3ihg_A           77 GDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARK-HGGAIRFGTRLLSFRQHDDDAGA  155 (535)
T ss_dssp             SCCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHH-TTCEEESSCEEEEEEEECGGGCS
T ss_pred             cceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEECCCCccc
Confidence                                              0001123456777888888874 5999999999999998876    


Q ss_pred             EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+... +.++          + ...+++||+||.|+|.++
T Consensus       156 ~v~v~-~~~~----------~-~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          156 GVTAR-LAGP----------D-GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEEE-EEET----------T-EEEEEEEEEEEECCCTTC
T ss_pred             cEEEE-EEcC----------C-CeEEEEeCEEEECCCCcc
Confidence            55432 2210          0 136899999999999554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.45  E-value=8.5e-13  Score=123.46  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=86.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc-
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD-  158 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~-  158 (321)
                      ..+||+|||||++|+++|+.|++. |++|+|||+...+....  .+     ........+.++++|+         +.. 
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~E~~~~~~~~~--~~-----~~l~~~~~~~l~~lg~~~~~~~~~~~~~~   93 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQS-GIDCDVYEAVKEIKPVG--AA-----ISVWPNGVKCMAHLGMGDIMETFGGPLRR   93 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSCC------CE-----EEECHHHHHHHHHTTCHHHHHHHSCCCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCCCcC--ee-----EEECHHHHHHHHHCCCHHHHHhhcCCCcc
Confidence            368999999999999999999999 99999999987553211  01     1111222333444333         111 


Q ss_pred             -----cC-C----------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec
Q 020815          159 -----EQ-D----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM  216 (321)
Q Consensus       159 -----~~-~----------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~  216 (321)
                           .. +                ......+...+.+.|++.+.+   ++++++++|+++..+++.+. |.+.      
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~~~~~v~-v~~~------  163 (407)
T 3rp8_A           94 MAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR---DSVQFGKRVTRCEEDADGVT-VWFT------  163 (407)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG---GGEEESCCEEEEEEETTEEE-EEET------
T ss_pred             eEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc---CEEEECCEEEEEEecCCcEE-EEEc------
Confidence                 00 0                112233456777888887753   89999999999999888544 3332      


Q ss_pred             ccCCCCCCCceEEEcCeEEEcCCCCCCCc
Q 020815          217 NHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       217 ~~~~~~~g~~~~i~a~~VI~AtG~~~~~~  245 (321)
                              ++.+++||+||.|+|..+.+.
T Consensus       164 --------~g~~~~a~~vV~AdG~~S~vr  184 (407)
T 3rp8_A          164 --------DGSSASGDLLIAADGSHSALR  184 (407)
T ss_dssp             --------TSCEEEESEEEECCCTTCSSH
T ss_pred             --------CCCEEeeCEEEECCCcChHHH
Confidence                    225899999999999776543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.44  E-value=9.9e-13  Score=128.86  Aligned_cols=132  Identities=17%  Similarity=0.235  Sum_probs=90.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~--  158 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+...++...  +..+      .......++.+|+         ...  
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~-G~~V~LiEr~~~~~~~~--G~~l------~p~~~~~l~~lGl~~~l~~~~~~~~~~   93 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERSAFPRYRV--GESL------LPGTMSILNRLGLQEKIDAQNYVKKPS   93 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCSSCCCC--CCBC------CHHHHHHHHHTTCHHHHHHHCCEEECE
T ss_pred             CCCEEEECcCHHHHHHHHHHHcC-CCCEEEEcCCCCCCCce--eeeE------CHHHHHHHHHcCCcHHHHhcCCcccCC
Confidence            68999999999999999999999 99999999986543321  1111      1112223333332         100  


Q ss_pred             ------c-----------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeeccee
Q 020815          159 ------E-----------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (321)
Q Consensus       159 ------~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~  215 (321)
                            .                 ...+....+...+...|.+.+. +.|++++++++|+++..+++.+.+|.+..    
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~-~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~----  168 (591)
T 3i3l_A           94 ATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEAR-SRGITVHEETPVTDVDLSDPDRVVLTVRR----  168 (591)
T ss_dssp             EEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHH-HTTCEEETTCCEEEEECCSTTCEEEEEEE----
T ss_pred             cEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCEEEEEEec----
Confidence                  0                 0012234456778888888887 47999999999999988766677777642    


Q ss_pred             cccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          216 MNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       216 ~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                             +|+..+++||.||+|+|..+
T Consensus       169 -------~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          169 -------GGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             -------TTEEEEEEESEEEECCGGGC
T ss_pred             -------CCceEEEEcCEEEECCCCcc
Confidence                   11236899999999999544

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.43  E-value=1.3e-12  Score=127.44  Aligned_cols=137  Identities=23%  Similarity=0.276  Sum_probs=89.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCC-ccccC-cccchhhhcc------chHHHHHHHcCCCcccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGG-GAWLG-GQLFSAMVVR------KPAHIFLDELGIDYDEQ  160 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg-~~~~~-g~~~~~~~~~------~~~~~~l~~~g~~~~~~  160 (321)
                      +|||||||||++|+.||++|++. |++|+|||++. .+|. +|... +......+..      .....+++..++.|...
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~-G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l  105 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARM-GAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKML  105 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeec
Confidence            58999999999999999999999 99999999974 3332 12110 1110000000      00112233333433211


Q ss_pred             --------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815          161 --------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (321)
Q Consensus       161 --------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~  232 (321)
                              .......+...+...|.+.+.+..|++++ +.+|++|..+++++.+|.+.+              +.+++||
T Consensus       106 ~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~d--------------G~~i~Ad  170 (637)
T 2zxi_A          106 NTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNL--------------GVEYKTK  170 (637)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETT--------------SCEEECS
T ss_pred             ccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECC--------------CcEEEeC
Confidence                    01112334567778888877744799996 569999998889999998743              2689999


Q ss_pred             eEEEcCCCCC
Q 020815          233 VVVSSCGHDG  242 (321)
Q Consensus       233 ~VI~AtG~~~  242 (321)
                      .||+|||++.
T Consensus       171 aVVLATG~~s  180 (637)
T 2zxi_A          171 AVVVTTGTFL  180 (637)
T ss_dssp             EEEECCTTCB
T ss_pred             EEEEccCCCc
Confidence            9999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.43  E-value=7.4e-13  Score=123.38  Aligned_cols=136  Identities=20%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCC-CeEEEEeccCCCCCccccCcccchhhhcc------------------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVR------------------------  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~------------------------  143 (321)
                      ++||+|||||++|+++|++|++ . | .+|+|||++...+|.+.............                        
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~-G~~~V~vlE~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   99 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNH-GITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDLEYD   99 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHH-CCCCEEEECSSSTTCSGGGTSCCCBCCCCSSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhc-CCCcEEEEeCCCCCCCcccccCceeeecCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6899999999999999999999 9 9 99999999875444433222111000000                        


Q ss_pred             --------------c-------hHHHHHHHcCCCcccC---------C----------C--eEE------EecHHHHHHH
Q 020815          144 --------------K-------PAHIFLDELGIDYDEQ---------D----------N--YVV------IKHAALFTST  175 (321)
Q Consensus       144 --------------~-------~~~~~l~~~g~~~~~~---------~----------~--~~~------~~~~~~~~~~  175 (321)
                                    .       ...+++.+.|+++...         .          .  ...      ..+...+.+.
T Consensus       100 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (405)
T 2gag_B          100 FLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWA  179 (405)
T ss_dssp             CCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBCCHHHHHHH
T ss_pred             cCEecccEEEEEcCHHHHHHHHHHHHHHHhcCCCceEeCHHHHHhhCCCCcccccccccceeEEEeCCCccCCHHHHHHH
Confidence                          0       0112223334332110         0          0  000      1234567788


Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      |.+.+. +.|++++++++|+++..+++++.+|.+.+               .+++||.||+|+|+++
T Consensus       180 l~~~~~-~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---------------g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          180 FARKAN-EMGVDIIQNCEVTGFIKDGEKVTGVKTTR---------------GTIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHH-HTTCEEECSCCEEEEEESSSBEEEEEETT---------------CCEEEEEEEECCGGGH
T ss_pred             HHHHHH-HCCCEEEcCCeEEEEEEeCCEEEEEEeCC---------------ceEECCEEEECCchhH
Confidence            888886 57999999999999998888777777632               2689999999999543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.43  E-value=6.6e-13  Score=129.67  Aligned_cols=141  Identities=22%  Similarity=0.222  Sum_probs=90.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC-------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-------------  155 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~-------------  155 (321)
                      .+|||+|||||++|+++|+.|++. |++|+|||+...+..... +      ........+.++++|+             
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~-G~~V~VlEr~~~~~~~~r-~------~~l~~~s~~~l~~lGl~~~l~~~~~~~~~  119 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG-GVGALVLEKLVEPVGHDR-A------GALHIRTVETLDLRGLLDRFLEGTQVAKG  119 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT-TCCEEEEBSCSSCCCSSS-C------CCBCHHHHHHHHTTTCHHHHTTSCCBCSB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCCCCce-E------EEECHHHHHHHHHcCChHHHHhcCcccCC
Confidence            368999999999999999999999 999999999865532111 1      1111222333333332             


Q ss_pred             -----------CcccC---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC
Q 020815          156 -----------DYDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (321)
Q Consensus       156 -----------~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~  221 (321)
                                 .+...   ..+....+...+.+.|.+.+. +.|++|+++++|+++..+++.+. |.+..          
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~-~~gv~i~~~~~v~~l~~~~~~v~-v~~~~----------  187 (570)
T 3fmw_A          120 LPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAR-EAGAEIPRGHEVTRLRQDAEAVE-VTVAG----------  187 (570)
T ss_dssp             CCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHH-HHTEECCBSCEEEECCBCSSCEE-EEEEE----------
T ss_pred             ceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCeEE-EEEEe----------
Confidence                       01100   112233456778888888876 46999999999999988776554 33311          


Q ss_pred             CCCCc-eEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          222 SCMDP-NVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       222 ~~g~~-~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                      .  ++ .+++||+||.|+|..     +.+++...++
T Consensus       188 ~--~G~~~~~a~~vV~ADG~~-----S~vR~~lGi~  216 (570)
T 3fmw_A          188 P--SGPYPVRARYGVGCDGGR-----STVRRLAADR  216 (570)
T ss_dssp             T--TEEEEEEESEEEECSCSS-----CHHHHHTTCC
T ss_pred             C--CCcEEEEeCEEEEcCCCC-----chHHHHcCCC
Confidence            0  22 589999999999954     4555555443

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.42  E-value=1.7e-12  Score=120.27  Aligned_cols=126  Identities=20%  Similarity=0.173  Sum_probs=85.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------ccc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YDE-  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~~-  159 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+...++...  .+.     .......+.++++|+.         ... 
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~--~~~-----~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   82 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQN-GWDVRLHEKSSELRAFG--AGI-----YLWHNGLRVLEGLGALDDVLQGSHTPPTY   82 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSCCCCS--SEE-----EEEHHHHHHHHHTTCHHHHHTTCBCCSCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCCCC--ceE-----EeCccHHHHHHHcCCHHHHHhhCCCccce
Confidence            58999999999999999999999 99999999987664321  111     1112233344444331         100 


Q ss_pred             ----C----------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815          160 ----Q----------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       160 ----~----------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                          .          .......+...+.+.|.+.+.+ .|++++++++|+++.. ++   .|.+.+              
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~-~~---~v~~~~--------------  143 (379)
T 3alj_A           83 ETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARA-LGVDISVNSEAVAADP-VG---RLTLQT--------------  143 (379)
T ss_dssp             EEEETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHH-TTCEEESSCCEEEEET-TT---EEEETT--------------
T ss_pred             EEEeCCceeeeccCCCCceEEECHHHHHHHHHHHHHh-cCCEEEeCCEEEEEEe-CC---EEEECC--------------
Confidence                0          0112334567788888888874 6999999999999976 44   344421              


Q ss_pred             ceEEEcCeEEEcCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~  242 (321)
                      +.+++||+||+|+|..+
T Consensus       144 g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          144 GEVLEADLIVGADGVGS  160 (379)
T ss_dssp             SCEEECSEEEECCCTTC
T ss_pred             CCEEEcCEEEECCCccH
Confidence            25799999999999554

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.41  E-value=5e-13  Score=124.38  Aligned_cols=136  Identities=20%  Similarity=0.157  Sum_probs=86.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC-ccccCcccchhhhccchHHHHHHHcCCCcc----------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GAWLGGQLFSAMVVRKPAHIFLDELGIDYD----------  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg-~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~----------  158 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+...+.+ .....+.      ......+.++++|+.-.          
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g~------l~~~~~~~l~~lg~~~~~~~~~~~~~~   74 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTPDYVLGRIRAGV------LEQGMVDLLREAGVDRRMARDGLVHEG   74 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSCHHHHHTCCCCCE------ECHHHHHHHHHTTCCHHHHHHCEEESC
T ss_pred             CccEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCcccCCCceEe------ECHHHHHHHHHcCCcHHHHhcCCccce
Confidence            58999999999999999999999 999999999763210 0000111      12233344555544210          


Q ss_pred             ----cC-------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEE-eecceecccCC
Q 020815          159 ----EQ-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVT-NWALVSMNHDT  220 (321)
Q Consensus       159 ----~~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~-~~~~~~~~~~~  220 (321)
                          ..             .......+...+.+.|++.+. +.|++++++++|+++..+++....|.+ .+         
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~---------  144 (394)
T 1k0i_A           75 VEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEARE-ACGATTVYQAAEVRLHDLQGERPYVTFERD---------  144 (394)
T ss_dssp             EEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHH-HTTCEEESSCEEEEEECTTSSSCEEEEEET---------
T ss_pred             EEEEECCceEEeccccccCCCceEEechHHHHHHHHHHHH-hcCCeEEeceeEEEEEEecCCceEEEEecC---------
Confidence                00             111122244567778888877 469999999999999875432223443 21         


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCCCc
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~~~  245 (321)
                         |+..+++||+||.|+|..+...
T Consensus       145 ---g~~~~~~a~~vV~AdG~~S~vr  166 (394)
T 1k0i_A          145 ---GERLRLDCDYIAGCDGFHGISR  166 (394)
T ss_dssp             ---TEEEEEECSEEEECCCTTCSTG
T ss_pred             ---CcEEEEEeCEEEECCCCCcHHH
Confidence               1223799999999999877643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.41  E-value=1.2e-12  Score=121.01  Aligned_cols=136  Identities=19%  Similarity=0.180  Sum_probs=86.5

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhc---c-------chHH-------HHH-
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV---R-------KPAH-------IFL-  150 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~---~-------~~~~-------~~l-  150 (321)
                      .++||+|||||++|+++|++|++. |++|+|||+....+|.+...+........   .       ....       +.+ 
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~-G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   94 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELY   94 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999 99999999986555443332222111110   0       0000       000 


Q ss_pred             HHcCCCcc--cC----------------------------------------CC----eE----EEecHHHHHHHHHHHH
Q 020815          151 DELGIDYD--EQ----------------------------------------DN----YV----VIKHAALFTSTIMSKL  180 (321)
Q Consensus       151 ~~~g~~~~--~~----------------------------------------~~----~~----~~~~~~~~~~~l~~~~  180 (321)
                      +..+..+.  ..                                        ..    +.    ...+...+.+.|.+.+
T Consensus        95 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (382)
T 1ryi_A           95 ALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAA  174 (382)
T ss_dssp             HHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHH
T ss_pred             HhhCCCcCeeecceEEEEeCHHHHHHHHHHhhcCCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHHHHHHHH
Confidence            11121110  00                                        00    00    0123466778888888


Q ss_pred             HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      . +.|++++++++|+++..+++++ +|.+..               .+++||.||+|+|.++
T Consensus       175 ~-~~g~~i~~~~~v~~i~~~~~~~-~v~~~~---------------g~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          175 K-MLGAEIFEHTPVLHVERDGEAL-FIKTPS---------------GDVWANHVVVASGVWS  219 (382)
T ss_dssp             H-HTTCEEETTCCCCEEECSSSSE-EEEETT---------------EEEEEEEEEECCGGGT
T ss_pred             H-HCCCEEEcCCcEEEEEEECCEE-EEEcCC---------------ceEEcCEEEECCChhH
Confidence            7 5799999999999998877766 555521               3799999999999654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.41  E-value=1.8e-12  Score=126.89  Aligned_cols=138  Identities=25%  Similarity=0.337  Sum_probs=88.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCC-cccc-Ccccchhhhcc------chHHHHHHHcCCCccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGG-GAWL-GGQLFSAMVVR------KPAHIFLDELGIDYDE  159 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg-~~~~-~g~~~~~~~~~------~~~~~~l~~~g~~~~~  159 (321)
                      .+|||||||||++|++||++|++. |.+|+|||++. .+|. +|.. .+......+..      .....+.+..++.|..
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~  105 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM-GQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRI  105 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC-CCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhh
Confidence            369999999999999999999999 99999999974 2332 1110 00000000000      0011222333333321


Q ss_pred             C--------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          160 Q--------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       160 ~--------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      .        .......+...+...|.+.+.+..|++++ +++|+++..+++++.+|.+.+              +.+++|
T Consensus       106 l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~d--------------G~~I~A  170 (651)
T 3ces_A          106 LNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQM--------------GLKFRA  170 (651)
T ss_dssp             ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETT--------------SEEEEE
T ss_pred             hhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECC--------------CCEEEC
Confidence            1        01112234466777777777644799995 469999998888898888742              268999


Q ss_pred             CeEEEcCCCCC
Q 020815          232 KVVVSSCGHDG  242 (321)
Q Consensus       232 ~~VI~AtG~~~  242 (321)
                      |.||+|||+++
T Consensus       171 d~VVLATGt~s  181 (651)
T 3ces_A          171 KAVVLTVGTFL  181 (651)
T ss_dssp             EEEEECCSTTT
T ss_pred             CEEEEcCCCCc
Confidence            99999999875

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.41  E-value=2e-12  Score=129.20  Aligned_cols=137  Identities=13%  Similarity=0.119  Sum_probs=87.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC-ccccC-cccchh----------hhc--cchHHHHHH----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GAWLG-GQLFSA----------MVV--RKPAHIFLD----  151 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg-~~~~~-g~~~~~----------~~~--~~~~~~~l~----  151 (321)
                      ++||||||||++|+++|++|++. |++|+|||++..+|+ .+... |.+...          ...  .....+.++    
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~  342 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRR-GAVVTLYCADAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLE  342 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSSTTCSGGGCSCEEECCCCCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCcEEEEeCCCccccccccccCCEEecCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence            58999999999999999999999 999999999865553 33222 221100          000  000111121    


Q ss_pred             -----------------------------HcCCCcc---c--------------C-CCeE----EEecHHHHHHHHHHHH
Q 020815          152 -----------------------------ELGIDYD---E--------------Q-DNYV----VIKHAALFTSTIMSKL  180 (321)
Q Consensus       152 -----------------------------~~g~~~~---~--------------~-~~~~----~~~~~~~~~~~l~~~~  180 (321)
                                                   +.|++..   .              . ....    ...+...+...|.+.+
T Consensus       343 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a  422 (689)
T 3pvc_A          343 QGIAFDHQWCGVSQLAFDDKSRGKIEKMLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLTHALMMLA  422 (689)
T ss_dssp             TTCCCCEECCCEEEECCSHHHHHHHHHHTTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHH
T ss_pred             hccccccccCceEEeccCHHHHHHHHHHHhcCCChHHhhccCHHHHHHhcCCCcccceEEecCCeEECHHHHHHHHHHHH
Confidence                                         1222211   0              0 0000    1224567888888888


Q ss_pred             HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCce-EEEcCeEEEcCCCCCC
Q 020815          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSSCGHDGP  243 (321)
Q Consensus       181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~a~~VI~AtG~~~~  243 (321)
                      . +.|++|+++++|++|..+++++ .|.+.+              +. +++||.||+|+|+++.
T Consensus       423 ~-~~Gv~i~~~t~V~~l~~~~~~v-~V~t~~--------------G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          423 Q-QNGMTCHYQHELQRLKRIDSQW-QLTFGQ--------------SQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             H-HTTCEEEESCCEEEEEECSSSE-EEEEC---------------CCCCEEESEEEECCGGGTT
T ss_pred             H-hCCCEEEeCCeEeEEEEeCCeE-EEEeCC--------------CcEEEECCEEEECCCcchh
Confidence            7 5799999999999999887764 454422              13 6899999999998764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.41  E-value=1.1e-12  Score=128.63  Aligned_cols=146  Identities=23%  Similarity=0.288  Sum_probs=93.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCccc-----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-----  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~-----  159 (321)
                      +|||||||||++|+++|+.|++.     +|++|+||||...+|+....++.+....+ . .....+.+.+.++..     
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l-~-~ll~~~~~~g~~~~~~~~~~  112 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAF-E-ELFPDWKEKGAPLNTPVTED  112 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHH-H-HHCTTHHHHTCCCCEECCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHH-H-HHHHHHHhcCCceeeeechh
Confidence            58999999999999999999985     27999999999877765433332211100 0 000011111221110     


Q ss_pred             ---------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecc
Q 020815          160 ---------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMN  217 (321)
Q Consensus       160 ---------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~  217 (321)
                                           ........+...+.+.|.+++. +.|++|+++++|+++..++ +++.+|.+.+..  .+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~-~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g--~~  189 (584)
T 2gmh_A          113 RFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAE-ALGVEVYPGYAAAEILFHEDGSVKGIATNDVG--IQ  189 (584)
T ss_dssp             EEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHH-HTTCEEETTCCEEEEEECTTSSEEEEEECCEE--EC
T ss_pred             heeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHH-HcCCEEEcCCEEEEEEEcCCCCEEEEEeCCcc--cc
Confidence                                 0000123355678888888887 4699999999999999875 578888774200  00


Q ss_pred             cCCCCCCC-------ceEEEcCeEEEcCCCCCCC
Q 020815          218 HDTQSCMD-------PNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       218 ~~~~~~g~-------~~~i~a~~VI~AtG~~~~~  244 (321)
                          .+|+       +.+++||+||+|+|.++.+
T Consensus       190 ----~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          190 ----KDGAPKTTFERGLELHAKVTIFAEGCHGHL  219 (584)
T ss_dssp             ----TTSCEEEEEECCCEEECSEEEECCCTTCHH
T ss_pred             ----CCCCcccccCCceEEECCEEEEeeCCCchH
Confidence                0111       2579999999999977643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.40  E-value=1e-12  Score=122.41  Aligned_cols=134  Identities=20%  Similarity=0.310  Sum_probs=86.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccchh----------------------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFSA----------------------------  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~~----------------------------  139 (321)
                      ++||+|||||++|+++|++|++. |++|+|||+....+  |.++....++..                            
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCERR   82 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhCcc
Confidence            58999999999999999999999 99999999987554  333211111000                            


Q ss_pred             hh--------c--------c--chHHHHHHHcCCCcccC--------------C-Ce-E------EEecHHHHHHHHHHH
Q 020815          140 MV--------V--------R--KPAHIFLDELGIDYDEQ--------------D-NY-V------VIKHAALFTSTIMSK  179 (321)
Q Consensus       140 ~~--------~--------~--~~~~~~l~~~g~~~~~~--------------~-~~-~------~~~~~~~~~~~l~~~  179 (321)
                      ..        .        .  ....+++.+.|+++...              . .. .      -..+...+...|.+.
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  162 (397)
T 2oln_A           83 LIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTL  162 (397)
T ss_dssp             CEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHHHH
T ss_pred             HHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHHHH
Confidence            00        0        0  01123344445432110              0 00 0      022446677888887


Q ss_pred             HHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       180 ~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +. +.|++++++++|++|..+++.+. |.+.               ..+++||.||+|+|++
T Consensus       163 a~-~~Gv~i~~~~~V~~i~~~~~~v~-v~t~---------------~g~i~a~~VV~A~G~~  207 (397)
T 2oln_A          163 AQ-AAGATLRAGETVTELVPDADGVS-VTTD---------------RGTYRAGKVVLACGPY  207 (397)
T ss_dssp             HH-HTTCEEEESCCEEEEEEETTEEE-EEES---------------SCEEEEEEEEECCGGG
T ss_pred             HH-HcCCEEECCCEEEEEEEcCCeEE-EEEC---------------CCEEEcCEEEEcCCcC
Confidence            76 57999999999999998877643 4331               1479999999999954

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.38  E-value=5.3e-12  Score=123.50  Aligned_cols=137  Identities=18%  Similarity=0.264  Sum_probs=90.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCCc-ccc-Ccccchhhhcc------chHHHHHHHcCCCcccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGG-AWL-GGQLFSAMVVR------KPAHIFLDELGIDYDEQ  160 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg~-~~~-~g~~~~~~~~~------~~~~~~l~~~g~~~~~~  160 (321)
                      +|||||||||++|++||++|++. |.+|+|||+.. .+|+. |.. .+......+.+      .....+++..++.|...
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l   99 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARG-GLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML   99 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHHC-CCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence            69999999999999999999999 99999999974 34432 111 01110000000      01122334444444321


Q ss_pred             -----C---CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815          161 -----D---NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (321)
Q Consensus       161 -----~---~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~  232 (321)
                           .   ......+...+...+.+.+.+.+|++++.. .|+++..++++|.||.+.+              +.+++||
T Consensus       100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~--------------G~~i~Ad  164 (641)
T 3cp8_A          100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRS--------------GRAIQAK  164 (641)
T ss_dssp             CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETT--------------SCEEEEE
T ss_pred             ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECC--------------CcEEEeC
Confidence                 0   111234556777888777775479999765 8999999999999888742              2589999


Q ss_pred             eEEEcCCCCC
Q 020815          233 VVVSSCGHDG  242 (321)
Q Consensus       233 ~VI~AtG~~~  242 (321)
                      .||+|||++.
T Consensus       165 ~VVLATG~~s  174 (641)
T 3cp8_A          165 AAILACGTFL  174 (641)
T ss_dssp             EEEECCTTCB
T ss_pred             EEEECcCCCC
Confidence            9999999873

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.37  E-value=6.4e-12  Score=122.30  Aligned_cols=141  Identities=14%  Similarity=0.177  Sum_probs=88.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcC---------CCccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG---------IDYDE  159 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g---------~~~~~  159 (321)
                      .++||+|||||++|+++|+.|++. |++|+||||...++.... +..+      .....+.++++|         .++..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~-G~~V~vlEr~~~~~~~~~-~~~l------~~~~~~~l~~lGl~~~~~~~~~~~~~   96 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDGTITHPR-VGTI------GPRSMELFRRWGVAKQIRTAGWPGDH   96 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSCCSSCC-CCEE------CHHHHHHHHHTTCHHHHHTSSCCTTS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCc-eeee------CHHHHHHHHHcCChHHHHhhcCCccc
Confidence            468999999999999999999999 999999999876543211 1111      111222222222         11100


Q ss_pred             -------------------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEE
Q 020815          160 -------------------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV  208 (321)
Q Consensus       160 -------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~  208 (321)
                                                     ........+...+.+.|.+.+.+ .   ++++++|+++..+++.+. +.
T Consensus        97 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~---v~~~~~v~~~~~~~~~v~-v~  171 (549)
T 2r0c_A           97 PLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGE-R---LRTRSRLDSFEQRDDHVR-AT  171 (549)
T ss_dssp             BCCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGG-G---EECSEEEEEEEECSSCEE-EE
T ss_pred             ccceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHH-h---cccCcEEEEEEEeCCEEE-EE
Confidence                                           00011233455677777777763 3   999999999998877655 33


Q ss_pred             EeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815          209 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG  256 (321)
Q Consensus       209 ~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g  256 (321)
                      +.+      .   .+|+..+++||+||.|+|++     +.+|+..+++
T Consensus       172 ~~~------~---~~G~~~~i~a~~vVgADG~~-----S~vR~~lg~~  205 (549)
T 2r0c_A          172 ITD------L---RTGATRAVHARYLVACDGAS-----SPTRKALGID  205 (549)
T ss_dssp             EEE------T---TTCCEEEEEEEEEEECCCTT-----CHHHHHHTCC
T ss_pred             EEE------C---CCCCEEEEEeCEEEECCCCC-----cHHHHHcCCC
Confidence            321      0   11233689999999999954     4455555443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.37  E-value=9.2e-12  Score=116.82  Aligned_cols=39  Identities=36%  Similarity=0.502  Sum_probs=36.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +||+|||||++|++||++|++. |.+|+|||+++.+||.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~GG~~   39 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKA-GHEVEVFERLPITGGRF   39 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCceEEEeCCCCCCCce
Confidence            4899999999999999999999 99999999998888765

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.36  E-value=4.1e-12  Score=118.57  Aligned_cols=138  Identities=17%  Similarity=0.205  Sum_probs=83.2

Q ss_pred             cccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------
Q 020815           85 MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------  155 (321)
Q Consensus        85 ~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------  155 (321)
                      |..+.++||+|||||++|+++|+.|++. |++|+|||+.+.++... .++.+.   +......+.++++|+         
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~-~g~~~~---~~~~~~~~~l~~~gl~~~~~~~~~   95 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQN-GIDVSVYERDNDREARI-FGGTLD---LHKGSGQEAMKKAGLLQTYYDLAL   95 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSSTTCCC-CSCCEE---CCTTTHHHHHHHTTCHHHHHHHCB
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCccccc-cCCeee---eCCccHHHHHHhcChHHHHHHhhc
Confidence            3333468999999999999999999999 99999999986543211 111110   000011222333222         


Q ss_pred             Cc-----ccCC-------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815          156 DY-----DEQD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (321)
Q Consensus       156 ~~-----~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~  217 (321)
                      +.     +..+             ......+...+.+.|.+.+.   +++++++++|+++..+++.+. |.+.       
T Consensus        96 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~-------  164 (398)
T 2xdo_A           96 PMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLE---NDTVIWDRKLVMLEPGKKKWT-LTFE-------  164 (398)
T ss_dssp             CCCEEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC---TTSEEESCCEEEEEECSSSEE-EEET-------
T ss_pred             ccceEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcC---CCEEEECCEEEEEEECCCEEE-EEEC-------
Confidence            10     0000             00112344566666666542   378999999999988776443 3332       


Q ss_pred             cCCCCCCCceEEEcCeEEEcCCCCCCCc
Q 020815          218 HDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       218 ~~~~~~g~~~~i~a~~VI~AtG~~~~~~  245 (321)
                             ++.+++||+||+|+|..+...
T Consensus       165 -------~g~~~~ad~vV~AdG~~S~vR  185 (398)
T 2xdo_A          165 -------NKPSETADLVILANGGMSKVR  185 (398)
T ss_dssp             -------TSCCEEESEEEECSCTTCSCC
T ss_pred             -------CCcEEecCEEEECCCcchhHH
Confidence                   124689999999999877543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.36  E-value=1.3e-11  Score=115.16  Aligned_cols=128  Identities=20%  Similarity=0.270  Sum_probs=85.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCc------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY------------  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~------------  157 (321)
                      .+||+|||||++|+++|+.|++. |++|+|+|+.+.+...  .+..    ........+.++++|+..            
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~~~g----~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   77 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQPLSG--FGTG----IVVQPELVHYLLEQGVELDSISVPSSSMEY   77 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCCC--CSCE----EECCHHHHHHHHHTTCCGGGTCBCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCCCc--cccc----cccChhHHHHHHHcCCccccccccccceEE
Confidence            58999999999999999999999 9999999998653111  0111    112334556777776532            


Q ss_pred             -cc-CCCeEE-------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceE
Q 020815          158 -DE-QDNYVV-------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (321)
Q Consensus       158 -~~-~~~~~~-------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (321)
                       +. .+....       ..+...+.+.|.+.+   .+++++++++|+++..+++.+. |.+.              ++.+
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~~  139 (397)
T 2vou_A           78 VDALTGERVGSVPADWRFTSYDSIYGGLYELF---GPERYHTSKCLVGLSQDSETVQ-MRFS--------------DGTK  139 (397)
T ss_dssp             EETTTCCEEEEEECCCCEEEHHHHHHHHHHHH---CSTTEETTCCEEEEEECSSCEE-EEET--------------TSCE
T ss_pred             EecCCCCccccccCcccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCEEE-EEEC--------------CCCE
Confidence             00 111000       122345666665554   4899999999999988776543 3332              1257


Q ss_pred             EEcCeEEEcCCCCC
Q 020815          229 MEAKVVVSSCGHDG  242 (321)
Q Consensus       229 i~a~~VI~AtG~~~  242 (321)
                      ++||+||+|+|..+
T Consensus       140 ~~ad~vV~AdG~~S  153 (397)
T 2vou_A          140 AEANWVIGADGGAS  153 (397)
T ss_dssp             EEESEEEECCCTTC
T ss_pred             EECCEEEECCCcch
Confidence            99999999999554

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.36  E-value=2.1e-12  Score=124.13  Aligned_cols=135  Identities=19%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-----cccCCCe
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-----YDEQDNY  163 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-----~~~~~~~  163 (321)
                      ..+||+|||||++|+++|+.|++. |++|+|||+.+.+|+....        .......+.+..+|+.     |... .+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liEk~~~~g~~~~~--------~~~~~~~~~l~~~g~~~~~~~~~~~-~~  160 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALL-GARVVLVEKRIKFSRHNVL--------HLWPFTIHDLRALGAKKFYGRFCTG-TL  160 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCSSCCCCCEE--------ECCHHHHHHHHTTTHHHHCTTTTCT-TC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCeEEEEEeccccCCCCcc--------cCChhHHHHHHHcCCcccccccccc-cc
Confidence            468999999999999999999999 9999999998776542110        0112233445555441     2111 11


Q ss_pred             EEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          164 VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      . ..+...+...|.+.+. +.|++++++++|+++..+  ++....|.+..      .   .+|+..+++||+||+|+|+.
T Consensus       161 ~-~~~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~------~---~~g~~~~i~ad~VV~A~G~~  229 (497)
T 2bry_A          161 D-HISIRQLQLLLLKVAL-LLGVEIHWGVKFTGLQPPPRKGSGWRAQLQP------N---PPAQLASYEFDVLISAAGGK  229 (497)
T ss_dssp             C-EEEHHHHHHHHHHHHH-HTTCEEEESCEEEEEECCCSTTCCBEEEEES------C---CCHHHHTCCBSEEEECCCTT
T ss_pred             c-cCCHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEecCCCCEEEEEEEE------C---CCCCEEEEEcCEEEECCCCC
Confidence            1 2345677788888776 479999999999999864  23344454421      0   01122468999999999988


Q ss_pred             CCC
Q 020815          242 GPF  244 (321)
Q Consensus       242 ~~~  244 (321)
                      +..
T Consensus       230 S~~  232 (497)
T 2bry_A          230 FVP  232 (497)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            754

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.36  E-value=7.8e-12  Score=115.76  Aligned_cols=134  Identities=18%  Similarity=0.229  Sum_probs=86.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccchh----------hhc---------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFSA----------MVV---------------  142 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~~----------~~~---------------  142 (321)
                      ++||+|||||++|+++|++|++. |.+|+|||+....+  |.++....+...          +..               
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~-G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~   81 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999 99999999986554  443221111100          000               


Q ss_pred             ---------------c----chHHHHHHHcCCCcccC--------------CCe--E------EEecHHHHHHHHHHHHH
Q 020815          143 ---------------R----KPAHIFLDELGIDYDEQ--------------DNY--V------VIKHAALFTSTIMSKLL  181 (321)
Q Consensus       143 ---------------~----~~~~~~l~~~g~~~~~~--------------~~~--~------~~~~~~~~~~~l~~~~~  181 (321)
                                     .    ....+++...|+++...              ...  .      ...+...+...|.+.+.
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (389)
T 2gf3_A           82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (389)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             cceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHH
Confidence                           0    00112233334432110              000  0      12245678888888886


Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                       +.|++++++++|+++..+++.+ .|.+.               ..+++||.||+|+|.+
T Consensus       162 -~~Gv~i~~~~~v~~i~~~~~~~-~v~~~---------------~g~~~a~~vV~A~G~~  204 (389)
T 2gf3_A          162 -ARGAKVLTHTRVEDFDISPDSV-KIETA---------------NGSYTADKLIVSMGAW  204 (389)
T ss_dssp             -HTTCEEECSCCEEEEEECSSCE-EEEET---------------TEEEEEEEEEECCGGG
T ss_pred             -HCCCEEEcCcEEEEEEecCCeE-EEEeC---------------CCEEEeCEEEEecCcc
Confidence             5699999999999998876643 24332               1479999999999954

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.36  E-value=9.9e-12  Score=119.61  Aligned_cols=140  Identities=14%  Similarity=0.129  Sum_probs=88.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc------hhh----hccc---------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF------SAM----VVRK---------------  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~------~~~----~~~~---------------  144 (321)
                      ++||+|||||++|+++|+.|+++ |++|+|||+....+|++.....+.      ...    +...               
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~-G~~V~llE~~~~~~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~~l   81 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGR-GLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHI   81 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCCEEEEECCCCCCCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCCcc
Confidence            58999999999999999999999 999999999875555443322111      000    0000               


Q ss_pred             -----------------h----HHHHHHHcC-CCc-c----------c--CCC----eE---EEecHHHHHHHHHHHHHc
Q 020815          145 -----------------P----AHIFLDELG-IDY-D----------E--QDN----YV---VIKHAALFTSTIMSKLLA  182 (321)
Q Consensus       145 -----------------~----~~~~l~~~g-~~~-~----------~--~~~----~~---~~~~~~~~~~~l~~~~~~  182 (321)
                                       .    ....++.++ ..+ +          .  ...    +.   ...+...+...|.+.+. 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l~~~a~-  160 (501)
T 2qcu_A           82 AFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV-  160 (501)
T ss_dssp             EEEEEEEEECCTTTSCHHHHHHHHHHHHSSSCCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHH-
T ss_pred             ccccCeEeccCcccchHHHHHHHHHHHHhcCCcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHHHHHHH-
Confidence                             0    001111111 100 0          0  000    00   12356778888888887 


Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +.|++++++++|+++..++ ++.+|.+.+.         .+|+..+++||.||+|+|.+
T Consensus       161 ~~Gv~i~~~~~V~~l~~~~-~~~~V~~~d~---------~~G~~~~i~A~~VV~AtG~~  209 (501)
T 2qcu_A          161 RKGGEVLTRTRATSARREN-GLWIVEAEDI---------DTGKKYSWQARGLVNATGPW  209 (501)
T ss_dssp             HTTCEEECSEEEEEEEEET-TEEEEEEEET---------TTCCEEEEEESCEEECCGGG
T ss_pred             HcCCEEEcCcEEEEEEEeC-CEEEEEEEEC---------CCCCEEEEECCEEEECCChh
Confidence            5799999999999999876 5667766320         01233589999999999954

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.35  E-value=3.6e-12  Score=122.11  Aligned_cols=46  Identities=30%  Similarity=0.427  Sum_probs=40.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF  137 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~  137 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+ ..+||.|...++++
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk-~~~GG~~~~~gcip   71 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEE-YRIGGTCVIRGCVP   71 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHT-TCCEEEEES-SCTTHHHHHHSHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-cCEEEEEeC-CCCCCceeccCccc
Confidence            69999999999999999999999 999999999 57888876655543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.35  E-value=1.2e-11  Score=115.89  Aligned_cols=134  Identities=20%  Similarity=0.265  Sum_probs=84.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD-  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~-  158 (321)
                      ++||+|||||++|+++|+.|++. |++ |+|||+...++...  .+.     .......+.|+++|+         +.. 
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~g--~g~-----~l~~~~~~~l~~lg~~~~l~~~~~~~~~   75 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSEIRPLG--VGI-----NIQPAAVEALAELGLGPALAATAIPTHE   75 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSSCCCCS--CEE-----EECHHHHHHHHHTTCHHHHHHHSEEECE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCCcccce--eEE-----EEChHHHHHHHHCCChHHHHhhCCCcce
Confidence            58999999999999999999999 999 99999987654311  111     111222233333332         110 


Q ss_pred             -----cCCC---------------eEEEecHHHHHHHHHHHHHcCCC-cEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815          159 -----EQDN---------------YVVIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (321)
Q Consensus       159 -----~~~~---------------~~~~~~~~~~~~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~  217 (321)
                           ..+.               .....+...+.+.|++.+.+..| ++++++++|+++.. ++.+. +.+.+      
T Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~-v~~~~------  147 (410)
T 3c96_A           76 LRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRV-LIGAR------  147 (410)
T ss_dssp             EEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEE-EEEEE------
T ss_pred             EEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccE-EEEec------
Confidence                 0000               01234556788888888764334 68999999999987 44343 33321      


Q ss_pred             cCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          218 HDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       218 ~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .   .+|+..+++||+||.|+|..+
T Consensus       148 ~---~~g~~~~~~ad~vV~AdG~~S  169 (410)
T 3c96_A          148 D---GHGKPQALGADVLVGADGIHS  169 (410)
T ss_dssp             E---TTSCEEEEEESEEEECCCTTC
T ss_pred             C---CCCCceEEecCEEEECCCccc
Confidence            0   012336799999999999554

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.35  E-value=3.5e-12  Score=122.16  Aligned_cols=49  Identities=35%  Similarity=0.497  Sum_probs=40.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC---------CCCCccccCcccch
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV---------SPGGGAWLGGQLFS  138 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~---------~~gg~~~~~g~~~~  138 (321)
                      .+|||+|||||++|+++|+.|++. |++|+|||+..         ..||.|.+.+|++.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPs   65 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLN-GARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPK   65 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCEEEEEEeccccccccccCCcCCeecccCchhh
Confidence            369999999999999999999999 99999999421         36888876666543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.35  E-value=1.1e-12  Score=119.63  Aligned_cols=130  Identities=21%  Similarity=0.274  Sum_probs=84.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+.+.+||.+...  .....+.....  ...-.+.++...  ...+...
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~~gg~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~   75 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEASPGGAWQHA--WHSLHLFSPAG--WSSIPGWPMPAS--QGPYPAR   75 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHS-SCCEEEECCSSSSSGGGGGS--CTTCBCSSCGG--GSCCSSSCCCCC--SSSSCBH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccCC--CCCcEecCchh--hhhCCCCCCCCC--ccCCCCH
Confidence            48999999999999999999999 99999999998887764321  00000000000  000011111111  0111234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++++++|+++..+++.+.+|.+.              + .++++|+||+|+|..+
T Consensus        76 ~~~~~~l~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~v~~~--------------~-g~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           76 AEVLAYLAQYEQ-KYALPVLRPIRVQRVSHFGERLRVVARD--------------G-RQWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHH-HTTCCEECSCCEEEEEEETTEEEEEETT--------------S-CEEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHH-HcCCEEEcCCEEEEEEECCCcEEEEEeC--------------C-CEEEeCEEEECCCCCC
Confidence            566666666555 6799999999999999888765434432              1 3799999999999654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.34  E-value=1.3e-11  Score=122.30  Aligned_cols=147  Identities=20%  Similarity=0.256  Sum_probs=90.0

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------  156 (321)
                      ++||+|||||++|+++|+.|++ . |++|+||||...+..... +..      ......+.++++|+.            
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~-G~~V~viEr~~~~~~~g~-a~~------l~~~t~e~l~~lGl~~~~~~~~~~~~~  103 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFP-DIRTCIVEQKEGPMELGQ-ADG------IACRTMEMFEAFEFADSILKEACWIND  103 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCT-TSCEEEECSSSSCCSSCS-CCE------ECHHHHHHHHHTTCHHHHHHHSEEECE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhC-CCCEEEEeCCCCCCCCCc-eee------eCHHHHHHHHHcCcHHHHHHhcccccc
Confidence            5899999999999999999999 9 999999999875532211 111      111222333333321            


Q ss_pred             ---ccc---------------------CCCeEEEecHHHHHHHHHHHHHcCC-CcEEEcCceEEEEEEECC---EEEEEE
Q 020815          157 ---YDE---------------------QDNYVVIKHAALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGG---RVGGVV  208 (321)
Q Consensus       157 ---~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~---~v~gv~  208 (321)
                         +..                     ........+...+.+.|.+.+.+.. +++++++++|+++..+++   ..+.|.
T Consensus       104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~  183 (639)
T 2dkh_A          104 VTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVT  183 (639)
T ss_dssp             EEEEEECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEE
T ss_pred             eEEECCCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEE
Confidence               000                     0011234456778888888887433 349999999999988752   223343


Q ss_pred             EeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhc
Q 020815          209 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI  255 (321)
Q Consensus       209 ~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~  255 (321)
                      +.+    .+  ...+|+..+++||+||.|+|+++     .+|+...+
T Consensus       184 ~~~----~~--~~~~G~~~~i~a~~vVgADG~~S-----~vR~~lg~  219 (639)
T 2dkh_A          184 LER----CD--AAHAGQIETVQARYVVGCDGARS-----NVRRAIGR  219 (639)
T ss_dssp             EEE----CS--GGGTTCEEEEEEEEEEECCCTTC-----HHHHHTTC
T ss_pred             EEe----cc--ccCCCCeEEEEeCEEEECCCcch-----HHHHHhCC
Confidence            321    00  00012346899999999999554     45554443

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.33  E-value=6.2e-12  Score=112.96  Aligned_cols=113  Identities=20%  Similarity=0.278  Sum_probs=71.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      ++|||+|||||+||++||++|++. |++|+|||++ .+||.....  .                .++..  .+.    ..
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~-g~~v~lie~~-~~gg~~~~~--~----------------~~~~~--~~~----~~   58 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRA-RKQIALFDNN-TNRNRVTQN--S----------------HGFIT--RDG----IK   58 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECS-CCGGGGSSC--B----------------CCSTT--CTT----BC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCC-CCCCeeeee--c----------------CCccC--CCC----CC
Confidence            369999999999999999999999 9999999997 344432110  0                01100  000    12


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..++....++++.+..++.++.. .+..+...+....-+.+.              ++.++++|.||+|||...
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~--------------~g~~~~a~~liiATGs~p  117 (304)
T 4fk1_A           59 PEEFKEIGLNEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTK--------------DHTKYLAERVLLATGMQE  117 (304)
T ss_dssp             HHHHHHHHHHHHTTSTTEEEEEC-CEEEEEECTTSCEEEEET--------------TCCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEee-EEEEeeecCCCcEEEEEC--------------CCCEEEeCEEEEccCCcc
Confidence            34556666666765556666665 455554443322333332              236899999999999643

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.32  E-value=9.9e-12  Score=126.64  Aligned_cols=136  Identities=24%  Similarity=0.330  Sum_probs=92.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCC--CCccccC-cccch-------------------hhh-----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSP--GGGAWLG-GQLFS-------------------AMV-----  141 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~--gg~~~~~-g~~~~-------------------~~~-----  141 (321)
                      ++||||||||++|+++|++|++. |. +|+|||++...  +|+++.. |.+..                   .+.     
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~-G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   82 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTR-GWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVS   82 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEETTEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            58999999999999999999999 98 99999998753  4443332 22110                   000     


Q ss_pred             -----------ccc-------hHHHHHHHcCCCcccC------------------CCeE----EEecHHHHHHHHHHHHH
Q 020815          142 -----------VRK-------PAHIFLDELGIDYDEQ------------------DNYV----VIKHAALFTSTIMSKLL  181 (321)
Q Consensus       142 -----------~~~-------~~~~~l~~~g~~~~~~------------------~~~~----~~~~~~~~~~~l~~~~~  181 (321)
                                 ...       ...+++..+|+++...                  ..++    ...+...+...|.+.+.
T Consensus        83 ~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~L~~~a~  162 (830)
T 1pj5_A           83 CFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTE  162 (830)
T ss_dssp             SEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHH
T ss_pred             CeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHHHHHHHH
Confidence                       000       0112334445432210                  0000    12356778888888887


Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       +.|++++++++|++|..+++++.+|.+..               .+++||.||+|+|.++
T Consensus       163 -~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~---------------G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          163 -SAGVTYRGSTTVTGIEQSGGRVTGVQTAD---------------GVIPADIVVSCAGFWG  207 (830)
T ss_dssp             -HTTCEEECSCCEEEEEEETTEEEEEEETT---------------EEEECSEEEECCGGGH
T ss_pred             -HcCCEEECCceEEEEEEeCCEEEEEEECC---------------cEEECCEEEECCccch
Confidence             57999999999999999888888887632               4799999999999653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.32  E-value=3.9e-11  Score=117.19  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=90.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCccc------chhh-----------------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL------FSAM-----------------------  140 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~------~~~~-----------------------  140 (321)
                      ++||+|||||++|+++|+.|+++ |++|+|||++...+|++.....+      +...                       
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~r-G~~V~LlE~~~~~~GtS~~s~gli~~g~ryl~~~~~~l~~~~~~e~~~l~~~~~~~  110 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAAS-GIKTGLIEMQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAPHI  110 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTCSGGGSSCSEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcccccccccccccchhhccChHHHHHHHHHHHHHHHhCccc
Confidence            68999999999999999999999 99999999987665554322111      0000                       


Q ss_pred             ----------hc------c-c-------hHHHHHHH---cCCCcc--------------cCCCe----EE---EecHHHH
Q 020815          141 ----------VV------R-K-------PAHIFLDE---LGIDYD--------------EQDNY----VV---IKHAALF  172 (321)
Q Consensus       141 ----------~~------~-~-------~~~~~l~~---~g~~~~--------------~~~~~----~~---~~~~~~~  172 (321)
                                ..      . .       ...+++..   .+....              ..+.+    ..   ..+...+
T Consensus       111 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~e~~~~~P~l~~~~~~gg~~~~dg~v~~~~l  190 (571)
T 2rgh_A          111 PKPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFLKKEGLKGAGVYLDFRNNDARL  190 (571)
T ss_dssp             SEECCEEEEEESSSSSCSCCHHHHHHHHHHHHHHHTCSSSTTCCEEECHHHHHHHCTTSCCTTEEEEEEECCEECCHHHH
T ss_pred             ccccCceEEeecccccccccHHHHHHHHHHHHHHhhhhccCCCcEEECHHHHHHhCcCCchhhceEEEEecCCeEchHHH
Confidence                      00      0 0       00011111   111110              00001    00   1234567


Q ss_pred             HHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          173 TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       173 ~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ...+.+.+. +.|++++++++|+++..+++++.+|.+.+.         .+++..+++||.||+|+|.+
T Consensus       191 ~~~l~~~a~-~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~---------~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          191 VIDNIKKAA-EDGAYLVSKMKAVGFLYEGDQIVGVKARDL---------LTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHH-HTTCEEESSEEEEEEEEETTEEEEEEEEET---------TTCCEEEEEBSCEEECCGGG
T ss_pred             HHHHHHHHH-HcCCeEEeccEEEEEEEeCCEEEEEEEEEc---------CCCCEEEEEcCEEEECCChh
Confidence            777777776 679999999999999999988888887431         01233579999999999954

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.32  E-value=6.9e-12  Score=115.49  Aligned_cols=135  Identities=14%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc--ccCcccchh----------hhc---------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA--WLGGQLFSA----------MVV---------------  142 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~--~~~g~~~~~----------~~~---------------  142 (321)
                      ++||+|||||++|+++|++|++. |++|+|||+....++..  +....+...          +..               
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~-G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~   80 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELSRHNED   80 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT-TCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999 99999999986553211  111100000          000               


Q ss_pred             ---------------c----chHHHHHHHcCCCccc---------------CCCe---E----EEecHHHHHHHHHHHHH
Q 020815          143 ---------------R----KPAHIFLDELGIDYDE---------------QDNY---V----VIKHAALFTSTIMSKLL  181 (321)
Q Consensus       143 ---------------~----~~~~~~l~~~g~~~~~---------------~~~~---~----~~~~~~~~~~~l~~~~~  181 (321)
                                     .    ....+.++.+|+++..               ...+   +    ...+...+...|.+.+.
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  160 (372)
T 2uzz_A           81 DPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK  160 (372)
T ss_dssp             SCSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHHH
T ss_pred             ccceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHHHHHHH
Confidence                           0    0011222333432210               0000   0    12235677888888876


Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       +.|++++++++|+++..+++.+ .|.+..               .+++||.||+|+|.++
T Consensus       161 -~~G~~i~~~~~V~~i~~~~~~~-~v~~~~---------------g~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          161 -EAGCAQLFNCPVTAIRHDDDGV-TIETAD---------------GEYQAKKAIVCAGTWV  204 (372)
T ss_dssp             -HTTCEEECSCCEEEEEECSSSE-EEEESS---------------CEEEEEEEEECCGGGG
T ss_pred             -HCCCEEEcCCEEEEEEEcCCEE-EEEECC---------------CeEEcCEEEEcCCccH
Confidence             5799999999999998876653 344421               3599999999999664

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.32  E-value=1.2e-11  Score=116.18  Aligned_cols=116  Identities=19%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhh
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR  251 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~  251 (321)
                      +...+.+.+. +.|++++.++.|+++..+++++.+|.+.+              +.++.||.||+|+|.....     ..
T Consensus       196 ~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~~v~l~d--------------G~~i~aD~Vv~a~G~~p~~-----~l  255 (415)
T 3lxd_A          196 LSEFYQAEHR-AHGVDLRTGAAMDCIEGDGTKVTGVRMQD--------------GSVIPADIVIVGIGIVPCV-----GA  255 (415)
T ss_dssp             HHHHHHHHHH-HTTCEEEETCCEEEEEESSSBEEEEEESS--------------SCEEECSEEEECSCCEESC-----HH
T ss_pred             HHHHHHHHHH-hCCCEEEECCEEEEEEecCCcEEEEEeCC--------------CCEEEcCEEEECCCCccCh-----HH
Confidence            3344444444 67999999999999988788888888743              2689999999999955432     22


Q ss_pred             hhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcC----CCCCCCcceeeeeeecchhc
Q 020815          252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID----GAPRMGPTFGAMMISGQKAA  318 (321)
Q Consensus       252 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~----g~~~~~~~~~~~~~~~~~~~  318 (321)
                      +...+...    ..++.++.       +.+...|++|++|+++....    |.+..-+++......|..||
T Consensus       256 ~~~~gl~~----~~gi~vd~-------~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa  315 (415)
T 3lxd_A          256 LISAGASG----GNGVDVDE-------FCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAA  315 (415)
T ss_dssp             HHHTTCCC----SSSEECCT-------TCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHH
T ss_pred             HHhCCCCc----CCCEEECC-------CCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHH
Confidence            33333311    12233332       22345799999999876544    43333334444444444443

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.31  E-value=1.3e-11  Score=118.28  Aligned_cols=57  Identities=7%  Similarity=0.042  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+.+.|.+.+. +.|++|+++++|++|..+++++++|++.+              ++++.||.||.+++..
T Consensus       221 ~~l~~aL~~~~~-~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~--------------g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          221 GALVQGMIKLFQ-DLGGEVVLNARVSHMETTGNKIEAVHLED--------------GRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT--------------SCEEECSCEEECCC--
T ss_pred             cchHHHHHHHHH-HhCCceeeecceeEEEeeCCeEEEEEecC--------------CcEEEcCEEEECCCHH
Confidence            345566666665 67999999999999999999999999853              3789999999988743

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.31  E-value=2e-11  Score=118.51  Aligned_cols=131  Identities=18%  Similarity=0.183  Sum_probs=85.2

Q ss_pred             cccEEEECCChHHHHHHHHhh-cCCCCeEEEEeccCCCCCccccC---cc---cchhhhccchHHHHHHHcCCCcccCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELS-KNPNIQIAIIEQSVSPGGGAWLG---GQ---LFSAMVVRKPAHIFLDELGIDYDEQDN  162 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La-~~~G~~V~liEk~~~~gg~~~~~---g~---~~~~~~~~~~~~~~l~~~g~~~~~~~~  162 (321)
                      ++||+|||||++|+++|+.|+ +. |++|+|||+++.+||.+...   ++   ............+....++..    ..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~-G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~----~~   82 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHEL-GLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWK----TT   82 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT-CCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCS----BS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCc----cc
Confidence            589999999999999999999 87 99999999998888765322   11   111111111001111222221    11


Q ss_pred             eEEEecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          163 YVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                         .....++...+.+.+. +.++  +++++++|+++..+++ ....|.+.              ++.++++|+||+|+|
T Consensus        83 ---~~~~~ei~~~l~~~~~-~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~--------------~G~~i~ad~lV~AtG  144 (540)
T 3gwf_A           83 ---YITQPEILEYLEDVVD-RFDLRRHFKFGTEVTSALYLDDENLWEVTTD--------------HGEVYRAKYVVNAVG  144 (540)
T ss_dssp             ---EEEHHHHHHHHHHHHH-HTTCGGGEEESCCEEEEEEETTTTEEEEEET--------------TSCEEEEEEEEECCC
T ss_pred             ---CCCHHHHHHHHHHHHH-HcCCcceeEeccEEEEEEEeCCCCEEEEEEc--------------CCCEEEeCEEEECCc
Confidence               2344566666655554 5677  8999999999988765 23334442              125799999999999


Q ss_pred             CCCC
Q 020815          240 HDGP  243 (321)
Q Consensus       240 ~~~~  243 (321)
                      ..+.
T Consensus       145 ~~s~  148 (540)
T 3gwf_A          145 LLSA  148 (540)
T ss_dssp             SCCS
T ss_pred             cccc
Confidence            7653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.31  E-value=5.8e-12  Score=113.38  Aligned_cols=110  Identities=19%  Similarity=0.259  Sum_probs=72.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      +|||+|||||+||++||++|++. |++|+|||+. .+||.|...++++...             +.+         ....
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~-g~~V~liE~~-~~gG~~~~~~~i~~~p-------------~~~---------~~~~   61 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRA-NLKTVMIERG-IPGGQMANTEEVENFP-------------GFE---------MITG   61 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTGGGGGCSCBCCST-------------TCS---------SBCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCCeeecccccCCcC-------------Ccc---------ccch
Confidence            79999999999999999999999 9999999996 6888877655543210             000         0123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .++......... +.+..+..+..+.........+  +..               +..++++|.+|+|||..
T Consensus        62 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~d~liiAtGs~  115 (312)
T 4gcm_A           62 PDLSTKMFEHAK-KFGAVYQYGDIKSVEDKGEYKV--INF---------------GNKELTAKAVIIATGAE  115 (312)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEECCCCEEEECSSCEE--EEC---------------SSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHh-hccccccceeeeeeeeeeccee--ecc---------------CCeEEEeceeEEcccCc
Confidence            445555455554 4566666665544443333221  111               23689999999999964

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.30  E-value=1.1e-11  Score=118.03  Aligned_cols=46  Identities=28%  Similarity=0.419  Sum_probs=40.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF  137 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~  137 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+ ..+||.|...++++
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~-G~~V~liEk-~~~GG~~~~~gcip   50 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEE-FRYGGTCVIRGCVP   50 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEEES-SCTTHHHHHHSHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCEEEEEeC-CCCCCcccccCchh
Confidence            58999999999999999999999 999999999 57888876655544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.29  E-value=7.4e-12  Score=103.64  Aligned_cols=146  Identities=19%  Similarity=0.227  Sum_probs=90.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      |||+|||||++|+.+|..|++. |.+|+|||+.+..-....    .    +..        ..+++.        .....
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~-g~~v~lie~~~~~~~~~~----~----~~~--------~~~~~~--------~~~~~   56 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA-GLKVLVLDGGRSKVKGVS----R----VPN--------YPGLLD--------EPSGE   56 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSCCTTTTCS----C----CCC--------STTCTT--------CCCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCcccCch----h----hhc--------cCCCcC--------CCCHH
Confidence            7999999999999999999999 999999999752211000    0    000        000100        01345


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+.+.+.+.+. +.|++++.+ +|+++..+++.+ .+.+.              ++ ++.+|.||+|+|..+     .+.
T Consensus        57 ~~~~~l~~~~~-~~gv~v~~~-~v~~i~~~~~~~-~v~~~--------------~g-~i~ad~vI~A~G~~~-----~~~  113 (180)
T 2ywl_A           57 ELLRRLEAHAR-RYGAEVRPG-VVKGVRDMGGVF-EVETE--------------EG-VEKAERLLLCTHKDP-----TLP  113 (180)
T ss_dssp             HHHHHHHHHHH-HTTCEEEEC-CCCEEEECSSSE-EEECS--------------SC-EEEEEEEEECCTTCC-----HHH
T ss_pred             HHHHHHHHHHH-HcCCEEEeC-EEEEEEEcCCEE-EEEEC--------------CC-EEEECEEEECCCCCC-----Ccc
Confidence            66677777776 579999999 999998765532 23321              22 799999999999653     122


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                        ...++.  +. ...+..+       ...+...|++|+.|+.+..
T Consensus       114 --~~~g~~--~~-~g~i~vd-------~~~~t~~~~i~a~GD~~~~  147 (180)
T 2ywl_A          114 --SLLGLT--RR-GAYIDTD-------EGGRTSYPRVYAAGVARGK  147 (180)
T ss_dssp             --HHHTCC--EE-TTEECCC-------TTCBCSSTTEEECGGGGTC
T ss_pred             --ccCCCC--cc-CceEEeC-------CCCCcCCCCEEEeecccCc
Confidence              222221  11 1111121       1223457999999998753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.29  E-value=3.3e-11  Score=114.20  Aligned_cols=140  Identities=19%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCcccc---------------------------hhh
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLF---------------------------SAM  140 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~~~gg~~~~~g~~~---------------------------~~~  140 (321)
                      .+||+|||||++|+++|+.|++. |.  +|+|+|+...+||.+....+..                           ..+
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~-G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhc-CCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            58999999999999999999999 99  9999999988877643322100                           000


Q ss_pred             hc--cchHHHHHHH-cCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815          141 VV--RKPAHIFLDE-LGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (321)
Q Consensus       141 ~~--~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~  217 (321)
                      ..  .......+.. .++++...  .....+...+.+.|.+.+. +.+..++++++|+++..+++.+. |.+.+      
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~-~~~~~i~~~t~V~~v~~~~~~~~-V~~~~------  154 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQ--TLQFPHRHTIQEYQRIYAQ-PLLPFIKLATDVLDIEKKDGSWV-VTYKG------  154 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTT--CCSSCBHHHHHHHHHHHHG-GGGGGEECSEEEEEEEEETTEEE-EEEEE------
T ss_pred             hhhhccCCCHHHhccCCCCCCCC--CCCCCCHHHHHHHHHHHHH-HhhCeEEeCCEEEEEEeCCCeEE-EEEee------
Confidence            00  0000011111 12222211  1112244566666665554 45788999999999988776432 33321      


Q ss_pred             cCCCCCCC-ceEEEcCeEEEcCCCCCC
Q 020815          218 HDTQSCMD-PNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       218 ~~~~~~g~-~~~i~a~~VI~AtG~~~~  243 (321)
                      ..   +|+ ..++.+|.||+|+|.++.
T Consensus       155 ~~---~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          155 TK---AGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             SS---TTCCEEEEEESEEEECCCSSSS
T ss_pred             cC---CCCeeEEEEeCEEEECCCCCCC
Confidence            00   012 237999999999998653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.29  E-value=5.4e-12  Score=118.14  Aligned_cols=136  Identities=20%  Similarity=0.271  Sum_probs=81.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcccc-Cc-cc-chhhhcc------chHHHHHHH-cCC---
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWL-GG-QL-FSAMVVR------KPAHIFLDE-LGI---  155 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~-~g-~~-~~~~~~~------~~~~~~l~~-~g~---  155 (321)
                      ++||+|||||++|+++|++|++. ||++|+|||+....++.++. ++ .+ .......      ....+.+.+ .+.   
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  115 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKT  115 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCC
Confidence            58999999999999999999984 48999999998655554333 22 12 1111000      011122221 111   


Q ss_pred             -CcccCC---------------------------------C--e------EEEecHHHHHHHHHHHHHcCCCcEEEcCce
Q 020815          156 -DYDEQD---------------------------------N--Y------VVIKHAALFTSTIMSKLLARPNVKLFNAVA  193 (321)
Q Consensus       156 -~~~~~~---------------------------------~--~------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~  193 (321)
                       .+...+                                 .  .      ....+...+...|.+.+. +.|++++++++
T Consensus       116 ~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~-~~Gv~i~~~~~  194 (405)
T 3c4n_A          116 LEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAI-GQGAGLLLNTR  194 (405)
T ss_dssp             CCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHH-TTTCEEECSCE
T ss_pred             CcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHH-HCCCEEEcCCE
Confidence             111100                                 0  0      012244668888888887 67999999999


Q ss_pred             EE---------EEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          194 AE---------DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       194 v~---------~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      |+         ++..+++++ +|.+.               ..+++||.||+|+|.++
T Consensus       195 v~~~~g~~~~~~i~~~~~~v-~v~~~---------------~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          195 AELVPGGVRLHRLTVTNTHQ-IVVHE---------------TRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             EEEETTEEEEECBCC--------CBC---------------CEEEEEEEEEECCGGGH
T ss_pred             EEeccccccccceEeeCCeE-EEEEC---------------CcEEECCEEEECCCccH
Confidence            99         887666655 44431               14799999999999543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.29  E-value=8.9e-12  Score=120.45  Aligned_cols=137  Identities=16%  Similarity=0.184  Sum_probs=87.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCcccchhhhccc----hHHHHHHHcCCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRK----PAHIFLDELGID  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--------~~gg~~~~~g~~~~~~~~~~----~~~~~l~~~g~~  156 (321)
                      .+|||+|||||++|+++|+.|++. |++|+|||+.+        ..||.|.+.||++.+.+...    ...+.+..+|+.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~-G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~  109 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK  109 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            469999999999999999999999 99999999954        67888888888887765443    233456677776


Q ss_pred             cccCCCeEE--E-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEE
Q 020815          157 YDEQDNYVV--I-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME  230 (321)
Q Consensus       157 ~~~~~~~~~--~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~  230 (321)
                      +.......+  . .....+...+   ++...+..+++++.+. +..  .+.+.+. |..            .+++..+++
T Consensus       110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~--~d~~~v~-v~~------------~~g~~~~i~  173 (519)
T 3qfa_A          110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQF--IGPHRIK-ATN------------NKGKEKIYS  173 (519)
T ss_dssp             CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEE--EETTEEE-EEC------------TTCCCCEEE
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--eeCCEEE-EEc------------CCCCEEEEE
Confidence            543211111  0 0111122111   1222335789998873 332  2444322 211            112345899


Q ss_pred             cCeEEEcCCCCC
Q 020815          231 AKVVVSSCGHDG  242 (321)
Q Consensus       231 a~~VI~AtG~~~  242 (321)
                      +|+||+|||...
T Consensus       174 ~d~lViATGs~p  185 (519)
T 3qfa_A          174 AERFLIATGERP  185 (519)
T ss_dssp             EEEEEECCCEEE
T ss_pred             CCEEEEECCCCc
Confidence            999999999654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.28  E-value=1.7e-11  Score=119.16  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=82.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHHHHcCC--CcccCCCeEE
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDELGI--DYDEQDNYVV  165 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l~~~g~--~~~~~~~~~~  165 (321)
                      .++||||||||++|+.+|+.|++. |++|+|||+++.+||.+.. ...+...+.... ...+.-....  .+.....   
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~v~iiE~~~~~GGtw~~-~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~---   82 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGEDVGGTWYW-NRYPGCRLDTESYAYGYFALKGIIPEWEWSEN---   82 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTHHHH-CCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBS---
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCCCCcccc-CCCCceeecCchhhcccccCcccccCCCcccc---
Confidence            368999999999999999999998 9999999999888886432 222211111110 0011101000  0111111   


Q ss_pred             EecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          166 IKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .....++...+.+.+. +.++  .++++++|+++..+++ ....|.+.              ++.++++|+||+|+|..+
T Consensus        83 ~~~~~ei~~yl~~~~~-~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~--------------~G~~~~ad~lV~AtG~~s  147 (545)
T 3uox_A           83 FASQPEMLRYVNRAAD-AMDVRKHYRFNTRVTAARYVENDRLWEVTLD--------------NEEVVTCRFLISATGPLS  147 (545)
T ss_dssp             SCBHHHHHHHHHHHHH-HHTCGGGEECSCCEEEEEEEGGGTEEEEEET--------------TTEEEEEEEEEECCCSCB
T ss_pred             CCCHHHHHHHHHHHHH-HcCCcCcEEECCEEEEEEEeCCCCEEEEEEC--------------CCCEEEeCEEEECcCCCC
Confidence            1234555555444443 4555  7889999999988754 23344442              236899999999999654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.27  E-value=1.2e-11  Score=118.52  Aligned_cols=136  Identities=21%  Similarity=0.241  Sum_probs=85.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEec--------cCCCCCccccCcccchhhhccch----HHHHHHHcCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ--------SVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDY  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk--------~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~  157 (321)
                      +|||+|||||++|+++|+.|++. |++|+||||        ....||.|.+.||++.+.+....    ..+.+..+|+.+
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~-G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            69999999999999999999999 999999997        45689999888888877664432    234556777765


Q ss_pred             ccCC--CeEE-EecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          158 DEQD--NYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       158 ~~~~--~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      ....  ++.. ......+...+   +....+..+++++.+. +..  .+.+.+ .|..            .+++..++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~--~~~~~v-~v~~------------~~g~~~~~~~  148 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASF--VDEHTV-RGVD------------KGGKATLLSA  148 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEE--SSSSEE-EEEC------------TTSCEEEEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCeE-EEEe------------CCCceEEEEC
Confidence            4321  1110 01111122211   1222335789988773 322  123322 2221            1123368999


Q ss_pred             CeEEEcCCCCC
Q 020815          232 KVVVSSCGHDG  242 (321)
Q Consensus       232 ~~VI~AtG~~~  242 (321)
                      |+||+|||...
T Consensus       149 d~lViATGs~p  159 (488)
T 3dgz_A          149 EHIVIATGGRP  159 (488)
T ss_dssp             EEEEECCCEEE
T ss_pred             CEEEEcCCCCC
Confidence            99999999654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.27  E-value=8.3e-12  Score=112.18  Aligned_cols=118  Identities=18%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .|||+|||||+||++||++|++. |++|+|||+. ..||.+. +|+++........       .+++        .....
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~-g~~v~liE~~-~~gg~~~-~G~~~~~~~i~~~-------~g~~--------~~i~~   65 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRS-SLKPVMYEGF-MAGGVAA-GGQLTTTTIIENF-------PGFP--------NGIDG   65 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCS-SGGGCCT-TCGGGGSSEECCS-------TTCT--------TCEEH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCCccc-CCCcCChHHhhhc-------cCCc--------ccCCH
Confidence            49999999999999999999999 9999999997 3555554 3555443222110       0111        01234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .++...+.+.+. +.++++... .+.....+.+... +.+.              +..++.+|.||+|||...
T Consensus        66 ~~l~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~-~~~~--------------~~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           66 NELMMNMRTQSE-KYGTTIITE-TIDHVDFSTQPFK-LFTE--------------EGKEVLTKSVIIATGATA  121 (314)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECC-CEEEEECSSSSEE-EEET--------------TCCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHh-hcCcEEEEe-EEEEeecCCCceE-EEEC--------------CCeEEEEeEEEEcccccc
Confidence            566666666665 578888776 4444443333221 2221              237899999999999643

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.26  E-value=7.6e-11  Score=114.05  Aligned_cols=65  Identities=12%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ...+...+.+.|.+.+.+..|++++++ +|+++..++ +.+..|.+.+              +.+++||+||+|+|..+.
T Consensus       170 ~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~--------------g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          170 YHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQ--------------NGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             EEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESS--------------SCEEECSEEEECSGGGCC
T ss_pred             EEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECC--------------CCEEEcCEEEECCCcchH
Confidence            345667788888888874379999999 699998764 4455665532              145999999999998765


Q ss_pred             C
Q 020815          244 F  244 (321)
Q Consensus       244 ~  244 (321)
                      .
T Consensus       235 ~  235 (526)
T 2pyx_A          235 L  235 (526)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.26  E-value=2e-11  Score=110.24  Aligned_cols=116  Identities=18%  Similarity=0.209  Sum_probs=80.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+.+||.++.  ......+.                ....+. ....
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gG~~~~--~~~~~~~~----------------~~~~~~-~~~~   66 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR-QASVKIIESLPQLGGQLSA--LYPEKYIY----------------DVAGFP-KIRA   66 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHH--HCTTSEEC----------------CSTTCS-SEEH
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCCceehh--cCCCceEe----------------ccCCCC-CCCH
Confidence            58999999999999999999999 9999999999887765421  00000000                000111 0134


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .++...+.+.+. +.+++++.+++|+++..+++....|.+.+               .++.+|+||+|+|..
T Consensus        67 ~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~v~~~~---------------g~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           67 QELINNLKEQMA-KFDQTICLEQAVESVEKQADGVFKLVTNE---------------ETHYSKTVIITAGNG  122 (332)
T ss_dssp             HHHHHHHHHHHT-TSCCEEECSCCEEEEEECTTSCEEEEESS---------------EEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHH-HhCCcEEccCEEEEEEECCCCcEEEEECC---------------CEEEeCEEEECCCCC
Confidence            667777766665 67999999999999987765233344421               349999999999973

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.26  E-value=5e-11  Score=114.41  Aligned_cols=47  Identities=26%  Similarity=0.386  Sum_probs=41.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccch
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS  138 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~  138 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||++ .+||.|++.||++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~-G~~V~liE~~-~~GGtc~~~gciPs   54 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGG-AYGTTCARVGCMPS   54 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-CSCEEEEESS-CSSCHHHHHSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCC-CCCCcccccChhcC
Confidence            58999999999999999999999 9999999997 58998876665543

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.25  E-value=2.4e-11  Score=118.56  Aligned_cols=57  Identities=18%  Similarity=0.181  Sum_probs=44.6

Q ss_pred             HHHHHcCCCcEEEcCceEEEEEEE----CCEEEEEEEeecceecccCCCCCCCceEEEcC-eEEEcCCCCCC
Q 020815          177 MSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDGP  243 (321)
Q Consensus       177 ~~~~~~~~gv~i~~~~~v~~l~~~----~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~-~VI~AtG~~~~  243 (321)
                      +..+.++.|++|+.++.|++|+.+    +++++||+...          .+|...+++|+ -||+|+|++++
T Consensus       233 L~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~----------~~G~~~~v~A~kEVILsAGa~~S  294 (583)
T 3qvp_A          233 LLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT----------HKGNTHNVYAKHEVLLAAGSAVS  294 (583)
T ss_dssp             TTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEES----------STTCEEEEEEEEEEEECSCTTTH
T ss_pred             HHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEe----------cCCcEEEEEECCEEEEeCCccCC
Confidence            333445789999999999999998    78999998852          12345788996 69999998874

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.25  E-value=5.2e-11  Score=118.29  Aligned_cols=104  Identities=21%  Similarity=0.294  Sum_probs=67.8

Q ss_pred             cccEEEECCChHHHHHHHHhhc-----CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC--------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-----NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID--------  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-----~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~--------  156 (321)
                      ++||+|||||++|+++|+.|++     . |++|+||||.+.+..... +      ........+.|+++|+.        
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~-Gi~v~viE~~~~~~~~gr-a------~~l~~~tle~l~~lGl~~~l~~~~~   79 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTKVYNGQ-A------DGLQCRTLESLKNLGLADKILSEAN   79 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSSCCCSCS-C------CEECHHHHHHHHTTTCHHHHHTTCB
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC-CCCEEEEeCCCCCCCCCc-e------eEEChHHHHHHHHCCCHHHHHHhcc
Confidence            5899999999999999999999     9 999999999764321100 0      11122233344444331        


Q ss_pred             -c------ccC-------------------CCeEEEecHHHHHHHHHHHHHcCC--CcEEEcCceEEEEEEEC
Q 020815          157 -Y------DEQ-------------------DNYVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVKG  201 (321)
Q Consensus       157 -~------~~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~l~~~~  201 (321)
                       +      +..                   .......+...+.+.|++.+.+..  +++++++++++++..++
T Consensus        80 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~  152 (665)
T 1pn0_A           80 DMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDS  152 (665)
T ss_dssp             CCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECG
T ss_pred             ccceEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecC
Confidence             0      000                   001223456677788888876432  48999999999998864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.25  E-value=3e-11  Score=110.92  Aligned_cols=118  Identities=20%  Similarity=0.227  Sum_probs=81.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+.+||.+...  ......               ++ ...+. ....
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg~~~~~--~~~~~~---------------~~-~~~~~-~~~~   73 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMN-NISCRIIESMPQLGGQLAAL--YPEKHI---------------YD-VAGFP-EVPA   73 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHT--CTTSEE---------------CC-STTCS-SEEH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCCCccccc--CCCccc---------------cc-CCCCC-CCCH
Confidence            58999999999999999999999 99999999988777654210  000000               00 00010 0134


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++.+++|+.+..+++....|.+.              ++.++.+|+||+|+|..+
T Consensus        74 ~~~~~~l~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~v~~~--------------~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           74 IDLVESLWAQAE-RYNPDVVLNETVTKYTKLDDGTFETRTN--------------TGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHHHHHHH-TTCCEEECSCCEEEEEECTTSCEEEEET--------------TSCEEEEEEEEECCTTCS
T ss_pred             HHHHHHHHHHHH-HhCCEEEcCCEEEEEEECCCceEEEEEC--------------CCcEEEeeEEEEccCCCc
Confidence            567777777776 6789999999999998765422233332              125799999999999854

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.25  E-value=2.6e-11  Score=117.45  Aligned_cols=138  Identities=15%  Similarity=0.217  Sum_probs=85.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCcccchhhhccchHH-HHHH----HcCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKPAH-IFLD----ELGID  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--------~~gg~~~~~g~~~~~~~~~~~~~-~~l~----~~g~~  156 (321)
                      +|||||||+|++|+.+|.++++. |+||+|||+..        ..||+|.+.||++++.+...... +.++    .+|+.
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~-G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~  120 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH-GARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWK  120 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcc
Confidence            69999999999999999999999 99999999743        47999999999999877664322 2222    24544


Q ss_pred             cccC-CCeEE-EecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          157 YDEQ-DNYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       157 ~~~~-~~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      +... .+|.. ..+.....+.+   +....++.+|+++.+.   .-..+.+.+.. ....          ..+...++++
T Consensus       121 ~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~---a~f~~~~~v~V-~~~~----------~~~~~~~i~a  186 (542)
T 4b1b_A          121 FDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGL---AKLKDKNTVSY-YLKG----------DLSKEETVTG  186 (542)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEE---EEEEETTEEEE-EEC------------CCCEEEEEE
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee---EEEcCCCcceE-eecc----------cCCceEEEee
Confidence            3211 00100 00111111111   1222336789998773   22334554432 2110          1113478999


Q ss_pred             CeEEEcCCCCC
Q 020815          232 KVVVSSCGHDG  242 (321)
Q Consensus       232 ~~VI~AtG~~~  242 (321)
                      +.+|+|||...
T Consensus       187 ~~iiIATGs~P  197 (542)
T 4b1b_A          187 KYILIATGCRP  197 (542)
T ss_dssp             EEEEECCCEEE
T ss_pred             eeEEeccCCCC
Confidence            99999999754

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.25  E-value=3.2e-11  Score=114.08  Aligned_cols=58  Identities=10%  Similarity=0.036  Sum_probs=46.0

Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE---------------ECCEEEEEEEeecceecccCCCCCCCceEE--E
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV---------------KGGRVGGVVTNWALVSMNHDTQSCMDPNVM--E  230 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~---------------~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i--~  230 (321)
                      +...+...|.+.+. +.|++++++++|++|..               +++++.+|.+..               .++  +
T Consensus       179 ~~~~l~~~L~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~---------------g~i~~~  242 (448)
T 3axb_A          179 DAEKVVDYYYRRAS-GAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSD---------------GTRVEV  242 (448)
T ss_dssp             CHHHHHHHHHHHHH-HTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETT---------------SCEEEE
T ss_pred             cHHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCC---------------CEEeec
Confidence            45678888888887 57999999999999988               566676776631               257  9


Q ss_pred             cCeEEEcCCCC
Q 020815          231 AKVVVSSCGHD  241 (321)
Q Consensus       231 a~~VI~AtG~~  241 (321)
                      ||.||+|+|.+
T Consensus       243 Ad~VV~AtG~~  253 (448)
T 3axb_A          243 GEKLVVAAGVW  253 (448)
T ss_dssp             EEEEEECCGGG
T ss_pred             CCEEEECCCcC
Confidence            99999999954

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.24  E-value=2.1e-11  Score=115.84  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCC-----CeEEEEeccCCCCCccccCcccchhhhc----------------cchHH
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPN-----IQIAIIEQSVSPGGGAWLGGQLFSAMVV----------------RKPAH  147 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-----~~V~liEk~~~~gg~~~~~g~~~~~~~~----------------~~~~~  147 (321)
                      ..|||+|||||++|+++|+.|++. |     .+|+|||+.+..|   |..+.++.....                .....
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~~g---~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~  104 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGDYR---WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFV  104 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSSCC---SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCCCC---CcCCCCCCCCcCCcchhhccccccCCCCCCChh
Confidence            358999999999999999999998 8     9999999998766   333222110000                00122


Q ss_pred             HHHHHcCCCcc--cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEE--EEEeecceecccCCC
Q 020815          148 IFLDELGIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGG--VVTNWALVSMNHDTQ  221 (321)
Q Consensus       148 ~~l~~~g~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~g--v~~~~~~~~~~~~~~  221 (321)
                      .|+.+.+..+.  ....+  ......+...+... .++.+++++++++|+++..+  +++...  |.+.++         
T Consensus       105 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g---------  172 (463)
T 3s5w_A          105 NYLHKHDRLVDFINLGTF--YPCRMEFNDYLRWV-ASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNA---------  172 (463)
T ss_dssp             HHHHHTTCHHHHHHHCCS--CCBHHHHHHHHHHH-HTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEET---------
T ss_pred             HhhhhcCceeecccccCC--CCCHHHHHHHHHHH-HHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecC---------
Confidence            33333331110  00010  11334555554444 44678999999999999876  244432  333221         


Q ss_pred             CCCCceEEEcCeEEEcCCCCC
Q 020815          222 SCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       222 ~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       .++..++.+|.||+|||+..
T Consensus       173 -~g~~~~~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          173 -DGEELVRTTRALVVSPGGTP  192 (463)
T ss_dssp             -TSCEEEEEESEEEECCCCEE
T ss_pred             -CCceEEEEeCEEEECCCCCC
Confidence             11234899999999999743

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.24  E-value=5.7e-11  Score=106.73  Aligned_cols=111  Identities=19%  Similarity=0.214  Sum_probs=77.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |.+|+|||+.  +||.+........                ++  ....    ...
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~--~gg~~~~~~~~~~----------------~~--~~~~----~~~   69 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARY-MLKTLVIGET--PGGQLTEAGIVDD----------------YL--GLIE----IQA   69 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS--TTGGGGGCCEECC----------------ST--TSTT----EEH
T ss_pred             ccCEEEECccHHHHHHHHHHHHC-CCcEEEEecc--CCCeecccccccc----------------cC--CCCC----CCH
Confidence            58999999999999999999999 9999999998  6665432211110                00  0000    234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.|++++. ++|+++..+++.+ .+.+.              +..++.+|.||+|+|...
T Consensus        70 ~~~~~~~~~~~~-~~~v~~~~-~~v~~i~~~~~~~-~v~~~--------------~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           70 SDMIKVFNKHIE-KYEVPVLL-DIVEKIENRGDEF-VVKTK--------------RKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             HHHHHHHHHHHH-TTTCCEEE-SCEEEEEEC--CE-EEEES--------------SSCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEE-EEEEEEEecCCEE-EEEEC--------------CCCEEEcCEEEECcCCCC
Confidence            567777777665 67999999 7999988765532 23332              225899999999999753

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.23  E-value=8.6e-11  Score=114.00  Aligned_cols=64  Identities=16%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ...+...+...|.+.+. +.|++++.+ +|+++..++ +.+.+|.+.+              +.+++||.||+|+|..+.
T Consensus       160 ~~i~~~~l~~~L~~~a~-~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~--------------g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          160 WHFDAHLVADFLKRWAV-ERGVNRVVD-EVVDVRLNNRGYISNLLTKE--------------GRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             EEECHHHHHHHHHHHHH-HTTCEEEEC-CEEEEEECTTSCEEEEEETT--------------SCEECCSEEEECCGGGCC
T ss_pred             EEEeHHHHHHHHHHHHH-HCCCEEEEe-eEeEEEEcCCCcEEEEEECC--------------CcEEEeCEEEECCCCchh
Confidence            34556778888888887 479999999 899998754 4456666532              257999999999997765


Q ss_pred             C
Q 020815          244 F  244 (321)
Q Consensus       244 ~  244 (321)
                      .
T Consensus       224 ~  224 (538)
T 2aqj_A          224 L  224 (538)
T ss_dssp             C
T ss_pred             h
Confidence            4

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.23  E-value=6.5e-11  Score=115.07  Aligned_cols=130  Identities=18%  Similarity=0.158  Sum_probs=83.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC---cc---cchhhhccchHHHHHHHcCCCcccCCCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG---GQ---LFSAMVVRKPAHIFLDELGIDYDEQDNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~---g~---~~~~~~~~~~~~~~l~~~g~~~~~~~~~  163 (321)
                      ++||||||||++|+.+|+.|++. |++|+|||+++.+||.+...   ++   ............+.+..+...    .. 
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~----~~-   94 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWS----EK-   94 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCS----SS-
T ss_pred             CCCEEEECchHHHHHHHHHHHhC-CCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCc----cC-
Confidence            58999999999999999999998 99999999998888865422   11   111111111001112222211    11 


Q ss_pred             EEEecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          164 VVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                        .....++...+.+.+. +.++  +++++++|+++..+++ ....|.+.              ++.++++|+||+|+|.
T Consensus        95 --~~~~~ei~~yl~~~~~-~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~--------------~G~~i~ad~lV~AtG~  157 (549)
T 4ap3_A           95 --YATQPEILAYLEHVAD-RFDLRRDIRFDTRVTSAVLDEEGLRWTVRTD--------------RGDEVSARFLVVAAGP  157 (549)
T ss_dssp             --SCBHHHHHHHHHHHHH-HTTCGGGEECSCCEEEEEEETTTTEEEEEET--------------TCCEEEEEEEEECCCS
T ss_pred             --CCCHHHHHHHHHHHHH-HcCCCccEEECCEEEEEEEcCCCCEEEEEEC--------------CCCEEEeCEEEECcCC
Confidence              1244566666555554 5676  8999999999988765 23334442              2257999999999995


Q ss_pred             CC
Q 020815          241 DG  242 (321)
Q Consensus       241 ~~  242 (321)
                      .+
T Consensus       158 ~s  159 (549)
T 4ap3_A          158 LS  159 (549)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.22  E-value=7.3e-11  Score=113.68  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=49.7

Q ss_pred             EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ...+...+...|.+.+. +.|++++++ +|+++..+ ++.+.+|.+.+              +.+++||.||+|+|..+.
T Consensus       168 ~~~~~~~l~~~L~~~a~-~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~--------------g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          168 YHFDADEVARYLSEYAI-ARGVRHVVD-DVQHVGQDERGWISGVHTKQ--------------HGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             EEECHHHHHHHHHHHHH-HTTCEEEEC-CEEEEEECTTSCEEEEEESS--------------SCEEECSEEEECCGGGCC
T ss_pred             EEEcHHHHHHHHHHHHH-HCCCEEEEC-eEeEEEEcCCCCEEEEEECC--------------CCEEEcCEEEECCCcchH
Confidence            44567888888888887 479999999 99999875 45566676632              247999999999997765


Q ss_pred             C
Q 020815          244 F  244 (321)
Q Consensus       244 ~  244 (321)
                      .
T Consensus       232 ~  232 (511)
T 2weu_A          232 L  232 (511)
T ss_dssp             C
T ss_pred             H
Confidence            4

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.21  E-value=1.3e-10  Score=107.98  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      +|+|||||++||++|+.|++. |++|+|+||.+.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~-G~~v~v~Er~~~~   36 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKH-GIKVTIYERNSAA   36 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEecCCCC
Confidence            799999999999999999999 9999999997654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.21  E-value=5.1e-11  Score=114.31  Aligned_cols=134  Identities=24%  Similarity=0.383  Sum_probs=82.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHH----HHHcCCCcccC-CCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF----LDELGIDYDEQ-DNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~----l~~~g~~~~~~-~~~  163 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+.+.+||.|++.++++.+.+..... ...    +..+|+..... .++
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  103 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQL-GMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL  103 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence            58999999999999999999999 999999999889999998888887766544321 122    23344432211 000


Q ss_pred             EEE-ecHH----HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          164 VVI-KHAA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       164 ~~~-~~~~----~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      ... ....    .+... ++...+..+++++.+....   .+.+.+ .|..            .+++..++.+|.||+||
T Consensus       104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~---~~~~~~-~v~~------------~~g~~~~~~~d~lViAT  166 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDG-VSFLFKKNKIDGFQGTGKV---LGQGKV-SVTN------------EKGEEQVLEAKNVVIAT  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHTTCEEEESEEEE---CSSSEE-EEEC------------TTSCEEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhCCCEEEEEEEEE---ecCCEE-EEEe------------CCCceEEEEeCEEEEcc
Confidence            000 0011    11122 2223335789998884322   233322 2221            11233689999999999


Q ss_pred             CCC
Q 020815          239 GHD  241 (321)
Q Consensus       239 G~~  241 (321)
                      |..
T Consensus       167 Gs~  169 (491)
T 3urh_A          167 GSD  169 (491)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            965

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.20  E-value=2.1e-10  Score=110.97  Aligned_cols=46  Identities=20%  Similarity=0.212  Sum_probs=40.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL  136 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~  136 (321)
                      ++||+|||||++|+++|++|++. |.+|+|||++..+||.|.+.+++
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~GG~~~~~g~~   88 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFLGGSCPHNACV   88 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSCHHHHHSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCcccccCcC
Confidence            68999999999999999999999 99999999997788887655544

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.20  E-value=3.7e-11  Score=114.06  Aligned_cols=47  Identities=23%  Similarity=0.329  Sum_probs=40.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccch
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS  138 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~  138 (321)
                      +|||+|||||++|+++|++|++. |.+|+|||++ ..||.|.+.+|++.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~~~~~gciP~   50 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAK-ELGGTCVNVGCVPK   50 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS-CTTHHHHHHSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEcCC-CCCCcccccCccCh
Confidence            58999999999999999999998 9999999997 67888766555443

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.20  E-value=1.5e-10  Score=103.79  Aligned_cols=112  Identities=21%  Similarity=0.307  Sum_probs=77.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      |||+|||||++|+++|+.|++. |. +|+|||+. .+||.+........                  +   ..+......
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~-g~~~v~lie~~-~~gg~~~~~~~~~~------------------~---~~~~~~~~~   58 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG-GVKNAVLFEKG-MPGGQITGSSEIEN------------------Y---PGVKEVVSG   58 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCSSEEEECSS-STTCGGGGCSCBCC------------------S---TTCCSCBCH
T ss_pred             ceEEEECccHHHHHHHHHHHHC-CCCcEEEEcCC-CCCccccccccccc------------------C---CCCcccCCH
Confidence            7999999999999999999999 99 99999995 56665432211100                  0   000011244


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++. .+|+++..+++.+. +.+.              ++.++++|.||+|+|..+
T Consensus        59 ~~~~~~l~~~~~-~~~v~~~~-~~v~~i~~~~~~~~-v~~~--------------~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           59 LDFMQPWQEQCF-RFGLKHEM-TAVQRVSKKDSHFV-ILAE--------------DGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             HHHHHHHHHHHH-TTSCEEEC-SCEEEEEEETTEEE-EEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEE-EEEEEEEEcCCEEE-EEEc--------------CCCEEECCEEEECCCCCC
Confidence            566677666665 67999998 68999988776432 2221              125799999999999654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.19  E-value=1.1e-10  Score=109.83  Aligned_cols=40  Identities=33%  Similarity=0.583  Sum_probs=37.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      |||||||||++|++||+.|++. |.+|+|||+++.+||.++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~   41 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGRAY   41 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCccCeec
Confidence            7999999999999999999999 999999999888988875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.19  E-value=9.8e-11  Score=106.18  Aligned_cols=116  Identities=22%  Similarity=0.269  Sum_probs=79.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+.+||.+...  .....+.           ..     ..+.. ...
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg~~~~~--~~~~~~~-----------~~-----~~~~~-~~~   64 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMR-GLSFRFVDPLPEPGGQLTAL--YPEKYIY-----------DV-----AGFPK-VYA   64 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSCHHHHHT--CTTSEEC-----------CS-----TTCSS-EEH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCCCeeecc--CCCceee-----------cc-----CCCCC-CCH
Confidence            58999999999999999999999 99999999988777643211  0000000           00     01111 134


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+...+.+.+. +.+++++.+++|+.+..+++.+ .+.+.              ++.++.+|+||+|+|..
T Consensus        65 ~~~~~~l~~~~~-~~~~~~~~~~~v~~i~~~~~~~-~v~~~--------------~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           65 KDLVKGLVEQVA-PFNPVYSLGERAETLEREGDLF-KVTTS--------------QGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHHHHHHHG-GGCCEEEESCCEEEEEEETTEE-EEEET--------------TSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHH-HcCCEEEeCCEEEEEEECCCEE-EEEEC--------------CCCEEEeCEEEECCCCC
Confidence            566677766665 5689999999999998876632 23331              12579999999999974

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.19  E-value=1.5e-10  Score=108.55  Aligned_cols=38  Identities=39%  Similarity=0.538  Sum_probs=36.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ||+|||||++|+++|++|++. |.+|+|+|+++.+||.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~GG~~   39 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIGGRF   39 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCcee
Confidence            899999999999999999999 99999999998888765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.19  E-value=7.4e-11  Score=106.66  Aligned_cols=114  Identities=20%  Similarity=0.231  Sum_probs=76.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+. .+||.+........ .            .+++.        ....
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~~-~------------~~~~~--------~~~~   64 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRA-QLSTLILEKG-MPGGQIAWSEEVEN-F------------PGFPE--------PIAG   64 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTGGGGGCSCBCC-S------------TTCSS--------CBCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHc-CCcEEEEeCC-CCCccccccccccc-C------------CCCCC--------CCCH
Confidence            58999999999999999999999 9999999998 56665432211100 0            01110        1234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.|++++. .+++++..+  ++....+.+.              ++.++++|+||+|||...
T Consensus        65 ~~~~~~l~~~~~-~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~--------------~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           65 MELAQRMHQQAE-KFGAKVEM-DEVQGVQHDATSHPYPFTVRG--------------YNGEYRAKAVILATGADP  123 (325)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEE-CCEEEEEECTTSSSCCEEEEE--------------SSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEe-eeEEEEEeccCCCceEEEEEC--------------CCCEEEeCEEEECcCCCc
Confidence            566666666665 57999987 488888766  3321122222              125799999999999643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.19  E-value=4.6e-11  Score=108.16  Aligned_cols=117  Identities=11%  Similarity=0.195  Sum_probs=78.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC----CCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV----SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVV  165 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~----~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  165 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+    .+||..........                  +   ..+..
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~vie~~~~~~~~~gg~~~~~~~~~~------------------~---~~~~~   79 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARA-EIKPILYEGMMANGIAAGGQLTTTTEIEN------------------F---PGFPD   79 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSBTTBCTTCGGGGSSEECC------------------S---TTCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCCCCCCCcCcccccchhhcc------------------c---CCCcc
Confidence            68999999999999999999999 99999999954    45554322110000                  0   00000


Q ss_pred             EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          166 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ......+...+.+.+. +.+++++.++ |+++..+++.+. +.+.      ..     .+..++.+|.||+|+|...
T Consensus        80 ~~~~~~~~~~~~~~~~-~~gv~i~~~~-v~~i~~~~~~~~-v~~~------~~-----~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           80 GLTGSELMDRMREQST-KFGTEIITET-VSKVDLSSKPFK-LWTE------FN-----EDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             CEEHHHHHHHHHHHHH-HTTCEEECSC-EEEEECSSSSEE-EEET------TC-----SSSCCEEEEEEEECCCEEE
T ss_pred             cCCHHHHHHHHHHHHH-HcCCEEEEeE-EEEEEEcCCEEE-EEEE------ec-----CCCcEEEeCEEEECcCCCc
Confidence            1234667777777776 5799999997 888877665443 2221      00     1236789999999999743

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.18  E-value=2.4e-10  Score=111.16  Aligned_cols=65  Identities=18%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ...+...+.+.|.+.+.+..|++++++ +|+++..++ +.+.+|.+.+              +.+++||.||+|+|..+.
T Consensus       189 ~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~--------------G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          189 WHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTAT--------------GRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETT--------------SCEEECSEEEECCGGGCC
T ss_pred             eEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECC--------------CCEEECCEEEECCCCchh
Confidence            345667788888888874339999999 999998754 5566776632              257999999999997765


Q ss_pred             C
Q 020815          244 F  244 (321)
Q Consensus       244 ~  244 (321)
                      .
T Consensus       254 ~  254 (550)
T 2e4g_A          254 L  254 (550)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.18  E-value=2.9e-10  Score=110.43  Aligned_cols=130  Identities=19%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhc-------cchHHHHHHHcCCCcccCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV-------RKPAHIFLDELGIDYDEQDN  162 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~-------~~~~~~~l~~~g~~~~~~~~  162 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||++..+||.+... +.+...+.       .....+.+..+..  ..  .
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~GG~w~~~-~~pg~~~d~~~~~~~~~f~~~~~~~~~~--~~--~   89 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWYWN-RYPGARCDIESIEYCYSFSEEVLQEWNW--TE--R   89 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTHHHHC-CCTTCBCSSCTTTSSCCSCHHHHHHCCC--CB--S
T ss_pred             CCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCCCCccccc-CCCceeecccccccccccChhhhhccCc--cc--c
Confidence            58999999999999999999999 99999999998888765321 11110000       0000011122211  11  1


Q ss_pred             eEEEecHHHHHHHHHHHHHcCC--CcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          163 YVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                         .....++.+.+...+. +.  +.+++++++|+++..+++ ....|.+.              ++.+++||+||+|+|
T Consensus        90 ---~~~~~~i~~yl~~~~~-~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~--------------~G~~~~ad~vV~AtG  151 (542)
T 1w4x_A           90 ---YASQPEILRYINFVAD-KFDLRSGITFHTTVTAAAFDEATNTWTVDTN--------------HGDRIRARYLIMASG  151 (542)
T ss_dssp             ---SCBHHHHHHHHHHHHH-HTTGGGGEECSCCEEEEEEETTTTEEEEEET--------------TCCEEEEEEEEECCC
T ss_pred             ---cCCHHHHHHHHHHHHH-HcCCCceEEcCcEEEEEEEcCCCCeEEEEEC--------------CCCEEEeCEEEECcC
Confidence               1234455555444333 33  467999999999988753 23334442              125799999999999


Q ss_pred             CCCC
Q 020815          240 HDGP  243 (321)
Q Consensus       240 ~~~~  243 (321)
                      ..+.
T Consensus       152 ~~s~  155 (542)
T 1w4x_A          152 QLSV  155 (542)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.18  E-value=4.7e-11  Score=116.50  Aligned_cols=51  Identities=22%  Similarity=0.241  Sum_probs=41.3

Q ss_pred             cCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDG  242 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~  242 (321)
                      ++.|++|+.++.|++|+.+  +++++||+...          .+|...+++| |-||+|+|+++
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~----------~~g~~~~v~A~keVILsaGa~~  270 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVT----------AAGNELNFFADREVILSQGVFE  270 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEE----------TTSCEEEEEEEEEEEECSHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEe----------CCCcEEEEEeeeEEEEcccccC
Confidence            4679999999999999999  78999999853          1134567889 57999999764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.17  E-value=3e-11  Score=115.61  Aligned_cols=144  Identities=18%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch----HHHHHHHcCCCcccCC-CeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQD-NYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~~~~~-~~~  164 (321)
                      +|||+|||||++|+++|+.|++. |.+|+|||+.+.+||.|++.++++.+.+....    ..+++..+|+++.... ++.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~-G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDID   84 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            58999999999999999999999 99999999988899988877776655443321    1233444566543211 110


Q ss_pred             E-EecHHH----HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecce-ecccCCCCCCCceEEEcCeEEEcC
Q 020815          165 V-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       165 ~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~-~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      . ......    +...+.+.+ ++.|++++.++.+.   .+++.+. +...++.. ....   .+++..++++|+||+||
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~~---~~~~~v~-v~~~~g~~~~~~~---~~g~~~~i~ad~lViAt  156 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMA-KSRKVDVIQGDGQF---LDPHHLE-VSLTAGDAYEQAA---PTGEKKIVAFKNCIIAA  156 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTCEEEEEEEEE---EETTEEE-EEEEEEEETTEEE---EEEEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCcEEEeeEEEE---ccCCEEE-EEecCCccccccc---ccCcceEEEcCEEEECC
Confidence            0 001111    112223333 35799999886543   3454432 22111000 0000   00122579999999999


Q ss_pred             CCCC
Q 020815          239 GHDG  242 (321)
Q Consensus       239 G~~~  242 (321)
                      |+..
T Consensus       157 Gs~p  160 (482)
T 1ojt_A          157 GSRV  160 (482)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.17  E-value=3.1e-10  Score=102.25  Aligned_cols=111  Identities=23%  Similarity=0.276  Sum_probs=77.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ++||+|||||++|+++|+.|++. |++|+|||+. .+||.+........                  +   ..+ .....
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~~------------------~---~~~-~~~~~   71 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARS-GFSVAILDKA-VAGGLTAEAPLVEN------------------Y---LGF-KSIVG   71 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-STTGGGGGCSCBCC------------------B---TTB-SSBCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCcEEEEeCC-CCCccccccchhhh------------------c---CCC-cccCH
Confidence            58999999999999999999999 9999999995 56665432211100                  0   000 01233


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++. .+++++..+++.+. |.+.               ..++.+|+||+|+|...
T Consensus        72 ~~~~~~~~~~~~-~~~v~~~~-~~v~~i~~~~~~~~-v~~~---------------~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           72 SELAKLFADHAA-NYAKIREG-VEVRSIKKTQGGFD-IETN---------------DDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             HHHHHHHHHHHH-TTSEEEET-CCEEEEEEETTEEE-EEES---------------SSEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEE-eeEEEEEEeCCEEE-EEEC---------------CCEEEeCEEEECCCCCc
Confidence            456666666665 67999988 58999887776433 3331               25789999999999643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.17  E-value=1.9e-11  Score=116.49  Aligned_cols=134  Identities=17%  Similarity=0.210  Sum_probs=82.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHHHHcCCCcccCCCeEEE-e
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDELGIDYDEQDNYVVI-K  167 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~-~  167 (321)
                      +|||+|||||++|+++|+.|++. |++|+||||.+.+||.|...++++.+.+.... ..+.+.++.. +....++... .
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~-G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKA-KYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIAN-VKIPLDFSTVQD   81 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHC-SCCCCCHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhccc-CCCCcCHHHHHH
Confidence            58999999999999999999999 99999999888999999888887766554432 1222222211 0000011000 0


Q ss_pred             cHHHHHH----HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          168 HAALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       168 ~~~~~~~----~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ....+..    ..+....++.+++++.+ ++..+  +.+.+ .|...            +++..++.+|+||+|||..
T Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~-~V~~~------------~g~~~~~~~d~lviAtG~~  143 (466)
T 3l8k_A           82 RKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHV-IVKTD------------EGKEIEAETRYMIIASGAE  143 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEE-EEEET------------TSCEEEEEEEEEEECCCEE
T ss_pred             HHHhheeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeE-EEEcC------------CCcEEEEecCEEEECCCCC
Confidence            1111111    22334445789999888 55544  34432 22221            1122339999999999964

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.16  E-value=8e-11  Score=112.20  Aligned_cols=140  Identities=16%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             ccEEEECCChHHHHHHHHhhc---CCCCe---EEEEeccCCCCCccccC---ccc----------chhhhccchHHHHHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSK---NPNIQ---IAIIEQSVSPGGGAWLG---GQL----------FSAMVVRKPAHIFLD  151 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~---V~liEk~~~~gg~~~~~---g~~----------~~~~~~~~~~~~~l~  151 (321)
                      +||+|||||++|+++|..|++   . |.+   |+|||+.+.+||.+...   ++.          +.....+.. ...+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~-G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~-~~~~~   80 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK-GAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGP-KECLE   80 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT-TCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSC-GGGTC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc-CCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCC-hhhcc
Confidence            699999999999999999999   8 999   99999998888765321   110          000000000 00000


Q ss_pred             HcCCCcccC--CCeEEEecHHHHHHHHHHHHHcCCCcE--EEcCceEEEEEEECC--EEEEEEEeecceecccCCCCCCC
Q 020815          152 ELGIDYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMD  225 (321)
Q Consensus       152 ~~g~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~v~~l~~~~~--~v~gv~~~~~~~~~~~~~~~~g~  225 (321)
                      -.++++...  .......+...+.+.+.+.+. +.+++  ++++++|+.+..+++  .. .|.+.+.         .+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~gv~~~i~~~~~V~~v~~~~~~~~~-~V~~~~~---------~~g~  149 (464)
T 2xve_A           81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVE-KAGVRKYIRFNTAVRHVEFNEDSQTF-TVTVQDH---------TTDT  149 (464)
T ss_dssp             BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHH-HHTCGGGEECSEEEEEEEEETTTTEE-EEEEEET---------TTTE
T ss_pred             cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHH-HcCCcceEEeCCEEEEEEEcCCCCcE-EEEEEEc---------CCCc
Confidence            000111100  000111244566666666554 45787  899999999988765  32 3333210         0112


Q ss_pred             ceEEEcCeEEEcCCCCCC
Q 020815          226 PNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       226 ~~~i~a~~VI~AtG~~~~  243 (321)
                      ..++.+|.||+|||+++.
T Consensus       150 ~~~~~~d~VVvAtG~~s~  167 (464)
T 2xve_A          150 IYSEEFDYVVCCTGHFST  167 (464)
T ss_dssp             EEEEEESEEEECCCSSSS
T ss_pred             eEEEEcCEEEECCCCCCC
Confidence            367899999999997654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.15  E-value=1.5e-10  Score=105.54  Aligned_cols=129  Identities=13%  Similarity=0.173  Sum_probs=77.5

Q ss_pred             ccEEEECCChHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccC------cccchh---hh-cc-------chHHHHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLG------GQLFSA---MV-VR-------KPAHIFL  150 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~liEk~~~~gg~~~~~------g~~~~~---~~-~~-------~~~~~~l  150 (321)
                      +||+|||||++|+++|+.|++   . |++|+|+||+..+||.....      +..++.   .+ ..       ....+.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~-G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   80 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG-PLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL   80 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C-CEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC-CceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence            599999999999999999999   8 99999999998877743211      000000   00 00       0112223


Q ss_pred             HHcCCCcccC---------CC---eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          151 DELGIDYDEQ---------DN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       151 ~~~g~~~~~~---------~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                      ...++.....         ..   +........+.+.|.++    .|++|+++++|++|..+++.+. |.+.+       
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~----~g~~i~~~~~V~~i~~~~~~~~-v~~~~-------  148 (342)
T 3qj4_A           81 LAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKE----SGAEVYFRHRVTQINLRDDKWE-VSKQT-------  148 (342)
T ss_dssp             HHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHH----HTCEEESSCCEEEEEECSSSEE-EEESS-------
T ss_pred             HhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHh----cCCEEEeCCEEEEEEEcCCEEE-EEECC-------
Confidence            3333321110         01   11111123344444433    3899999999999998776543 44321       


Q ss_pred             CCCCCCCceEEEcCeEEEcCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG  239 (321)
                             +.++++|.||+|+.
T Consensus       149 -------g~~~~ad~vV~A~p  162 (342)
T 3qj4_A          149 -------GSPEQFDLIVLTMP  162 (342)
T ss_dssp             -------SCCEEESEEEECSC
T ss_pred             -------CCEEEcCEEEECCC
Confidence                   24579999999998

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.13  E-value=4.2e-10  Score=99.87  Aligned_cols=111  Identities=18%  Similarity=0.183  Sum_probs=75.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.... +..+...                  .+++  ...    ....
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~-~~~~~~~------------------~~~~--~~~----~~~~   55 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA-RKNILLVDAGERR-NRFASHS------------------HGFL--GQD----GKAP   55 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCCG-GGGCSCC------------------CSST--TCT----TCCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCcc-cccchhh------------------cCCc--CCC----CCCH
Confidence            47999999999999999999999 9999999997422 1111000                  0000  000    1234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+.+..+++++.. +|+++..+++.. .+.+.              +..++.+|.||+|+|...
T Consensus        56 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~--------------~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           56 GEIIAEARRQIERYPTIHWVEG-RVTDAKGSFGEF-IVEID--------------GGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEES-CEEEEEEETTEE-EEEET--------------TSCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHHhcCCeEEEEe-EEEEEEEcCCeE-EEEEC--------------CCCEEEcCEEEECCCCCC
Confidence            5677777777765458888766 899998877642 23332              225799999999999653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.12  E-value=1.2e-10  Score=111.30  Aligned_cols=131  Identities=17%  Similarity=0.227  Sum_probs=79.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHHH---HHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~l---~~~g~~~~~~-~~~~  164 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+. ..||.|++.+|++.+.+..... .+.+   ..+|++.... .++.
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~-G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   97 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAEL-GARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR   97 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            68999999999999999999999 9999999986 7899998888887766544322 1222   2234332211 0110


Q ss_pred             E-EecH----HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          165 V-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       165 ~-~~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      . ....    ..+...+...+ +..+++++.+. +..+  +... ..+..               +..++++|+||+|||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~-~~~~--~~~~-~~v~~---------------~g~~~~~d~lviAtG  157 (478)
T 3dk9_A           98 VIKEKRDAYVSRLNAIYQNNL-TKSHIEIIRGH-AAFT--SDPK-PTIEV---------------SGKKYTAPHILIATG  157 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESC-EEEC--SCSS-CEEEE---------------TTEEEECSCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEeE-EEEe--eCCe-EEEEE---------------CCEEEEeeEEEEccC
Confidence            0 0011    11222222333 35789998874 2222  2211 11222               226799999999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      ...
T Consensus       158 ~~p  160 (478)
T 3dk9_A          158 GMP  160 (478)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.12  E-value=3.3e-10  Score=108.88  Aligned_cols=47  Identities=30%  Similarity=0.463  Sum_probs=39.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-C-CCeEEEEeccCCCCCccccCcccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-P-NIQIAIIEQSVSPGGGAWLGGQLF  137 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~-G~~V~liEk~~~~gg~~~~~g~~~  137 (321)
                      +|||+|||||++|+++|++|++. + |.+|+|||+.. +||.|.+.++.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~p   50 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVP   50 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccc
Confidence            48999999999999999999984 3 79999999987 888876655443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.11  E-value=7.5e-11  Score=112.38  Aligned_cols=135  Identities=16%  Similarity=0.217  Sum_probs=83.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHH----HHHcCCCcccC-CCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF----LDELGIDYDEQ-DNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~----l~~~g~~~~~~-~~~  163 (321)
                      +|||+|||||++|+++|+.|++. |.+|+|||+.+.+||.|+..++.+.+.+.... ..+.    +..+|+++... .++
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~-g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   84 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            58999999999999999999999 99999999998899998877777665443321 1112    33455542210 000


Q ss_pred             EE-EecHHH----HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          164 VV-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       164 ~~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      .. ......    +...+.+.+. +.+++++.++.+.   .+.+.+   .+..          .+|+..++++|.||+||
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~-~~gv~~~~g~~~~---~~~~~~---~v~~----------~~G~~~~i~~d~lIiAt  147 (470)
T 1dxl_A           85 AAMMGQKDKAVSNLTRGIEGLFK-KNKVTYVKGYGKF---VSPSEI---SVDT----------IEGENTVVKGKHIIIAT  147 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTCEEEESCEEE---EETTEE---EECC----------SSSCCEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEeEEEE---ecCCEE---EEEe----------CCCceEEEEcCEEEECC
Confidence            00 000111    2222233333 5689999997543   344432   2211          11122679999999999


Q ss_pred             CCCC
Q 020815          239 GHDG  242 (321)
Q Consensus       239 G~~~  242 (321)
                      |..+
T Consensus       148 Gs~p  151 (470)
T 1dxl_A          148 GSDV  151 (470)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.10  E-value=1.3e-10  Score=105.17  Aligned_cols=113  Identities=15%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEec----cCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ----SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVV  165 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk----~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  165 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+    ....||.........                ..     ..+..
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~~~~~~~~~----------------~~-----~~~~~   65 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMANDIAPGGQLTTTTDVE----------------NF-----PGFPE   65 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSBTTBCTTCGGGGCSEEC----------------CS-----TTCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCccccCCCceeeeccccc----------------cC-----CCCcc
Confidence            58999999999999999999999 999999999    334444322111000                00     00000


Q ss_pred             EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          166 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ......+...+.+.+. +.+++++.++ ++++..+++.+. |.+ +              ..++++|+||+|+|..+
T Consensus        66 ~~~~~~~~~~l~~~~~-~~gv~~~~~~-v~~i~~~~~~~~-v~~-~--------------~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           66 GILGVELTDKFRKQSE-RFGTTIFTET-VTKVDFSSKPFK-LFT-D--------------SKAILADAVILAIGAVA  124 (333)
T ss_dssp             CEEHHHHHHHHHHHHH-HTTCEEECCC-CCEEECSSSSEE-EEC-S--------------SEEEEEEEEEECCCEEE
T ss_pred             CCCHHHHHHHHHHHHH-HCCCEEEEeE-EEEEEEcCCEEE-EEE-C--------------CcEEEcCEEEECCCCCc
Confidence            1234566677766665 5789999986 888876555322 222 1              26799999999999654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.10  E-value=2.4e-10  Score=104.98  Aligned_cols=130  Identities=14%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-ccc--CCCe--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-YDE--QDNY--  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-~~~--~~~~--  163 (321)
                      ++||+|||||++|+++|+.|++. |. +|+|||+.. +||.+....... ... ....  ....+|+. +..  ....  
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~-g~~~v~lie~~~-~Gg~~~~~~~~~-~~~-~~~~--~~~~~g~~~~~~~~~~~~~~   77 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGT-VGHSFKHWPKST-RTI-TPSF--TSNGFGMPDMNAISMDTSPA   77 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSS-TTHHHHTSCTTC-BCS-SCCC--CCGGGTCCCTTCSSTTCCHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHc-CCCcEEEEecCC-CCCccccCcccc-ccc-Ccch--hcccCCchhhhhcccccccc
Confidence            58999999999999999999999 99 999999987 666432211000 000 0000  00011220 000  0000  


Q ss_pred             ----EEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          164 ----VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       164 ----~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                          ........+...+.+.+. +.|++++.+++|+++..+++.+ .|.+.              + .++.+|+||+|+|
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~--------------~-g~~~~d~vVlAtG  140 (369)
T 3d1c_A           78 FTFNEEHISGETYAEYLQVVAN-HYELNIFENTVVTNISADDAYY-TIATT--------------T-ETYHADYIFVATG  140 (369)
T ss_dssp             HHHCCSSCBHHHHHHHHHHHHH-HTTCEEECSCCEEEEEECSSSE-EEEES--------------S-CCEEEEEEEECCC
T ss_pred             ccccccCCCHHHHHHHHHHHHH-HcCCeEEeCCEEEEEEECCCeE-EEEeC--------------C-CEEEeCEEEECCC
Confidence                001133455555555554 5799999999999998765432 23331              1 2588999999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      ...
T Consensus       141 ~~~  143 (369)
T 3d1c_A          141 DYN  143 (369)
T ss_dssp             STT
T ss_pred             CCC
Confidence            865

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.09  E-value=1.7e-10  Score=110.27  Aligned_cols=131  Identities=19%  Similarity=0.255  Sum_probs=81.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHH----HHcCCCcccCCCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFL----DELGIDYDEQDNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l----~~~g~~~~~~~~~~  164 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+.+.+||.|...++++.+.+.... ..+.+    ..+|+++.  ... 
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~--~~~-   80 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVN--GDI-   80 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEEC--SCE-
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCC-
Confidence            58999999999999999999999 99999999988899988777776655443321 12222    22343321  011 


Q ss_pred             EEecHHH-----------HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceE-----
Q 020815          165 VIKHAAL-----------FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV-----  228 (321)
Q Consensus       165 ~~~~~~~-----------~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~-----  228 (321)
                      .. +...           +...+.+.+. +.|++++.++.+.   .+++.+ .|.+.            ++...+     
T Consensus        81 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~gv~~~~g~~~~---~~~~~v-~V~~~------------~G~~~~~~~~~  142 (478)
T 1v59_A           81 KI-NVANFQKAKDDAVKQLTGGIELLFK-KNKVTYYKGNGSF---EDETKI-RVTPV------------DGLEGTVKEDH  142 (478)
T ss_dssp             EE-CHHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEESEEEE---SSSSEE-EEECC------------TTCTTCCSSCE
T ss_pred             cc-CHHHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEEEEEE---ccCCeE-EEEec------------CCCcccccccc
Confidence            11 1111           1122333343 5799999997654   133332 22221            111134     


Q ss_pred             -EEcCeEEEcCCCCC
Q 020815          229 -MEAKVVVSSCGHDG  242 (321)
Q Consensus       229 -i~a~~VI~AtG~~~  242 (321)
                       +++|+||+|||...
T Consensus       143 ~i~~d~lViAtGs~p  157 (478)
T 1v59_A          143 ILDVKNIIVATGSEV  157 (478)
T ss_dssp             EEEEEEEEECCCEEE
T ss_pred             eEEeCEEEECcCCCC
Confidence             99999999999654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.09  E-value=3.4e-10  Score=101.37  Aligned_cols=111  Identities=20%  Similarity=0.277  Sum_probs=75.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEE-EeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAI-IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~l-iEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .+||+|||||++|+++|+.|++. |.+|+| +|+ ..+||.+........                     ...+.....
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~li~e~-~~~gG~~~~~~~~~~---------------------~~~~~~~~~   60 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRG-GLKNVVMFEK-GMPGGQITSSSEIEN---------------------YPGVAQVMD   60 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-TCSCEEEECS-SSTTGGGGGCSCBCC---------------------STTCCSCBC
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCCeEEEEeC-CCCCceeeeeceecc---------------------CCCCCCCCC
Confidence            58999999999999999999999 999999 999 566665432211100                     001110123


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..++...+.+.+. +.+++++.+ +|+++ .++  +.+. +....             +. ++.+|+||+|+|..
T Consensus        61 ~~~~~~~~~~~~~-~~~v~~~~~-~v~~i-~~~~~~~~~-v~~~~-------------~~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           61 GISFMAPWSEQCM-RFGLKHEMV-GVEQI-LKNSDGSFT-IKLEG-------------GK-TELAKAVIVCTGSA  117 (315)
T ss_dssp             HHHHHHHHHHHHT-TTCCEEECC-CEEEE-EECTTSCEE-EEETT-------------SC-EEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHH-HcCcEEEEE-EEEEE-ecCCCCcEE-EEEec-------------CC-EEEeCEEEEeeCCC
Confidence            4566677666665 689999998 88888 665  4332 11211             22 89999999999963

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.08  E-value=6.4e-10  Score=99.61  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=75.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      +|||+|||||++|+++|+.|++. |.+|+|||+.  .||.+........                  +... .   ....
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~li~~~--~gG~~~~~~~~~~------------------~~~~-~---~~~~   55 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER--FGGQILDTVDIEN------------------YISV-P---KTEG   55 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS--TTGGGGGCCEECC------------------BTTB-S---SEEH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCC--CCceecccccccc------------------ccCc-C---CCCH
Confidence            37999999999999999999999 9999999864  5554332111100                  0000 0   1133


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++.+++|+.+..++  +....+.+.              ++.++.+|+||+|+|...
T Consensus        56 ~~~~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~--------------~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           56 QKLAGALKVHVD-EYDVDVIDSQSASKLIPAAVEGGLHQIETA--------------SGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHHHHHHH-TSCEEEECSCCEEEEECCSSTTCCEEEEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCeEEccCEEEEEEecccCCceEEEEEC--------------CCCEEEeCEEEECcCCCc
Confidence            556666666665 6799999999999886542  122233332              125789999999999643

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.08  E-value=1.6e-10  Score=110.27  Aligned_cols=135  Identities=21%  Similarity=0.303  Sum_probs=75.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC------CCCccccCcccchhhhccch-HHHH----HHHcCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS------PGGGAWLGGQLFSAMVVRKP-AHIF----LDELGIDYD  158 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~------~gg~~~~~g~~~~~~~~~~~-~~~~----l~~~g~~~~  158 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||++..      .||.|.+.+|.+.+.+.... ....    +..+|+.+.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            69999999999999999999999 999999999874      44444444555544443321 1111    233443321


Q ss_pred             cC-CCeEE-EecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCe
Q 020815          159 EQ-DNYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (321)
Q Consensus       159 ~~-~~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~  233 (321)
                      .. .++.. ......+...+   ++...++.+++++.+..+.   .+.+.+ .|..            .+++..++.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~-~v~~------------~~g~~~~~~~d~  145 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL---LAGKKV-EVTA------------ADGSSQVLDTEN  145 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE---CSTTCE-EEEC------------TTSCEEEECCSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEE-EEEc------------CCCceEEEEcCE
Confidence            10 00000 00111111111   2223335689998884332   233322 1221            112336799999


Q ss_pred             EEEcCCCC
Q 020815          234 VVSSCGHD  241 (321)
Q Consensus       234 VI~AtG~~  241 (321)
                      ||+|||..
T Consensus       146 lvlAtG~~  153 (476)
T 3lad_A          146 VILASGSK  153 (476)
T ss_dssp             EEECCCEE
T ss_pred             EEEcCCCC
Confidence            99999964

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.08  E-value=7e-10  Score=105.30  Aligned_cols=132  Identities=22%  Similarity=0.289  Sum_probs=80.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHH---HHHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~~~~~~-~~~~  164 (321)
                      +|||+|||||++|+++|++|++. |.+|+|||+. ..||.|...++++.+.+.... ..+   ++..+|+++... .++.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA   80 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            58999999999999999999999 9999999998 788888777776655443321 112   222334432110 0000


Q ss_pred             E-EecHHH----HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCc-eEEEcCeEEEcC
Q 020815          165 V-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDP-NVMEAKVVVSSC  238 (321)
Q Consensus       165 ~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~-~~i~a~~VI~At  238 (321)
                      . ..+...    +...+.+.+ ++.|++++.++.+.   .+++.+ .|...              ++ .++++|+||+||
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~~---id~~~v-~V~~~--------------~G~~~i~~d~lViAT  141 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLL-KGNKVEIVKGEAYF---VDANTV-RVVNG--------------DSAQTYTFKNAIIAT  141 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTTCEEEESEEEE---EETTEE-EEEET--------------TEEEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEEEEE---ccCCeE-EEEeC--------------CCcEEEEeCEEEEec
Confidence            0 000111    222333334 36799999986543   355532 22221              12 578999999999


Q ss_pred             CCCC
Q 020815          239 GHDG  242 (321)
Q Consensus       239 G~~~  242 (321)
                      |...
T Consensus       142 Gs~p  145 (455)
T 1ebd_A          142 GSRP  145 (455)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.08  E-value=3e-10  Score=108.14  Aligned_cols=129  Identities=16%  Similarity=0.238  Sum_probs=79.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HH---HHHHHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AH---IFLDELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~---~~l~~~g~~~~~~-~~~~  164 (321)
                      ++||+|||||++|+++|..|++. |.+|+|||+.. .||.|.+.++++.+.+.... ..   +.+..+|++ ... .++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~-g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~-~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL-GLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK-AKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE-CCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC-CCCCcCHH
Confidence            58999999999999999999999 99999999986 88888877777765544321 11   222334443 100 0000


Q ss_pred             -EEecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          165 -VIKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       165 -~~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                       +......+.+.+   +....++.|++++.++.+.   .+...   +.+.               +.++++|+||+|||.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~---v~v~---------------g~~~~~d~lViATGs  141 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL---VGPKE---VEVG---------------GERYGAKSLILATGS  141 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE---EETTE---EEET---------------TEEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE---ccCCE---EEEc---------------cEEEEeCEEEEcCCC
Confidence             000111122222   1222335799999886442   24442   2221               157899999999996


Q ss_pred             CC
Q 020815          241 DG  242 (321)
Q Consensus       241 ~~  242 (321)
                      ..
T Consensus       142 ~p  143 (464)
T 2eq6_A          142 EP  143 (464)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.08  E-value=9.5e-11  Score=113.20  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=44.1

Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +...+....|++++.++.|.+++.++++++||.....           +...++.|+.||+|.|+.+
T Consensus       216 ~~~~~~~r~nl~v~~~~~v~~i~~~~~~a~gv~~~~~-----------~~~~~~~a~~VILsAGai~  271 (526)
T 3t37_A          216 LTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEVVGR-----------QGSAEVFADQIVLCAGALE  271 (526)
T ss_dssp             SCHHHHTCTTEEEECSCEEEEEEEETTEEEEEEEEET-----------TEEEEEEEEEEEECSHHHH
T ss_pred             ccccccCCCCeEEEeCCEEEEEEecCCeEEEEEEEec-----------CceEEEeecceEEcccccC
Confidence            3344445789999999999999999999999987531           1236788999999999654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.08  E-value=7.1e-11  Score=112.56  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=82.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHH----HHHcCCCcccCC--C
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF----LDELGIDYDEQD--N  162 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~----l~~~g~~~~~~~--~  162 (321)
                      +|||+|||||++|+++|++|++. |++|+|||+.+.+||.|.+.++++.+.+.... ..+.    +..+|+++....  +
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL-GMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMD   80 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            58999999999999999999999 99999999998899988877777665443321 1122    344565531110  0


Q ss_pred             eEE-EecHHH----HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          163 YVV-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       163 ~~~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      +.. ......    +...+.+.+ ++.|++++.++.+ .  .+.+.+. |...            +|+..++.+|++|+|
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~g~~~-~--i~~~~~~-v~~~------------~G~~~~~~~d~lviA  143 (468)
T 2qae_A           81 SAKMQQQKERAVKGLTGGVEYLF-KKNKVTYYKGEGS-F--ETAHSIR-VNGL------------DGKQEMLETKKTIIA  143 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHTCEEEEEEEE-E--EETTEEE-EEET------------TSCEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEEEE-E--eeCCEEE-EEec------------CCceEEEEcCEEEEC
Confidence            000 000111    112222333 3568999988643 2  3444322 2221            112267999999999


Q ss_pred             CCCC
Q 020815          238 CGHD  241 (321)
Q Consensus       238 tG~~  241 (321)
                      ||..
T Consensus       144 tG~~  147 (468)
T 2qae_A          144 TGSE  147 (468)
T ss_dssp             CCEE
T ss_pred             CCCC
Confidence            9964

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.07  E-value=4.6e-10  Score=100.94  Aligned_cols=112  Identities=12%  Similarity=0.158  Sum_probs=74.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+. .+||.+........                .     ..+......
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~~----------------~-----~~~~~~~~~   61 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM-EKGGQLTTTTEVEN----------------W-----PGDPNDLTG   61 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCS-STTGGGGGCSBCCC----------------S-----TTCCSSCBH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEccC-CCCceEecchhhhh----------------C-----CCCCCCCCH
Confidence            58999999999999999999999 9999999975 56665432111000                0     001001133


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++.++ ++.+..+++.+..  ..              +..++.+|+||+|+|...
T Consensus        62 ~~~~~~~~~~~~-~~~~~~~~~~-v~~i~~~~~~~~v--~~--------------~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           62 PLLMERMHEHAT-KFETEIIFDH-INKVDLQNRPFRL--NG--------------DNGEYTCDALIIATGASA  116 (320)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECCC-EEEEECSSSSEEE--EE--------------SSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HCCCEEEEee-eeEEEecCCEEEE--Ee--------------CCCEEEcCEEEECCCCCc
Confidence            456666665554 5789999985 8887665554322  21              125789999999999754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.06  E-value=7.5e-11  Score=112.60  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=81.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-H---HH--HHHHcCCCcccCCCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-A---HI--FLDELGIDYDEQDNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~---~~--~l~~~g~~~~~~~~~  163 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+.+.+||.|...++.+.+.+.... .   ..  .+..+|++..   ..
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~---~~   81 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQL-GFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS---EV   81 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES---CE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC---CC
Confidence            58999999999999999999999 99999999998899988777777765544321 1   11  3334555321   11


Q ss_pred             EEEecH------HHHH----HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCe
Q 020815          164 VVIKHA------ALFT----STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (321)
Q Consensus       164 ~~~~~~------~~~~----~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~  233 (321)
                       .....      ..+.    ..+.+.+ ++.+++++.++.+ .  .+.+.+. |.+.            ++...++++|+
T Consensus        82 -~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~-~--~~~~~~~-v~~~------------~gg~~~~~~d~  143 (474)
T 1zmd_A           82 -RLNLDKMMEQKSTAVKALTGGIAHLF-KQNKVVHVNGYGK-I--TGKNQVT-ATKA------------DGGTQVIDTKN  143 (474)
T ss_dssp             -EECHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESEEE-E--EETTEEE-EECT------------TSCEEEEEEEE
T ss_pred             -ccCHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEEEE-E--ecCCEEE-EEec------------CCCcEEEEeCE
Confidence             11111      1111    1223333 3579999988542 2  2444322 2211            00125799999


Q ss_pred             EEEcCCCCC
Q 020815          234 VVSSCGHDG  242 (321)
Q Consensus       234 VI~AtG~~~  242 (321)
                      ||+|||...
T Consensus       144 lViAtGs~p  152 (474)
T 1zmd_A          144 ILIATGSEV  152 (474)
T ss_dssp             EEECCCEEE
T ss_pred             EEECCCCCC
Confidence            999999643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.06  E-value=2.5e-10  Score=108.52  Aligned_cols=130  Identities=17%  Similarity=0.265  Sum_probs=81.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHHHH------cCCCcccC-C
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDE------LGIDYDEQ-D  161 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l~~------~g~~~~~~-~  161 (321)
                      +|||+|||||++|+++|+.|++. |.+|+|||+ ...||.|++.++++.+.+.... ..+.+.+      +|+++... .
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL   82 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH-TCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCcc
Confidence            58999999999999999999999 999999999 6789998877777765544321 2222222      45543211 0


Q ss_pred             CeEE-EecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          162 NYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       162 ~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      ++.. ......+...+   .+...++.|++++.++.+.   .++..   |.+.              + .++.+|++|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~~~---v~v~--------------~-~~~~~d~lviA  141 (458)
T 1lvl_A           83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV---LDGKQ---VEVD--------------G-QRIQCEHLLLA  141 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE---EETTE---EEET--------------T-EEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE---ccCCE---EEEe--------------e-EEEEeCEEEEe
Confidence            1100 00111111111   1223346799999986543   24442   2221              1 57899999999


Q ss_pred             CCCCC
Q 020815          238 CGHDG  242 (321)
Q Consensus       238 tG~~~  242 (321)
                      ||...
T Consensus       142 TGs~p  146 (458)
T 1lvl_A          142 TGSSS  146 (458)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.06  E-value=3.1e-10  Score=103.15  Aligned_cols=112  Identities=21%  Similarity=0.256  Sum_probs=73.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+. .+||.+.......     .           .+     .+......
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~-----~-----------~~-----~~~~~~~~   70 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARA-QLAPLVFEGT-SFGGALMTTTDVE-----N-----------YP-----GFRNGITG   70 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHT-TCCCEEECCS-SCSCGGGSCSCBC-----C-----------ST-----TCTTCBCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCceeccchhh-----h-----------cC-----CCCCCCCH
Confidence            68999999999999999999999 9999999986 5565432211100     0           00     00001123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEE-EEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGV-VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv-~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++.++ ++++.. ++.+ .+ .+.              +..++.+|+||+|+|...
T Consensus        71 ~~~~~~l~~~~~-~~~v~~~~~~-v~~i~~-~~~~-~v~~~~--------------~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           71 PELMDEMREQAL-RFGADLRMED-VESVSL-HGPL-KSVVTA--------------DGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECCC-EEEEEC-SSSS-EEEEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEEee-EEEEEe-CCcE-EEEEeC--------------CCCEEEeCEEEECCCCCc
Confidence            456666666665 5799999986 877765 3221 12 221              125799999999999754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.06  E-value=1.2e-09  Score=103.63  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=38.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .++||||||+|++||++|+.|++. |++|+|+|+++.+||.+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~   50 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEA   50 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCccc
Confidence            368999999999999999999999 99999999999998864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.05  E-value=2.2e-10  Score=109.98  Aligned_cols=40  Identities=38%  Similarity=0.659  Sum_probs=37.6

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~  130 (321)
                      ++||||||||++||+||++|++ . |.+|+|+|+++.+||.+
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~-G~~V~VlE~~~~~GG~~   50 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQID-GPSWMIVDSNETPGGLA   50 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHC-CSCEEEEESSSSCCGGG
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhC-CCCEEEEECCCCCcCCe
Confidence            6899999999999999999997 6 99999999999999865

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.04  E-value=1.7e-10  Score=110.94  Aligned_cols=51  Identities=27%  Similarity=0.485  Sum_probs=44.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV  142 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~  142 (321)
                      +|||+|||||++|+++|+.|++. |.+|+|||++ ..||.|.+.++++.+.+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~c~~~gc~P~k~l~   52 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKS-RLGGTCVNVGCVPKKIMF   52 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-STTHHHHHTSHHHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC-CcCccccccCCcchHHHH
Confidence            58999999999999999999999 9999999998 588888877887765543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.03  E-value=1.2e-09  Score=103.89  Aligned_cols=52  Identities=27%  Similarity=0.465  Sum_probs=45.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~  143 (321)
                      ++||+|||||++|+++|++|++. |.+|+|||++ .+||.|.+.|+++.+.+..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~-~~GG~~~~~g~ip~k~l~~   55 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG-TIGGTCVNVGCVPSKIMIR   55 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS-STTHHHHHHSHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC-CCCccccCCCccchHHHHH
Confidence            58999999999999999999999 9999999998 6899888888877665544

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.03  E-value=6.8e-10  Score=105.66  Aligned_cols=40  Identities=35%  Similarity=0.600  Sum_probs=37.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccCCCCCccc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAW  131 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~~~gg~~~  131 (321)
                      +||+|||||++||++|++|++. |.  +|+|+|+++.+||.+.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~~GG~~~   44 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRA-PCPPKVVLVESSERLGGWIR   44 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTS-SSCCEEEEECSSSSSBTTCC
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCCCCCceE
Confidence            6999999999999999999999 99  9999999988888663

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.01  E-value=1.7e-10  Score=110.61  Aligned_cols=54  Identities=28%  Similarity=0.472  Sum_probs=46.7

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCCCeEEEEe--------ccCCCCCccccCcccchhhhccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIE--------QSVSPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liE--------k~~~~gg~~~~~g~~~~~~~~~~  144 (321)
                      +|||+|||||++|+++|++|++ . |++|+|||        +...+||.|.+.+|++.+.+...
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~   65 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLH-KKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTG   65 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHHc-CCEEEEEecccccccccCCCcCccccCCCcchhhHHHHH
Confidence            5899999999999999999999 9 99999999        35578999888888877665543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.01  E-value=1.7e-10  Score=110.27  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=45.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~  143 (321)
                      +|||+|||||++|+++|+.|++. |.+|+|||++ ..||.|.+.+|++.+.+..
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~~~n~gciP~k~l~~   62 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASY-GAKTLLVEAK-ALGGTCVNVGCVPKKVMWY   62 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-SCCEEEEESS-CTTHHHHHHSHHHHHHHHH
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHC-CCcEEEEeCC-CcCCcCcccCcHHHHHHHH
Confidence            68999999999999999999999 9999999997 6888887777777665543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.01  E-value=9.2e-10  Score=104.72  Aligned_cols=129  Identities=17%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc-hHHHHHH----HcCCCcccCCCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK-PAHIFLD----ELGIDYDEQDNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~-~~~~~l~----~~g~~~~~~~~~~  164 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||+. ..||.|...++++.+.+... ...+.+.    .+|++ .   .. 
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~-G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~---~~-   75 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL-GLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-G---EV-   75 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-E---CC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-C---CC-
Confidence            48999999999999999999999 9999999998 67887766666655443332 1112222    22332 0   00 


Q ss_pred             EEecH----------HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815          165 VIKHA----------ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (321)
Q Consensus       165 ~~~~~----------~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V  234 (321)
                      .....          ..+...+.+.+. +.|++++.++.+.   .+++.+ .+.+.            +++..++++|+|
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~gv~~~~g~~~~---id~~~v-~V~~~------------~G~~~~~~~d~l  138 (464)
T 2a8x_A           76 TFDYGIAYDRSRKVAEGRVAGVHFLMK-KNKITEIHGYGTF---ADANTL-LVDLN------------DGGTESVTFDNA  138 (464)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEECEEEEE---SSSSEE-EEEET------------TSCCEEEEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEeEEEE---ecCCeE-EEEeC------------CCceEEEEcCEE
Confidence            01100          112233344444 5799999886543   244432 22221            112267999999


Q ss_pred             EEcCCCCC
Q 020815          235 VSSCGHDG  242 (321)
Q Consensus       235 I~AtG~~~  242 (321)
                      |+|||..+
T Consensus       139 ViAtG~~~  146 (464)
T 2a8x_A          139 IIATGSST  146 (464)
T ss_dssp             EECCCEEE
T ss_pred             EECCCCCC
Confidence            99999654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.00  E-value=1.8e-09  Score=102.51  Aligned_cols=40  Identities=23%  Similarity=0.333  Sum_probs=37.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|||+|||+|++|+++|+.|++. |++|++||+++..||.+
T Consensus        20 ~~dv~iiG~G~~g~~~a~~l~~~-g~~v~~~e~~~~~Gg~~   59 (475)
T 3p1w_A           20 HYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGET   59 (475)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeccCCCCCCc
Confidence            69999999999999999999999 99999999998888653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.99  E-value=5.8e-10  Score=105.83  Aligned_cols=51  Identities=24%  Similarity=0.438  Sum_probs=45.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV  142 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~  142 (321)
                      |||+|||||++|+++|+.|++. |++|+|||+.+.+||.|.+.++.+.+.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~g~~p~k~l~   52 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQL-GMKVGVVEKEKALGGTCLRVGCIPSKALL   52 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHC-CCeEEEEeCCCCCCCccceecchhHHHHH
Confidence            7999999999999999999999 99999999998899988877777665443

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.99  E-value=1.6e-09  Score=102.52  Aligned_cols=40  Identities=30%  Similarity=0.623  Sum_probs=36.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC------CeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN------IQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G------~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++||+||++|++. |      .+|+|+|+.+.+||.+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~~GG~~   50 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPRVGGKI   50 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSSSCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCCCCceE
Confidence            47999999999999999999998 8      9999999998888754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.98  E-value=2.7e-09  Score=103.11  Aligned_cols=114  Identities=17%  Similarity=0.300  Sum_probs=76.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      ..+||+|||||++|+++|++|++. |++|+|||+.  .||.+.....+.. +            .+.+         ...
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~-G~~v~lie~~--~GG~~~~~~~~~~-~------------~~~~---------~~~  265 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARK-GIRTGLMGER--FGGQVLDTVDIEN-Y------------ISVP---------KTE  265 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS--TTGGGTTCSCBCC-B------------TTBS---------SBC
T ss_pred             CcccEEEECCcHHHHHHHHHHHhC-CCeEEEEECC--CCCcccccccccc-c------------CCCC---------CCC
Confidence            468999999999999999999999 9999999973  5554331111000 0            0000         123


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ...+...+.+.+. +.|++++.+++|+.+..+.  +....|.+.              ++.++++|.||+|||...
T Consensus       266 ~~~l~~~l~~~~~-~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~--------------~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          266 GQKLAGALKAHVS-DYDVDVIDSQSASKLVPAATEGGLHQIETA--------------SGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             HHHHHHHHHHHHH-TSCEEEECSCCEEEEECCSSTTSCEEEEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHH-HcCCEEEcCCEEEEEEeccCCCceEEEEEC--------------CCCEEEcCEEEECCCCCc
Confidence            4566667666665 6799999999999986532  212233332              125799999999999643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.97  E-value=2.2e-09  Score=102.20  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHH---HHcCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFL---DELGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l---~~~g~~~~~~-~~~~  164 (321)
                      +|||+|||||++|+++|++|++. |++|+|||++ ..||.|.+.+|++.+.+.... ....+   ..+|+..... .++.
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP   81 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-CCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            58999999999999999999998 9999999998 688888877777766554322 11122   2334332210 0110


Q ss_pred             E-EecHHHHH----HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          165 V-IKHAALFT----STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       165 ~-~~~~~~~~----~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      . ......+.    ..+.+.+ ++.|++++.+. ++.+  +...+   .+ +              ..++++|++|+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~-~~~i--~~~~v---~~-~--------------g~~~~~d~lviAtG  139 (463)
T 2r9z_A           82 RLVAGRDRYIGAINSFWDGYV-ERLGITRVDGH-ARFV--DAHTI---EV-E--------------GQRLSADHIVIATG  139 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESC-EEEE--ETTEE---EE-T--------------TEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHCCCEEEEeE-EEEc--cCCEE---EE-C--------------CEEEEcCEEEECCC
Confidence            0 00111111    2222223 35799999884 3332  34332   22 1              15789999999999


Q ss_pred             CCC
Q 020815          240 HDG  242 (321)
Q Consensus       240 ~~~  242 (321)
                      ...
T Consensus       140 s~p  142 (463)
T 2r9z_A          140 GRP  142 (463)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.97  E-value=3.1e-10  Score=109.01  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=79.9

Q ss_pred             cccEEEECCChHHHHHHHHhhc-CCCCeEEEEe--------ccCCCCCccccCcccchhhhccchH----HHHHHHcCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIE--------QSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGID  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liE--------k~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~  156 (321)
                      +|||+|||||++|+++|+.|++ . |++|+|||        +...+||.|.+.+|++.+.+.....    .+....+|+.
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~   85 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLY-GKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE   85 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhc-CCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence            5899999999999999999999 9 99999999        3457888888888877765544321    1222334443


Q ss_pred             cccC---CCeEE-EecHHH----HHHHHHHHHHcCC-CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCce
Q 020815          157 YDEQ---DNYVV-IKHAAL----FTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN  227 (321)
Q Consensus       157 ~~~~---~~~~~-~~~~~~----~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~  227 (321)
                      ....   .++.. ......    +...+...+. +. +++++.++ ++.+  ++..+   .+..      ..+.......
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~~gv~~~~g~-~~~i--~~~~v---~v~~------~~~~~~~~~~  152 (495)
T 2wpf_A           86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFN-DTEGLDFFLGW-GSLE--SKNVV---VVRE------TADPKSAVKE  152 (495)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHH-HCTTEEEEESE-EEEE--ETTEE---EEES------SSSTTSCEEE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEeE-EEEe--eCCEE---EEee------cCCccCCCCe
Confidence            2110   00000 000111    1122222333 45 99999884 4433  44432   2210      0000000036


Q ss_pred             EEEcCeEEEcCCCC
Q 020815          228 VMEAKVVVSSCGHD  241 (321)
Q Consensus       228 ~i~a~~VI~AtG~~  241 (321)
                      ++.+|++|+|||..
T Consensus       153 ~~~~d~lViATGs~  166 (495)
T 2wpf_A          153 RLQADHILLATGSW  166 (495)
T ss_dssp             EEEEEEEEECCCEE
T ss_pred             EEEcCEEEEeCCCC
Confidence            79999999999964

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.96  E-value=4.2e-09  Score=100.20  Aligned_cols=45  Identities=31%  Similarity=0.480  Sum_probs=37.0

Q ss_pred             cccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           85 MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        85 ~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      |+....+||+|||||++|+++|+.|++. |.+|+|+|++..+||.+
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~-g~~v~v~E~~~~~GGr~   55 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGGAV   55 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSBTTC
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCCcee
Confidence            4444578999999999999999999999 99999999999888765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.96  E-value=1.1e-09  Score=100.60  Aligned_cols=37  Identities=30%  Similarity=0.534  Sum_probs=33.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG  127 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g  127 (321)
                      ++||+|||||++|+++|++|++. |.+|+|||+.....
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~-G~~V~vle~~~~~~   42 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPED   42 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccCCCC
Confidence            68999999999999999999999 99999999976433

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.95  E-value=4.7e-10  Score=96.87  Aligned_cols=40  Identities=30%  Similarity=0.547  Sum_probs=37.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ++||+||||||+||+||+.|++. |++|+||||.+.+||..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~-G~~V~v~Ek~~~~GG~~   41 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRGSGGRM   41 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcc
Confidence            58999999999999999999999 99999999999888754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.95  E-value=3.7e-09  Score=98.75  Aligned_cols=138  Identities=19%  Similarity=0.223  Sum_probs=95.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|.+. |.+|+++|+.+.+....                                     ...
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~~~-------------------------------------~~~  184 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAK-GLEVDVVELAPRVMARV-------------------------------------VTP  184 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCcchhhc-------------------------------------cCH
Confidence            4799999999999999999999 99999999976431100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+.+.+.+.+. +.|++++.++.++++..+++++.+|.+.+              +.++.||.||+|+|.....     .
T Consensus       185 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~~V~~~d--------------G~~i~aD~Vv~a~G~~p~~-----~  244 (404)
T 3fg2_P          185 EISSYFHDRHS-GAGIRMHYGVRATEIAAEGDRVTGVVLSD--------------GNTLPCDLVVVGVGVIPNV-----E  244 (404)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT--------------SCEEECSEEEECCCEEECC-----H
T ss_pred             HHHHHHHHHHH-hCCcEEEECCEEEEEEecCCcEEEEEeCC--------------CCEEEcCEEEECcCCccCH-----H
Confidence            34444455554 67999999999999998888888888743              2689999999999954332     2


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~  297 (321)
                      .+...++..  .  .++..+.       ..+...|++|++|+++...
T Consensus       245 l~~~~gl~~--~--~Gi~vd~-------~~~t~~~~iya~GD~a~~~  280 (404)
T 3fg2_P          245 IAAAAGLPT--A--AGIIVDQ-------QLLTSDPHISAIGDCALFE  280 (404)
T ss_dssp             HHHHTTCCB--S--SSEEECT-------TSBCSSTTEEECGGGEEEE
T ss_pred             HHHhCCCCC--C--CCEEECC-------CcccCCCCEEEeecceeec
Confidence            233334311  1  2233332       2234579999999987543

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.94  E-value=2.2e-10  Score=106.15  Aligned_cols=124  Identities=17%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCC---CCccccCcccchhhhccchHH-HH-HHH------------c
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP---GGGAWLGGQLFSAMVVRKPAH-IF-LDE------------L  153 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~---gg~~~~~g~~~~~~~~~~~~~-~~-l~~------------~  153 (321)
                      ||+|||||++|+++|+.|++. ||++|+|+|+.+.+   |.+....+..... ....... +. +..            .
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQH-PANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTC-TTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHh-hcCcchhhhhhHHHhhccccceEEEeC
Confidence            899999999999999999984 48999999998765   3221111110000 0000000 00 000            1


Q ss_pred             CCCcccC-CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815          154 GIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (321)
Q Consensus       154 g~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~  232 (321)
                      |..+... +......+...+.+.|.+.+.+ .|++++++++|+++...                          .+++||
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~--------------------------~~~~ad  133 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRS-QGIAIRFESPLLEHGEL--------------------------PLADYD  133 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHH-TTCEEETTCCCCSGGGC--------------------------CGGGCS
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHH-CCCEEEeCCEeccchhc--------------------------ccccCC
Confidence            1111111 1122355678888998888874 59999999988776310                          125789


Q ss_pred             eEEEcCCCCCC
Q 020815          233 VVVSSCGHDGP  243 (321)
Q Consensus       233 ~VI~AtG~~~~  243 (321)
                      .||+|+|..+.
T Consensus       134 ~vV~AdG~~S~  144 (381)
T 3c4a_A          134 LVVLANGVNHK  144 (381)
T ss_dssp             EEEECCGGGGG
T ss_pred             EEEECCCCCch
Confidence            99999996654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.92  E-value=1.3e-08  Score=97.29  Aligned_cols=40  Identities=28%  Similarity=0.508  Sum_probs=37.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ++||+|||||++|++||+.|++. |++|+|+|+++.+||.+
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GGr~   78 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIGGRS   78 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSBSBTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCCEEEEeCCCCCCCcc
Confidence            48999999999999999999999 99999999999888764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.91  E-value=2.9e-09  Score=104.49  Aligned_cols=136  Identities=18%  Similarity=0.246  Sum_probs=78.0

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-C-------CCCCccccCcccchhhhccch----HHHHHHHcCCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-V-------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGID  156 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~-------~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~  156 (321)
                      ..|||+|||||++|+++|..|++. |++|+|||+. +       ..||.|++.++++...+....    ....+..+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~-g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~  184 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS  184 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhC-CCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence            469999999999999999999999 9999999973 2       256666666666655443321    22345566765


Q ss_pred             cccC---CCeEEE-ecHHHHHHH----HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceE
Q 020815          157 YDEQ---DNYVVI-KHAALFTST----IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (321)
Q Consensus       157 ~~~~---~~~~~~-~~~~~~~~~----l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (321)
                      +...   .++... .....+...    +...+ +..+++++.+. +..+  +...+. +..            .+|+..+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~~-~~~~--~~~~v~-v~~------------~~g~~~~  247 (598)
T 2x8g_A          185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVAL-RDNQVTYLNAK-GRLI--SPHEVQ-ITD------------KNQKVST  247 (598)
T ss_dssp             CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEECSE-EEEE--ETTEEE-EEC------------TTCCEEE
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHH-hhCCcEEEEEE-EEEc--CCCEEE-EEe------------CCCCeEE
Confidence            4321   111000 000111111    11122 24688888763 3222  333221 111            1112257


Q ss_pred             EEcCeEEEcCCCCC
Q 020815          229 MEAKVVVSSCGHDG  242 (321)
Q Consensus       229 i~a~~VI~AtG~~~  242 (321)
                      +.+|+||+|||...
T Consensus       248 ~~~d~lviAtGs~p  261 (598)
T 2x8g_A          248 ITGNKIILATGERP  261 (598)
T ss_dssp             EEEEEEEECCCEEE
T ss_pred             EEeCEEEEeCCCCC
Confidence            89999999999643

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.91  E-value=1.7e-09  Score=105.33  Aligned_cols=37  Identities=43%  Similarity=0.693  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      +||+||||||.+|+.+|.+|++.++.+|+|||++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999999549999999997643

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.91  E-value=2.9e-10  Score=104.00  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=35.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC------CeEEEEeccCCCCCccccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN------IQIAIIEQSVSPGGGAWLG  133 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G------~~V~liEk~~~~gg~~~~~  133 (321)
                      ||+|||||++|+++|++|++. |      .+|+|||+....++.+...
T Consensus         2 dVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~~~~~aS~~~   48 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRFTPLTTTDVA   48 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSCGGGSGGGTC
T ss_pred             cEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCCCCCCccccC
Confidence            899999999999999999998 7      9999999986555544433

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.90  E-value=9.4e-09  Score=99.08  Aligned_cols=40  Identities=33%  Similarity=0.576  Sum_probs=37.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++|++||+.|++. |++|+|+|+++.+||.+
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GGr~   43 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGRT   43 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSBTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCce
Confidence            57999999999999999999999 99999999999888765

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.89  E-value=1.2e-08  Score=97.92  Aligned_cols=137  Identities=15%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCcccchhh----------h--cc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAM----------V--VR-  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-------------~G~~V~liEk~~~~gg~~~~~g~~~~~~----------~--~~-  143 (321)
                      -|||||||+|++||++|+.|.+.             ++..++.+|+.+..+   |..+.++...          .  .+ 
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~---Wh~g~~~p~~~~q~~fl~Dlvtl~~P  115 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA---WHSGMLVPGSKMQISFIKDLATLRDP  115 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC---SSGGGCCTTCBCSSCGGGSSSTTTCT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC---cCCCCCCCCccccccchhhhccccCC
Confidence            48999999999999999998753             145677888876544   4444322110          0  00 


Q ss_pred             ---chHHHHHHHcCCC--cccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-------EEEEEEEee
Q 020815          144 ---KPAHIFLDELGID--YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-------RVGGVVTNW  211 (321)
Q Consensus       144 ---~~~~~~l~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-------~v~gv~~~~  211 (321)
                         .....+|.+.+--  |.....+  .....++.++|...+. +.+..++++++|+++...+.       ...-|.+.+
T Consensus       116 ~s~~sf~~yl~~~~rl~~f~~~~~~--~p~r~E~~~Yl~~~A~-~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~  192 (501)
T 4b63_A          116 RSSFTFLNYLHQKGRLIHFTNLSTF--LPARLEFEDYMRWCAQ-QFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRN  192 (501)
T ss_dssp             TCTTSHHHHHHHHTCHHHHHTTCCS--CCBHHHHHHHHHHHHH-TTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEE
T ss_pred             CCccchHHHHHHhCCccCCccccCC--CCCHHHHHHHHHHHHH-HcCCceEcceEEEeeccccccccccccceEEEEEec
Confidence               0123455544421  1111111  1234566666554444 67788999999999987642       134444433


Q ss_pred             cceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          212 ALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       212 ~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +         .+++..++.|+.||+|+|..
T Consensus       193 ~---------~~g~~~~~~ar~vVlatG~~  213 (501)
T 4b63_A          193 V---------ETGEISARRTRKVVIAIGGT  213 (501)
T ss_dssp             T---------TTCCEEEEEEEEEEECCCCE
T ss_pred             C---------CCceEEEEEeCEEEECcCCC
Confidence            1         23356789999999999964

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.88  E-value=5.5e-09  Score=102.92  Aligned_cols=39  Identities=31%  Similarity=0.446  Sum_probs=35.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      +|||||||||++|+++|+.|++. |++|+|||+....+|.
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~-G~~V~liE~~~~~gg~   84 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGL   84 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhC-CCcEEEEeccCCCCCc
Confidence            68999999999999999999999 9999999998776653

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.84  E-value=5.9e-09  Score=99.99  Aligned_cols=111  Identities=28%  Similarity=0.351  Sum_probs=76.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|+++|++|++.  .+|+|||+++.+||..+......               +|++      .    ..
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~--~~V~vie~~~~~GG~~~~~~~~~---------------~g~~------~----~~  160 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY--LTVALIEERGWLGGDMWLKGIKQ---------------EGFN------K----DS  160 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT--CCEEEECTTSSSSCSGGGTCSEE---------------TTTT------E----EH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc--CCEEEEeCCCCCCCeeecccccc---------------CCCC------C----CH
Confidence            58999999999999999999997  99999999988877654211000               1111      0    23


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .++...+.+.+  ..+++++.++.+.++..+++.+.......            ++..++.+|++|+|||..
T Consensus       161 ~~~~~~l~~~l--~~~v~~~~~~~v~~i~~~~~~~~~~~~~~------------~~~~~~~~d~lvlAtGa~  218 (493)
T 1y56_A          161 RKVVEELVGKL--NENTKIYLETSALGVFDKGEYFLVPVVRG------------DKLIEILAKRVVLATGAI  218 (493)
T ss_dssp             HHHHHHHHHTC--CTTEEEETTEEECCCEECSSSEEEEEEET------------TEEEEEEESCEEECCCEE
T ss_pred             HHHHHHHHHHH--hcCCEEEcCCEEEEEEcCCcEEEEEEecC------------CeEEEEECCEEEECCCCC
Confidence            44445555444  56999999999988877665433222111            122478999999999964

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.83  E-value=1.7e-08  Score=104.21  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ++||||||||++|+++|+.|++. |++|+|||+.+.+||.++. .   .+....                  .    ...
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~-G~~V~lie~~~~~GG~~~~-~---~k~~i~------------------~----~~~  180 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRS-GARVMLLDERAEAGGTLLD-T---AGEQID------------------G----MDS  180 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSGGGGG-S---SCCEET------------------T----EEH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCceecc-C---CccccC------------------C----CCH
Confidence            58999999999999999999999 9999999999888876652 1   000000                  0    012


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC-CCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT-QSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~-~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .++...+.+++.+..+++++.+++|..+. .++.+..+............. ..+.+..++.+|+||+|||..
T Consensus       181 ~~~~~~~~~~l~~~~~v~~~~~~~V~~i~-~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~  252 (965)
T 2gag_A          181 SAWIEQVTSELAEAEETTHLQRTTVFGSY-DANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAH  252 (965)
T ss_dssp             HHHHHHHHHHHHHSTTEEEESSEEEEEEE-TTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHhhcCCcEEEeCCEEEeee-cCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCc
Confidence            34455566666655699999999998875 344444433211000010000 000122479999999999964

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.82  E-value=1.6e-08  Score=96.61  Aligned_cols=138  Identities=18%  Similarity=0.241  Sum_probs=89.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                           +           .
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------~  226 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVEL-GKKVRMIERNDHIGTI---------------------------Y-----------D  226 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHT-TCEEEEECCGGGTTSS---------------------------S-----------C
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCchhhc---------------------------C-----------C
Confidence            35899999999999999999999 9999999997532110                           0           0


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                      ..+.+.+.+.+. +.|++++.+++++++..+ +++..+.+.               ..++.+|.||+|+|.....     
T Consensus       227 ~~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~-~~v~~v~~~---------------~~~i~~D~vi~a~G~~p~~-----  284 (480)
T 3cgb_A          227 GDMAEYIYKEAD-KHHIEILTNENVKAFKGN-ERVEAVETD---------------KGTYKADLVLVSVGVKPNT-----  284 (480)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECSCCEEEEEES-SBEEEEEET---------------TEEEECSEEEECSCEEESC-----
T ss_pred             HHHHHHHHHHHH-HcCcEEEcCCEEEEEEcC-CcEEEEEEC---------------CCEEEcCEEEECcCCCcCh-----
Confidence            234445555554 579999999999998754 555555542               2579999999999954332     


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~  297 (321)
                      ..+...+..  +.....+.++.       +.+...|++|++|+++...
T Consensus       285 ~~l~~~g~~--~~~~G~I~Vd~-------~~~ts~p~IyA~GD~~~~~  323 (480)
T 3cgb_A          285 DFLEGTNIR--TNHKGAIEVNA-------YMQTNVQDVYAAGDCATHY  323 (480)
T ss_dssp             GGGTTSCCC--BCTTSCBCCCT-------TSBCSSTTEEECGGGBCEE
T ss_pred             HHHHhCCcc--cCCCCCEEECC-------CccCCCCCEEEeeeEEEec
Confidence            122222220  11111122222       2234579999999987543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.81  E-value=6.6e-08  Score=86.70  Aligned_cols=101  Identities=18%  Similarity=0.214  Sum_probs=76.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                        ..
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~----------------------------------------~~  184 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA----------------------------------------EK  184 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCC----------------------------------------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCcccc----------------------------------------CH
Confidence            5799999999999999999999 999999998753210                                        02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCC-CCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC-MDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~-g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+.+.+.+. +.|++++.+++++++..+++++.+|.+.+.         .+ ++..++.+|.||+|+|...
T Consensus       185 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~---------~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          185 ILIKRLMDKVE-NGNIILHTNRTLEEVTGDQMGVTGVRLRDT---------QNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             HHHHHHHHHHH-TSSEEEECSCEEEEEEECSSSEEEEEEECC---------TTCCCCEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHhcc-cCCeEEEcCceeEEEEcCCCceEEEEEEec---------cCCCceEEEEcCEEEEEeCCCC
Confidence            23344555554 689999999999999877767777776421         01 2346899999999999443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.80  E-value=3.6e-08  Score=93.24  Aligned_cols=98  Identities=27%  Similarity=0.372  Sum_probs=72.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+++|||+|++|+.+|..|++. |.+|+|+|+.+.+....                          +           .
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~~--------------------------~-----------~  190 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRPLGVY--------------------------L-----------D  190 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT--------------------------C-----------C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCccccccc--------------------------C-----------C
Confidence            46999999999999999999999 99999999976432100                          0           1


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+.+.+.+.+. +.|++++.++.++++..+ +++..+.+.               ..++.+|.||+|+|...
T Consensus       191 ~~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~-~~v~~v~~~---------------~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          191 KEFTDVLTEEME-ANNITIATGETVERYEGD-GRVQKVVTD---------------KNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHHHHHH-TTTEEEEESCCEEEEECS-SBCCEEEES---------------SCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHH-hCCCEEEcCCEEEEEEcc-CcEEEEEEC---------------CCEEECCEEEECcCCCC
Confidence            234455555565 689999999999998754 444344431               25799999999999543

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.79  E-value=8.3e-09  Score=100.18  Aligned_cols=59  Identities=27%  Similarity=0.334  Sum_probs=43.9

Q ss_pred             HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE---EcCeEEEcCCCCC
Q 020815          175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM---EAKVVVSSCGHDG  242 (321)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i---~a~~VI~AtG~~~  242 (321)
                      .+++.+.+..|++++.++.|++|+.+++++.||++..      .   .+|+..++   .+|.||+|+|+.+
T Consensus       200 ~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~------~---~~g~~~~~~v~~~~~VIlaaG~~~  261 (546)
T 1kdg_A          200 TYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTND------P---TLGPNGFIPVTPKGRVILSAGAFG  261 (546)
T ss_dssp             THHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESC------T---TSSGGGEEEEEEEEEEEECSHHHH
T ss_pred             HHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEe------c---CCCceeEEEEEeCCEEEEcCChhc
Confidence            3566666567999999999999999989999998843      0   01222233   7899999999653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.79  E-value=7.4e-09  Score=96.92  Aligned_cols=136  Identities=13%  Similarity=0.125  Sum_probs=91.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                   .                  ...
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~l~~-------------------~------------------~~~  185 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKL-GLSVTILEAGDELLVR-------------------V------------------LGR  185 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSHH-------------------H------------------HCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCccchh-------------------h------------------cCH
Confidence            5899999999999999999999 9999999997542100                   0                  002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+.+.+.+.+. +.|++++.++.++++..++ ++.+|.+.+              +.++.||.||+|+|.....     .
T Consensus       186 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~-~~~~v~~~d--------------g~~i~aD~Vv~a~G~~p~~-----~  244 (410)
T 3ef6_A          186 RIGAWLRGLLT-ELGVQVELGTGVVGFSGEG-QLEQVMASD--------------GRSFVADSALICVGAEPAD-----Q  244 (410)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEECSS-SCCEEEETT--------------SCEEECSEEEECSCEEECC-----H
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEeccC-cEEEEEECC--------------CCEEEcCEEEEeeCCeecH-----H
Confidence            33344444444 5799999999999987543 555666632              3689999999999954332     2


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+...++..  .  .++.++.       +.+...|++|++|+++..
T Consensus       245 l~~~~gl~~--~--~gi~vd~-------~~~t~~~~IyA~GD~a~~  279 (410)
T 3ef6_A          245 LARQAGLAC--D--RGVIVDH-------CGATLAKGVFAVGDVASW  279 (410)
T ss_dssp             HHHHTTCCB--S--SSEECCT-------TSBCSSTTEEECGGGEEE
T ss_pred             HHHhCCCcc--C--CeEEEcc-------CeeECCCCEEEEEcceec
Confidence            234444311  1  2233332       223467999999998754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.78  E-value=1.8e-08  Score=92.63  Aligned_cols=104  Identities=18%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh-----------cc-chHHHHHHHcCCCcc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV-----------VR-KPAHIFLDELGIDYD  158 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~-----------~~-~~~~~~l~~~g~~~~  158 (321)
                      +||+|||||++|+.+|++|++. |.+|+|||++...+......+.+. .+.           .. ....+.++.+|-..-
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~-G~~V~liE~~~~~~tp~h~~d~i~-eL~CnpSigG~~~~~akGlL~~EIdaLGg~m~   79 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL-GVPVRLFEMRPKRMTPAHGTDRFA-EIVCSNSLGGEGETNAKGLLQAEMRRAGSLVM   79 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTTSCCSSCCSSCTT-CCCSCCEEEECSTTCHHHHHHHHHHHHTCHHH
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCcEEEEeccCCcCCccccCCCcc-ccccCcCCCccccccchhHHHHHHHHcCChHh
Confidence            5999999999999999999999 999999999764332211111100 000           00 012334444433211


Q ss_pred             c-------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          159 E-------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       159 ~-------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                      .       ........+...|...+.+.+.+.++++++.+ +|++|
T Consensus        80 ~~aD~~~ipAg~al~vDR~~f~~~~~~~le~~pni~l~q~-eV~~l  124 (443)
T 3g5s_A           80 EAADLARVPAGGALAVDREEFSGYITERLTGHPLLEVVRE-EVREI  124 (443)
T ss_dssp             HHHHHSEECCTTEEEECHHHHHHHHHHHHHTCTTEEEECS-CCCSC
T ss_pred             hhhhhcCCCCCccccCCcHHHHHHHHHHHHcCCCeEEEhh-hhhhh
Confidence            0       01222345678888899999998899999865 44443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.78  E-value=7e-08  Score=86.99  Aligned_cols=99  Identities=10%  Similarity=0.138  Sum_probs=75.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-.++|||+|..|+.+|..|++. |.+|.++++...+..                                         
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~-g~~v~~v~~~~~~~~-----------------------------------------  210 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKY-GSKVFMLVRKDHLRA-----------------------------------------  210 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCccCC-----------------------------------------
Confidence            35799999999999999999999 999999998753210                                         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         ...+.+++.+..|++++.++.++++..+++++.+|.+.+.         .+++..++.+|.||+|+|...
T Consensus       211 ---~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p  271 (338)
T 3itj_A          211 ---STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNT---------KKNEETDLPVSGLFYAIGHTP  271 (338)
T ss_dssp             ---CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEET---------TTTEEEEEECSEEEECSCEEE
T ss_pred             ---CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEEC---------CCCceEEEEeCEEEEEeCCCC
Confidence               1233445544569999999999999887777777777531         112347899999999999443

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.78  E-value=4.6e-08  Score=92.94  Aligned_cols=39  Identities=31%  Similarity=0.579  Sum_probs=36.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~  129 (321)
                      .+||+|||||++|+++|++|++. |  .+|+|+|+...+||.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~~GG~   44 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGERLGGK   44 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHH-CTTSEEEEECSSSSSBTT
T ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCCCEEEEECCCCCCce
Confidence            47999999999999999999998 8  999999998888774

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.77  E-value=4.1e-08  Score=90.95  Aligned_cols=135  Identities=17%  Similarity=0.188  Sum_probs=91.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||+|..|+.+|..|++. |.+|+|+|+.+.+....                                     ...
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~~-------------------------------------~~~  187 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSG-GYQLDVVAPCEQVMPGL-------------------------------------LHP  187 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCcchhhcc-------------------------------------cCH
Confidence            5899999999999999999999 99999999975422100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+.+.+.+.+. +.|++++.+++++++..+++.+ .+.+.              ++.++.+|.||+|+|..+..     .
T Consensus       188 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~d~vv~a~G~~p~~-----~  246 (384)
T 2v3a_A          188 AAAKAVQAGLE-GLGVRFHLGPVLASLKKAGEGL-EAHLS--------------DGEVIPCDLVVSAVGLRPRT-----E  246 (384)
T ss_dssp             HHHHHHHHHHH-TTTCEEEESCCEEEEEEETTEE-EEEET--------------TSCEEEESEEEECSCEEECC-----H
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCEE-EEEEC--------------CCCEEECCEEEECcCCCcCH-----H
Confidence            34455555555 6899999999999998776643 34432              22679999999999954432     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.++..  .  .++.++.       +.+...|++|++|+++.
T Consensus       247 l~~~~g~~~--~--~gi~vd~-------~~~t~~~~IyA~GD~~~  280 (384)
T 2v3a_A          247 LAFAAGLAV--N--RGIVVDR-------SLRTSHANIYALGDCAE  280 (384)
T ss_dssp             HHHHTTCCB--S--SSEEECT-------TCBCSSTTEEECGGGEE
T ss_pred             HHHHCCCCC--C--CCEEECC-------CCCCCCCCEEEeeeeee
Confidence            233444311  1  1233332       12345789999999874

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.77  E-value=1.1e-08  Score=103.05  Aligned_cols=38  Identities=34%  Similarity=0.670  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg  128 (321)
                      .+||+|||||++|+++|+.|++. |++|+|+|+...+||
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNF-GIKVTVLEAKDRIGG  373 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEecccceec
Confidence            58999999999999999999999 999999999888877

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.76  E-value=7.6e-08  Score=90.65  Aligned_cols=137  Identities=15%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+....                                     ...
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~l~~~-------------------------------------~~~  191 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARVLERV-------------------------------------TAP  191 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCccccch-------------------------------------hhH
Confidence            4899999999999999999999 99999999975421100                                     002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEE--ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIV--KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG  248 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~--~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~  248 (321)
                      .+...+.+.+. +.|++++.++.++++..  +++++..|.+.+              +.++.+|.||+|+|.....    
T Consensus       192 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~--------------G~~i~~D~Vv~a~G~~p~~----  252 (431)
T 1q1r_A          192 PVSAFYEHLHR-EAGVDIRTGTQVCGFEMSTDQQKVTAVLCED--------------GTRLPADLVIAGIGLIPNC----  252 (431)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEECTTTCCEEEEEETT--------------SCEEECSEEEECCCEEECC----
T ss_pred             HHHHHHHHHHH-hCCeEEEeCCEEEEEEeccCCCcEEEEEeCC--------------CCEEEcCEEEECCCCCcCc----
Confidence            23344444454 57999999999999986  456776776632              2679999999999944321    


Q ss_pred             hhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          249 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       249 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                       ..+...++.  +.  .++.++.       +.+...|++|+.|+++..
T Consensus       253 -~l~~~~gl~--~~--~gi~Vd~-------~~~ts~~~IyA~GD~~~~  288 (431)
T 1q1r_A          253 -ELASAAGLQ--VD--NGIVINE-------HMQTSDPLIMAVGDCARF  288 (431)
T ss_dssp             -HHHHHTTCC--BS--SSEECCT-------TSBCSSTTEEECGGGEEE
T ss_pred             -chhhccCCC--CC--CCEEECC-------CcccCCCCEEEEEeEEEE
Confidence             223333331  11  2233332       123457899999998754

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.76  E-value=2.6e-08  Score=96.72  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcC-eEEEcCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHD  241 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~-~VI~AtG~~  241 (321)
                      ++..+.+..|++|+.++.|++|+.++ +++.||.+..      .   .+++..+++|+ .||+|+|++
T Consensus       214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~------~---~~g~~~~i~A~k~VIlaaG~~  272 (546)
T 2jbv_A          214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVD------S---AFGHTHRLTARNEVVLSTGAI  272 (546)
T ss_dssp             HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEES------S---TTSCEEEEEEEEEEEECSHHH
T ss_pred             HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEE------C---CCCcEEEEEeCccEEEecCcc
Confidence            34444446799999999999999987 8899998742      1   01244689998 999999964

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.75  E-value=4.6e-09  Score=98.96  Aligned_cols=34  Identities=24%  Similarity=0.484  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~-G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQH-DVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHT-TCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence            57999999999999999999999 99999999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.74  E-value=5.4e-09  Score=104.35  Aligned_cols=41  Identities=34%  Similarity=0.518  Sum_probs=37.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+....||.++
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~-G~~V~liE~~~~~GG~~~  431 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVR-GYDVVLAEAGRDLGGRVT  431 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSCTHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCEee
Confidence            58999999999999999999999 999999999988887654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.74  E-value=2.3e-08  Score=95.22  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .||+|||||++|+++|+.|++. +|.+|+|||+.+..+-   ....+..          ++   +-.+.....+..  ..
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~---~~~gl~~----------~~---~g~~~~~~~~~~--~~   65 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISY---GGCGIPY----------YV---SGEVSNIESLQA--TP   65 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccc---cccccch----------hh---cCCCCchHHhcc--cc
Confidence            5999999999999999999983 4799999999876431   1100000          00   000000000000  00


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..+. ...+.+.+..+++++.+++|+++..+++.+. +...           .+++..++.+|.+|+|||..
T Consensus        66 ~~~~-~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~-~~~~-----------~~g~~~~~~~d~lviAtG~~  124 (472)
T 3iwa_A           66 YNVV-RDPEFFRINKDVEALVETRAHAIDRAAHTVE-IENL-----------RTGERRTLKYDKLVLALGSK  124 (472)
T ss_dssp             ----------------CEEECSEEEEEEETTTTEEE-EEET-----------TTCCEEEEECSEEEECCCEE
T ss_pred             chhc-cCHHHHhhhcCcEEEECCEEEEEECCCCEEE-Eeec-----------CCCCEEEEECCEEEEeCCCC
Confidence            0011 1123333357899999999999876666432 1110           01233589999999999963

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.73  E-value=1.1e-07  Score=90.06  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+|+|+.+.+-...                          +           ..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~--------------------------~-----------~~  191 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQ-NYNVNLIDGHERVLYKY--------------------------F-----------DK  191 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSTTTTT--------------------------S-----------CH
T ss_pred             CeEEEECcCHHHHHHHHHHHhc-CCEEEEEEcCCchhhhh--------------------------h-----------hh
Confidence            4799999999999999999999 99999999975321100                          0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+.+.+.+.+. +.|++++.+++|+++..+++++..+..               ++.++.+|.||+|+|....
T Consensus       192 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~v~~v~~---------------~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          192 EFTDILAKDYE-AHGVNLVLGSKVAAFEEVDDEIITKTL---------------DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESSCEEEEEEETTEEEEEET---------------TSCEEEESEEEECCCEEEC
T ss_pred             hHHHHHHHHHH-HCCCEEEcCCeeEEEEcCCCeEEEEEe---------------CCCEEECCEEEECcCCCCC
Confidence            34445555554 679999999999999876776655543               1267999999999995443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.73  E-value=1.8e-08  Score=95.29  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .+||+|||||++|+++|+.|++. ++.+|+|||+.+..+....   .++.          ++...             ..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~---~~p~----------~~~~~-------------~~   56 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC---GIPY----------VVEGL-------------ST   56 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc---CCcc----------ccCCC-------------CC
Confidence            37999999999999999999984 3789999999875432110   0000          00000             00


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ...+.....+.+.++.+++++.+++|+.+..++.   .+.+..             ...++.+|.||+|||..
T Consensus        57 ~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~---~v~~~~-------------g~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           57 PDKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYV---RVRENG-------------GEKSYEWDYLVFANGAS  113 (449)
T ss_dssp             ---------CTHHHHTTCEEETTCEEEEECSSEE---EEECSS-------------SEEEEECSEEEECCCEE
T ss_pred             HHHhhhcCHHHHHHhcCcEEEecCEEEEEecCCC---EEEECC-------------ceEEEEcCEEEECCCCC
Confidence            1111222223332357999999999988743221   122210             12579999999999954

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.72  E-value=4e-08  Score=91.85  Aligned_cols=133  Identities=17%  Similarity=0.215  Sum_probs=88.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+....                                     ...
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  187 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRLMSRA-------------------------------------APA  187 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCcccccc-------------------------------------cCH
Confidence            5899999999999999999999 99999999986431100                                     002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.+++++++.  ++   .|.+.              ++.++.+|.||+|+|.....     .
T Consensus       188 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~--~~---~v~~~--------------~g~~i~~D~vi~a~G~~p~~-----~  242 (408)
T 2gqw_A          188 TLADFVARYHA-AQGVDLRFERSVTGSV--DG---VVLLD--------------DGTRIAADMVVVGIGVLAND-----A  242 (408)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESCCEEEEE--TT---EEEET--------------TSCEEECSEEEECSCEEECC-----H
T ss_pred             HHHHHHHHHHH-HcCcEEEeCCEEEEEE--CC---EEEEC--------------CCCEEEcCEEEECcCCCccH-----H
Confidence            23344455554 6799999999999987  44   34442              22679999999999954332     2


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~  297 (321)
                      .+.+.++.  ..  .++.++.       +.+...|++|+.|+++...
T Consensus       243 l~~~~gl~--~~--~gi~Vd~-------~~~t~~~~IyA~GD~~~~~  278 (408)
T 2gqw_A          243 LARAAGLA--CD--DGIFVDA-------YGRTTCPDVYALGDVTRQR  278 (408)
T ss_dssp             HHHHHTCC--BS--SSEECCT-------TCBCSSTTEEECGGGEEEE
T ss_pred             HHHhCCCC--CC--CCEEECC-------CCccCCCCEEEEEEEEEec
Confidence            23333331  11  2233332       1234579999999987543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.71  E-value=1.4e-07  Score=86.17  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=91.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. +.+|+++++.+.+...                                        .
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~~~~----------------------------------------~  202 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKN-AASVTLVHRGHEFQGH----------------------------------------G  202 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSSSCSSC----------------------------------------S
T ss_pred             CcEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCCCCCC----------------------------------------H
Confidence            4799999999999999999999 9999999987532110                                        0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+... +.|++++.+++++++..+++++.+|.+..          .+|+..++.+|.||+|+|......     
T Consensus       203 ~~~~~l~~~~~-~~gv~i~~~~~v~~i~~~~~~v~~v~~~~----------~~g~~~~i~~D~vi~a~G~~p~~~-----  266 (360)
T 3ab1_A          203 KTAHEVERARA-NGTIDVYLETEVASIEESNGVLTRVHLRS----------SDGSKWTVEADRLLILIGFKSNLG-----  266 (360)
T ss_dssp             HHHHSSHHHHH-HTSEEEESSEEEEEEEEETTEEEEEEEEE----------TTCCEEEEECSEEEECCCBCCSCG-----
T ss_pred             HHHHHHHHHhh-cCceEEEcCcCHHHhccCCCceEEEEEEe----------cCCCeEEEeCCEEEECCCCCCCHH-----
Confidence            11222333333 56999999999999998888877777631          122346899999999999544321     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+...+..  +. ...+.++.       ..+...|++|++|+++.
T Consensus       267 ~l~~~~~~--~~-~g~i~vd~-------~~~t~~~~vya~GD~~~  301 (360)
T 3ab1_A          267 PLARWDLE--LY-ENALVVDS-------HMKTSVDGLYAAGDIAY  301 (360)
T ss_dssp             GGGGSSCC--EE-TTEEECCT-------TSBCSSTTEEECSTTEE
T ss_pred             HHHhhccc--cc-cCeeeecC-------CCcCCCCCEEEecCccC
Confidence            12222221  11 12222222       12345799999999874

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.71  E-value=1.7e-07  Score=88.84  Aligned_cols=100  Identities=17%  Similarity=0.264  Sum_probs=72.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------~~  211 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAGEILSG---------------------------F-----------EK  211 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT---------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCccccc---------------------------c-----------CH
Confidence            5899999999999999999999 9999999997543110                           0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+...+.+.+. +.|++++.+++++++..+++.+. +.+..           +++..++.+|.||+|+|...
T Consensus       212 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~-v~~~~-----------~g~~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          212 QMAAIIKKRLK-KKGVEVVTNALAKGAEEREDGVT-VTYEA-----------NGETKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESEEEEEEEEETTEEE-EEEEE-----------TTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCeEE-EEEEe-----------CCceeEEEcCEEEECcCCCc
Confidence            33444555554 57999999999999987766432 33210           01236799999999999543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.71  E-value=6e-08  Score=94.94  Aligned_cols=54  Identities=15%  Similarity=0.072  Sum_probs=42.0

Q ss_pred             HHcCCCcEEEcCceEEEEEEEC----CEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCCC
Q 020815          180 LLARPNVKLFNAVAAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP  243 (321)
Q Consensus       180 ~~~~~gv~i~~~~~v~~l~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~~  243 (321)
                      +.++.|++|+.++.|++|+.++    ++++||...+          .++...+++| |.||+|+|+++.
T Consensus       240 ~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~----------~~g~~~~v~A~k~VILaaG~~~s  298 (587)
T 1gpe_A          240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGT----------NKAVNFDVFAKHEVLLAAGSAIS  298 (587)
T ss_dssp             TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEE----------ETTEEEEEEEEEEEEECSCTTTH
T ss_pred             hhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEe----------CCCcEEEEEecccEEEccCCCCC
Confidence            3346899999999999999874    4899998752          1123467899 899999998763

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.70  E-value=2.8e-07  Score=87.60  Aligned_cols=103  Identities=13%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  210 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRL-GAEVTLIEYMPEILPQ--------------------------------------GDP  210 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            4899999999999999999999 9999999997543110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++.+.+.+.+. +.|++++.+++++++..+++.+. +....      .   ..|+..++.+|.||+|+|..+.
T Consensus       211 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~~------~---~~g~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          211 ETAALLRRALE-KEGIRVRTKTKAVGYEKKKDGLH-VRLEP------A---EGGEGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTEEE-EEEEE------T---TCCSCEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHH-hcCCEEEcCCEEEEEEEeCCEEE-EEEee------c---CCCceeEEEcCEEEECCCcccC
Confidence            33444555554 57999999999999987776532 33320      0   0023348999999999995543

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.70  E-value=1.4e-08  Score=98.40  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      +||+||||+|.+|+.+|.+|++  |.+|+|||++..
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc--CCcEEEEecCCC
Confidence            6999999999999999999998  799999999854

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.70  E-value=2.7e-08  Score=94.29  Aligned_cols=112  Identities=19%  Similarity=0.279  Sum_probs=68.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .||+|||||++|+++|+.|++. +|.+|+|||+.+..|-   .......          ++..   .+..         .
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~---~~~~~~~----------~~~~---~~~~---------~   57 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGY---LSGGLSA----------YFNH---TINE---------L   57 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSS---CCC-----------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcc---cCccchh----------hhcC---CCCC---------H
Confidence            5999999999999999999983 4799999999876541   1110000          0000   0000         0


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+...+.+.+. +.+++++.+++|+.+..+++.+.- ....             +..++.+|.+|+|||...
T Consensus        58 ~~~~~~~~~~~~-~~gi~~~~~~~V~~id~~~~~v~v-~~~~-------------~~~~~~~d~lviAtG~~p  115 (452)
T 3oc4_A           58 HEARYITEEELR-RQKIQLLLNREVVAMDVENQLIAW-TRKE-------------EQQWYSYDKLILATGASQ  115 (452)
T ss_dssp             ---CCCCHHHHH-HTTEEEECSCEEEEEETTTTEEEE-EETT-------------EEEEEECSEEEECCCCCB
T ss_pred             HHhhcCCHHHHH-HCCCEEEECCEEEEEECCCCEEEE-EecC-------------ceEEEEcCEEEECCCccc
Confidence            000000112222 468999999999998776664432 1110             236899999999999754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.69  E-value=4.5e-07  Score=80.90  Aligned_cols=99  Identities=11%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                       . 
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~---------------------------------------~-  181 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANI-CKKVYLIHRRDGFRC---------------------------------------A-  181 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTT-SSEEEEECSSSSCCS---------------------------------------C-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCEEEEEeeCCccCC---------------------------------------C-
Confidence            35899999999999999999999 999999998753210                                       0 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                          ..+.+++.++.|++++.++.++++..+++++.++.....         .+|+..++.+|.||+|+|...
T Consensus       182 ----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p  241 (311)
T 2q0l_A          182 ----PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNT---------ATNEKRELVVPGFFIFVGYDV  241 (311)
T ss_dssp             ----HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEET---------TTCCEEEEECSEEEECSCEEE
T ss_pred             ----HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEec---------CCCceEEEecCEEEEEecCcc
Confidence                113344444579999999999999877677766666420         112335899999999999443

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.69  E-value=6.6e-08  Score=94.07  Aligned_cols=137  Identities=15%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+...                                      ...
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  192 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHL-GIKTTLLELADQVMTP--------------------------------------VDR  192 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSCTT--------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCCccchh--------------------------------------cCH
Confidence            4899999999999999999999 9999999997532110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-------------------CCEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-------------------GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-------------------~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      .+...+.+.+. +.|++++.++.++++..+                   ++++. +...              ++.++.+
T Consensus       193 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~--------------~g~~i~~  256 (565)
T 3ntd_A          193 EMAGFAHQAIR-DQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LTLS--------------NGELLET  256 (565)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EEET--------------TSCEEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EEEc--------------CCCEEEc
Confidence            23344445554 679999999999999873                   44433 2221              2358999


Q ss_pred             CeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          232 KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       232 ~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      |.||+|+|......     .+...|+  .+.....+.++.       +.+...|++|++|+++..
T Consensus       257 D~vi~a~G~~p~~~-----l~~~~g~--~~~~~g~i~vd~-------~~~t~~~~IyA~GD~~~~  307 (565)
T 3ntd_A          257 DLLIMAIGVRPETQ-----LARDAGL--AIGELGGIKVNA-------MMQTSDPAIYAVGDAVEE  307 (565)
T ss_dssp             SEEEECSCEEECCH-----HHHHHTC--CBCTTSSBCCCT-------TCBCSSTTEEECGGGBCE
T ss_pred             CEEEECcCCccchH-----HHHhCCc--ccCCCCCEEECC-------CcccCCCCEEEeeeeEee
Confidence            99999999544321     2222332  111111222221       223457999999998743

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.69  E-value=2.6e-08  Score=95.10  Aligned_cols=115  Identities=11%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      +||+|||||++|+++|+.|++. +|.+|+|||+....+....   .+.          .++......+..          
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~---~~~----------~~~~~~~~~~~~----------   93 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC---GLP----------YVISGAIASTEK----------   93 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG---GHH----------HHHTTSSSCGGG----------
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC---Ccc----------hhhcCCcCCHHH----------
Confidence            5999999999999999999983 3899999999865532110   000          011100000110          


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                        +.....+.+.++.|++++.+++|+.+..+++.+. +...           .+++..++.+|+||+|||...
T Consensus        94 --l~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~-v~~~-----------~~g~~~~~~~d~lviAtG~~p  152 (480)
T 3cgb_A           94 --LIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVY-AEHT-----------KTKDVFEFSYDRLLIATGVRP  152 (480)
T ss_dssp             --GBSSCHHHHHHTTCCEEESSEEEEEEETTTTEEE-EEET-----------TTCCEEEEECSEEEECCCEEE
T ss_pred             --hhhcCHHHHHhhcCCEEEeCCEEEEEECCCCEEE-EEEc-----------CCCceEEEEcCEEEECCCCcc
Confidence              0011123333356999999999988876565432 1110           011224799999999999543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.68  E-value=2.5e-07  Score=88.14  Aligned_cols=103  Identities=14%  Similarity=0.167  Sum_probs=73.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+.+|..|++. |.+|+|+|+.+.+... +                                     ..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~-~-------------------------------------~~  224 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQIGAS-M-------------------------------------DG  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSSS-S-------------------------------------CH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCccccc-c-------------------------------------CH
Confidence            5899999999999999999999 9999999998643210 0                                     02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+...+.+.+. +.|++++.+++++++..+ ++....+.+..      .   .+++..++.+|.||+|+|...
T Consensus       225 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------~---~~g~~~~~~~D~vv~a~G~~p  287 (478)
T 1v59_A          225 EVAKATQKFLK-KQGLDFKLSTKVISAKRNDDKNVVEIVVED------T---KTNKQENLEAEVLLVAVGRRP  287 (478)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTTTEEEEEEEE------T---TTTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEecCCCeEEEEEEE------c---CCCCceEEECCEEEECCCCCc
Confidence            34445555554 579999999999999862 33333444421      0   011346799999999999543

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.68  E-value=6.2e-08  Score=92.25  Aligned_cols=139  Identities=19%  Similarity=0.243  Sum_probs=89.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||+|..|+.+|..|++..|.+|+++|+.+.+....                                     ...
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~-------------------------------------~~~  202 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF-------------------------------------TSK  202 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT-------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc-------------------------------------cCH
Confidence            5899999999999999999884268999999875321100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+.+.+.+.+. +.|++++.+++++++..+++++. +...+              +.++.+|.||+|+|.....     .
T Consensus       203 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~i~aD~Vv~a~G~~p~~-----~  261 (472)
T 3iwa_A          203 SLSQMLRHDLE-KNDVVVHTGEKVVRLEGENGKVA-RVITD--------------KRTLDADLVILAAGVSPNT-----Q  261 (472)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEESSSBEE-EEEES--------------SCEEECSEEEECSCEEECC-----H
T ss_pred             HHHHHHHHHHH-hcCCEEEeCCEEEEEEccCCeEE-EEEeC--------------CCEEEcCEEEECCCCCcCH-----H
Confidence            34455555554 67999999999999987677655 44322              2589999999999954332     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+.+.|+  .+.....+.++.       ..+...|++|++|+++..
T Consensus       262 l~~~~gl--~~~~~g~i~vd~-------~~~t~~~~Iya~GD~~~~  298 (472)
T 3iwa_A          262 LARDAGL--ELDPRGAIIVDT-------RMRTSDPDIFAGGDCVTI  298 (472)
T ss_dssp             HHHHHTC--CBCTTCCEECCT-------TCBCSSTTEEECGGGEEE
T ss_pred             HHHhCCc--cCCCCCCEEECC-------CcccCCCCEEEeccceec
Confidence            2222332  111112222222       223457999999998743

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.68  E-value=3.4e-07  Score=86.67  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=74.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+....                          +           ..
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~--------------------------~-----------d~  189 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKM-KKTVHVFESLENLLPKY--------------------------F-----------DK  189 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTTT--------------------------C-----------CH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcccccc--------------------------C-----------CH
Confidence            4799999999999999999999 99999999975421100                          0           12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+.+.+.+.+. +.|++++.++.|+++..+++++ .+.+.              + .++.+|.||+|+|....
T Consensus       190 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v-~v~~~--------------~-g~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          190 EMVAEVQKSLE-KQAVIFHFEETVLGIEETANGI-VLETS--------------E-QEISCDSGIFALNLHPQ  245 (452)
T ss_dssp             HHHHHHHHHHH-TTTEEEEETCCEEEEEECSSCE-EEEES--------------S-CEEEESEEEECSCCBCC
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEccCCeE-EEEEC--------------C-CEEEeCEEEECcCCCCC
Confidence            34455555554 7899999999999998777766 55542              1 37999999999996543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.67  E-value=1.4e-07  Score=89.34  Aligned_cols=98  Identities=14%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||.+|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~-g~~V~lv~~~~~~l~~--------------------------------------~~~  208 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRL-GAEVIVLEYMDRILPT--------------------------------------MDL  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCCccccc--------------------------------------cCH
Confidence            4799999999999999999999 9999999997542110                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+.+.+.+.+. +.|++++.+++|+++..+++.+ .+.+.              ++.++.+|.||+|+|..+.
T Consensus       209 ~~~~~l~~~l~-~~Gv~i~~~~~V~~i~~~~~~v-~v~~~--------------~g~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          209 EVSRAAERVFK-KQGLTIRTGVRVTAVVPEAKGA-RVELE--------------GGEVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEEETTEE-EEEET--------------TSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCEE-EEEEC--------------CCeEEEcCEEEECcCCCcC
Confidence            33444455554 5699999999999998777643 23321              1267999999999995543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.66  E-value=4.3e-08  Score=90.98  Aligned_cols=107  Identities=16%  Similarity=0.156  Sum_probs=69.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ...|+|||||+||+++|..|.+. +.+|+|||+.+..+..             ......++.. ..+.+.          
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~-~~~itlie~~~~~~y~-------------~~~l~~~l~g-~~~~~~----------   63 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGK-CDDITMINSEKYLPYY-------------RPRLNEIIAK-NKSIDD----------   63 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTT-CSCEEEECSSSSCCBC-------------GGGHHHHHHS-CCCGGG----------
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCC-CCEEEEEECCCCCCcc-------------cChhhHHHcC-CCCHHH----------
Confidence            57899999999999999999766 8999999998754311             0011111211 011110          


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                        +.....+.+. +.+++++.+++|+.+..++..   |.+.              ++.++.+|++|+|||..
T Consensus        64 --l~~~~~~~~~-~~~i~~~~~~~V~~id~~~~~---v~~~--------------~g~~~~yd~lvlAtG~~  115 (385)
T 3klj_A           64 --ILIKKNDWYE-KNNIKVITSEFATSIDPNNKL---VTLK--------------SGEKIKYEKLIIASGSI  115 (385)
T ss_dssp             --TBSSCHHHHH-HTTCEEECSCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEE
T ss_pred             --ccCCCHHHHH-HCCCEEEeCCEEEEEECCCCE---EEEC--------------CCCEEECCEEEEecCCC
Confidence              0001111122 469999999999999766653   3332              23689999999999964

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.65  E-value=4e-07  Score=81.20  Aligned_cols=97  Identities=20%  Similarity=0.236  Sum_probs=72.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. +.+|+++++.+.+.                             ++            
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~-----------------------------~~------------  182 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEMK-----------------------------AD------------  182 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSSCC-----------------------------SC------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCEEEEEEeCcccC-----------------------------cc------------
Confidence            4899999999999999999999 99999999875320                             00            


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                         ..+.+++.+..|++++.+++++++..+++++.++.+.+.         .+++..++.+|.||+|+|..
T Consensus       183 ---~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~  241 (310)
T 1fl2_A          183 ---QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR---------VSGDIHNIELAGIFVQIGLL  241 (310)
T ss_dssp             ---HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEET---------TTCCEEEEECSEEEECSCEE
T ss_pred             ---HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEEC---------CCCcEEEEEcCEEEEeeCCc
Confidence               123344443479999999999999876677777776431         11234689999999999944

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.65  E-value=3.5e-07  Score=82.10  Aligned_cols=136  Identities=20%  Similarity=0.255  Sum_probs=88.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..|++. +.+|.++++.+....                                       .  
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~i~~~~~~~~---------------------------------------~--  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEY-VKNVTIIEYMPKYMC---------------------------------------E--  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-BSEEEEECSSSSCCS---------------------------------------C--
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCcEEEEEcCCccCC---------------------------------------C--
Confidence            5799999999999999999999 999999998753210                                       0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                         ..+.+++. +.|++++.+++++++..+++++.++.+...         .+|+..++.+|.||+|+|.....     .
T Consensus       194 ---~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p~~-----~  255 (319)
T 3cty_A          194 ---NAYVQEIK-KRNIPYIMNAQVTEIVGDGKKVTGVKYKDR---------TTGEEKLIETDGVFIYVGLIPQT-----S  255 (319)
T ss_dssp             ---HHHHHHHH-HTTCCEECSEEEEEEEESSSSEEEEEEEET---------TTCCEEEECCSEEEECCCEEECC-----G
T ss_pred             ---HHHHHHHh-cCCcEEEcCCeEEEEecCCceEEEEEEEEc---------CCCceEEEecCEEEEeeCCccCh-----H
Confidence               11233333 479999999999999876666777766420         11233579999999999944332     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.++  .+.....+.++.       +.+...|++|++|+++.
T Consensus       256 ~l~~~gl--~~~~~g~i~vd~-------~~~t~~~~vya~GD~~~  291 (319)
T 3cty_A          256 FLKDSGV--KLDERGYIVVDS-------RQRTSVPGVYAAGDVTS  291 (319)
T ss_dssp             GGTTSCC--CBCTTSCBCCCT-------TCBCSSTTEEECSTTBT
T ss_pred             HHhhccc--cccCCccEeCCC-------CCccCCCCEEEeecccC
Confidence            1222222  011011111211       22345799999999874

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.65  E-value=2e-07  Score=89.23  Aligned_cols=97  Identities=20%  Similarity=0.296  Sum_probs=71.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+....                          +           ..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~~--------------------------~-----------~~  236 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRK-GKEVVLIDVVDTCLAGY--------------------------Y-----------DR  236 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT--------------------------S-----------CH
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEEcccchhhhH--------------------------H-----------HH
Confidence            5799999999999999999999 99999999975421100                          0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+.+.+.+. +.|++++.+++++++.. ++++..+.+ +              +.++.+|.||+|+|...
T Consensus       237 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~-~~~v~~v~~-~--------------g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          237 DLTDLMAKNME-EHGIQLAFGETVKEVAG-NGKVEKIIT-D--------------KNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             HHHHHHHHHHH-TTTCEEEETCCEEEEEC-SSSCCEEEE-S--------------SCEEECSEEEECCCEEE
T ss_pred             HHHHHHHHHHH-hCCeEEEeCCEEEEEEc-CCcEEEEEE-C--------------CcEEECCEEEECCCCCc
Confidence            34445555554 68999999999999875 444444443 1              25799999999999543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.65  E-value=4.3e-07  Score=81.90  Aligned_cols=98  Identities=16%  Similarity=0.256  Sum_probs=72.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|.++++.+.+..                                        . 
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~~~----------------------------------------~-  197 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAFRA----------------------------------------S-  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSCCS----------------------------------------C-
T ss_pred             CeEEEECCChHHHHHHHHHHhc-CCeEEEEecCCcCCc----------------------------------------c-
Confidence            5799999999999999999999 999999999753210                                        0 


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECC--EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         ..+.+++.++.|++++.+++++++..+++  ++.++.+...         .+++..++.+|.||+|+|...
T Consensus       198 ---~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p  259 (333)
T 1vdc_A          198 ---KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV---------VTGDVSDLKVSGLFFAIGHEP  259 (333)
T ss_dssp             ---HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET---------TTCCEEEEECSEEEECSCEEE
T ss_pred             ---HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEec---------CCCceEEEecCEEEEEeCCcc
Confidence               12233444478999999999999986654  6666666421         122446899999999999543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.64  E-value=4.3e-08  Score=90.77  Aligned_cols=108  Identities=17%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      ++||+|||||++|+++|+.|++. |  .+|+|+|++.  |       +.+.......         .+...        .
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~--g-------~~~~~~~l~~---------~~~~~--------~   56 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKL-DGETPLLMITADD--G-------RSYSKPMLST---------GFSKN--------K   56 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTT-CSSSCEEEECSSC--C-------CEECGGGGGG---------TTTTT--------C
T ss_pred             CCcEEEECChHHHHHHHHHHHhh-CCCCCEEEEECCC--C-------CccCcccccH---------HHhCC--------C
Confidence            48999999999999999999998 7  5689999874  1       1111111100         00000        0


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ....+.....+.+.++.+++++.+++++.+..++..+   .+.               ..++.+|.+|+|||...
T Consensus        57 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v---~~~---------------~~~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           57 DADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRI---WIG---------------EEEVRYRDLVLAWGAEP  113 (384)
T ss_dssp             CHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGTEE---EET---------------TEEEECSEEEECCCEEE
T ss_pred             CHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCCEE---EEC---------------CcEEECCEEEEeCCCCc
Confidence            1111111112222235689999998888876544432   221               15799999999999643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.63  E-value=9.7e-08  Score=89.90  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      .+||+|||||++|+++|..|++. |.  +|+|||+.+......    ....+.+        +.. .....   ...  .
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~-g~~~~V~lie~~~~~~~~~----~~l~~~~--------~~~-~~~~~---~~~--~   64 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDATVIPHHL----PPLSKAY--------LAG-KATAE---SLY--L   64 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCCSCCBCS----GGGGTTT--------TTT-CSCSG---GGB--S
T ss_pred             CCcEEEEcCHHHHHHHHHHHHcc-CcCCCEEEEECCCCCCCcC----CCCcHHH--------hCC-CCChH---Hhc--c
Confidence            58999999999999999999998 87  899999975432110    0000000        000 00000   000  0


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                             .+.+.+. +.|++++.+++|+.+..++..   |.+.              ++.++.+|.||+|||...
T Consensus        65 -------~~~~~~~-~~gv~~~~~~~v~~i~~~~~~---v~~~--------------~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           65 -------RTPDAYA-AQNIQLLGGTQVTAINRDRQQ---VILS--------------DGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             -------SCHHHHH-HTTEEEECSCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEEE
T ss_pred             -------cCHHHHH-hCCCEEEeCCEEEEEECCCCE---EEEC--------------CCCEEECCEEEEcCCCCc
Confidence                   0112222 468999999999888655443   3332              125799999999999754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.62  E-value=3.8e-07  Score=82.27  Aligned_cols=138  Identities=15%  Similarity=0.211  Sum_probs=89.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|.++++.+.+..              .                          .
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~v~~~~~~~~--------------~--------------------------~  191 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDT-ARRITLIHRRPQFRA--------------H--------------------------E  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSSSCCS--------------C--------------------------H
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEcCCccCc--------------c--------------------------H
Confidence            4899999999999999999999 999999998753210              0                          1


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ...+.+.+.+. +.|++++.++.+.++.. ++++.++.+...         .+++..++.+|.||+|+|.....     .
T Consensus       192 ~~~~~l~~~l~-~~gv~v~~~~~v~~i~~-~~~~~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p~~-----~  255 (335)
T 2zbw_A          192 ASVKELMKAHE-EGRLEVLTPYELRRVEG-DERVRWAVVFHN---------QTQEELALEVDAVLILAGYITKL-----G  255 (335)
T ss_dssp             HHHHHHHHHHH-TTSSEEETTEEEEEEEE-SSSEEEEEEEET---------TTCCEEEEECSEEEECCCEEEEC-----G
T ss_pred             HHHHHHHhccc-cCCeEEecCCcceeEcc-CCCeeEEEEEEC---------CCCceEEEecCEEEEeecCCCCc-----h
Confidence            12234444444 67999999999999976 455656665310         02234689999999999944321     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+.+.+..  .. ...+.++.       ..+...|++|++|+++.
T Consensus       256 ~l~~~~~~--~~-~g~i~vd~-------~~~t~~~~vya~GD~~~  290 (335)
T 2zbw_A          256 PLANWGLA--LE-KNKIKVDT-------TMATSIPGVYACGDIVT  290 (335)
T ss_dssp             GGGGSCCC--EE-TTEEECCT-------TCBCSSTTEEECSTTEE
T ss_pred             Hhhhccee--cc-CCeeeeCC-------CCCCCCCCEEEeccccc
Confidence            22232321  11 12232322       12345799999999874

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.62  E-value=3.3e-07  Score=87.96  Aligned_cols=138  Identities=9%  Similarity=0.108  Sum_probs=87.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------d~  217 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRILRK---------------------------F-----------DE  217 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSSCTT---------------------------S-----------CH
T ss_pred             CeEEEECChHHHHHHHHHHHHc-CCeEEEEecCCccCcc---------------------------c-----------ch
Confidence            4899999999999999999999 9999999997542110                           0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceE-EEcCeEEEcCCCCCCCcchhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV-MEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~-i~a~~VI~AtG~~~~~~~~~~  249 (321)
                      .+...+.+.+. +.|++++.+++++++..+++....+...+              +.+ +.+|.||+|+|......  .+
T Consensus       218 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~v~~~~--------------g~~~~~~D~vi~a~G~~p~~~--~l  280 (500)
T 1onf_A          218 SVINVLENDMK-KNNINIVTFADVVEIKKVSDKNLSIHLSD--------------GRIYEHFDHVIYCVGRSPDTE--NL  280 (500)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEESSTTCEEEEETT--------------SCEEEEESEEEECCCBCCTTT--TS
T ss_pred             hhHHHHHHHHH-hCCCEEEECCEEEEEEEcCCceEEEEECC--------------CcEEEECCEEEECCCCCcCCC--CC
Confidence            33344555554 67999999999999976543223344321              134 99999999999554321  00


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                       .+.+.+..  + ....+.++.       +.+...|++|+.|+++.
T Consensus       281 -~~~~~g~~--~-~~G~i~vd~-------~~~t~~~~iya~GD~~~  315 (500)
T 1onf_A          281 -KLEKLNVE--T-NNNYIVVDE-------NQRTSVNNIYAVGDCCM  315 (500)
T ss_dssp             -SCTTTTCC--B-SSSCEEECT-------TCBCSSSSEEECSTTEE
T ss_pred             -CchhcCcc--c-cCCEEEECC-------CcccCCCCEEEEecccc
Confidence             01122221  1 111122222       22345799999999983

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.62  E-value=8.1e-08  Score=94.00  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      ..||+|||||++|+++|+.|++. +|.+|+|||+.+..+-   ....+.          .+   ++-.+....       
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~---~~~~lp----------~~---~~g~~~~~~-------   92 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF---ANCGLP----------YY---IGGVITERQ-------   92 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB---CGGGHH----------HH---HTTSSCCGG-------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccc---cCCCCc----------hh---hcCcCCChH-------
Confidence            46999999999999999999984 3789999999876541   110000          00   111000000       


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                       ..+... ++.+.++.+++++.+++|+++..+++.+.....            .+++..++.+|.||+|||..
T Consensus        93 -~~~~~~-~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~------------~~g~~~~~~~d~lviAtG~~  151 (588)
T 3ics_A           93 -KLLVQT-VERMSKRFNLDIRVLSEVVKINKEEKTITIKNV------------TTNETYNEAYDVLILSPGAK  151 (588)
T ss_dssp             -GGBSSC-HHHHHHHTTCEEECSEEEEEEETTTTEEEEEET------------TTCCEEEEECSEEEECCCEE
T ss_pred             -HhhccC-HHHHHHhcCcEEEECCEEEEEECCCCEEEEeec------------CCCCEEEEeCCEEEECCCCC
Confidence             001111 222223568999999999999776664432111            01233578999999999964

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.61  E-value=6.3e-07  Score=79.83  Aligned_cols=97  Identities=15%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. +.+|.++++.+.+..                                       . .
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~-g~~v~~~~~~~~~~~---------------------------------------~-~  186 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANI-CSKIYLIHRRDEFRA---------------------------------------A-P  186 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTT-SSEEEEECSSSSCBS---------------------------------------C-H
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCCCCCC---------------------------------------C-H
Confidence            5899999999999999999999 999999998753200                                       0 1


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                          .+++++.++.|++++.++.+.++..+++++.++.+..          .+|+..++.+|.||+|+|...
T Consensus       187 ----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~----------~~g~~~~~~~D~vv~a~G~~p  244 (315)
T 3r9u_A          187 ----STVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKL----------KDGSIRDLNVPGIFTFVGLNV  244 (315)
T ss_dssp             ----HHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEEC----------TTSCEEEECCSCEEECSCEEE
T ss_pred             ----HHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEc----------CCCCeEEeecCeEEEEEcCCC
Confidence                1223333478999999999999998888888887641          123445899999999999443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.61  E-value=1.3e-07  Score=89.35  Aligned_cols=136  Identities=20%  Similarity=0.236  Sum_probs=87.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||+|..|+.+|..|++. |.+|+|+++.+.+....                          +           ..
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~--------------------------~-----------~~  190 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQ-GKNVTMIVRGERVLRRS--------------------------F-----------DK  190 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT--------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccchhh--------------------------c-----------CH
Confidence            4899999999999999999999 99999999976421100                          0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +. ++++.++.+.++..++ ++..+..               +..++.+|.||+|+|.....     .
T Consensus       191 ~~~~~l~~~l~-~~-v~i~~~~~v~~i~~~~-~v~~v~~---------------~g~~i~~D~Vv~a~G~~p~~-----~  247 (449)
T 3kd9_A          191 EVTDILEEKLK-KH-VNLRLQEITMKIEGEE-RVEKVVT---------------DAGEYKAELVILATGIKPNI-----E  247 (449)
T ss_dssp             HHHHHHHHHHT-TT-SEEEESCCEEEEECSS-SCCEEEE---------------TTEEEECSEEEECSCEEECC-----H
T ss_pred             HHHHHHHHHHH-hC-cEEEeCCeEEEEeccC-cEEEEEe---------------CCCEEECCEEEEeeCCccCH-----H
Confidence            34455555554 55 9999999999886443 3433433               23689999999999954332     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+...+..  +.....+.++.       ..+...|++|++|+++..
T Consensus       248 l~~~~gl~--~~~~G~i~vd~-------~~~t~~~~IyA~GD~~~~  284 (449)
T 3kd9_A          248 LAKQLGVR--IGETGAIWTNE-------KMQTSVENVYAAGDVAET  284 (449)
T ss_dssp             HHHHTTCC--BCTTSSBCCCT-------TCBCSSTTEEECSTTBCE
T ss_pred             HHHhCCcc--CCCCCCEEECC-------CCccCCCCEEEeeeeeee
Confidence            23333331  11111122221       223467999999998753

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.61  E-value=7e-07  Score=85.38  Aligned_cols=103  Identities=16%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  239 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARL-GAKVTVVEFLDTILGG--------------------------------------MDG  239 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSSSS--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecccccccc--------------------------------------CCH
Confidence            4799999999999999999999 9999999987642110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+.+.+.+.+. +.|++++.+++++++..+++.+. +...+      .   .+|+..++.+|.||+|+|....
T Consensus       240 ~~~~~l~~~l~-~~gV~v~~~~~v~~i~~~~~~~~-v~~~~------~---~~g~~~~i~~D~Vi~a~G~~p~  301 (491)
T 3urh_A          240 EVAKQLQRMLT-KQGIDFKLGAKVTGAVKSGDGAK-VTFEP------V---KGGEATTLDAEVVLIATGRKPS  301 (491)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTEEE-EEEEE------T---TSCCCEEEEESEEEECCCCEEC
T ss_pred             HHHHHHHHHHH-hCCCEEEECCeEEEEEEeCCEEE-EEEEe------c---CCCceEEEEcCEEEEeeCCccC
Confidence            34445555554 67999999999999988777543 33321      0   0123468999999999995443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.61  E-value=1.1e-07  Score=87.57  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=64.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..||+|||||++|+++|..|++. | +|+|||+.....   +.... .         ...+.. .++++...     .. 
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~-g-~V~lie~~~~~~---~~~~~-l---------~~~~~g-~~~~~~~~-----~~-   65 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQT-Y-EVTVIDKEPVPY---YSKPM-L---------SHYIAG-FIPRNRLF-----PY-   65 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSSSCC---CCSTT-H---------HHHHTT-SSCGGGGC-----SS-
T ss_pred             CCcEEEECCcHHHHHHHHHHhhc-C-CEEEEECCCCCc---cccch-h---------HHHHhC-CCCHHHhc-----cC-
Confidence            36999999999999999999999 8 999999986432   10000 0         011110 01111100     00 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                            +.+.+. +.|++++.+++|+.+..++..+.   .               +..++.+|++|+|||..
T Consensus        66 ------~~~~~~-~~~v~~~~g~~v~~id~~~~~V~---~---------------~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           66 ------SLDWYR-KRGIEIRLAEEAKLIDRGRKVVI---T---------------EKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             ------CHHHHH-HHTEEEECSCCEEEEETTTTEEE---E---------------SSCEEECSEEEECCCEE
T ss_pred             ------CHHHHH-hCCcEEEECCEEEEEECCCCEEE---E---------------CCcEEECCEEEECCCCC
Confidence                  011111 45899999988888754443322   1               12579999999999964

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.60  E-value=5.4e-07  Score=85.72  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+....                          +           ..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~--------------------------~-----------~~  220 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRL-GADVTAVEFLGHVGGVG--------------------------I-----------DM  220 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSCSS--------------------------C-----------CH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEeccCccCCcc--------------------------c-----------CH
Confidence            4899999999999999999999 99999999975421100                          0           12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      ++...+.+.+. +.|++++.+++++++..+++....+....      .   ..++..++.+|.||+|+|....
T Consensus       221 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~------~---~~~~~~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          221 EISKNFQRILQ-KQGFKFKLNTKVTGATKKSDGKIDVSIEA------A---SGGKAEVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEECTTSCEEEEEEE------T---TSCCCEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHH-HCCCEEEeCceEEEEEEcCCceEEEEEEe------c---CCCCceEEEcCEEEECcCCCcC
Confidence            33445555554 57999999999999987665412233210      0   0113468999999999995543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.60  E-value=2.1e-08  Score=95.24  Aligned_cols=40  Identities=33%  Similarity=0.455  Sum_probs=36.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      ..+||+|||||++|+++|+.|++. |++|+|+|+.+.+||.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~~GG~  160 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAK-GYEVHVYDRYDRMGGL  160 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSCSTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCe
Confidence            358999999999999999999999 9999999998877763

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.59  E-value=3.2e-07  Score=87.14  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~-G~~Vtlv~~~~~~l~~---------------------------~-----------~~  207 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSF-GSEVTVVALEDRLLFQ---------------------------F-----------DP  207 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCccccc---------------------------c-----------CH
Confidence            4799999999999999999999 9999999987532100                           0           01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCce-EEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~a~~VI~AtG~~~  242 (321)
                      .+...+.+.+. +.|++++.+++++++..+++. ..+.+.+              +. ++.+|.||+|+|...
T Consensus       208 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~-~~v~~~~--------------G~~~i~~D~vv~a~G~~p  264 (463)
T 2r9z_A          208 LLSATLAENMH-AQGIETHLEFAVAALERDAQG-TTLVAQD--------------GTRLEGFDSVIWAVGRAP  264 (463)
T ss_dssp             HHHHHHHHHHH-HTTCEEESSCCEEEEEEETTE-EEEEETT--------------CCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCe-EEEEEeC--------------CcEEEEcCEEEECCCCCc
Confidence            23344445554 579999999999999877664 3344421              24 799999999999544

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.59  E-value=9.4e-07  Score=79.47  Aligned_cols=97  Identities=21%  Similarity=0.251  Sum_probs=71.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                       .  
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~---------------------------------------~--  190 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKF-ADEVTVIHRRDTLRA---------------------------------------N--  190 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSCCS---------------------------------------C--
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeCCCcCCc---------------------------------------c--
Confidence            5799999999999999999999 999999998753210                                       0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         ..+.+++.++.|++++.+++++++.. ++++.+|.+...         .+|+..++.+|.||+|+|...
T Consensus       191 ---~~~~~~l~~~~gv~i~~~~~v~~i~~-~~~v~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p  249 (325)
T 2q7v_A          191 ---KVAQARAFANPKMKFIWDTAVEEIQG-ADSVSGVKLRNL---------KTGEVSELATDGVFIFIGHVP  249 (325)
T ss_dssp             ---HHHHHHHHTCTTEEEECSEEEEEEEE-SSSEEEEEEEET---------TTCCEEEEECSEEEECSCEEE
T ss_pred             ---hHHHHHHHhcCCceEecCCceEEEcc-CCcEEEEEEEEC---------CCCcEEEEEcCEEEEccCCCC
Confidence               12334454457999999999999976 455666766420         122345899999999999443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.58  E-value=1.4e-07  Score=92.38  Aligned_cols=135  Identities=14%  Similarity=0.196  Sum_probs=87.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+++++.+.+...                           +           ..
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------~~  228 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRER-GIEVTLVEMANQVMPP---------------------------I-----------DY  228 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT---------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCccccc---------------------------C-----------CH
Confidence            4899999999999999999999 9999999987532110                           0           12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.++.++++..+++   +|...              ++.++.+|.||+|+|.....     .
T Consensus       229 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~---~v~~~--------------~g~~i~~D~Vi~a~G~~p~~-----~  285 (588)
T 3ics_A          229 EMAAYVHEHMK-NHDVELVFEDGVDALEENGA---VVRLK--------------SGSVIQTDMLILAIGVQPES-----S  285 (588)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEGGGT---EEEET--------------TSCEEECSEEEECSCEEECC-----H
T ss_pred             HHHHHHHHHHH-HcCCEEEECCeEEEEecCCC---EEEEC--------------CCCEEEcCEEEEccCCCCCh-----H
Confidence            33445555554 67999999999999865444   34442              22579999999999954332     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+...+..  +.....+.++       ...+...|++|++|+++..
T Consensus       286 ~l~~~g~~--~~~~g~i~vd-------~~~~t~~~~IyA~GD~~~~  322 (588)
T 3ics_A          286 LAKGAGLA--LGVRGTIKVN-------EKFQTSDPHIYAIGDAIEV  322 (588)
T ss_dssp             HHHHTTCC--BCGGGCBCCC-------TTSBCSSTTEEECGGGBCE
T ss_pred             HHHhcCce--EcCCCCEEEC-------CccccCCCCEEEeeeeeec
Confidence            23333331  1111112222       1233457999999998743

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.58  E-value=6e-07  Score=85.69  Aligned_cols=101  Identities=12%  Similarity=0.059  Sum_probs=71.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~~---------------------------~-----------~~  226 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGLMQG---------------------------A-----------DR  226 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCccccc---------------------------c-----------CH
Confidence            4899999999999999999999 9999999997542110                           0           12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++...+.+.+. +.|++++.++++.++..+++.+ .+.+.+      ..    +++.++.+|.||+|+|...
T Consensus       227 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~~------~~----~~g~~~~~D~vv~a~G~~p  286 (482)
T 1ojt_A          227 DLVKVWQKQNE-YRFDNIMVNTKTVAVEPKEDGV-YVTFEG------AN----APKEPQRYDAVLVAAGRAP  286 (482)
T ss_dssp             HHHHHHHHHHG-GGEEEEECSCEEEEEEEETTEE-EEEEES------SS----CCSSCEEESCEEECCCEEE
T ss_pred             HHHHHHHHHHH-hcCCEEEECCEEEEEEEcCCeE-EEEEec------cC----CCceEEEcCEEEECcCCCc
Confidence            33444455554 6799999999999998776542 333321      00    0125688999999999443

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.57  E-value=6.2e-07  Score=85.08  Aligned_cols=101  Identities=19%  Similarity=0.270  Sum_probs=71.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------~~  212 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNY-GVDVTIVEFLPRALPN---------------------------E-----------DA  212 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcCCccccc---------------------------c-----------CH
Confidence            4899999999999999999999 9999999997542110                           0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.+++++++..+++.+. +....           +++..++.+|.||+|+|....
T Consensus       213 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~-v~~~~-----------~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          213 DVSKEIEKQFK-KLGVTILTATKVESIADGGSQVT-VTVTK-----------DGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCEEEEEEECSSCEE-EEEES-----------SSCEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHH-HcCCEEEeCcEEEEEEEcCCeEE-EEEEc-----------CCceEEEEcCEEEECCCCCcc
Confidence            23344444454 57999999999999986655432 33210           123367999999999995443

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.57  E-value=3.8e-07  Score=86.97  Aligned_cols=99  Identities=13%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------d~  226 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGL-GSETHLVIRGETVLRK---------------------------F-----------DE  226 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT---------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEeCCccccc---------------------------c-----------CH
Confidence            4899999999999999999999 9999999997542110                           0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+.+.+.+. +.|++++.+++++++..+++. +..+.+.+            |+ .++.+|.||+|+|...
T Consensus       227 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~------------G~-~~i~~D~vv~a~G~~p  285 (479)
T 2hqm_A          227 CIQNTITDHYV-KEGINVHKLSKIVKVEKNVETDKLKIHMND------------SK-SIDDVDELIWTIGRKS  285 (479)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEECC-CCCEEEEETT------------SC-EEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-hCCeEEEeCCEEEEEEEcCCCcEEEEEECC------------Cc-EEEEcCEEEECCCCCC
Confidence            23344455554 579999999999999765432 34444421            12 5799999999999543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.57  E-value=2.1e-07  Score=86.73  Aligned_cols=108  Identities=18%  Similarity=0.181  Sum_probs=66.2

Q ss_pred             cEEEECCChHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           92 DVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~---~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      ||+|||||++|+++|+.|++   . |.+|+|||+++......    ...              ...........+  .. 
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~-g~~V~vie~~~~~~~~~----~~~--------------~~~~~~~~~~~~--~~-   60 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGS-KADVKVINKSRFSYFRP----ALP--------------HVAIGVRDVDEL--KV-   60 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGG-GSEEEEEESSSEEEECC----SSC--------------CCCSSCCCCCCE--EE-
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCC-CCeEEEEeCCCCceecc----chh--------------hcccCCcCHHHH--HH-
Confidence            79999999999999999999   7 99999999986331110    000              000000011111  11 


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                            .+.+.+ ++.+++++.+ +|+.+..++..   |.+.++          .+...++.+|.||+|+|...
T Consensus        61 ------~~~~~~-~~~gv~~~~~-~v~~i~~~~~~---V~~~~g----------~~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           61 ------DLSEAL-PEKGIQFQEG-TVEKIDAKSSM---VYYTKP----------DGSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             ------EHHHHT-GGGTCEEEEC-EEEEEETTTTE---EEEECT----------TSCEEEEECSEEEECCCCEE
T ss_pred             ------HHHHHH-hhCCeEEEEe-eEEEEeCCCCE---EEEccC----------CcccceeeCCEEEECCCCCc
Confidence                  112222 3568999988 88888665553   333221          11235699999999999743

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.56  E-value=3.1e-07  Score=87.28  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=72.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  218 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASEIVPT--------------------------------------MDA  218 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCccccc--------------------------------------ccH
Confidence            4899999999999999999999 9999999998542110                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+.+.+.+. +.|++++.++++.++..+++.+ .+.+..      .   .+++..++.+|.||+|+|...
T Consensus       219 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------~---~~g~~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          219 EIRKQFQRSLE-KQGMKFKLKTKVVGVDTSGDGV-KLTVEP------S---AGGEQTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             HHHHHHHHHHH-HSSCCEECSEEEEEEECSSSSE-EEEEEE------S---SSCCCEEEEESEEECCCCEEE
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEEcCCeE-EEEEEe------c---CCCcceEEECCEEEECCCCCc
Confidence            33444555554 5799999999999987655433 233321      0   012346899999999999543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.56  E-value=1.3e-06  Score=77.86  Aligned_cols=138  Identities=20%  Similarity=0.243  Sum_probs=90.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-.|+|||+|..|+.+|..|++. +.+|+++++...+..                                       . 
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~~~---------------------------------------~-  192 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSY-STKVYLIHRRDTFKA---------------------------------------Q-  192 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-SSEEEEECSSSSCCS---------------------------------------C-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh-CCeEEEEEeCCCCCc---------------------------------------C-
Confidence            35899999999999999999999 999999998753211                                       0 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                          ..+++++.++.|++++.++.++++..+ +++.++.+.+.         .+|+..++.+|.||+|+|....     .
T Consensus       193 ----~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~---------~~g~~~~~~~D~vv~a~G~~p~-----~  253 (323)
T 3f8d_A          193 ----PIYVETVKKKPNVEFVLNSVVKEIKGD-KVVKQVVVENL---------KTGEIKELNVNGVFIEIGFDPP-----T  253 (323)
T ss_dssp             ----HHHHHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEET---------TTCCEEEEECSEEEECCCEECC-----H
T ss_pred             ----HHHHHHHHhCCCcEEEeCCEEEEEecc-CceeEEEEEEC---------CCCceEEEEcCEEEEEECCCCC-----h
Confidence                123445554569999999999998765 55666666430         1123458999999999994433     1


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      ..+...+..  +.....+..+.       ..+...|++|++|+++..
T Consensus       254 ~~~~~~g~~--~~~~g~i~vd~-------~~~t~~~~vya~GD~~~~  291 (323)
T 3f8d_A          254 DFAKSNGIE--TDTNGYIKVDE-------WMRTSVPGVFAAGDCTSA  291 (323)
T ss_dssp             HHHHHTTCC--BCTTSSBCCCT-------TCBCSSTTEEECSTTBST
T ss_pred             hHHhhcCee--ecCCCcEecCC-------CceecCCCEEEcceecCC
Confidence            223333321  11112222222       123457999999998743

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.55  E-value=1.3e-07  Score=89.54  Aligned_cols=115  Identities=11%  Similarity=0.083  Sum_probs=68.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-cccCCCeEEEec
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-YDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~  168 (321)
                      +||+|||||++|+++|..|++. +|.+|+|||+....+..   ...+.          .++... +. ++.. .+     
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~---~~~~~----------~~~~g~-~~~~~~~-~~-----   60 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFL---SCGIA----------LYLGKE-IKNNDPR-GL-----   60 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBC---GGGHH----------HHHTTC-BGGGCGG-GG-----
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcc---cccch----------hhhcCC-cccCCHH-Hh-----
Confidence            4899999999999999999984 38999999998654321   00000          011000 00 0000 00     


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                          ...+.+.+. +.|++++.++++..+..+++.+.   +.+      .   .+++..++++|++|+|||...
T Consensus        61 ----~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~v~---v~~------~---~~g~~~~~~~d~lviAtGs~p  117 (452)
T 2cdu_A           61 ----FYSSPEELS-NLGANVQMRHQVTNVDPETKTIK---VKD------L---ITNEEKTEAYDKLIMTTGSKP  117 (452)
T ss_dssp             ----BSCCHHHHH-HTTCEEEESEEEEEEEGGGTEEE---EEE------T---TTCCEEEEECSEEEECCCEEE
T ss_pred             ----hhcCHHHHH-HcCCEEEeCCEEEEEEcCCCEEE---EEe------c---CCCceEEEECCEEEEccCCCc
Confidence                001112222 46899999988988866555432   211      0   011236799999999999543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.54  E-value=3.1e-07  Score=86.74  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=66.7

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      ||+|||||++|+++|..|++. +|.+|+|||+.+..+.  + ...+.          .++...-..+..   .       
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~--~-~~~~~----------~~~~~~~~~~~~---~-------   58 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--L-SAGMQ----------LYLEGKVKDVNS---V-------   58 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--C-GGGHH----------HHHTTSSCCGGG---S-------
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc--c-cccch----------hhhcCccCCHHH---h-------
Confidence            899999999999999999983 3799999999865431  1 10000          011100001111   0       


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                        ...+.+.+. +.|++++.++.++.+..+++.+.   +..      .   .+++..++++|++|+|||..
T Consensus        59 --~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~v~---~~~------~---~~g~~~~~~~d~lviAtG~~  114 (447)
T 1nhp_A           59 --RYMTGEKME-SRGVNVFSNTEITAIQPKEHQVT---VKD------L---VSGEERVENYDKLIISPGAV  114 (447)
T ss_dssp             --BSCCHHHHH-HTTCEEEETEEEEEEETTTTEEE---EEE------T---TTCCEEEEECSEEEECCCEE
T ss_pred             --hcCCHHHHH-HCCCEEEECCEEEEEeCCCCEEE---EEe------c---CCCceEEEeCCEEEEcCCCC
Confidence              001112222 35899999999988866665432   211      0   01122468999999999954

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.54  E-value=1.3e-07  Score=90.91  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +||++|||+|++|+.+|++|++. |.+|+|||++.
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~   38 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            68999999999999999999998 99999999876

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.53  E-value=2.5e-07  Score=89.93  Aligned_cols=114  Identities=13%  Similarity=0.047  Sum_probs=68.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .||+|||||++|+++|+.|++. ++.+|+|||+.+..+-.   ...+.          .++   .-.+...... +... 
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~---~~~l~----------~~~---~~~~~~~~~~-~~~~-   63 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA---NCGLP----------YHI---SGEIAQRSAL-VLQT-   63 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC---GGGHH----------HHH---TSSSCCGGGG-BCCC-
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc---ccCch----------HHh---cCCcCChHHh-hccC-
Confidence            3899999999999999999984 37899999998765411   10000          000   0000000000 0001 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                             .+.+.++.+++++.+++|+++..+++.+.....            .+++..++.+|+||+|||..
T Consensus        64 -------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~------------~~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           64 -------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRL------------LDGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             -------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEET------------TTCCEEEEECSEEEECCCEE
T ss_pred             -------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEec------------CCCCeEEEECCEEEECCCCC
Confidence                   111222358999999999999766664432111            11233589999999999964

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.52  E-value=8.4e-08  Score=95.40  Aligned_cols=40  Identities=30%  Similarity=0.504  Sum_probs=36.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++|+.+|+.|++. |.+|+|||+.+..||..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~gg~~  412 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIGGQF  412 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSCTTH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCee
Confidence            57999999999999999999999 99999999988777753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.52  E-value=1.2e-06  Score=83.30  Aligned_cols=102  Identities=14%  Similarity=0.184  Sum_probs=71.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------d~  215 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARL-GAEVTVVEFAPRCAPT---------------------------L-----------DE  215 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             ceEEEECCCHHHHHHHHHHHHh-CCEEEEEecCCccccc---------------------------C-----------CH
Confidence            5899999999999999999999 9999999997542110                           0           02


Q ss_pred             HHHHHHHHHH-HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~-~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+.+.+.+.+ . +.|++++.+++++++..+++.+ .+.+..          .+|+..++.+|.||+|+|....
T Consensus       216 ~~~~~l~~~l~~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~~----------~~g~~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          216 DVTNALVGALAK-NEKMKFMTSTKVVGGTNNGDSV-SLEVEG----------KNGKRETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             HHHHHHHHHHHH-HTCCEEECSCEEEEEEECSSSE-EEEEEC----------C---EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHhh-cCCcEEEeCCEEEEEEEcCCeE-EEEEEc----------CCCceEEEECCEEEECCCcccC
Confidence            3344555555 4 5799999999999998765533 233310          0122367999999999995543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.52  E-value=1.6e-07  Score=88.60  Aligned_cols=104  Identities=18%  Similarity=0.319  Sum_probs=65.8

Q ss_pred             ccEEEECCChHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      .||||||||++|+++|+.|++   . |.+|+|||+.+...-         .      ....++.. +..           
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~-g~~Vtlie~~~~~~~---------~------~~~~~~~~-g~~-----------   56 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGS-GHEVTLISANDYFQF---------V------PSNPWVGV-GWK-----------   56 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGG-GSEEEEECSSSEEEC---------G------GGHHHHHH-TSS-----------
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCC-cCEEEEEeCCCCCcc---------c------CCcccccc-Ccc-----------
Confidence            599999999999999999999   7 999999999863110         0      00001100 100           


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ...++...+.+.+. +.|++++.. +|+.+..+++.   |.+.              +..++.+|+||+|+|..
T Consensus        57 ~~~~~~~~l~~~~~-~~gv~~~~~-~v~~id~~~~~---V~~~--------------~g~~i~~d~lviAtG~~  111 (437)
T 3sx6_A           57 ERDDIAFPIRHYVE-RKGIHFIAQ-SAEQIDAEAQN---ITLA--------------DGNTVHYDYLMIATGPK  111 (437)
T ss_dssp             CHHHHEEECHHHHH-TTTCEEECS-CEEEEETTTTE---EEET--------------TSCEEECSEEEECCCCE
T ss_pred             CHHHHHHHHHHHHH-HCCCEEEEe-EEEEEEcCCCE---EEEC--------------CCCEEECCEEEECCCCC
Confidence            11122222233333 679999864 88888655553   3332              22579999999999964

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.51  E-value=1.9e-06  Score=76.83  Aligned_cols=135  Identities=16%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+....-.                                       . .
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~-G~~Vt~v~~~~~~~~---------------------------------------~-~  191 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY-GSKVIILHRRDAFRA---------------------------------------S-K  191 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCS---------------------------------------C-H
T ss_pred             CeEEEECCChHHHHHHHHHHHh-CCeeeeecccccccc---------------------------------------c-c
Confidence            4799999999999999999999 999999998642100                                       0 0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                          .+..+.....+++.+....+.++...++...++.....         ..++..++.+|.||+|+|......     
T Consensus       192 ----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~i~~d~vi~a~G~~pn~~-----  253 (314)
T 4a5l_A          192 ----TMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNL---------VSGEYKVVPVAGLFYAIGHSPNSK-----  253 (314)
T ss_dssp             ----HHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEET---------TTCCEEEEECSEEEECSCEEESCG-----
T ss_pred             ----hhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeec---------ccccceeeccccceEecccccChh-----
Confidence                11222334678888888888888877766667666431         122457899999999999443211     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+. .+          ...+.....+....+...||+|++||.+.
T Consensus       254 ~l~-~~----------~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~  287 (314)
T 4a5l_A          254 FLG-GQ----------VKTADDGYILTEGPKTSVDGVFACGDVCD  287 (314)
T ss_dssp             GGT-TS----------SCBCTTSCBCCBTTBCSSTTEEECSTTTC
T ss_pred             Hhc-cc----------ceEcCCeeEeCCCCccCCCCEEEEEeccC
Confidence            111 11          11111111122334567899999999873

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.50  E-value=1.2e-06  Score=83.77  Aligned_cols=99  Identities=17%  Similarity=0.268  Sum_probs=70.6

Q ss_pred             ccEEEECCChHHHHHHHHhhc----CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEE
Q 020815           91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  166 (321)
                      -.|+|||||..|+.+|..|++    . |.+|+++++.+.+.....                                   
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~-g~~V~~v~~~~~~~~~~l-----------------------------------  224 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARAL-GTEVIQLFPEKGNMGKIL-----------------------------------  224 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHH-TCEEEEECSSSSTTTTTS-----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhc-CCEEEEEecCcccccccC-----------------------------------
Confidence            479999999999999999876    4 788999998643211000                                   


Q ss_pred             ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                        ...+...+.+.+. +.|++++.++.|+++..+++.+ .|.+.              ++.++.||.||+|+|....
T Consensus       225 --~~~~~~~~~~~l~-~~GV~v~~~~~V~~i~~~~~~~-~v~l~--------------dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          225 --PEYLSNWTMEKVR-REGVKVMPNAIVQSVGVSSGKL-LIKLK--------------DGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             --CHHHHHHHHHHHH-TTTCEEECSCCEEEEEEETTEE-EEEET--------------TSCEEEESEEEECCCEEEC
T ss_pred             --CHHHHHHHHHHHH-hcCCEEEeCCEEEEEEecCCeE-EEEEC--------------CCCEEECCEEEECCCCCcc
Confidence              0223344445554 7899999999999998776654 45442              2268999999999995543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.49  E-value=1.4e-06  Score=82.66  Aligned_cols=96  Identities=9%  Similarity=0.152  Sum_probs=71.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+-.                            +           ..
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~----------------------------~-----------~~  216 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARL-GSKVTVLARNTLFFR----------------------------E-----------DP  216 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTTT----------------------------S-----------CH
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEECCccCC----------------------------C-----------CH
Confidence            4899999999999999999999 999999999753210                            0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+.+.+.+.+. +.|++++.+++|+++..+++. ..+.+.               ..++.+|.||+|+|....
T Consensus       217 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~-~~v~~~---------------~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          217 AIGEAVTAAFR-AEGIEVLEHTQASQVAHMDGE-FVLTTT---------------HGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHHHHHHHHH-HTTCEEETTCCEEEEEEETTE-EEEEET---------------TEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCE-EEEEEC---------------CcEEEcCEEEECCCCCcC
Confidence            34455555555 579999999999999876653 234431               257999999999995443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.49  E-value=5.1e-07  Score=85.60  Aligned_cols=98  Identities=20%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||||.+|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------~~  212 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERILPT---------------------------Y-----------DS  212 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCCccccc---------------------------c-----------CH
Confidence            4899999999999999999999 9999999998643210                           0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.+++++++..  +++ .+..            .+|+..++.+|.||+|+|....
T Consensus       213 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~--~~v-~v~~------------~~G~~~~i~~D~vv~a~G~~p~  269 (458)
T 1lvl_A          213 ELTAPVAESLK-KLGIALHLGHSVEGYEN--GCL-LAND------------GKGGQLRLEADRVLVAVGRRPR  269 (458)
T ss_dssp             HHHHHHHHHHH-HHTCEEETTCEEEEEET--TEE-EEEC------------SSSCCCEECCSCEEECCCEEEC
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEe--CCE-EEEE------------CCCceEEEECCEEEECcCCCcC
Confidence            23334444454 56999999999999864  332 1221            1123367999999999995443

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.48  E-value=1.7e-06  Score=82.24  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=71.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+..|..|++. |.+|+++++.+.+...                           +           ..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------~~  221 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKFLPA---------------------------V-----------DE  221 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT---------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCcc---------------------------c-----------CH
Confidence            4799999999999999999999 9999999997532110                           0           12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .+.+.+.+.+. +.|++++.+++++++..+++.+. +...++          ++ ..++.+|.||+|+|..
T Consensus       222 ~~~~~l~~~l~-~~Gv~v~~~~~v~~i~~~~~~~~-v~~~~~----------~g-~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          222 QVAKEAQKILT-KQGLKILLGARVTGTEVKNKQVT-VKFVDA----------EG-EKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             HHHHHHHHHHH-HTTEEEEETCEEEEEEECSSCEE-EEEESS----------SE-EEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-hCCCEEEECCEEEEEEEcCCEEE-EEEEeC----------CC-cEEEECCEEEEeeCCc
Confidence            34445555554 67999999999999987766543 333210          01 2579999999999944

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.48  E-value=7.5e-07  Score=85.22  Aligned_cols=99  Identities=12%  Similarity=0.093  Sum_probs=71.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      -.++|||+|..|+.+|..|++.  +|.+|+|+|+.+.+...                           +           
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---------------------------~-----------  229 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG---------------------------F-----------  229 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT---------------------------S-----------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc---------------------------c-----------
Confidence            4899999999999999999874  27999999998532110                           0           


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ...+.+.+.+.+. +.|++++.+++|+++..+++....|.+.+              +.++.+|.||+|+|...
T Consensus       230 d~~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~--------------G~~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          230 DSELRKQLTEQLR-ANGINVRTHENPAKVTKNADGTRHVVFES--------------GAEADYDVVMLAIGRVP  288 (490)
T ss_dssp             CHHHHHHHHHHHH-HTTEEEEETCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCEEEEEECC--------------CcEEEcCEEEEccCCCc
Confidence            0234445555555 57999999999999987654333444421              24799999999999543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.48  E-value=2.8e-07  Score=86.95  Aligned_cols=112  Identities=16%  Similarity=0.138  Sum_probs=66.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .|||||||++|++||..|++. |  .+|+|||+++.....   ..++.          .++..  ...+.....  ....
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~-g~~~~V~lie~~~~~~~~---~~~l~----------~~~~~--~~~~~~~~~--~~~~   63 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRL-DKESDIIIFEKDRDMSFA---NCALP----------YVIGE--VVEDRRYAL--AYTP   63 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-CSSSCEEEEESSSCSSBC---GGGHH----------HHHTT--SSCCGGGTB--CCCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCCcEEEEeCCCCCCCC---cchhH----------HHHcC--Cccchhhhh--hcCH
Confidence            599999999999999999986 5  679999997643221   11111          01110  000000000  0111


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..    ++    ++.+++++.+++|+.+..+...+.....            ..++..++.+|++|+|||..
T Consensus        64 ~~----~~----~~~~i~~~~~~~V~~id~~~~~~~~~~~------------~~~~~~~~~yd~lVIATGs~  115 (437)
T 4eqs_A           64 EK----FY----DRKQITVKTYHEVIAINDERQTVSVLNR------------KTNEQFEESYDKLILSPGAS  115 (437)
T ss_dssp             HH----HH----HHHCCEEEETEEEEEEETTTTEEEEEET------------TTTEEEEEECSEEEECCCEE
T ss_pred             HH----HH----HhcCCEEEeCCeEEEEEccCcEEEEEec------------cCCceEEEEcCEEEECCCCc
Confidence            11    11    2458999999999888655554332111            11234678999999999964

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.47  E-value=3.3e-07  Score=85.59  Aligned_cols=105  Identities=20%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      .+||+|||||++|+++|+.|++. |.  +|+|||+....+..   . +...+        .++... . .+.   ..  .
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~~~~~~---~-~~~~~--------~~~~~~-~-~~~---~~--~   66 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAERPYD---R-PPLSK--------DFMAHG-D-AEK---IR--L   66 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCSCCBC---S-GGGGT--------HHHHHC-C-GGG---SB--C
T ss_pred             CCcEEEECChHHHHHHHHHHHcc-CCCCeEEEEECCCCCccc---C-CCCCH--------HHhCCC-c-hhh---hh--H
Confidence            58999999999999999999998 76  59999998643211   0 00000        111111 0 110   00  0


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                            +    .+ ++.+++++.+++|+.+..++..   |.+.              ++.++.+|++|+|||...
T Consensus        67 ------~----~~-~~~~v~~~~~~~v~~i~~~~~~---v~~~--------------~g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           67 ------D----CK-RAPEVEWLLGVTAQSFDPQAHT---VALS--------------DGRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             ------C----CT-TSCSCEEEETCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEEE
T ss_pred             ------H----HH-HHCCCEEEcCCEEEEEECCCCE---EEEC--------------CCCEEECCEEEECCCCCC
Confidence                  0    12 3679999999889888654443   2232              125799999999999643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.47  E-value=1.9e-06  Score=82.35  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=69.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+++++......                            +           ..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~l~~----------------------------~-----------d~  225 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGI-GLDTTVMMRSIPLRG----------------------------F-----------DQ  225 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCSSTT----------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEcCccccc----------------------------C-----------CH
Confidence            3799999999999999999999 999999998531100                            0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ++.+.+.+.+. +.|++++.++.+.++...++....+...+      ..   +++..++.+|.||+|+|..
T Consensus       226 ~~~~~l~~~l~-~~gv~~~~~~~v~~i~~~~~~~~~v~~~~------~~---~g~~~~~~~D~vi~a~G~~  286 (488)
T 3dgz_A          226 QMSSLVTEHME-SHGTQFLKGCVPSHIKKLPTNQLQVTWED------HA---SGKEDTGTFDTVLWAIGRV  286 (488)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETEEEEEEEECTTSCEEEEEEE------TT---TTEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEEe------CC---CCeeEEEECCEEEEcccCC
Confidence            34445555554 67999999999999977443322333321      00   1122468999999999944

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.47  E-value=9.2e-07  Score=84.72  Aligned_cols=99  Identities=12%  Similarity=0.166  Sum_probs=70.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-C-CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-P-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~-G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      -.++|||+|..|+.+|..|++. + |.+|+|+|+.+.+-..                           +           
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---------------------------~-----------  233 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG---------------------------F-----------  233 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT---------------------------S-----------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc---------------------------c-----------
Confidence            4899999999999999999874 1 7999999997532110                           0           


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ...+...+.+.+. +.|++++.+++|+++..+++....|.+.+              +.++.+|.||+|+|...
T Consensus       234 d~~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~--------------G~~i~~D~vv~a~G~~p  292 (495)
T 2wpf_A          234 DETIREEVTKQLT-ANGIEIMTNENPAKVSLNTDGSKHVTFES--------------GKTLDVDVVMMAIGRIP  292 (495)
T ss_dssp             CHHHHHHHHHHHH-HTTCEEEESCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCceEEEEECC--------------CcEEEcCEEEECCCCcc
Confidence            0233445555554 67999999999999987654333444421              25799999999999543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.46  E-value=4.8e-07  Score=84.30  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .||+|||||++|+++|+.|++. |.  +|+|||+.+......   ..+....+..          ....   ..+.  ..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~~~y~~---~~l~~~~l~~----------~~~~---~~~~--~~   62 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQA-KYPGRIALINDEKHLPYQR---PPLSKAYLKS----------GGDP---NSLM--FR   62 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCSCEEEECCSSSSSBCS---GGGGTGGGGS----------CCCT---TSSB--SS
T ss_pred             CCEEEEcChHHHHHHHHHHHhh-CcCCCEEEEeCCCCCCCCC---ccCCHHHHCC----------CCCH---HHcc--CC
Confidence            4899999999999999999998 87  899999986433210   0000000000          0000   0000  01


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                             ..+.+. +.+++++. ++++.+..++..   +.+.              ++.++.+|.+|+|||..
T Consensus        63 -------~~~~~~-~~~i~~~~-~~v~~id~~~~~---v~~~--------------~g~~~~~d~lvlAtG~~  109 (404)
T 3fg2_P           63 -------PEKFFQ-DQAIELIS-DRMVSIDREGRK---LLLA--------------SGTAIEYGHLVLATGAR  109 (404)
T ss_dssp             -------CHHHHH-HTTEEEEC-CCEEEEETTTTE---EEES--------------SSCEEECSEEEECCCEE
T ss_pred             -------CHHHHH-hCCCEEEE-EEEEEEECCCCE---EEEC--------------CCCEEECCEEEEeeCCC
Confidence                   011122 46899999 899888665553   2332              22678999999999964

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=8e-07  Score=80.39  Aligned_cols=98  Identities=12%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-.|+|||+|..|+..|..|++. +.+|+++++.+.+..                             .           
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~-g~~V~l~~~~~~~~~-----------------------------~-----------  193 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRF-ARSVTLVHRRDEFRA-----------------------------S-----------  193 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTT-CSEEEEECSSSSCSS-----------------------------C-----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh-CCeEEEEEcCCcCCc-----------------------------c-----------
Confidence            35899999999999999999999 999999998753210                             0           


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                          ..+.+++.++.|++++.+++++++..++ ++.++.+...         .+++..++.+|.||+|+|...
T Consensus       194 ----~~~~~~~~~~~gV~v~~~~~v~~i~~~~-~~~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p  252 (335)
T 2a87_A          194 ----KIMLDRARNNDKIRFLTNHTVVAVDGDT-TVTGLRVRDT---------NTGAETTLPVTGVFVAIGHEP  252 (335)
T ss_dssp             ----TTHHHHHHHCTTEEEECSEEEEEEECSS-SCCEEEEEEE---------TTSCCEEECCSCEEECSCEEE
T ss_pred             ----HHHHHHHhccCCcEEEeCceeEEEecCC-cEeEEEEEEc---------CCCceEEeecCEEEEccCCcc
Confidence                0112233346899999999999987544 3444554320         112346899999999999443

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.46  E-value=3.2e-07  Score=86.49  Aligned_cols=134  Identities=17%  Similarity=0.203  Sum_probs=84.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+..|..+++. |.+|+|+|+.+.+...                           ++           .
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~ll~~---------------------------~d-----------~  188 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYER-GLHPTLIHRSDKINKL---------------------------MD-----------A  188 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSCCSTT---------------------------SC-----------G
T ss_pred             cEEEEECCccchhhhHHHHHhc-CCcceeeeeecccccc---------------------------cc-----------c
Confidence            4799999999999999999999 9999999997643110                           00           1


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ++.+.+.+.+. +.|++++.+++++++  +.+.   +...              ++.++.+|.||+|+|.....     .
T Consensus       189 ~~~~~~~~~l~-~~gV~i~~~~~v~~~--~~~~---v~~~--------------~g~~~~~D~vl~a~G~~Pn~-----~  243 (437)
T 4eqs_A          189 DMNQPILDELD-KREIPYRLNEEINAI--NGNE---ITFK--------------SGKVEHYDMIIEGVGTHPNS-----K  243 (437)
T ss_dssp             GGGHHHHHHHH-HTTCCEEESCCEEEE--ETTE---EEET--------------TSCEEECSEEEECCCEEESC-----G
T ss_pred             hhHHHHHHHhh-ccceEEEeccEEEEe--cCCe---eeec--------------CCeEEeeeeEEEEeceecCc-----H
Confidence            12233344444 679999999998876  3443   3332              23689999999999944321     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~  297 (321)
                      .+...+..  +.....+..+       .+.+...|++|++||++...
T Consensus       244 ~~~~~gl~--~~~~G~I~vd-------~~~~Ts~p~IyA~GDva~~~  281 (437)
T 4eqs_A          244 FIESSNIK--LDRKGFIPVN-------DKFETNVPNIYAIGDIATSH  281 (437)
T ss_dssp             GGTTSSCC--CCTTSCEECC-------TTCBCSSTTEEECGGGEEEE
T ss_pred             HHHhhhhh--hccCCcEecC-------CCccCCCCCEEEEEEccCcc
Confidence            12222220  0011112222       23345679999999987543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.45  E-value=1.6e-06  Score=83.53  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. +.+|+++++.+.+..                                       .  
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~-g~~Vtlv~~~~~l~~---------------------------------------~--  393 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEMKA---------------------------------------D--  393 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-BSEEEEECSSSSCCS---------------------------------------C--
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCcccCc---------------------------------------C--
Confidence            4899999999999999999998 999999998753210                                       0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                         ..+.+++.+..|++++.++.++++..+++++.++...+.         .+|+..++.+|.||+|+|..
T Consensus       394 ---~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~  452 (521)
T 1hyu_A          394 ---QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR---------VSGDIHSVALAGIFVQIGLL  452 (521)
T ss_dssp             ---HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEET---------TTCCEEEEECSEEEECCCEE
T ss_pred             ---HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeC---------CCCceEEEEcCEEEECcCCC
Confidence               123444443369999999999999877777877776431         12244689999999999944

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.45  E-value=3e-07  Score=85.95  Aligned_cols=106  Identities=18%  Similarity=0.244  Sum_probs=66.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCe--EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQ--IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~--V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .||+|||||++|+++|..|++. |.+  |+|||+.+..+...   ..+..         .++. ......   .+   ..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~-g~~~~V~li~~~~~~~y~~---~~l~~---------~~~~-g~~~~~---~~---~~   62 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAE-GFEGRISLIGDEPHLPYDR---PSLSK---------AVLD-GSLERP---PI---LA   62 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEEECSSSSSBCS---GGGGT---------HHHH-TSSSSC---CB---SS
T ss_pred             CCEEEEcccHHHHHHHHHHHcc-CcCCeEEEEECCCCCCcCC---ccccH---------HHhC-CCCCHH---Hh---cC
Confidence            4899999999999999999998 776  99999986543210   00000         0111 011110   11   11


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ..       +.+. +.+++++.+++|+.+..++..   |.+.              ++.++.+|.+|+|||..
T Consensus        63 ~~-------~~~~-~~~i~~~~~~~v~~id~~~~~---v~~~--------------~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           63 EA-------DWYG-EARIDMLTGPEVTALDVQTRT---ISLD--------------DGTTLSADAIVIATGSR  110 (410)
T ss_dssp             CT-------THHH-HTTCEEEESCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEE
T ss_pred             CH-------HHHH-HCCCEEEeCCEEEEEECCCCE---EEEC--------------CCCEEECCEEEEccCCc
Confidence            01       1111 468999999999988655543   2232              22579999999999964

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.44  E-value=2.4e-06  Score=81.38  Aligned_cols=103  Identities=13%  Similarity=0.105  Sum_probs=71.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+|+++.+.+...                                      ...
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  228 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKVLRS--------------------------------------FDS  228 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHc-CCeEEEEEeCCccccc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987532110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-EEEEEEeecceecccCCCCCCC--ceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMD--PNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~--~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+.+.+.+. +.|++++.++.++++..+++. ...+...+      ..   .++  +.++.+|.||+|+|...
T Consensus       229 ~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------~~---~g~~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          229 MISTNCTEELE-NAGVEVLKFSQVKEVKKTLSGLEVSMVTAV------PG---RLPVMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             HHHHHHHHHHH-HTTCEEETTEEEEEEEECSSSEEEEEEECC------TT---SCCEEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEEcc------CC---CCcccceEEEcCEEEEeecccc
Confidence            33444455554 679999999999999875443 23344321      00   012  26799999999999443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.44  E-value=9.2e-07  Score=81.40  Aligned_cols=129  Identities=19%  Similarity=0.216  Sum_probs=85.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||+|..|+.+|..|++. |.+|+|+|+.+.+..                            +           ..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~----------------------------~-----------~~  183 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMFLG----------------------------L-----------DE  183 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCCTT----------------------------C-----------CH
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCeecc----------------------------C-----------CH
Confidence            4799999999999999999999 999999999764211                            0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+.+.+.+.+. +.|++++.+++++++.  .+   ++.+.+              +. +.+|.||+|+|.....     .
T Consensus       184 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~--~~---~v~~~~--------------g~-i~~D~vi~a~G~~p~~-----~  237 (367)
T 1xhc_A          184 ELSNMIKDMLE-ETGVKFFLNSELLEAN--EE---GVLTNS--------------GF-IEGKVKICAIGIVPNV-----D  237 (367)
T ss_dssp             HHHHHHHHHHH-HTTEEEECSCCEEEEC--SS---EEEETT--------------EE-EECSCEEEECCEEECC-----H
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCEEEEEE--ee---EEEECC--------------CE-EEcCEEEECcCCCcCH-----H
Confidence            33344455554 5799999999999885  22   344421              24 9999999999954432     1


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+.+.++..    ..++.++.       +.+...|++|+.|+++..
T Consensus       238 ll~~~gl~~----~~gi~Vd~-------~~~t~~~~IyA~GD~a~~  272 (367)
T 1xhc_A          238 LARRSGIHT----GRGILIDD-------NFRTSAKDVYAIGDCAEY  272 (367)
T ss_dssp             HHHHTTCCB----SSSEECCT-------TSBCSSTTEEECGGGEEB
T ss_pred             HHHhCCCCC----CCCEEECC-------CcccCCCCEEEeEeeeec
Confidence            233344311    12233332       123357899999998643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.44  E-value=1.4e-06  Score=84.24  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=71.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+..|..+++. |.+|+|+++.....+                            +           ..
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~l-G~~VTii~~~~~L~~----------------------------~-----------D~  263 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSL-GYDVTVAVRSIVLRG----------------------------F-----------DQ  263 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH-TCCEEEEESSCSSTT----------------------------S-----------CH
T ss_pred             ceEEEECCCHHHHHHHHHHHhc-CCeEEEecccccccc----------------------------c-----------ch
Confidence            3799999999999999999999 999999987532110                            0           13


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++...+.+.+. +.|++++.++.+..+...++.+. |...              +..++.+|.|++|+|...
T Consensus       264 ei~~~l~~~l~-~~gi~~~~~~~v~~~~~~~~~~~-v~~~--------------~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          264 QCAVKVKLYME-EQGVMFKNGILPKKLTKMDDKIL-VEFS--------------DKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETCCEEEEEEETTEEE-EEET--------------TSCEEEESEEEECSCEEE
T ss_pred             hHHHHHHHHHH-hhcceeecceEEEEEEecCCeEE-EEEc--------------CCCeEEEEEEEEcccccC
Confidence            34455555554 67999999999999998887544 3332              235678999999999443

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.42  E-value=1.9e-07  Score=87.39  Aligned_cols=40  Identities=30%  Similarity=0.576  Sum_probs=37.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++|++||+.|++. | .+|+|+|+++.+||.+
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~~GG~~   46 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQA-GFHDYTILERTDHVGGKC   46 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSSCSSTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEECCCCCCCcc
Confidence            57999999999999999999999 9 8999999999888764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.41  E-value=1.9e-06  Score=77.28  Aligned_cols=134  Identities=15%  Similarity=0.241  Sum_probs=87.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. +.+|+++++.+.+...                                        .
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~-~~~v~~~~~~~~~~~~----------------------------------------~  193 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPI-AKEVSIIHRRDKFRAH----------------------------------------E  193 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTT-BSEEEEECSSSSCSSC----------------------------------------H
T ss_pred             CEEEEECCCHhHHHHHHHHHhh-CCeEEEEEecCcCCcc----------------------------------------H
Confidence            4799999999999999999999 9999999987532100                                        0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      ..    ++++. +.|++++.++.+.++..+++ +.++.+.+.         .+++..++.+|.||+|+|......     
T Consensus       194 ~~----~~~l~-~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~---------~~g~~~~~~~D~vv~a~G~~p~~~-----  253 (332)
T 3lzw_A          194 HS----VENLH-ASKVNVLTPFVPAELIGEDK-IEQLVLEEV---------KGDRKEILEIDDLIVNYGFVSSLG-----  253 (332)
T ss_dssp             HH----HHHHH-HSSCEEETTEEEEEEECSSS-CCEEEEEET---------TSCCEEEEECSEEEECCCEECCCG-----
T ss_pred             HH----HHHHh-cCCeEEEeCceeeEEecCCc-eEEEEEEec---------CCCceEEEECCEEEEeeccCCCch-----
Confidence            00    12233 57999999999999876554 555655431         122457899999999999544321     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      .+...+..  . ....+..+.       +.+...|++|++|+++.
T Consensus       254 ~~~~~~~~--~-~~g~i~vd~-------~~~t~~~~vya~GD~~~  288 (332)
T 3lzw_A          254 PIKNWGLD--I-EKNSIVVKS-------TMETNIEGFFAAGDICT  288 (332)
T ss_dssp             GGGGSSCC--E-ETTEEECCT-------TSBCSSTTEEECGGGEE
T ss_pred             HHhhcCcc--c-cCCeEEeCC-------CCceecCCEEEccceec
Confidence            23333321  1 112222222       22345799999999874

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.41  E-value=1.6e-07  Score=87.54  Aligned_cols=42  Identities=29%  Similarity=0.496  Sum_probs=38.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      ++||+|||||++|+++|+.|++.+|.+|+|+|+++.+||.+.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~   48 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAY   48 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            689999999999999999999854799999999999988764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.40  E-value=1.3e-07  Score=90.99  Aligned_cols=40  Identities=33%  Similarity=0.526  Sum_probs=37.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++||+||+.|++. | .+|+|+|+++.+||.+
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~-G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQN-GIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHT-TCCSEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCCCCCce
Confidence            57999999999999999999999 9 9999999999998865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.40  E-value=1e-07  Score=99.12  Aligned_cols=39  Identities=33%  Similarity=0.546  Sum_probs=35.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~  129 (321)
                      .+||+|||||++|+++|+.|++. |+ +|+|+|+...+||.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~-G~~~Vtv~E~~~~~GG~  226 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGGL  226 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECccHHHHHHHHHHHhc-CCCcEEEEeCCCCCCcc
Confidence            57999999999999999999999 98 79999998777764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.38  E-value=9.2e-08  Score=88.76  Aligned_cols=123  Identities=14%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+....+                                     ..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~l~~~~-------------------------------------~~  188 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDS-GTPASIGIILEYPLERQL-------------------------------------DR  188 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSSCTTTS-------------------------------------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccchhhc-------------------------------------CH
Confidence            4799999999999999999999 999999999864321100                                     02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .+...+.+.+. +.|++++.++.++++    +                        .++.+|.||+|+|.....     .
T Consensus       189 ~~~~~~~~~l~-~~gV~~~~~~~v~~i----g------------------------~~~~~D~vv~a~G~~p~~-----~  234 (385)
T 3klj_A          189 DGGLFLKDKLD-RLGIKIYTNSNFEEM----G------------------------DLIRSSCVITAVGVKPNL-----D  234 (385)
T ss_dssp             HHHHHHHHHHH-TTTCEEECSCCGGGC----H------------------------HHHHHSEEEECCCEEECC-----G
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEc----C------------------------eEEecCeEEECcCcccCh-----h
Confidence            23334444444 789999999887765    1                        467899999999944322     2


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~  296 (321)
                      .+.+.++..    ..++.++.       ..+...|++|++|+++..
T Consensus       235 ~~~~~gl~~----~~gi~vd~-------~~~t~~~~IyA~GD~a~~  269 (385)
T 3klj_A          235 FIKDTEIAS----KRGILVND-------HMETSIKDIYACGDVAEF  269 (385)
T ss_dssp             GGTTSCCCB----SSSEEECT-------TCBCSSTTEEECGGGEEE
T ss_pred             hhhhcCCCc----CCCEEECC-------CcccCCCCEEEEEeeEec
Confidence            233333211    12233322       223467999999998754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.37  E-value=9e-06  Score=76.81  Aligned_cols=136  Identities=14%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHH------------HHHHcCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHI------------FLDELGID  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~------------~l~~~g~~  156 (321)
                      ...|+|||+|..|+.+|..|++. ++.+|.++++....--.   ....+...+......+            .+....-.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~---~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  303 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPA---DDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNT  303 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBC---CCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGG
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCc---cCCccchhccChhHHHHHhcCCHHHHHHHHHHhhcc
Confidence            45899999999999999999984 47899999997643110   0000000001111111            11111100


Q ss_pred             cccCCCeEEEec--HHHHHHH-HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCe
Q 020815          157 YDEQDNYVVIKH--AALFTST-IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (321)
Q Consensus       157 ~~~~~~~~~~~~--~~~~~~~-l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~  233 (321)
                           .|.....  ...+... +.+++....+++++.++.|+++..+++.+. +.+.+      .   .+|+..++.+|.
T Consensus       304 -----~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~------~---~~g~~~~~~~D~  368 (463)
T 3s5w_A          304 -----NYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIE-LALRD------A---GSGELSVETYDA  368 (463)
T ss_dssp             -----TSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEE-EEEEE------T---TTCCEEEEEESE
T ss_pred             -----CCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEE-EEEEE------c---CCCCeEEEECCE
Confidence                 0111111  1122222 233444447999999999999988776532 33321      1   123446799999


Q ss_pred             EEEcCCCCCC
Q 020815          234 VVSSCGHDGP  243 (321)
Q Consensus       234 VI~AtG~~~~  243 (321)
                      ||+|+|....
T Consensus       369 Vv~AtG~~p~  378 (463)
T 3s5w_A          369 VILATGYERQ  378 (463)
T ss_dssp             EEECCCEECC
T ss_pred             EEEeeCCCCC
Confidence            9999996544

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.37  E-value=6.7e-08  Score=91.81  Aligned_cols=38  Identities=34%  Similarity=0.565  Sum_probs=34.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGG  128 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg  128 (321)
                      .+||+|||||++|+.+|..|++. |  .+|+|||+.+.++|
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~vie~~~~~gg   45 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLVPFG   45 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSSSCT
T ss_pred             CceEEEECcCHHHHHHHHHHHhc-CCCCCEEEEeCCCcCCc
Confidence            47999999999999999999997 7  99999999877654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.36  E-value=3.8e-06  Score=79.72  Aligned_cols=138  Identities=17%  Similarity=0.194  Sum_probs=85.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+|+++.+.+....                                     ...
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~d~  214 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLM-GVQTHIIEMLDRALITL-------------------------------------EDQ  214 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTTS-------------------------------------CCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcCCCCC-------------------------------------CCH
Confidence            4799999999999999999999 99999999975421100                                     002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                      ++.+.+.+.+  +  ++++.++.++++..++ +.+. +....          .+|+..++.+|.||+|+|......   +
T Consensus       215 ~~~~~l~~~l--~--v~i~~~~~v~~i~~~~~~~v~-v~~~~----------~~G~~~~i~~D~vi~a~G~~p~~~---l  276 (466)
T 3l8k_A          215 DIVNTLLSIL--K--LNIKFNSPVTEVKKIKDDEYE-VIYST----------KDGSKKSIFTNSVVLAAGRRPVIP---E  276 (466)
T ss_dssp             HHHHHHHHHH--C--CCEECSCCEEEEEEEETTEEE-EEECC----------TTSCCEEEEESCEEECCCEEECCC---T
T ss_pred             HHHHHHHhcC--E--EEEEECCEEEEEEEcCCCcEE-EEEEe----------cCCceEEEEcCEEEECcCCCcccc---c
Confidence            2333433333  2  9999999999998766 6543 33320          022345899999999999443321   0


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                       .+.+.++  .+.. .++.++       ...+...|++|++|+++.
T Consensus       277 -~l~~~gl--~~~~-~Gi~vd-------~~~~t~~~~Iya~GD~~~  311 (466)
T 3l8k_A          277 -GAREIGL--SISK-TGIVVD-------ETMKTNIPNVFATGDANG  311 (466)
T ss_dssp             -TTGGGTC--CBCS-SSBCCC-------TTCBCSSTTEEECGGGTC
T ss_pred             -chhhcCc--eeCC-CCEeEC-------CCccCCCCCEEEEEecCC
Confidence             0122222  0111 112222       123346799999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.36  E-value=1.6e-07  Score=90.06  Aligned_cols=128  Identities=13%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHc---CCCcccCCCeEE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL---GIDYDEQDNYVV  165 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~  165 (321)
                      .+||||||||++|+++|..|.+. ++.+|+|||+.+..+-..    +.+.+.+............   +++.... .. .
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r----~~lsk~l~~~~~~~~~~~~~~~~~~~~~~-~~-~   84 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR----PPLSKELWFSDDPNVTKTLRFKQWNGKER-SI-Y   84 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS----GGGGTGGGCC--CTHHHHCEEECTTSCEE-ES-B
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCC----CCCCHHhhcCCccchhhcccccccccccc-cc-c
Confidence            58999999999999999888652 378999999986543211    1111111111000011111   1110000 00 0


Q ss_pred             EecHHHHH--HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          166 IKHAALFT--STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       166 ~~~~~~~~--~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +.....+.  ..+. ++ .+.|++++.+++|+.+..++..   |.+.              ++.++.+|.+|+|||...
T Consensus        85 ~~~~~~~~~~~~l~-~~-~~~gv~~~~g~~v~~id~~~~~---V~~~--------------~g~~i~yd~lviATGs~p  144 (493)
T 1m6i_A           85 FQPPSFYVSAQDLP-HI-ENGGVAVLTGKKVVQLDVRDNM---VKLN--------------DGSQITYEKCLIATGGTP  144 (493)
T ss_dssp             SSCGGGSBCTTTTT-TS-TTCEEEEEETCCEEEEEGGGTE---EEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             ccchHhhcchhhhh-hh-hcCCeEEEcCCEEEEEECCCCE---EEEC--------------CCCEEECCEEEECCCCCC
Confidence            00000000  0111 11 2568999999999988665543   2332              125789999999999654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.35  E-value=3.5e-07  Score=87.21  Aligned_cols=40  Identities=40%  Similarity=0.766  Sum_probs=37.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++||+||+.|++. |.+|+|+|+.+.+||.+
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeccCCCCCce
Confidence            57999999999999999999999 99999999999998864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.34  E-value=3.2e-07  Score=85.27  Aligned_cols=41  Identities=32%  Similarity=0.502  Sum_probs=38.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      .+||+|||||++|+++|++|++. |.+|+|+|+++.+||.+.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSGGGC
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCceEEEeccCCCCCccc
Confidence            68999999999999999999999 999999999988888764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.33  E-value=7.4e-07  Score=83.78  Aligned_cols=104  Identities=28%  Similarity=0.453  Sum_probs=64.4

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      .|||||||++|+++|..|++. ++.+|+|||+++...         +.      +...++-.-....+.   ...  .  
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~---------~~------p~l~~v~~g~~~~~~---i~~--~--   61 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG---------FT------PAFPHLAMGWRKFED---ISV--P--   61 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE---------CG------GGHHHHHHTCSCGGG---SEE--E--
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc---------cC------ccHHHHhcCCCCHHH---hhh--c--
Confidence            699999999999999999984 258999999975310         00      001111111111111   110  0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                            ++.+.++.|++++.+ +|+.|..++.+|   .+.              ++.++..|++|+|||..
T Consensus        62 ------~~~~~~~~gv~~i~~-~v~~Id~~~~~V---~~~--------------~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           62 ------LAPLLPKFNIEFINE-KAESIDPDANTV---TTQ--------------SGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             ------STTTGGGGTEEEECS-CEEEEETTTTEE---EET--------------TCCEEECSEEEECCCCE
T ss_pred             ------HHHHHHHCCcEEEEe-EEEEEECCCCEE---EEC--------------CCCEEECCEEEEeCCCC
Confidence                  111223568999887 788887666643   332              23689999999999964

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.33  E-value=6.5e-06  Score=79.28  Aligned_cols=101  Identities=20%  Similarity=0.272  Sum_probs=67.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+|+++......                            +           ..
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~l~~----------------------------~-----------d~  250 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGI-GLDVTVMVRSILLRG----------------------------F-----------DQ  250 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCSSTT----------------------------S-----------CH
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEeccccccc----------------------------C-----------CH
Confidence            3699999999999999999999 999999998521100                            0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC----CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++.+.+.+.+. +.||+++.++.++++...+    +.+. +....      .++   ++..++.+|.||+|+|...
T Consensus       251 ~~~~~~~~~l~-~~GV~v~~~~~v~~v~~~~~~~~~~~~-v~~~~------~~g---~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          251 DMANKIGEHME-EHGIKFIRQFVPIKVEQIEAGTPGRLR-VVAQS------TNS---EEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESEEEEEEEEEECCTTCEEE-EEEEE------SSS---SCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCeEEEEEEccCCCCceEE-EEEEE------CCC---cEEEEEECCEEEEecCCcc
Confidence            34445555554 6799999999888886532    3322 22211      010   0224678999999999443

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.33  E-value=1.2e-05  Score=71.74  Aligned_cols=135  Identities=16%  Similarity=0.201  Sum_probs=82.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+.+|..|++. |.+|+|+|+.+.+-..                                        .
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~~~~----------------------------------------~  184 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDELRAQ----------------------------------------R  184 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSCCSC----------------------------------------H
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEecccccCcc----------------------------------------h
Confidence            3799999999999999999999 9999999987532110                                        0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                      .    ..++..++.++.+.....+..+...+...........         ..++...+.++.|+.+.|......     
T Consensus       185 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~d~v~~~~g~~~~~~-----  246 (312)
T 4gcm_A          185 I----LQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTST---------KDGSEETHEADGVFIYIGMKPLTA-----  246 (312)
T ss_dssp             H----HHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEET---------TTCCEEEEECSEEEECSCEEESCG-----
T ss_pred             h----HHHHHHHhcCcceeeecceeeeeccccccccceeeee---------cCCceeEEeeeeEEeecCCCcCch-----
Confidence            0    0112223667888888777777666654443333211         122457899999999999433211     


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccch
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~  294 (321)
                      .+...+..   .....+..       ..+.+...|++|++||.+
T Consensus       247 ~~~~~g~~---~~~G~I~v-------d~~~~Ts~pgIyA~GDv~  280 (312)
T 4gcm_A          247 PFKDLGIT---NDVGYIVT-------KDDMTTSVPGIFAAGDVR  280 (312)
T ss_dssp             GGGGGTCB---CTTSCBCC-------CTTSBCSSTTEEECSTTB
T ss_pred             hHHhccee---cCCCeEee-------CCCCccCCCCEEEEeecC
Confidence            12222210   00011111       123345689999999986

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.31  E-value=3.2e-07  Score=86.49  Aligned_cols=40  Identities=40%  Similarity=0.659  Sum_probs=37.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ++||+|||||++|++||+.|++. |++|+|+|++..+||.+
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCCce
Confidence            58999999999999999999999 99999999998888765

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.31  E-value=4.6e-07  Score=83.61  Aligned_cols=41  Identities=29%  Similarity=0.466  Sum_probs=38.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-CCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~~~gg~~~  131 (321)
                      .+||+|||||++||++|+.|++. |++|+|+|++ ..+||.++
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~-G~~V~VlE~~~~~vGGr~~   85 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRA-GHDVTILEANANRVGGRIK   85 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHT-SCEEEEECSCSSCCBTTCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCcEEEEeccccccCCcee
Confidence            58999999999999999999999 9999999999 88988764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.31  E-value=3.8e-07  Score=84.03  Aligned_cols=40  Identities=40%  Similarity=0.652  Sum_probs=37.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      +||+|||||++|+++|++|++. |.+|+|+|+++.+||.+.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG~~~   41 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNAY   41 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCcceE
Confidence            7999999999999999999999 999999999988988764

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.25  E-value=4e-06  Score=80.39  Aligned_cols=123  Identities=20%  Similarity=0.322  Sum_probs=68.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcC-CCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG-IDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~  168 (321)
                      +..|||||||.+|+.+|..|.+. +++|+|||+++.         ..+..++..-.       .| ++...   .  ...
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~-~~~VtLId~~~~---------~~~~PlL~~va-------~G~l~~~~---i--~~p   99 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTK-KYNVSIISPRSY---------FLFTPLLPSAP-------VGTVDEKS---I--IEP   99 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTT-TCEEEEEESSSE---------EECGGGGGGTT-------TTSSCGGG---G--EEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhC-CCcEEEECCCCC---------cccccchhHHh-------hccccHHH---h--hhh
Confidence            45799999999999999999998 999999999752         11111110000       01 01000   0  001


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec----ccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM----NHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~----~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         + ..+.  ..+..+++++.+ +|++|..+...|.-... .+....    +......++..++..|++|+|+|...
T Consensus       100 ---~-~~~~--~~~~~~v~~~~~-~v~~ID~~~k~V~l~~~-~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~  169 (502)
T 4g6h_A          100 ---I-VNFA--LKKKGNVTYYEA-EATSINPDRNTVTIKSL-SAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEP  169 (502)
T ss_dssp             ---H-HHHH--TTCSSCEEEEEE-EEEEEEGGGTEEEEEEE-EEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEE
T ss_pred             ---H-HHHH--HhhcCCeEEEEE-EEEEEEhhhCEEEEeec-ccceeecccccccccccCCceEEeCCEEEEcCCccc
Confidence               1 1111  112467888876 78888766665432111 100000    00111123457899999999999754

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.23  E-value=8.6e-07  Score=84.71  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=38.0

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~  131 (321)
                      ..+||+|||||++|+++|++|++. | .+|+|+|+.+.+||.+.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~-g~~~v~v~E~~~~~GG~~~   50 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL-GYKNWHLYECNDTPGGLSR   50 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESSSSSSGGGC
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEeCCCCCCCeee
Confidence            368999999999999999999999 7 79999999988887653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.22  E-value=2.5e-06  Score=79.08  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=62.1

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      .|||||||++|+++|.+|++. ++.+|+|||+++....     .....         ..+.. -.+.+.   ..  ..  
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~-----~p~~~---------~v~~g-~~~~~~---~~--~~--   61 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT-----CYMSN---------EVIGG-DRELAS---LR--VG--   61 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC-----STTHH---------HHHHT-SSCGGG---GE--EC--
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC-----ccCHH---------HHhcC-CCCHHH---Hh--hC--
Confidence            699999999999999999874 2579999999753111     00000         01100 011110   00  01  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                            ++.+. ..|++++.+ +|+.|..++..+   .+.              ++.++..|++|+|+|..
T Consensus        62 ------~~~~~-~~gv~~i~~-~v~~id~~~~~v---~~~--------------~g~~i~yd~LviAtG~~  107 (401)
T 3vrd_B           62 ------YDGLR-AHGIQVVHD-SALGIDPDKKLV---KTA--------------GGAEFAYDRCVVAPGID  107 (401)
T ss_dssp             ------SHHHH-HTTCEEECS-CEEEEETTTTEE---EET--------------TSCEEECSEEEECCCEE
T ss_pred             ------HHHHH-HCCCEEEEe-EEEEEEccCcEE---Eec--------------ccceeecceeeeccCCc
Confidence                  11222 358999877 788886655533   232              23689999999999953

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.22  E-value=9.9e-07  Score=84.36  Aligned_cols=40  Identities=33%  Similarity=0.628  Sum_probs=37.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++||++|+.|++. |++|+|+|+.+.+||.+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCce
Confidence            57999999999999999999999 99999999999988754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.21  E-value=2.9e-07  Score=87.33  Aligned_cols=40  Identities=23%  Similarity=0.370  Sum_probs=34.6

Q ss_pred             cccEEEECCChHHHHHHHHhhc-C-C----CCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK-N-P----NIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~-~----G~~V~liEk~~~~gg~  129 (321)
                      .+||+|||||++|+.+|..|++ . +    +.+|+|||+.+.++|.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~   48 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL   48 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCc
Confidence            4799999999999999999988 4 1    6899999998777653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.20  E-value=1.2e-06  Score=81.14  Aligned_cols=41  Identities=29%  Similarity=0.543  Sum_probs=37.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      ++||+|||||++|+++|+.|++. |.+|+|+|+++.+||.+.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG~~~   43 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSY   43 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSGGGC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEEecCCcCCccc
Confidence            47999999999999999999999 999999999988888753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.19  E-value=1.4e-06  Score=82.04  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=37.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ++||+|||+|++|+++|+.|++. |++|+|+|++..+||.+
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg~~   45 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGGES   45 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCccccc
Confidence            68999999999999999999999 99999999998888764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.17  E-value=3.4e-05  Score=75.51  Aligned_cols=99  Identities=16%  Similarity=0.222  Sum_probs=64.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+.+|..|++. |.+|+|+++......                            +           ..
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~l~~----------------------------~-----------d~  326 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASL-GGDVTVMVRSILLRG----------------------------F-----------DQ  326 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCSSTT----------------------------S-----------CH
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCcCcCc----------------------------C-----------CH
Confidence            3799999999999999999999 999999998621100                            0           01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE------C---CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK------G---GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~------~---~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .+...+.+.+. +.|++++.++.+.++...      +   +++. +....          .+|+...+.+|.||+|+|..
T Consensus       327 ~~~~~~~~~l~-~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~----------~~g~~~~~~~D~vi~a~G~~  394 (598)
T 2x8g_A          327 QMAEKVGDYME-NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY----------TDGKKFEEEFETVIFAVGRE  394 (598)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE----------TTSCEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-hCCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe----------CCCcEEeccCCEEEEEeCCc
Confidence            23334444444 579999999888887542      2   3322 22110          11222345699999999944

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.10  E-value=3.7e-05  Score=69.96  Aligned_cols=105  Identities=16%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.....                      .    ++....     ...
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~~~~----------------------~----~d~~~~-----~~~  214 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKN-GSDIALYTSTTGLNDP----------------------D----ADPSVR-----LSP  214 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECC------------------------------------CTTS-----CCH
T ss_pred             CEEEEECCCcCHHHHHHHHHhc-CCeEEEEecCCCCCCC----------------------C----CCCCcc-----CCH
Confidence            4799999999999999999999 9999999997532100                      0    000000     012


Q ss_pred             HHHHHHHHHHHcCCC-cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+.+.+.+. +.| ++++.++.+.++..+++.+ .+...+            |+ ....+|.||+|+|...
T Consensus       215 ~~~~~l~~~l~-~~g~v~~~~~~~v~~i~~~~~~~-~v~~~~------------g~-~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          215 YTRQRLGNVIK-QGARIEMNVHYTVKDIDFNNGQY-HISFDS------------GQ-SVHTPHEPILATGFDA  272 (369)
T ss_dssp             HHHHHHHHHHH-TTCCEEEECSCCEEEEEEETTEE-EEEESS------------SC-CEEESSCCEECCCBCG
T ss_pred             HHHHHHHHHHh-hCCcEEEecCcEEEEEEecCCce-EEEecC------------Ce-EeccCCceEEeeccCC
Confidence            23344444444 676 9999999999987666542 333321            11 2334699999999443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.07  E-value=3.6e-05  Score=73.76  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             cEEEECCChHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD  158 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-------------~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~  158 (321)
                      .++|||||+.|+.+|..|++.             ...+|+|||..+.+-..                             
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~-----------------------------  269 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM-----------------------------  269 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT-----------------------------
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC-----------------------------
Confidence            699999999999999988752             03689999998643110                             


Q ss_pred             cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCC--CceEEEcCeEEE
Q 020815          159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM--DPNVMEAKVVVS  236 (321)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g--~~~~i~a~~VI~  236 (321)
                               ....+.+.+.+.+. +.||+++.++.|+++.  ++.+......           .+|  ...+|.+|.||.
T Consensus       270 ---------~~~~~~~~~~~~L~-~~GV~v~~~~~v~~v~--~~~~~~~~~~-----------~dg~~~~~~i~ad~viw  326 (502)
T 4g6h_A          270 ---------FEKKLSSYAQSHLE-NTSIKVHLRTAVAKVE--EKQLLAKTKH-----------EDGKITEETIPYGTLIW  326 (502)
T ss_dssp             ---------SCHHHHHHHHHHHH-HTTCEEETTEEEEEEC--SSEEEEEEEC-----------TTSCEEEEEEECSEEEE
T ss_pred             ---------CCHHHHHHHHHHHH-hcceeeecCceEEEEe--CCceEEEEEe-----------cCcccceeeeccCEEEE
Confidence                     01234444455554 6799999999999873  4433221111           111  125799999999


Q ss_pred             cCCCCC
Q 020815          237 SCGHDG  242 (321)
Q Consensus       237 AtG~~~  242 (321)
                      |+|-..
T Consensus       327 a~Gv~~  332 (502)
T 4g6h_A          327 ATGNKA  332 (502)
T ss_dssp             CCCEEC
T ss_pred             ccCCcC
Confidence            999544

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.06  E-value=2.3e-06  Score=81.66  Aligned_cols=40  Identities=48%  Similarity=0.741  Sum_probs=37.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++|+++|+.|++. |.+|+|+|+.+.+||..
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGRV   72 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCCCce
Confidence            58999999999999999999999 99999999998888764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.01  E-value=7.6e-05  Score=70.69  Aligned_cols=58  Identities=16%  Similarity=0.165  Sum_probs=37.0

Q ss_pred             CCcEEEcCceEEEEEEEC-C-EEEEEEEeecceeccc--CC-C--CCCCceEEEcCeEEEcCCCCCC
Q 020815          184 PNVKLFNAVAAEDLIVKG-G-RVGGVVTNWALVSMNH--DT-Q--SCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       184 ~gv~i~~~~~v~~l~~~~-~-~v~gv~~~~~~~~~~~--~~-~--~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .|+++++++.++++..++ + ++.+|.+....  ++.  +. .  .+|+..++.+|.||.|+|..+.
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~--l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~  334 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR--LEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSR  334 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEE--EESSGGGCEEEEEEEEEEEECSEEEECCCEECC
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEE--EccccCCCcccCCCceEEEEcCEEEECCCCCCC
Confidence            789999999999987653 5 67777653210  000  00 0  0123368999999999995543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.00  E-value=3.9e-06  Score=79.69  Aligned_cols=40  Identities=40%  Similarity=0.607  Sum_probs=36.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~  130 (321)
                      .+||+|||||++|+++|+.|++. |. +|+|+|++..+||.+
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~~gg~~   44 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGGRM   44 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCceEEEeCCCCCCCce
Confidence            57999999999999999999999 98 899999998888764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.97  E-value=7.5e-06  Score=72.11  Aligned_cols=126  Identities=10%  Similarity=0.113  Sum_probs=78.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-.|+|||+|..|+.+|..|++. | +|.++++....                              +            
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~~------------------------------~------------  176 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIVE------------------------------P------------  176 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTCC------------------------------C------------
T ss_pred             CCEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCCC------------------------------C------------
Confidence            35899999999999999999999 8 99999876420                              0            


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                         ...+.+.+. +.|++++. +.++++..  +.  .+...              ++.++.+|.||+|+|......    
T Consensus       177 ---~~~~~~~l~-~~gv~i~~-~~v~~i~~--~~--~v~~~--------------~g~~~~~D~vi~a~G~~p~~~----  229 (297)
T 3fbs_A          177 ---DADQHALLA-ARGVRVET-TRIREIAG--HA--DVVLA--------------DGRSIALAGLFTQPKLRITVD----  229 (297)
T ss_dssp             ---CHHHHHHHH-HTTCEEEC-SCEEEEET--TE--EEEET--------------TSCEEEESEEEECCEEECCCS----
T ss_pred             ---CHHHHHHHH-HCCcEEEc-ceeeeeec--CC--eEEeC--------------CCCEEEEEEEEEccCcccCch----
Confidence               011223333 57999986 78888743  22  44442              236799999999999543321    


Q ss_pred             hhhhhcCCcccccCCce--eecccccchhhcccccccccccccccchh
Q 020815          250 KRLKSIGMIEEVPGMKA--LDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                       .+.+.+... -.+..+  +..+.       +.+...|++|++|+++.
T Consensus       230 -~~~~~g~~~-~~~~~G~~i~vd~-------~~~t~~~~vya~GD~~~  268 (297)
T 3fbs_A          230 -WIEKLGCAV-EEGPMGSTIVTDP-------MKQTTARGIFACGDVAR  268 (297)
T ss_dssp             -CHHHHTCCE-EEETTEEEECCCT-------TCBCSSTTEEECSGGGC
T ss_pred             -hHHhcCCcc-ccCCCCceEEeCC-------CCccCCCCEEEEeecCC
Confidence             122222200 000011  21221       23356799999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.89  E-value=4.6e-05  Score=72.09  Aligned_cols=106  Identities=14%  Similarity=0.175  Sum_probs=66.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      .-+|+|||||..|+-+|..+.+. |. +|+++++.....   +.                          .        .
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtiv~r~~~~~---~p--------------------------~--------~  305 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQ-GATSVKCLYRRDRKN---MP--------------------------G--------S  305 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCSTT---CS--------------------------S--------C
T ss_pred             CCEEEEECCChhHHHHHHHHHHc-CCCEEEEEEeCCccC---CC--------------------------C--------C
Confidence            35799999999999999999998 77 599999875320   00                          0        0


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~  240 (321)
                      ...     ++.+. +.|+++++++.++++.. ++++.++.+...... .+.++.     .+++..++.+|.||+|+|.
T Consensus       306 ~~e-----~~~~~-~~Gv~~~~~~~~~~i~~-~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~  376 (456)
T 2vdc_G          306 QRE-----VAHAE-EEGVEFIWQAAPEGFTG-DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGF  376 (456)
T ss_dssp             HHH-----HHHHH-HTTCEEECCSSSCCEEE-EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCE
T ss_pred             HHH-----HHHHH-HCCCEEEeCCCceEEeC-CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCC
Confidence            011     12233 46999999998888864 455554444210000 000000     0123468999999999994

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.88  E-value=5.7e-05  Score=78.48  Aligned_cols=104  Identities=18%  Similarity=0.232  Sum_probs=70.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      +|+|||||..|+-+|..|.+. |. +|+|+++.+..    .         +..                        ...
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~-G~~~Vtvv~r~~~~----~---------~~~------------------------~~~  375 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRKGFV----N---------IRA------------------------VPE  375 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCGG----G---------CCS------------------------CHH
T ss_pred             cEEEECCChHHHHHHHHHHHc-CCCEEEEEEecChh----h---------CCC------------------------CHH
Confidence            899999999999999999999 86 89999987410    0         000                        001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC---CCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ---SCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~---~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +     ++.+. +.|++++.++.++++..+++++.++.+....  .+.++.   .+++..++.+|.||+|+|..
T Consensus       376 e-----~~~~~-~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~--~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~  441 (1025)
T 1gte_A          376 E-----VELAK-EEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE--QDETGKWNEDEDQIVHLKADVVISAFGSV  441 (1025)
T ss_dssp             H-----HHHHH-HTTCEEECSEEEEEEEEETTEEEEEEEEEEE--ECTTSCEEEEEEEEEEEECSEEEECSCEE
T ss_pred             H-----HHHHH-HcCCEEEeCCCceEEEccCCeEEEEEEEEeE--EcCCCCcccCCCceEEEECCEEEECCCCC
Confidence            1     12233 4699999999999998778888887764210  000000   01123579999999999954

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.86  E-value=1.2e-05  Score=80.66  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=37.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+.+||.+.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~-G~~Vtlie~~~~~GG~~~  429 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIGGHLN  429 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCeee
Confidence            58999999999999999999999 999999999988887653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.80  E-value=1.5e-05  Score=79.11  Aligned_cols=39  Identities=26%  Similarity=0.563  Sum_probs=36.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      .+||+|||+|++|+++|+.|++. |.+|+|+|+.+.+||.
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg~  145 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGR  145 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCc
Confidence            58999999999999999999999 9999999999888874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.78  E-value=0.00015  Score=68.56  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             CCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC------CCCCCceEEEcCeEEEcCCCCCC
Q 020815          184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT------QSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       184 ~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~------~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .|+++++++.+.++..+ +++.++.+....  ++.++      ..+|+..++.|+.||.|+|..+.
T Consensus       265 ~gv~i~~~~~~~~i~~~-~~v~~v~~~~~~--~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~  327 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGK-RKVERIVLGRNE--LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGV  327 (456)
T ss_dssp             EEEEEECSEEEEEEECS-SSCCEEEEEEEE--EEECSSSSEEEEEEEEEEEEECSEEEECSCEECC
T ss_pred             ceEEEEeCCCCeEEecC-CcEeEEEEEEEE--ecCCCcccccccCCCceEEEEcCEEEEccccccC
Confidence            68999999999998644 455555553210  00000      00123357999999999995543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.76  E-value=3.1e-05  Score=68.91  Aligned_cols=128  Identities=13%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             ccEEEECCCh-HHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGS-AGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~-aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -+++|||||. +++.+|..+.+. +.+|+++++....                                           
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~-~~~v~i~~~~~~~-------------------------------------------  182 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNW-STDLVIATNGNEL-------------------------------------------  182 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTT-CSCEEEECSSCCC-------------------------------------------
T ss_pred             CceeeecCCCchhhhHHHHHHhC-CceEEEEeccccc-------------------------------------------
Confidence            4688888885 567888888888 8999999875321                                           


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                         ...+.+.+. +.|++++.+ .+..+..+++++..|.+.+              +.++.++.+|++.|+..+..    
T Consensus       183 ---~~~~~~~l~-~~g~~~~~~-~v~~~~~~~~~~~~v~~~~--------------g~~i~~~~~vi~~g~~~~~~----  239 (304)
T 4fk1_A          183 ---SQTIMDELS-NKNIPVITE-SIRTLQGEGGYLKKVEFHS--------------GLRIERAGGFIVPTFFRPNQ----  239 (304)
T ss_dssp             ---CHHHHHHHH-TTTCCEECS-CEEEEESGGGCCCEEEETT--------------SCEECCCEEEECCEEECSSC----
T ss_pred             ---hhhhhhhhh-ccceeEeee-eEEEeecCCCeeeeeeccc--------------cceeeecceeeeeccccCCh----
Confidence               012233343 678888877 4666666666777777642              36788999999999766532    


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                       .+.+.+..  +.....+..+       .+.+...|++|++||++.
T Consensus       240 -~~~~~g~~--~~~~G~I~vd-------~~~~Ts~p~IyA~GDv~~  275 (304)
T 4fk1_A          240 -FIEQLGCE--LQSNGTFVID-------DFGRTSEKNIYLAGETTT  275 (304)
T ss_dssp             -HHHHTTCC--CCTTSSSCSS-------TTCBCSSTTEEECSHHHH
T ss_pred             -hhhhcCeE--ECCCCCEEEC-------cCCccCCCCEEEEeccCC
Confidence             23333321  1001111121       234567899999999874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.75  E-value=6.6e-05  Score=77.50  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=69.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|||+.+.+.                                        . .
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~-G~~Vtvv~~~~~~~----------------------------------------~-~  322 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAAT-GGVVAVIDARSSIS----------------------------------------A-A  322 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGG-TCCSEEEESCSSCC----------------------------------------H-H
T ss_pred             CeEEEEcCCHHHHHHHHHHHHc-CCcEEEEECCCccc----------------------------------------h-h
Confidence            4799999999999999999999 99999999975320                                        0 0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                            .+.+. +.||+++.++.++++..+ ++++.+|.+.+.    +..+ .+|+..++.+|.||+|+|-.
T Consensus       323 ------~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~----~~~~-~~G~~~~i~~D~Vv~a~G~~  382 (965)
T 2gag_A          323 ------AAQAV-ADGVQVISGSVVVDTEADENGELSAIVVAEL----DEAR-ELGGTQRFEADVLAVAGGFN  382 (965)
T ss_dssp             ------HHHHH-HTTCCEEETEEEEEEEECTTSCEEEEEEEEE----CTTC-CEEEEEEEECSEEEEECCEE
T ss_pred             ------HHHHH-hCCeEEEeCCEeEEEeccCCCCEEEEEEEec----cccC-CCCceEEEEcCEEEECCCcC
Confidence                  12333 579999999999999764 566767766420    0000 00123689999999999943

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.74  E-value=2.3e-05  Score=79.50  Aligned_cols=39  Identities=26%  Similarity=0.563  Sum_probs=36.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      .+||+|||+|++||++|+.|++. |++|+|+|+...+||.
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~-g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGR  316 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCcCCCc
Confidence            47999999999999999999999 9999999999888874

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.66  E-value=0.00016  Score=68.42  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      -.|+|||+|.+|+-+|..|++. |.+|+|+++.+.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~-g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKY-GAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHh-CCeEEEEEECCC
Confidence            4799999999999999999999 999999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.62  E-value=4.3e-05  Score=74.94  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=38.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|||+|||+|..|...|..|++. |++|++|||++..||.+
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~-g~~vl~id~~~~~gg~~   47 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGGNW   47 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             cCCEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCCcccCcc
Confidence            79999999999999999999999 99999999999999886

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.57  E-value=4.4e-05  Score=73.22  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .+||+||||+|++|+.+|++|++. |.+|+|||++.
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCC
Confidence            369999999999999999999998 99999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.33  E-value=6.4e-05  Score=74.59  Aligned_cols=36  Identities=31%  Similarity=0.571  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC--------CeEEEEeccC-CC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN--------IQIAIIEQSV-SP  126 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--------~~V~liEk~~-~~  126 (321)
                      ..+|+|||||++||++|+.|++. |        .+|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~-g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL-AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CcccccCCCceEEEEeccCccc
Confidence            36899999999999999999998 7        9999999987 77

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.29  E-value=0.0024  Score=61.62  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      .-.|+|||+|..|+.+|..|++. +.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPE-VEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT-CSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            35899999999999999999999 999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.26  E-value=0.00053  Score=68.62  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             ccEEEEC--CChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVG--AGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIG--gG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      -.|+|||  ||..|+.+|..|++. |.+|+|+++.+ +....                     .+..            .
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~-G~~Vtlv~~~~-l~~~~---------------------~~~~------------~  573 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVH-LANYM---------------------HFTL------------E  573 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSC-TTHHH---------------------HHTT------------C
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc-CCEEEEEeccc-ccccc---------------------cccc------------c
Confidence            4799998  999999999999999 99999999975 32100                     0000            0


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEe--eccee-cc---c-CCCCCCCceEEEcCeEEEcCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN--WALVS-MN---H-DTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~--~~~~~-~~---~-~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                          ...+.+.+. +.||+++.++.++++.  ++.+. +...  ++... ..   . .....++..++.+|.||+|+|..
T Consensus       574 ----~~~~~~~l~-~~GV~i~~~~~v~~i~--~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~  645 (729)
T 1o94_A          574 ----YPNMMRRLH-ELHVEELGDHFCSRIE--PGRME-IYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRH  645 (729)
T ss_dssp             ----HHHHHHHHH-HTTCEEECSEEEEEEE--TTEEE-EEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEE
T ss_pred             ----HHHHHHHHH-hCCCEEEcCcEEEEEE--CCeEE-EEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCC
Confidence                123334443 5799999999999885  33322 1111  00000 00   0 00011233569999999999954


Q ss_pred             C
Q 020815          242 G  242 (321)
Q Consensus       242 ~  242 (321)
                      .
T Consensus       646 p  646 (729)
T 1o94_A          646 S  646 (729)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.26  E-value=0.00084  Score=62.88  Aligned_cols=55  Identities=7%  Similarity=0.092  Sum_probs=33.1

Q ss_pred             HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       177 ~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+. +.||+++.++.++++.  ++.+.-....       .++ ..++..++.+|.||+|+|..+
T Consensus       215 ~~~l~-~~gI~~~~~~~v~~v~--~~~v~~~~~~-------~~g-~~~~~~~i~~D~vv~~~g~~~  269 (437)
T 3sx6_A          215 TKGLK-EEGIEAYTNCKVTKVE--DNKMYVTQVD-------EKG-ETIKEMVLPVKFGMMIPAFKG  269 (437)
T ss_dssp             HHHHH-HTTCEEECSEEEEEEE--TTEEEEEEEC-------TTS-CEEEEEEEECSEEEEECCEEC
T ss_pred             HHHHH-HCCCEEEcCCEEEEEE--CCeEEEEecc-------cCC-ccccceEEEEeEEEEcCCCcC
Confidence            33343 6799999999998884  4433211110       000 001146899999999999544

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.25  E-value=0.0008  Score=60.42  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|||+|..|+.+|..|++. + +|+++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            5899999999999999999998 7 699998863

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.03  E-value=0.00084  Score=64.88  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      -.|+|||+|..|+.+|..|++. +.+|+|+++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAET-AKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-BSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhh-CCEEEEEEcCCC
Confidence            4799999999999999999999 999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.98  E-value=0.0012  Score=61.98  Aligned_cols=34  Identities=21%  Similarity=0.109  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~  124 (321)
                      .-+|+|||+|.+|+-+|..|++. +.+ |+|+++..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHH-hCCcEEEEeCCC
Confidence            35899999999999999999999 888 99999874

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.87  E-value=0.002  Score=59.53  Aligned_cols=51  Identities=14%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +...+.+.+. +.||+++.+++++++.  .+.   |.+.              ++.++.+|.||+|+|..+
T Consensus       220 ~~~~~~~~l~-~~gV~~~~~~~v~~i~--~~~---v~~~--------------~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          220 SRKAVASIYN-QLGIKLVHNFKIKEIR--EHE---IVDE--------------KGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHHHH-HHTCEEECSCCEEEEC--SSE---EEET--------------TSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHH-HCCCEEEcCCceEEEC--CCe---EEEC--------------CCCEEeeeEEEECCCCCc
Confidence            3444444444 5799999999998884  332   4442              236899999999999544

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.78  E-value=0.0078  Score=58.11  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      .-.|+|||+|..|+.+|..|++. +.+|+++++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQ-AEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            35899999999999999999999 999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.77  E-value=0.0058  Score=60.44  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=25.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAI  119 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~l  119 (321)
                      .-.|+|||||..|+.+|..|++. |.+|.+
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~-G~~vtv  522 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQP-GESTSQ  522 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCC-SSCGGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhc-CCCccc
Confidence            35899999999999999999998 876653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.30  E-value=0.018  Score=45.58  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|||+|..|...|..|.+. |.+|++++++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            5799999999999999999999 99999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.23  E-value=0.029  Score=53.23  Aligned_cols=45  Identities=9%  Similarity=0.114  Sum_probs=33.2

Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      +.|++++.++.++++..+ +++.++...              ++.++.+|.||+|+|-..
T Consensus       269 ~~GV~v~~~~~v~~i~~~-~~v~~v~~~--------------~g~~i~aD~Vv~a~G~~p  313 (493)
T 1y56_A          269 RWGIDYVHIPNVKRVEGN-EKVERVIDM--------------NNHEYKVDALIFADGRRP  313 (493)
T ss_dssp             HHTCEEEECSSEEEEECS-SSCCEEEET--------------TCCEEECSEEEECCCEEE
T ss_pred             hCCcEEEeCCeeEEEecC-CceEEEEeC--------------CCeEEEeCEEEECCCcCc
Confidence            469999999999998744 345455542              236899999999999443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.12  E-value=0.023  Score=43.96  Aligned_cols=32  Identities=22%  Similarity=0.462  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .++|+|+|..|...|..|.+. |.+|+++|+++
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            699999999999999999999 99999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.07  E-value=0.029  Score=43.50  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|||.|..|...|..|.+. |.+|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            4799999999999999999999 99999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=95.00  E-value=0.16  Score=48.76  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      -.|+|||+|..|+..|..|++. +.+|+++++.+.
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~-~~~vtv~~r~~~  220 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTPH  220 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             CEEEEECCCccHHHHHHHHhhc-CceEEEEEcCCc
Confidence            5799999999999999999998 899999998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.87  E-value=0.029  Score=42.95  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|||+|..|...|..|.+. |.+|+++|+..
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            3699999999999999999999 99999999863

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.63  E-value=0.029  Score=52.57  Aligned_cols=99  Identities=12%  Similarity=0.148  Sum_probs=71.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~---------------------------~-----------~~  208 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAPLPS---------------------------F-----------DP  208 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCEEEEEEeCCchhhh---------------------------h-----------hH
Confidence            4899999999999999999999 9999999997532110                           0           01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .+.+.+.+.+. +.|++++.+++++++..+++....+.+.+              +.++.+|.||+|+|..+.
T Consensus       209 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~--------------g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          209 MISETLVEVMN-AEGPQLHTNAIPKAVVKNTDGSLTLELED--------------GRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             HHHHHHHHHHH-HHSCEEECSCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCcEEEEEECC--------------CcEEEcCEEEECCCCCcC
Confidence            23344455554 57999999999999987654323344421              257999999999995443

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.53  E-value=0.26  Score=46.74  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~  124 (321)
                      ..|+|||+|.+|.-++..|++. ++.+|.++-+.+
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            4799999999999999999863 378999998875

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.46  E-value=0.045  Score=42.98  Aligned_cols=32  Identities=13%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.++|+|+|..|...|..|.+. |.+|+++|+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            4699999999999999999999 9999999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.34  E-value=0.042  Score=40.61  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~  124 (321)
                      ..|+|+|+|..|..++..|.+. | .+|.++++..
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCH
Confidence            3699999999999999999999 8 8999999863

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.21  E-value=0.041  Score=42.19  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .|+|+|+|..|...|..|.+. |.+|+++|+.
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~-g~~v~~~d~~   38 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDIN   38 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            599999999999999999999 9999999985

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=93.91  E-value=0.05  Score=51.60  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=72.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  215 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRL-GVIVKVFGRSGSVANL--------------------------------------QDE  215 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHT-TCEEEEECCTTCCTTC--------------------------------------CCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCccccc--------------------------------------CCH
Confidence            4899999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+.+.+.+.+. +. ++++.++.++++..+++.+. +....          .+|+..++.+|.||+|+|...
T Consensus       216 ~~~~~l~~~l~-~~-V~i~~~~~v~~i~~~~~~v~-v~~~~----------~~G~~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          216 EMKRYAEKTFN-EE-FYFDAKARVISTIEKEDAVE-VIYFD----------KSGQKTTESFQYVLAATGRKA  274 (492)
T ss_dssp             HHHHHHHHHHH-TT-SEEETTCEEEEEEECSSSEE-EEEEC----------TTCCEEEEEESEEEECSCCEE
T ss_pred             HHHHHHHHHHh-hC-cEEEECCEEEEEEEcCCEEE-EEEEe----------CCCceEEEECCEEEEeeCCcc
Confidence            34455555555 45 99999999999987776544 33210          112336899999999999543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.82  E-value=0.059  Score=50.17  Aligned_cols=58  Identities=14%  Similarity=0.113  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ...+.+.|.+.+. +.|++|+.+++|++|..+++++.+|.+.               +.+++||.||+|+|...
T Consensus       233 ~~~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~v~~v~~~---------------g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          233 LGELPQGFARLSA-IYGGTYMLNKPVDDIIMENGKVVGVKSE---------------GEVARCKQLICDPSYVP  290 (433)
T ss_dssp             TTHHHHHHHHHHH-HHTCCCBCSCCCCEEEEETTEEEEEEET---------------TEEEECSEEEECGGGCG
T ss_pred             HHHHHHHHHHHHH-HcCCEEECCCEEEEEEEeCCEEEEEEEC---------------CeEEECCEEEECCCCCc
Confidence            3567777777765 5699999999999999999988887752               36899999999999553

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=93.47  E-value=0.12  Score=49.23  Aligned_cols=56  Identities=11%  Similarity=0.001  Sum_probs=42.0

Q ss_pred             HHHHHcCCCcEEEcCceEEEEEEEC-C-EEEEEEEeecceecccCCCCCC---CceEEEcCeEEEcCCCCC
Q 020815          177 MSKLLARPNVKLFNAVAAEDLIVKG-G-RVGGVVTNWALVSMNHDTQSCM---DPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       177 ~~~~~~~~gv~i~~~~~v~~l~~~~-~-~v~gv~~~~~~~~~~~~~~~~g---~~~~i~a~~VI~AtG~~~  242 (321)
                      +..+.+..|++|+.++.|++|+.++ + +++||++..          .++   ...+++|+.||+|+|+++
T Consensus       233 l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~----------~~g~~~~~~~~~A~~VIlaaGa~~  293 (507)
T 1coy_A          233 LAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQID----------EQGNVVATKVVTADRVFFAAGSVG  293 (507)
T ss_dssp             HHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEEC----------TTSCEEEEEEEEEEEEEECSHHHH
T ss_pred             HHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeC----------CCCcccccEEEEeCEEEEccCccC
Confidence            4444446689999999999999986 4 799998742          011   136799999999999553

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.44  E-value=0.07  Score=50.06  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|.|||.|.+|+++|..|.+. |++|.+.|...
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~-G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKL-GAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCEEEEEeCCc
Confidence            4799999999999999999999 99999999854

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.44  E-value=0.057  Score=48.25  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|.|||+|..|...|..++.. |++|+|+|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~-G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASG-GFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            4799999999999999999999 99999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=93.33  E-value=0.12  Score=47.30  Aligned_cols=45  Identities=11%  Similarity=-0.017  Sum_probs=32.5

Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      ++.+++++.++.+..+..+++.. .+.+.              ++.++.+|.||+|.|..
T Consensus       213 ~~~gi~v~~~~~v~~v~~~~~~~-~v~~~--------------~g~~i~~D~vi~~~g~~  257 (401)
T 3vrd_B          213 ENALIEWHPGPDAAVVKTDTEAM-TVETS--------------FGETFKAAVINLIPPQR  257 (401)
T ss_dssp             TTCSEEEECTTTTCEEEEETTTT-EEEET--------------TSCEEECSEEEECCCEE
T ss_pred             HhcCcEEEeCceEEEEEecccce-EEEcC--------------CCcEEEeeEEEEecCcC
Confidence            46899999999888887665422 23332              23689999999999843

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=92.79  E-value=0.1  Score=48.03  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      -.++|||+|..|+.+|..|.+. |.+|+++|+.+.+
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKF-GVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCch
Confidence            4799999999999999999999 9999999998654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.79  E-value=0.09  Score=44.41  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .-.|+|||||..|...+..|.+. |.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~-GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQE-GAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGG-CCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCC
Confidence            45899999999999999999999 9999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.56  E-value=0.091  Score=43.87  Aligned_cols=32  Identities=16%  Similarity=0.333  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|||+|..|...|..|.+. |.+|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-KYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            489999999999999999999 99999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.48  E-value=0.077  Score=46.27  Aligned_cols=34  Identities=21%  Similarity=0.598  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||||-.|...+..|.+. |.+|+|+++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~-Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCC
Confidence            35799999999999999999999 99999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.40  E-value=0.11  Score=46.54  Aligned_cols=33  Identities=15%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|++. |+ +|.|+|...
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~-g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCh
Confidence            4799999999999999999998 87 999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.03  E-value=0.11  Score=44.64  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence            35899999999999999999998 86 899999874

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.01  E-value=0.14  Score=45.53  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh
Confidence            699999999999999999999 99999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.89  E-value=0.14  Score=45.03  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|+++|++.
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999863

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.88  E-value=0.15  Score=44.60  Aligned_cols=32  Identities=19%  Similarity=0.397  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |++|+++|++.
T Consensus         6 kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            699999999999999999999 99999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=91.81  E-value=0.15  Score=46.99  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            46899999999999999999999 99999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=91.59  E-value=0.16  Score=48.41  Aligned_cols=101  Identities=13%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~~~  255 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPLKLI--------------------------------------KDN  255 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTTTC--------------------------------------CSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccccc--------------------------------------ccH
Confidence            5899999999999999999999 9999999997532110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCce-EEEcCeEEEcCCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSSCGHDGP  243 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~a~~VI~AtG~~~~  243 (321)
                      .+...+.+.+. +.|++++.+++|+++..++ +++.++.+..          .  ++. ++.||.||+|+|....
T Consensus       256 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~----------~--~G~~~i~aD~Vv~A~G~~p~  317 (523)
T 1mo9_A          256 ETRAYVLDRMK-EQGMEIISGSNVTRIEEDANGRVQAVVAMT----------P--NGEMRIETDFVFLGLGEQPR  317 (523)
T ss_dssp             HHHHHHHHHHH-HTTCEEESSCEEEEEEECTTSBEEEEEEEE----------T--TEEEEEECSCEEECCCCEEC
T ss_pred             HHHHHHHHHHH-hCCcEEEECCEEEEEEEcCCCceEEEEEEE----------C--CCcEEEEcCEEEECcCCccC
Confidence            34455555555 5799999999999998753 4443332211          0  124 7999999999996544

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.51  E-value=0.12  Score=48.17  Aligned_cols=34  Identities=26%  Similarity=0.611  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      .|+|||.|.+|+++|..|.+. |.+|++.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~-G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTT-TCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhC-CCEEEEEECCCCc
Confidence            699999999999999999999 9999999986543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.45  E-value=0.13  Score=39.90  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|+|||+|..|...|..|.+. |.+|.++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~-g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYP-QYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTT-TCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            34799999999999999999998 8999999986

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=91.43  E-value=0.85  Score=42.12  Aligned_cols=50  Identities=18%  Similarity=0.209  Sum_probs=34.1

Q ss_pred             HHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       178 ~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++..++.||+++.++.|+++  +++++   ....          .+++..++.+|.||+|+|..+
T Consensus       207 ~~~l~~~GV~~~~~~~v~~v--~~~~~---~~~~----------~~g~~~~i~~d~vi~~~G~~~  256 (430)
T 3hyw_A          207 EDLFAERNIDWIANVAVKAI--EPDKV---IYED----------LNGNTHEVPAKFTMFMPSFQG  256 (430)
T ss_dssp             HHHHHHTTCEEECSCEEEEE--CSSEE---EEEC----------TTSCEEEEECSEEEEECEEEC
T ss_pred             HHHHHhCCeEEEeCceEEEE--eCCce---EEEe----------eCCCceEeecceEEEeccCCC
Confidence            33334689999999999987  34432   2221          123457899999999999554

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.39  E-value=0.14  Score=45.27  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRS-GEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-SCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCc
Confidence            699999999999999999999 99999999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.30  E-value=0.16  Score=46.44  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      .+..|||+|+|.+|+.+|..|... |. +|.++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~-Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAA-GATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHc-CCCeEEEEECCC
Confidence            467999999999999999999988 88 999999974

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.17  E-value=0.22  Score=44.57  Aligned_cols=33  Identities=18%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|++. |+ +|.|+|...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~-g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK-DLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCH
Confidence            4799999999999999999998 88 999999864

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=91.12  E-value=0.19  Score=47.63  Aligned_cols=97  Identities=16%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+..|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  223 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTEL-GVPVTVVASQDHVLPY--------------------------------------EDA  223 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHT-TCCEEEECSSSSSSCC--------------------------------------SSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            4799999999999999999999 9999999997542110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+...+.+.+. +.|++++.+++|+++..+++.+ .+...              ++.++.+|.||+|+|...
T Consensus       224 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~v-~v~~~--------------~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          224 DAALVLEESFA-ERGVRLFKNARAASVTRTGAGV-LVTMT--------------DGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             HHHHHHHHHHH-HTTCEEETTCCEEEEEECSSSE-EEEET--------------TSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCEE-EEEEC--------------CCcEEEcCEEEECCCCCc
Confidence            34445555554 6799999999999998766543 23321              236799999999999544

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.03  E-value=0.2  Score=44.42  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      ..|+|||+|..|...|..|++. |.  +|.++|+..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            3699999999999999999998 88  999999863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.80  E-value=0.19  Score=47.28  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|+|+|-.|...|..|.+. |.+|++||+++
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~-~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGE-NNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCST-TEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            699999999999999999999 99999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.79  E-value=0.22  Score=45.19  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|+|+|.+|..++..|... |.+|+++++..
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            5799999999999999999999 89999999863

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=90.76  E-value=0.16  Score=46.30  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRL-GAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45899999999999999999988 99999999874

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=90.64  E-value=0.24  Score=42.95  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence            489999999999999999999 99999999865

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=90.56  E-value=0.27  Score=40.75  Aligned_cols=34  Identities=9%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ..|.|||+|..|...|..|++. |.+|.++++...
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~-g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIA-GHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            4799999999999999999999 999999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.49  E-value=0.23  Score=45.83  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            35799999999999999999888 99999999864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.39  E-value=0.25  Score=44.19  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .|.|||+|..|...|..|++. |.+|.++++.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~-g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALA-GEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHT-TCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCEEEEEECh
Confidence            699999999999999999999 9999999984

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=90.32  E-value=0.23  Score=46.71  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=71.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||+|..|+.+|..|++. |.+|+++++......                            +           ..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~l~~----------------------------~-----------d~  227 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGL-GYEPTVMVRSIVLRG----------------------------F-----------DQ  227 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCSSTT----------------------------S-----------CH
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCcc----------------------------c-----------CH
Confidence            4799999999999999999999 999999998521100                            0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ++.+.+.+.+. +.|++++.++.+.++..+++....|...++         .+++..++.+|.||+|+|...
T Consensus       228 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~---------~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          228 QMAELVAASME-ERGIPFLRKTVPLSVEKQDDGKLLVKYKNV---------ETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHHHHH-HTTCCEEETEEEEEEEECTTSCEEEEEEET---------TTCCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCcEEEEEecC---------CCCceeEEEcCEEEECccccc
Confidence            34445555554 679999999999999875443223444321         112345899999999999543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.20  E-value=0.23  Score=45.31  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      .+..|+|+|+|.+|..+|..|... |. +|.++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~-G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECC
Confidence            467999999999999999999998 87 89999997

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.19  E-value=0.26  Score=43.54  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      .|.|||+|..|...|+.|+.. |.  +|.++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR-GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCH
Confidence            489999999999999999998 88  999999753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=90.15  E-value=0.27  Score=46.32  Aligned_cols=97  Identities=11%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||+|..|+..|..|++. |.+|+++++.+.+...                           +           ..
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~---------------------------~-----------~~  232 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGL-GVKTTLLHRGDLILRN---------------------------F-----------DY  232 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCccccc---------------------------c-----------CH
Confidence            4899999999999999999999 9999999997532100                           0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      .+...+.+.+. +.|++++.++.|+++..+++.+ .+.+.              ++.++.+|.||+|+|...
T Consensus       233 ~~~~~l~~~l~-~~Gv~i~~~~~V~~i~~~~~~v-~v~~~--------------~g~~i~aD~Vi~A~G~~p  288 (484)
T 3o0h_A          233 DLRQLLNDAMV-AKGISIIYEATVSQVQSTENCY-NVVLT--------------NGQTICADRVMLATGRVP  288 (484)
T ss_dssp             HHHHHHHHHHH-HHTCEEESSCCEEEEEECSSSE-EEEET--------------TSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEeeCCEE-EEEEC--------------CCcEEEcCEEEEeeCCCc
Confidence            33444555554 5799999999999998776654 44442              125799999999999544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.14  E-value=0.19  Score=40.51  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|||+|..|...|..|.+..|.+|+++|++.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999873168999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.13  E-value=0.27  Score=42.59  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..++|+|+|.+|..+|..|++. |.+|+++.+.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~-G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSL-DCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCEEEEEECC
Confidence            4799999999999999999999 8999999886

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.08  E-value=0.27  Score=45.01  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||+|.+|+.++..|... |.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45899999999999999999888 99999999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.07  E-value=0.26  Score=46.51  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|.|||.|..|+..|..|++. |.+|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~-G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI-GHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            35899999999999999999999 99999999753

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=90.04  E-value=0.28  Score=45.89  Aligned_cols=98  Identities=7%  Similarity=0.083  Sum_probs=72.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-.++|||+|..|+..|..|++. |.+|+++++.+.+...                                      ..
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~-g~~Vt~v~~~~~~l~~--------------------------------------~~  210 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGL-GVKTTLIYRGKEILSR--------------------------------------FD  210 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cC
Confidence            35899999999999999999999 9999999997532100                                      01


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEE-EeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV-TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~-~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      ..+.+.+.+.+. +.|++++.++.|+++..+++.+..|. +.              ++. +.+|.||+|+|...
T Consensus       211 ~~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~--------------~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          211 QDMRRGLHAAME-EKGIRILCEDIIQSVSADADGRRVATTMK--------------HGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECSCCEEEEEECTTSCEEEEESS--------------SCE-EEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHH-HCCCEEECCCEEEEEEEcCCCEEEEEEcC--------------CCe-EEeCEEEEeeCccc
Confidence            234455555554 67999999999999987655433444 32              124 99999999999543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=89.99  E-value=0.37  Score=45.21  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ..|.|||+|..|...|..|++. |++|+++|+...
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLA-GIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEECcHH
Confidence            3699999999999999999999 999999998753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.85  E-value=0.28  Score=42.93  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.+++++.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            699999999999999999999 99999999853

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.66  E-value=0.31  Score=44.31  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|+|+|..|..+|..|... |.+|+++++..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGM-GAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            5799999999999999999999 99999999863

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.56  E-value=0.2  Score=43.97  Aligned_cols=32  Identities=28%  Similarity=0.563  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~-g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQS-LPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-CTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEEecc
Confidence            699999999999999999998 89999999863

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.52  E-value=0.34  Score=45.27  Aligned_cols=35  Identities=14%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ...+.|||.|..|+..|..|++. |.+|++++++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            46899999999999999999999 999999998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.44  E-value=0.31  Score=45.06  Aligned_cols=33  Identities=15%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|||||.|..|...|..|.+. |.+|++||+++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            3699999999999999999999 99999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.41  E-value=0.32  Score=45.67  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |++|+++|+..
T Consensus        39 kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARV-GISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=89.32  E-value=0.44  Score=42.26  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~  124 (321)
                      ..|.|||.|..|...|..|++. | .+|.++++..
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            3699999999999999999999 9 9999999874

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.17  E-value=0.4  Score=41.63  Aligned_cols=34  Identities=26%  Similarity=0.534  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...++|||+|.+|.++|+.|.+. |.+|.|+.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~-G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ-GLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            35799999999999999999999 89999998863

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=89.17  E-value=0.32  Score=45.51  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|+..|..|++. |.+|+++|++.
T Consensus         4 kI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAEL-GANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CCEEEEEECCH
Confidence            699999999999999999999 99999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=89.14  E-value=0.39  Score=42.38  Aligned_cols=31  Identities=32%  Similarity=0.647  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|||+|..|...|..|+ . |.+|.++++..
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~-g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-L-YHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh-c-CCceEEEECCH
Confidence            6999999999999999999 8 99999999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=89.08  E-value=0.37  Score=43.38  Aligned_cols=33  Identities=18%  Similarity=0.472  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      .|+|||||..|..+++.+.+. |++|+++|.++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~-G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKA-GMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            499999999999999999999 999999997653

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=89.07  E-value=0.29  Score=43.44  Aligned_cols=33  Identities=24%  Similarity=0.559  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|++. |. +|.++|...
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~-g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD-NLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCc
Confidence            3699999999999999999998 88 999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=89.05  E-value=0.38  Score=42.93  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|+.. |+ +|.|+|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~-g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCH
Confidence            3699999999999999999998 87 999999764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.86  E-value=0.38  Score=43.87  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||+|..|..+|..|... |.+|+++++..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM-GATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            35799999999999999999998 99999999863

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.67  E-value=0.4  Score=42.91  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..|.|||+|..|...|..|++. |.+|.++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            3699999999999999999999 9999999985

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.59  E-value=0.44  Score=41.95  Aligned_cols=33  Identities=18%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|||+|.+|..+|..|.+. |. +|+|+.+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~-G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLST-AAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            34799999999999999999999 87 89999886

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.54  E-value=0.37  Score=42.85  Aligned_cols=32  Identities=34%  Similarity=0.670  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ..|+|||+|..|...|+.|+.. +.  .+.|+|..
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~-~~~~ei~L~Di~   40 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQ-SIVDELVIIDLD   40 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-CSCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCC
Confidence            5899999999999999999987 64  89999864

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=88.44  E-value=0.51  Score=41.93  Aligned_cols=32  Identities=25%  Similarity=0.587  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      -.|.|||+|..|...|+.|+.. |+ +|.|+|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~-g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK-ELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEecc
Confidence            4799999999999999999998 88 99999987

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.40  E-value=0.3  Score=41.05  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.++|+|+|..|...|..|.+. |. |+++|+++
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~-g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGS-EV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTS-EE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhC-Ce-EEEEECCH
Confidence            4799999999999999999998 89 99999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.33  E-value=0.41  Score=42.43  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..|.|||+|..|...|..|++. |.+|.++ ++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARA-GHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-CCeEEEE-Ec
Confidence            4799999999999999999999 9999999 54

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.26  E-value=0.44  Score=43.10  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|.+.|..|++. |.+|.++++.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARK-GQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTT-TCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4799999999999999999999 99999999863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.14  E-value=0.43  Score=44.97  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.++|+|+|..|..+|..|+.. |.+|+++|+.+
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~-GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQA-GARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            35799999999999999999999 99999999753

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=88.13  E-value=0.46  Score=42.35  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      +..|.|||+|..|...|..|++. |.+|.++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~-G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHEN-GEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            45899999999999999999999 9999999885

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=88.11  E-value=0.46  Score=41.45  Aligned_cols=31  Identities=39%  Similarity=0.699  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.++|+|+|..|.++|..|++. | +|+++.+.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~-G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKD-N-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHC-C-CEEEEECC
Confidence            4699999999999999999999 8 99999876

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.03  E-value=0.43  Score=40.92  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~-Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA-GVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT-TCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            46899999999999999999999 76 788998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=87.95  E-value=0.4  Score=41.70  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+ |..|...|..|.+. |.+|.++++..
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDS-AHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            6999999 99999999999999 99999999763

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=87.94  E-value=0.35  Score=41.93  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..++|+|+|.+|..+|..|++. |.+|+|+.|.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~-G~~v~v~~R~  151 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQA-QQNIVLANRT  151 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            4799999999999999999999 8999999886

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.93  E-value=0.51  Score=41.47  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +-.|.|||+|..|...|..|+ . |++|+++|+.+
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCH
Confidence            458999999999999999999 8 99999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=87.82  E-value=0.46  Score=44.54  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|||+|..|...+..|.+. |.+|+|+++.
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~-ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-cCEEEEEcCC
Confidence            4799999999999999999999 9999999975

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=87.80  E-value=0.51  Score=41.92  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|+|+|.+|.++|+.|++. |. +|.|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~-Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALD-GVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHC-CCCEEEEEECC
Confidence            35799999999999999999999 88 89999886

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=87.74  E-value=0.57  Score=41.82  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..|.|||+|..|.+.|+.|+.. ++ ++.|+|...
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~-~~~~v~L~Di~~   41 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLK-ELGDVVLFDIAE   41 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCc
Confidence            4799999999999999999998 88 999999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=87.70  E-value=0.52  Score=42.28  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~a-GVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCE
Confidence            46899999999999999999999 75 688999864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=87.67  E-value=1.1  Score=43.78  Aligned_cols=56  Identities=7%  Similarity=-0.061  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ...+.+.|.+.+. ..|.+|+.++.|.+|..++  +++.||...              ++.+++||.||....
T Consensus       377 ~g~L~qaL~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~--------------~Ge~i~A~~VVs~~~  434 (650)
T 1vg0_A          377 QGELPQCFCRMCA-VFGGIYCLRHSVQCLVVDKESRKCKAVIDQ--------------FGQRIISKHFIIEDS  434 (650)
T ss_dssp             TTHHHHHHHHHHH-HTTCEEESSCCEEEEEEETTTCCEEEEEET--------------TSCEEECSEEEEEGG
T ss_pred             hhHHHHHHHHHHH-HcCCEEEeCCEeeEEEEeCCCCeEEEEEeC--------------CCCEEEcCEEEEChh
Confidence            3566677777665 6899999999999999987  889998853              237899999988444

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.60  E-value=0.54  Score=41.58  Aligned_cols=33  Identities=21%  Similarity=0.543  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCC-CCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++.+ +.+|.++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4899999999999999999841 68999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=87.52  E-value=0.41  Score=44.52  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|+..|..|++. |.+|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            489999999999999999999 99999999853

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=87.50  E-value=0.5  Score=41.98  Aligned_cols=33  Identities=36%  Similarity=0.621  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      ..|.|||+|..|.+.|+.|+.. +.  ++.++|...
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~-~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCCEEEEEeCCc
Confidence            4799999999999999999886 54  899999753

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=87.49  E-value=0.54  Score=41.57  Aligned_cols=32  Identities=22%  Similarity=0.426  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      .|.|||+|..|...|+.|+.. |. +|.++|...
T Consensus         4 kI~VIGaG~vG~~~a~~la~~-g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCeEEEEeCCc
Confidence            699999999999999999998 76 899999753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.47  E-value=0.62  Score=38.29  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             cEEEEC-CChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIG-gG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+||| +|..|...|..|++. |.+|.++++..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            489999 999999999999999 99999999863

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=87.44  E-value=0.54  Score=41.09  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|+|+|.+|.++++.|++. |. +|.|+.|.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~-G~~~v~i~~R~  160 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD  160 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEECC
Confidence            45799999999999999999999 88 69999886

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=87.43  E-value=0.51  Score=42.03  Aligned_cols=33  Identities=9%  Similarity=0.193  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHH-HHHHhhcCCCCeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLS-CAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~-aA~~La~~~G~~V~liEk~~~  125 (321)
                      .|.|||.|.+|++ +|..|.+. |++|.+.|+...
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~-G~~V~~~D~~~~   39 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEA-GFEVSGCDAKMY   39 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHT-TCEEEEEESSCC
T ss_pred             EEEEEEECHHHHHHHHHHHHhC-CCEEEEEcCCCC
Confidence            6999999999996 78888899 999999998653

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=87.34  E-value=0.43  Score=41.92  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~a-GVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRC-GIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            46899999999999999999998 75 789999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=87.15  E-value=0.56  Score=40.78  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|...|..|++. |.+|.++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKA-GCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            589999999999999999999 99999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.13  E-value=0.61  Score=39.59  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|.|||+|..|...|..|++. |.+|.++++..
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~-G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADL-GHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            35799999999999999999999 99999999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=87.07  E-value=0.56  Score=41.38  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||.|..|...|..|++. |.+|.++++..
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKN-GFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4799999999999999999999 99999999865

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=87.06  E-value=0.54  Score=41.18  Aligned_cols=34  Identities=12%  Similarity=0.229  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ..|.|||.|..|...|..|++. |.+|.+++++..
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~   49 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIE   49 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence            4799999999999999999999 999999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=87.04  E-value=0.55  Score=41.66  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||.|..|...|..|++. |.+|.++++..
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEA-GYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhC-CCeEEEEcCCH
Confidence            4799999999999999999999 99999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=87.04  E-value=0.77  Score=45.30  Aligned_cols=99  Identities=17%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             ccEEEEC--CChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVVG--AGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvIIG--gG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      -+|+|||  +|..|+.+|..|++. |.+|+++++.+.+.....      .                              
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~-g~~Vtlv~~~~~l~~~~~------~------------------------------  566 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQK-GYEVSIVTPGAQVSSWTN------N------------------------------  566 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHT-TCEEEEEESSSSTTGGGG------G------------------------------
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhC-CCeeEEEecccccccccc------c------------------------------
Confidence            4699999  999999999999999 999999998764321100      0                              


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       ..+...+.+.+. +.|++++.+++|+++.  ++.+. +...           .++++.++.+|.||+|+|...
T Consensus       567 -~~~~~~l~~~l~-~~GV~i~~~~~V~~i~--~~~~~-v~~~-----------~~~~~~~i~aD~VV~A~G~~p  624 (690)
T 3k30_A          567 -TFEVNRIQRRLI-ENGVARVTDHAVVAVG--AGGVT-VRDT-----------YASIERELECDAVVMVTARLP  624 (690)
T ss_dssp             -GTCHHHHHHHHH-HTTCEEEESEEEEEEE--TTEEE-EEET-----------TTCCEEEEECSEEEEESCEEE
T ss_pred             -chhHHHHHHHHH-HCCCEEEcCcEEEEEE--CCeEE-EEEc-----------cCCeEEEEECCEEEECCCCCC
Confidence             001233344444 5799999999999885  33221 2211           112346899999999999443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=87.01  E-value=0.63  Score=38.66  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|.+. |.+|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~-g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS-GFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3699999999999999999998 89999999863

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=87.00  E-value=0.51  Score=44.50  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~  125 (321)
                      ..|.|||+|..|+..|..|++.+|. +|+++|++..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3799999999999999999997578 9999998754

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=86.97  E-value=0.51  Score=41.13  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...++|||+|.+|.++|+.|.+. |. +|.|+.|..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKI-VRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTT-CCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            35799999999999999999999 87 899998864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=86.81  E-value=0.65  Score=41.28  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      ..|.|||+|..|...|+.|+.. +.  .+.++|...
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~-~~~~ev~L~Di~~   42 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALR-QTANELVLIDVFK   42 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            5799999999999999999998 77  899999764

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=86.75  E-value=0.69  Score=43.16  Aligned_cols=55  Identities=20%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHcC-------CCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          170 ALFTSTIMSKLLAR-------PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       170 ~~~~~~l~~~~~~~-------~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ..+.+.|.+.+.+.       .+.+|+.+++|++|..+++.+. |.+.              ++.+++||+||+|++
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~-v~~~--------------~g~~~~ad~vI~a~~  267 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVT-VKTE--------------DNSVYSADYVMVSAS  267 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEE-EEET--------------TSCEEEESEEEECSC
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEE-EEEC--------------CCCEEEcCEEEEecC
Confidence            35566666655422       2678999999999998877655 5543              225799999999999

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=86.69  E-value=0.48  Score=42.13  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.  +|.++|+..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCCh
Confidence            489999999999999999998 88  999999863

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=86.63  E-value=0.62  Score=40.91  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||.|..|...|..|++. |.+|.++++..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRA-GLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            4799999999999999999999 99999999864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=86.57  E-value=0.75  Score=40.96  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ..|.|||+|..|.+.|+.|+.. ++ ++.|+|...
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~-~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIK-QLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCh
Confidence            4699999999999999999998 77 999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=86.55  E-value=0.72  Score=40.60  Aligned_cols=33  Identities=36%  Similarity=0.418  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||.|..|...|..|++. |.+|.++++..
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQ-GKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999864

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=86.55  E-value=0.52  Score=43.95  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..+.|||.|..|+..|..|++. |.+|+.+|.+.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~-G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALL-GHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            5799999999999999999999 99999999753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=86.55  E-value=0.55  Score=44.33  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |++|+++|++.
T Consensus         7 kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASH-GHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            699999999999999999999 99999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=86.51  E-value=0.48  Score=42.74  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-EEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            699999999999999999999 99999998753

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=86.48  E-value=0.67  Score=39.78  Aligned_cols=31  Identities=35%  Similarity=0.579  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      .++|||+|.+|.++++.|.+. |. +|.|+.|.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~-G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM-GVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            899999999999999999998 87 89999986

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=86.37  E-value=0.49  Score=41.91  Aligned_cols=30  Identities=27%  Similarity=0.375  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEec
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk  122 (321)
                      .|.|||+|..|...|..|++. |.+|.++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~-g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEEc
Confidence            489999999999999999998 999999998

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=86.26  E-value=0.78  Score=40.02  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|+|+|.+|.++++.|++. |. +|.|+.|.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~  159 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQ-QPASITVTNRT  159 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-CCSEEEEEESS
T ss_pred             CCEEEEECchHHHHHHHHHHHhc-CCCeEEEEECC
Confidence            35799999999999999999999 85 89999886

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=86.12  E-value=0.72  Score=40.88  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|+|+|.+|.++|+.|++. |. +|.|+.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~-G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIE-GIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            35799999999999999999999 87 79999886

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.08  E-value=0.83  Score=40.47  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      ..|.|||.|..|.+.|..|.+. |.  +|.++++..
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCH
Confidence            4799999999999999999999 88  999999864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=86.00  E-value=0.62  Score=41.58  Aligned_cols=32  Identities=34%  Similarity=0.613  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ..|.|||+|..|.++|+.|+.. +.  .+.|+|..
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~-~~~~el~l~D~~   43 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQ-GIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCC
Confidence            4799999999999999999987 66  89999974

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=85.97  E-value=0.74  Score=39.97  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|+|+|.+|.++|+.|++. |. +|.|+.|.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~-G~~~v~i~~R~  153 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQA-GPSELVIANRD  153 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-CCSEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            35799999999999999999999 85 89999886

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=85.90  E-value=0.64  Score=40.60  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|+|+|.+|.++++.|.+. |. +|.|+.|.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~-G~~~v~v~nRt  155 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDN-FAKDIYVVTRN  155 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHT-TCSEEEEEESC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            45899999999999999999999 87 89999886

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=85.88  E-value=0.41  Score=39.93  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEE-EeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAI-IEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~l-iEk~~  124 (321)
                      ..|.|||+|..|...|..|++. |.+|.+ ++++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~-g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA-QIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT-TCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCCH
Confidence            3699999999999999999999 999998 77753

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=85.85  E-value=1.5  Score=39.71  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ..|+|||+|..|...+..+.+. |++|++++..+.
T Consensus        13 ~~IlIlG~G~lg~~la~aa~~l-G~~viv~d~~~~   46 (377)
T 3orq_A           13 ATIGIIGGGQLGKMMAQSAQKM-GYKVVVLDPSED   46 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCC
Confidence            4799999999999999999999 999999997643

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=85.79  E-value=0.62  Score=42.65  Aligned_cols=29  Identities=14%  Similarity=0.358  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHhhc-CCCCeEEEEe
Q 020815           92 DVVVVGAGSAGLSCAYELSK-NPNIQIAIIE  121 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~-~~G~~V~liE  121 (321)
                      .|.|||+|..|...|..|++ . |.+|.+++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~-G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRD-GVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTST-TEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CCEEEEEe
Confidence            69999999999999999987 6 89999999

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=85.73  E-value=0.78  Score=40.12  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|.|||.|..|..+|..|... |.+|+++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~  187 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAAL-GAKVKVGARE  187 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            45799999999999999999998 9999999986

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.67  E-value=0.78  Score=40.24  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|.|||+|..|..+|..|... |.+|+++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~  189 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAAL-GANVKVGARS  189 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECC
Confidence            45799999999999999999999 9999999986

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=85.50  E-value=0.6  Score=41.03  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      .|.|||+|..|.+.|+.|++. +.  ++.|+|...
T Consensus         2 kI~ViGaG~vG~~la~~l~~~-~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECCh
Confidence            489999999999999999998 77  899999754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=85.50  E-value=0.6  Score=41.18  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |  .+|.++|+..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~-g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEcCCH
Confidence            589999999999999999998 7  6899999853

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=85.46  E-value=0.61  Score=41.18  Aligned_cols=33  Identities=27%  Similarity=0.681  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      ..|.|||+|..|...|+.|+.. |.  .+.|+|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAK-GIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCc
Confidence            4699999999999999999987 77  899999865

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=85.35  E-value=0.81  Score=39.80  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             ccEEEEC-CChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIG-gG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..++|+| +|.+|..+|..|++. |.+|.++.+.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEECC
Confidence            4799999 899999999999999 9999999886

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=85.34  E-value=0.63  Score=43.91  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCC-CCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~  124 (321)
                      .|.|||.|..|+..|..|++.+ |.+|+++|++.
T Consensus        11 kI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            6999999999999999999862 68999999753

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=85.26  E-value=2.5  Score=38.57  Aligned_cols=35  Identities=11%  Similarity=0.085  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      ...++|+|+|..+...|..++.. |++|+|+|.++.
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~l-g~~V~v~D~R~~  238 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFL-GYRVTVCDARPV  238 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCchh
Confidence            46899999999999999999999 999999998754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=85.16  E-value=0.83  Score=39.35  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|.+. |.+|.++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            489999999999999999998 89999998763

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=85.07  E-value=0.87  Score=39.89  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             cEEEEC-CChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIG-gG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.||| .|..|.+.|..|++. |.+|.++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~-G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCeEEEEECCc
Confidence            699999 999999999999999 99999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=84.95  E-value=0.64  Score=41.08  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ..|.|||.|..|...|..|++. |. +|.++++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence            4799999999999999999999 89 99999985

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=84.93  E-value=0.83  Score=43.86  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      -.++|||+|-.|...|..|.+. |.+|++||+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK-PVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCCEEEEECChH
Confidence            5799999999999999999999 999999998764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=84.86  E-value=0.68  Score=40.11  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..++|||+|..|.+.|..|.+. |.+|.++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~-g~~V~v~~r~  161 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKE-GAKVFLWNRT  161 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CCEEEEEECC
Confidence            4799999999999999999998 8899999886

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=84.81  E-value=0.82  Score=40.22  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|++. |.+|.++++..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~-g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKM-GHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4699999999999999999998 99999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=84.69  E-value=0.69  Score=41.31  Aligned_cols=32  Identities=31%  Similarity=0.604  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ..|.|||+|..|.++|+.|+.. |.  ++.++|..
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~-~~~~~l~l~D~~   39 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQ-GITDELVVIDVN   39 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCceEEEEecc
Confidence            4799999999999999999987 76  89999974

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=84.67  E-value=0.57  Score=40.74  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|...|..|++. |.+|.+++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA-GFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-TCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            589999999999999999999 99999999875

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=84.61  E-value=0.82  Score=40.79  Aligned_cols=33  Identities=33%  Similarity=0.599  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ...|.|||+|..|.+.|+.|+.. ++  .+.|+|..
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~-~~~~el~L~Di~   43 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQ-GIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcC-CCCCEEEEEeCC
Confidence            45899999999999999999886 54  79999974

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=84.41  E-value=0.95  Score=43.70  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~a-GVG~ItLvD~D~  361 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT  361 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCCEEEEECCSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            46899999999999999999999 76 789998763

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=84.36  E-value=0.95  Score=42.67  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +.+|.|||.|..|...|..|++. |.+|.++++..
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            35899999999999999999999 99999999853

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=84.32  E-value=0.86  Score=42.08  Aligned_cols=51  Identities=8%  Similarity=0.001  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      ..+.+.|.+.    .|++|+.+++|++|..+++. +. |.+               ++.+++||.||+|++.
T Consensus       215 ~~l~~~l~~~----lg~~i~~~~~V~~i~~~~~~~v~-v~~---------------~~~~~~ad~VI~a~p~  266 (453)
T 2yg5_A          215 QQVSIRMAEA----LGDDVFLNAPVRTVKWNESGATV-LAD---------------GDIRVEASRVILAVPP  266 (453)
T ss_dssp             HHHHHHHHHH----HGGGEECSCCEEEEEEETTEEEE-EET---------------TTEEEEEEEEEECSCG
T ss_pred             HHHHHHHHHh----cCCcEEcCCceEEEEEeCCceEE-EEE---------------CCeEEEcCEEEEcCCH
Confidence            3444555443    36899999999999988875 33 332               1267999999999984

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=84.32  E-value=0.82  Score=45.47  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |++|+++|++.
T Consensus       314 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILS-NYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999999 99999999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=84.28  E-value=0.81  Score=42.36  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||.|..|..+|..|... |.+|+++|+.+
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~-Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAM-GSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            45899999999999999999988 99999999763

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=84.27  E-value=0.9  Score=42.24  Aligned_cols=31  Identities=23%  Similarity=0.553  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC---eEEEEe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI---QIAIIE  121 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~---~V~liE  121 (321)
                      +..|+|+|+|.+|.++|..|.+. |.   +|.|++
T Consensus       186 ~~rvlvlGAGgAg~aia~~L~~~-G~~~~~I~vvd  219 (439)
T 2dvm_A          186 EITLALFGAGAAGFATLRILTEA-GVKPENVRVVE  219 (439)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT-TCCGGGEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHc-CCCcCeEEEEE
Confidence            46899999999999999999999 87   899999

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=84.27  E-value=1.1  Score=36.61  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|.|| |..|...+.+|.+. |.+|.++.+..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR-GHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCc
Confidence            3899996 99999999999999 99999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=84.26  E-value=0.97  Score=42.82  Aligned_cols=34  Identities=9%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|.|||.|..|...|..|++. |.+|.++++..
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADH-GFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46899999999999999999999 99999999854

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=84.20  E-value=0.95  Score=39.04  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. |.  +|.++++..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCH
Confidence            489999999999999999998 87  899998753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.13  E-value=0.81  Score=41.31  Aligned_cols=34  Identities=26%  Similarity=0.526  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus       118 ~~~VlvvG~GglGs~va~~La~a-Gvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATS-GIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEECCCc
Confidence            46899999999999999999998 75 789999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=84.04  E-value=0.91  Score=42.92  Aligned_cols=34  Identities=21%  Similarity=0.466  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|||.|..|..+|..|... |.+|+++|+.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45799999999999999999988 99999999864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=84.04  E-value=0.98  Score=40.40  Aligned_cols=32  Identities=25%  Similarity=0.694  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ..|.|||+|..|.+.|+.|+.. |.  .+.|+|..
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~-~~~~el~L~Di~   53 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMK-DLADELALVDVI   53 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCceEEEEeCC
Confidence            5799999999999999999988 76  89999964

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=84.02  E-value=0.95  Score=43.79  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~a-GVG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCC
Confidence            46899999999999999999998 75 789999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=83.98  E-value=0.77  Score=41.05  Aligned_cols=32  Identities=19%  Similarity=0.475  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ..|.|||+|..|..+|+.|+.. |+  .+.++|..
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~-g~~~ev~L~Di~   55 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMK-DLADEVALVDVM   55 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHH-CCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECC
Confidence            4799999999999999999988 76  89999964

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=83.87  E-value=1.7  Score=39.54  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|||+|..|..++..|.+. |++|++++...
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~-G~~vi~~d~~~   47 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEM-GYKIAVLDPTK   47 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence            4799999999999999999999 99999999764

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=83.74  E-value=0.82  Score=41.14  Aligned_cols=34  Identities=18%  Similarity=0.336  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~-Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILA-GVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence            57999999999999999999998 76 799998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=83.64  E-value=1.2  Score=36.67  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|.|| |..|...+.+|.+. |.+|.++.+..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRR-GHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecc
Confidence            3899998 99999999999999 99999999863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=83.60  E-value=1.2  Score=37.08  Aligned_cols=33  Identities=24%  Similarity=0.261  Sum_probs=30.1

Q ss_pred             ccEEEECC-ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|.|| |..|..++.+|.+. |.+|.++.+..
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~   55 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNE   55 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             CeEEEECCCChHHHHHHHHHHhC-CCeEEEEECCh
Confidence            46999998 99999999999999 99999999864

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=83.60  E-value=1  Score=41.16  Aligned_cols=41  Identities=17%  Similarity=0.051  Sum_probs=31.3

Q ss_pred             CCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       184 ~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      .+.+++.+++|++|..+++++. |.+.+               .+++||.||+|++.
T Consensus       216 l~~~v~~~~~V~~i~~~~~~v~-v~~~~---------------g~~~ad~Vv~a~~~  256 (424)
T 2b9w_A          216 LEHPAERNVDITRITREDGKVH-IHTTD---------------WDRESDVLVLTVPL  256 (424)
T ss_dssp             SSSCCBCSCCEEEEECCTTCEE-EEESS---------------CEEEESEEEECSCH
T ss_pred             hcceEEcCCEEEEEEEECCEEE-EEECC---------------CeEEcCEEEECCCH
Confidence            3457899999999988777654 55421               34899999999994

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=83.60  E-value=1  Score=38.54  Aligned_cols=31  Identities=26%  Similarity=0.561  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .++|||+|..|...|..|.+. |.+|.++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~-g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA-GLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            799999999999999999998 8899999886

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=83.59  E-value=0.85  Score=40.46  Aligned_cols=32  Identities=22%  Similarity=0.529  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      .|.|||+|..|.+.|+.|+.. ++  .+.++|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~-~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQ-DVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCch
Confidence            489999999999999999987 66  899999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=83.58  E-value=0.84  Score=42.40  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..+-|||.|..|+..|..|++. |.+|+++|++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~-G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKH-GVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            4788999999999999999999 99999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=83.57  E-value=1.2  Score=35.92  Aligned_cols=32  Identities=16%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|+|| |..|...+.+|.+. |.+|.++.+..
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~   37 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeCh
Confidence            5999998 99999999999999 99999999864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=83.57  E-value=1.1  Score=39.85  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|+|+|..|+.++..|++..|.+|+.++..
T Consensus       165 ~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~  197 (348)
T 4eez_A          165 DWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN  197 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc
Confidence            469999999999999988876548899999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=83.50  E-value=0.89  Score=39.55  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|.+. |.+|.++++..
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            699999999999999999998 99999998753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=83.49  E-value=0.86  Score=38.82  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..|++. | .+|.++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCeEEEECCCH
Confidence            489999999999999999998 8 8999999853

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.38  E-value=0.82  Score=38.98  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=28.9

Q ss_pred             ccEEEECC-C-hHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGA-G-SAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGg-G-~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      --++|.|| | ..|..+|.+|++. |.+|++++++.
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~   57 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLE-GADVVISDYHE   57 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCH
Confidence            35899999 7 5999999999999 99999998763

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=83.36  E-value=1  Score=40.09  Aligned_cols=33  Identities=12%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             cccEEEECCC-hHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAG-SAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG-~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...++|||+| ..|..+|..|... |.+|+++++.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~-gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLAND-GATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHC-CCEEEEEeCc
Confidence            4689999999 6799999999999 9999999876

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=83.31  E-value=0.9  Score=39.38  Aligned_cols=33  Identities=15%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      ...++|||+|.+|.++++.|.+. |. +|.|+.|.
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~-G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            35799999999999999999998 86 79999886

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=83.29  E-value=1.1  Score=40.45  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||.|..|...|..|++. |.+|.++++..
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~   55 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNV   55 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=83.25  E-value=1.2  Score=38.20  Aligned_cols=32  Identities=13%  Similarity=0.139  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|.|+|..|...+.+|.+. |.+|.++.+..
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQ-GWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGG-TCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHC-CCEEEEEEcCh
Confidence            699999999999999999999 99999998864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=83.12  E-value=1  Score=44.77  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|.|||+|..|...|+.++.. |++|+|+|...
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~a-G~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARV-GISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhC-CCchhcccchH
Confidence            3799999999999999999999 99999999764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=83.12  E-value=0.95  Score=39.29  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|...|..|++. |.+|.++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH-GYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-TCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            489999999999999999998 99999999864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=82.70  E-value=0.75  Score=41.69  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-------CeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-------IQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-------~~V~liEk~~~  125 (321)
                      .|.|||+|..|...|..|++. |       .+|.++++...
T Consensus        23 kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChh
Confidence            699999999999999999998 8       89999998653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=82.65  E-value=1.2  Score=40.42  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|+|+|.|-.|..+|..|.+. |.+|++.|..
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~-GakVvv~D~~  205 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTE-GAKLVVTDVN  205 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             cCEEEEECchHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            46799999999999999999999 9999998864

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=82.60  E-value=0.66  Score=41.53  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-------CeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-------IQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-------~~V~liEk~~~  125 (321)
                      .|.|||+|..|...|..|++. |       .+|.++++...
T Consensus        10 kI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChh
Confidence            699999999999999999998 8       89999998653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=82.25  E-value=0.95  Score=41.59  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      .-.|+|||+|..|..+|..|... |. +|+++++.
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~-G~~~V~v~~r~  200 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRT  200 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSS
T ss_pred             CCEEEEEChHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            35799999999999999999988 87 89999886

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=82.16  E-value=1.2  Score=42.00  Aligned_cols=32  Identities=13%  Similarity=0.396  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +|.|||.|..|...|..|++. |.+|.++++..
T Consensus         4 ~IgvIG~G~mG~~lA~~La~~-G~~V~v~dr~~   35 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             eEEEEChHHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            699999999999999999999 99999999853

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=82.14  E-value=1.5  Score=37.60  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|.|+|..|...+..|.+. |.+|.++.+..
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   36 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQ-GHEVTGLRRSA   36 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECTT
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            599999999999999999999 99999999864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=81.97  E-value=1.2  Score=37.90  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC----CeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN----IQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G----~~V~liEk~~~  125 (321)
                      .|.|||+|..|...|..|++. |    .+|.++++...
T Consensus         6 ~i~iiG~G~mG~~~a~~l~~~-g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            6 KLGFMGLGQMGSALAHGIANA-NIIKKENLFYYGPSKK   42 (262)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-TSSCGGGEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc
Confidence            699999999999999999998 8    68999998754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=81.88  E-value=1.4  Score=39.55  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             ccEEEECC-ChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           91 TDVVVVGA-GSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGg-G~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ..|+|||+ |..|..+|+.++.. |.  +++|+|..
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~-g~~~evvLiDi~   43 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMM-RLTPNLCLYDPF   43 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHT-TCCSCEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhc-CCCCEEEEEeCC
Confidence            47999998 99999999999987 64  89999974

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=81.79  E-value=1.3  Score=39.77  Aligned_cols=33  Identities=24%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|.|||.|..|.+.|..|.+. |.+|.+++++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAA-NHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3699999999999999999999 99999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=81.74  E-value=1.2  Score=41.89  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +|.|||+|..|...|..|++. |.+|.++++..
T Consensus         3 kIgVIG~G~mG~~lA~~La~~-G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            699999999999999999999 99999999853

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=81.50  E-value=1.5  Score=39.20  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.|+|+|+|..|+.++..+... |.+|+.++..+
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~  210 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNE  210 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            34799999999999988777668 99999998764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=81.40  E-value=1.6  Score=36.49  Aligned_cols=32  Identities=13%  Similarity=0.219  Sum_probs=28.7

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -|+|.|| |..|..+|.+|++. |.+|+++.+..
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~   35 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARA-GHTVIGIDRGQ   35 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCCh
Confidence            3899987 88999999999999 99999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=81.32  E-value=1.2  Score=38.68  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|.+. |.+|.++++..
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKE-GVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            3699999999999999999998 99999999753

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=81.21  E-value=0.87  Score=43.43  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..++|+|+|.+|.++|+.|++. |.+|+++.+.
T Consensus       365 k~vlV~GaGGig~aia~~L~~~-G~~V~i~~R~  396 (523)
T 2o7s_A          365 KTVVVIGAGGAGKALAYGAKEK-GAKVVIANRT  396 (523)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHH-CC-CEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            3699999999999999999999 8999999876

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=81.06  E-value=1.4  Score=40.93  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~a-Gvg~i~ivD~D~   74 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALS-GFRQIHVIDMDT   74 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHT-TCCCEEEEECCB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence            46899999999999999999998 76 799998753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=81.05  E-value=1.5  Score=40.79  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||.|..|+..|..|++  |.+|+++|+..
T Consensus        37 mkIaVIGlG~mG~~lA~~La~--G~~V~~~D~~~   68 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ--NHEVVALDIVQ   68 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TSEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHc--CCeEEEEecCH
Confidence            379999999999999999986  79999999864

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=80.98  E-value=1.1  Score=40.95  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             cccEEEECC-ChHHHHHHHHhhcCCCC---eEEEEeccC
Q 020815           90 DTDVVVVGA-GSAGLSCAYELSKNPNI---QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGg-G~aGl~aA~~La~~~G~---~V~liEk~~  124 (321)
                      ...|+|||+ |.+|+.|+..|... |.   +|.++|.+.
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~l-Ga~~~~V~v~D~~~  251 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKV-GIPDANILKWDIKE  251 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHT-TCCGGGEEEECHHH
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhC-CCCcCceEEeeccc
Confidence            468999999 99999999999999 87   999999875

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=80.96  E-value=1.5  Score=38.10  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=28.7

Q ss_pred             ccEEEECCC---hHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAG---SAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG---~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      --++|.||+   ..|..+|.+|++. |.+|+++++..
T Consensus        31 k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~   66 (296)
T 3k31_A           31 KKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSE   66 (296)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            358999985   7899999999999 99999998863

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=80.95  E-value=1.6  Score=37.78  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC---eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI---QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~---~V~liEk~~  124 (321)
                      ..|.|||+|..|.+.|..|.+. |.   +|.+++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~-g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIAN-GYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHT-TCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHC-CCCCCeEEEEeCCH
Confidence            4699999999999999999998 88   899999864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=80.89  E-value=1.7  Score=35.71  Aligned_cols=32  Identities=16%  Similarity=0.336  Sum_probs=28.5

Q ss_pred             cEEEECC-ChHHHHHHHHhh-cCCCCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELS-KNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La-~~~G~~V~liEk~~  124 (321)
                      -|+|.|| |..|...+..|+ +. |.+|+++.+..
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~~   40 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYT-DMHITLYGRQL   40 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHC-CCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcC-CceEEEEecCc
Confidence            3999995 999999999999 78 99999999864

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=80.88  E-value=1.2  Score=39.42  Aligned_cols=31  Identities=23%  Similarity=0.483  Sum_probs=27.7

Q ss_pred             EEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      |.|||+|..|...|+.|+.. ++ .+.|+|...
T Consensus         2 I~IiGaG~vG~~~a~~l~~~-~l~el~L~Di~~   33 (308)
T 2d4a_B            2 ITILGAGKVGMATAVMLMMR-GYDDLLLIARTP   33 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHH-TCSCEEEECSST
T ss_pred             EEEECcCHHHHHHHHHHHhC-CCCEEEEEcCCh
Confidence            79999999999999999987 77 599999863

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=80.84  E-value=1.5  Score=39.26  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|.+.|..|.+. |.+|++.++..
T Consensus        18 ~I~IIG~G~mG~alA~~L~~~-G~~V~~~~~~~   49 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKDS-GVDVTVGLRSG   49 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECCTT
T ss_pred             EEEEECchHHHHHHHHHHHHC-cCEEEEEECCh
Confidence            699999999999999999998 89999998864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=80.73  E-value=1.6  Score=41.13  Aligned_cols=33  Identities=12%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .+|.|||.|..|...|..|++. |.+|.++++..
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~   37 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   37 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CEEEEEChhHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=80.72  E-value=1  Score=44.68  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|...|..|++. |++|+++|+..
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASK-GTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhC-CCEEEEEECCH
Confidence            3699999999999999999999 99999999864

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=80.61  E-value=2  Score=36.75  Aligned_cols=32  Identities=16%  Similarity=0.109  Sum_probs=28.6

Q ss_pred             cEEEECC---ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGA---GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg---G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -++|.||   |..|..+|..|++. |.+|+++.++.
T Consensus         8 ~vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~   42 (275)
T 2pd4_A            8 KGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNE   42 (275)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESST
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            5899997   58899999999999 99999999864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=80.57  E-value=1.6  Score=38.68  Aligned_cols=32  Identities=22%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCC--CeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPN--IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G--~~V~liEk~~  124 (321)
                      .|+|||+ |..|...|+.|+.. +  ..+.++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~-~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhC-CCCcEEEEEeCCc
Confidence            4899998 99999999999987 7  6899999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=80.52  E-value=1.5  Score=40.13  Aligned_cols=31  Identities=29%  Similarity=0.420  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|+..|..|++  |.+|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~--G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL--QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC--CCEEEEEECCH
Confidence            48999999999999999997  69999999853

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=80.39  E-value=1.9  Score=39.76  Aligned_cols=33  Identities=15%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|+|+|..|...+..+.+. |++|.+++..+
T Consensus        36 ~~IlIlG~G~lg~~~~~aa~~l-G~~v~v~d~~~   68 (419)
T 4e4t_A           36 AWLGMVGGGQLGRMFCFAAQSM-GYRVAVLDPDP   68 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCCC
Confidence            4799999999999999999999 99999998653

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=80.30  E-value=1.6  Score=40.63  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCC---eEEEEeccCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNI---QIAIIEQSVS  125 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~---~V~liEk~~~  125 (321)
                      .+..|||.|+|.+|+.+|..|... |+   ++.++|+...
T Consensus       218 ~d~riV~~GAGaAGigia~ll~~~-G~~~~~i~l~D~~Gl  256 (487)
T 3nv9_A          218 HECRMVFIGAGSSNTTCLRLIVTA-GADPKKIVMFDSKGS  256 (487)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT-TCCGGGEEEEETTEE
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHc-CCCcccEEEEecccc
Confidence            357899999999999999999888 87   8999998753

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=80.13  E-value=1.7  Score=39.19  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .-.|+|+|+|..|+.++..+... |.+|+++++.
T Consensus       188 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~  220 (366)
T 1yqd_A          188 GKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTS  220 (366)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            34799999999999998887778 9999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-91
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	6e-62
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-16
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	5e-12
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-08
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-08
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-08
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	6e-08
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-07
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-07
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	3e-07
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	3e-07
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	4e-07
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	5e-07
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	5e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	6e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	6e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	9e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	9e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	9e-07
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-06
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-06
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	1e-06
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	2e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-06
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	2e-06
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	3e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	4e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	7e-06
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	1e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	2e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-05
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	6e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	6e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	7e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	8e-05
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	9e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	1e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	1e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	2e-04
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	3e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	5e-04
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	5e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	5e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	6e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	6e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	8e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	9e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.001
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.001

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score =  272 bits (696), Expect = 1e-91
 Identities = 238/263 (90%), Positives = 253/263 (96%)

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLS AYE+SKNPN+Q+
Sbjct: 1   YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQV 60

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIM
Sbjct: 61  AIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIM 120

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSS
Sbjct: 121 SKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS 180

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEI
Sbjct: 181 CGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI 240

Query: 298 DGAPRMGPTFGAMMISGQKAARM 320
           DGAPRMGPTFGAMMISGQKA ++
Sbjct: 241 DGAPRMGPTFGAMMISGQKAGQL 263

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  197 bits (501), Expect = 6e-62
 Identities = 152/284 (53%), Positives = 192/284 (67%), Gaps = 24/284 (8%)

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQI 117
           D + FKF PI+ES VSR MT RY  D+  +A +DV++VGAGS+GLS AY ++K  P++++
Sbjct: 19  DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 78

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
            IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++
Sbjct: 79  CIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVL 138

Query: 178 SKLLARPNVKLFNAVAAEDLI------VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231
           SK+L  PNVKLFNA   EDL+           V GVVTNW LV+  H TQ CMDPNV+E 
Sbjct: 139 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIEL 198

Query: 232 ---------------KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI 276
                           V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +
Sbjct: 199 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDV 258

Query: 277 VRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA 318
           V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA
Sbjct: 259 VIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAA 302

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 76.0 bits (186), Expect = 3e-16
 Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 46/281 (16%)

Query: 71  SIVSREMTRRY-MTDMITYA-DTDVVVVGAGSAGLSCAYELSK-----NPNIQIAIIEQS 123
           +I  R+  +R+   +M  +A + DVV+VGAG AGLS A  L +       ++++ ++E++
Sbjct: 11  TIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 70

Query: 124 VSPGGGAWLGGQLFSA-----------------MVVRKPAHIFLDELGID--------YD 158
              G     G  L                      V +     L E              
Sbjct: 71  AHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPM 130

Query: 159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218
                 V++   L +            V    A A       G   G    +  +     
Sbjct: 131 NNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGA 190

Query: 219 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVR 278
              +      + AKV + + G  G       K+       E   G ++            
Sbjct: 191 PKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQS------------ 238

Query: 279 LTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAR 319
           + +   PG ++ G     ++     G      M SG  AA 
Sbjct: 239 IPKLTFPGGLLIGCSPGFMNVPKIKGTHTA--MKSGTLAAE 277

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 62.8 bits (151), Expect = 5e-12
 Identities = 38/258 (14%), Positives = 81/258 (31%), Gaps = 47/258 (18%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           DV+V+G G +GL  A   ++     + ++++    G    + G     +  R P    + 
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK 62

Query: 152 ELGIDYDEQDNYVVIKHAALFTSTI----------------------------MSKLLAR 183
            +  +     +   I +     +                              +   L  
Sbjct: 63  HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122

Query: 184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDG 242
             VK+      E +  + G+   V+                   V+E   VV++  G   
Sbjct: 123 LGVKIRTNTPVETIEYENGQTKAVILQ--------------TGEVLETNHVVIAVGGKSV 168

Query: 243 P-FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAP 301
           P  G+TG     +      +  +    ++  E     ++ +   G+   G EV +I G  
Sbjct: 169 PQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCG-EVLDIHG-Y 226

Query: 302 RMGPTFGAMMISGQKAAR 319
             G    + +++G+ A  
Sbjct: 227 TGGYNITSALVTGRIAGT 244

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-----------LGGQLFSAM 140
           DVVVVG G +G++ A  L  +  + + ++E     GG  +           LGG      
Sbjct: 1   DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT 59

Query: 141 VVRKPAHIFLDELGIDYDEQDN 162
             +        ELG++  + + 
Sbjct: 60  --QNRILRLAKELGLETYKVNE 79

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFSAM 140
             V+++G+G +GL+ A +L     + + ++E     GG             LG  + +  
Sbjct: 6   GKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVT-G 63

Query: 141 VVRKPAHIFLDELGIDYDEQDNYVVI 166
           +   P  +   ++ ++  +      +
Sbjct: 64  LGGNPMAVVSKQVNMELAKIKQKCPL 89

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           D ++VG+G  G  CA EL K  N ++ +IE+    GG A+
Sbjct: 3   DYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNAY 41

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 51.1 bits (120), Expect = 6e-08
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
            V+VVGAG +G+S A  LS+     + I+E +   GG   
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH 41

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 81  YMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLF 137
           +M +     + DV+V+G G      +  +S N   ++  ++++   GG +       +L+
Sbjct: 2   HMDE-----EYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGGESSSITPLEELY 55

Query: 138 S 138
            
Sbjct: 56  K 56

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 34/238 (14%), Positives = 66/238 (27%), Gaps = 14/238 (5%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFSAMVV 142
           V V+GAG +GL+ AY+L  +  + + + E     GG              G    +    
Sbjct: 4   VAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTES-- 60

Query: 143 RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 202
                  +D LG+   +Q      K       T +       ++   N ++    +    
Sbjct: 61  EGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLL 120

Query: 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVP 262
               +  N  L  ++   +S            V     D     T      S+ M    P
Sbjct: 121 E-PILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFP 179

Query: 263 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM 320
            +  L+       +  +  ++ P                R   +F  +         +
Sbjct: 180 ELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAI 237

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGA 130
            +V++GAG  G + A EL       I +++Q  ++  GG+
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGS 42

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 49.0 bits (116), Expect = 3e-07
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           +++VGAG +G     +L++    Q+ II+Q    GG ++
Sbjct: 5   ILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSY 42

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134
           ++ +++GAG+AGL CA +L+K     + + +     G    + G
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIGRKILMSG 47

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.8 bits (115), Expect = 4e-07
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 90  DTDVVVVGAGSAGLSCAYELS---KNPNIQIAIIEQSVSPGGGAWLGGQ 135
           +TD++++G G +G   AYE +   K   +++ ++E++     GA   G 
Sbjct: 21  ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGL 69

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
            VV+VGAG AGLS AY L+     Q+ ++E S  PGG   
Sbjct: 32  HVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGRVR 70

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 48.2 bits (113), Expect = 5e-07
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ 135
           DV+VVGAGS G++  Y+L+K   ++  +++    P       G 
Sbjct: 5   DVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPPHTNGSHHGD 47

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150
           T V+VVGAGSAG + +    K     + +++++   GG + +     +A+  ++     +
Sbjct: 20  TQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGV 78

Query: 151 DE 152
           ++
Sbjct: 79  ED 80

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134
           TDVV++G+G AGL+ A         ++ ++E+   PGG   L  
Sbjct: 24  TDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAA 66

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.3 bits (111), Expect = 9e-07
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134
             DVVVVG+G AG S A   + +   ++ +IE+    GG A L  
Sbjct: 16  TVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAA 59

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 47.1 bits (110), Expect = 9e-07
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           + VV+G G  G + AY L+K  N   A+ E     G    
Sbjct: 6   EAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTTS 44

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.2 bits (111), Expect = 9e-07
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150
           T V ++GAG +GL     L K   I   I+E+         +   +    +V       L
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTPDYVLGRIRAGVLEQGMVD-----LL 56

Query: 151 DELGIDYDEQDNYVVIKHAALFTSTIM 177
            E G+D     + +V +   +  +   
Sbjct: 57  REAGVDRRMARDGLVHEGVEIAFAGQR 83

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           +V VVG G +GL+ A+ L         ++E S   GG   
Sbjct: 2   NVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGGAVG 40

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           + DV+VVGAG +GL   Y L +     + +IE +   GG
Sbjct: 7   EVDVLVVGAGFSGLYALYRL-RELGRSVHVIETAGDVGG 44

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWL--GG 134
           M T+   D+ +VGAG AGL  A   ++ NPN +IA+I +            GG
Sbjct: 1   MQTF-QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGG 52

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           D ++ G G  GL+ A  L++NPNI + +IE
Sbjct: 19  DYIIAGGGLTGLTTAARLTENPNISVLVIE 48

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           D DV+V+G G      +  LS +   ++  I++    GG A 
Sbjct: 5   DYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEAA 45

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           D ++ G G  GL+ A +L++NP I++ +IE
Sbjct: 26  DYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 15/166 (9%)

Query: 91  TDVVVVGAGSAGLSCAYELS----KNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146
            DV++VGAG AGL  A  LS    + P++++ II++  +             A  ++   
Sbjct: 8   CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQ-------ADGLQCRT 60

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK--LLARPNVKLFNAVAAEDLIVKGGRV 204
              L  LG+          +   AL+            R    L        +++  GR+
Sbjct: 61  LESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRI 120

Query: 205 GGVVTNWA--LVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 248
              + +    +       +  + P  ME     +      P   T 
Sbjct: 121 ERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTL 166

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK 144
           ++ ++   VVV+G+G  GLS A  L++     + I+ + +     +      ++      
Sbjct: 1   LMMHSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDVSSQTFASPWAGANWTP 59

Query: 145 PA 146
             
Sbjct: 60  FM 61

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150
             + VVG   +GL+ A  L     + + + E+S  P  G   G  +      +     +L
Sbjct: 5   DRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQPLSGFGTGIVV------QPELVHYL 57

Query: 151 DELGIDYD 158
            E G++ D
Sbjct: 58  LEQGVELD 65

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           D+++ GAG  GLSCA  L +    ++ ++E S                + ++  A   L 
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV-------GINIQPAAVEALA 55

Query: 152 ELGIDYDEQDNYVVIKH 168
           ELG+        +    
Sbjct: 56  ELGLGPALAATAIPTHE 72

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG 128
           + ++GAG +GL  A  L       Q+ + E+  SPGG
Sbjct: 7   IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 43

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHI 148
           A+ DVVV+G G  G S A+  +    +++AI+E+  + GG     G + S  ++   A I
Sbjct: 5   AEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVI 63

Query: 149 FLDELGIDYDEQDNYVVIKHAAL 171
                      +     +    L
Sbjct: 64  DEVRHLAANGIKYPEPELDIDML 86

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 93  VVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH 147
           VVV+GAG  GLS A  + +        + + +     +P     +   L+          
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNP 62

Query: 148 IFLDELGIDYDEQDNY 163
              +     ++   ++
Sbjct: 63  QEANWNQQTFNYLLSH 78

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 93  VVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLF 137
           + VVG+G AG   A  L K+     + I E+ + P G    G    
Sbjct: 4   ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPD 49

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGGQLFSAM 140
            DV+++G+G+AGLS A  L+      + ++ +     G   +  G + +  
Sbjct: 8   CDVLIIGSGAAGLSLALRLADQHQ--VIVLSKGPVTEGSTFYAQGGIAAVF 56

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           DV+V+GAG  G   A + ++   ++ A+IE+     G   LGG   +   +   A +   
Sbjct: 5   DVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSS 63

Query: 152 ELGIDYDEQDNYVVIKHAA 170
               +  E      I    
Sbjct: 64  YKFHEAHESFKLHGISTGE 82

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 9/158 (5%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-----GAWLGGQLFSAMVVRKPA 146
           DVV++G G AG   A + ++      A +E+    GG     G      L +   +    
Sbjct: 7   DVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQM 65

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG 206
           H    + GID +      V          +         +   N V         G    
Sbjct: 66  HTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKV---TYYKGNGSFED 122

Query: 207 VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244
                       +     D  +    ++V++     PF
Sbjct: 123 ETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF 160

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIF 149
           + DVV++G G  G   A + ++    +   IE+     GG  L      +  +   +H++
Sbjct: 3   ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMY 60

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132
            D +V+G G AGL  A    +   +   ++         +  
Sbjct: 6   CDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPVKRSHSAA 46

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 15/79 (18%)

Query: 54  ASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNP 113
            +  +D +   F          E+   Y          D V+VG G++G   A  LS+  
Sbjct: 3   TTSDHDFSYLSFAY---DATDLELEGSY----------DYVIVGGGTSGCPLAATLSEKY 49

Query: 114 NIQIAIIEQSVSPGGGAWL 132
              + ++E+   P     +
Sbjct: 50  K--VLVLERGSLPTAYPNV 66

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
           + D VV+GAG AG+  A ++S++     A++ +           
Sbjct: 7   EFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFPTRSHTVSA 49

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 28/229 (12%)

Query: 93  VVVVGAGSAGLSCAYELSK------NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146
           + +VG+G +    A  L K      + ++ + ++E   +P G       L  + V     
Sbjct: 5   IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG-------LVRSGVAPDHP 57

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG 206
            I       +   +D         +    +    L+     +  AV A+   V    +  
Sbjct: 58  KIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPF 117

Query: 207 VVTNWALVSMNHDTQSCMDPNVME-----AKVVVSSCGHDGPFGATGVKRLKSIGMIEEV 261
              +  + ++        +  V+         V+ +   D          +K++G  +E 
Sbjct: 118 DDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVD--TLIKNLGNAKEG 175

Query: 262 PGMKALDMNSAEDAIVRLTREVVPGMIVTG--------MEVAEIDGAPR 302
              K+   + A+     L       +                E  G PR
Sbjct: 176 AECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPR 224

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
             +V+G+G  G   A  L++   I   I+E
Sbjct: 9   PALVIGSGYGGAVAALRLTQ-AGIPTQIVE 37

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
             VV+G G      A  L +   +Q  ++E
Sbjct: 4   PAVVIGTGYGAAVSALRLGE-AGVQTLMLE 32

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132
           +T+ +VVGAG  G   A   ++    ++ I+E+     GG  L
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEK--GNLGGVCL 42

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           D D++++G GS GL+ A E +K  + ++ +++       G
Sbjct: 3   DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPTPLG 41

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           DVV+VG+G  G + A EL      ++A+ +
Sbjct: 6   DVVIVGSGPIGCTYARELVGA-GYKVAMFD 34

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF----SAMVVRKPAH 147
           D + +G GS G++     +     + A+IE     G    +G         A  +R+  H
Sbjct: 4   DYIAIGGGSGGIASINRAAMY-GQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIH 62

Query: 148 IFLDELGIDYDE 159
           ++  + G D   
Sbjct: 63  MYGPDYGFDTTI 74

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           D ++VGAG  G+  A  LS+    ++ ++E
Sbjct: 4   DYIIVGAGPGGIIAADRLSEAGK-KVLLLE 32

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 2/153 (1%)

Query: 91  TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHI 148
           T +V++G G AG   A   + +     Q+ +I+     G             +       
Sbjct: 2   TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRT 61

Query: 149 FLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV 208
            L          D            + + +   A+        ++    ++ G       
Sbjct: 62  ELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDS 121

Query: 209 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241
           T          T +    +  EA VV+ + G  
Sbjct: 122 TPGLARHRIKATAADGSTSEHEADVVLVATGAS 154

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS-----VSPGGGAWLGGQLFSAMVVRKPA 146
           V+V+G+   G     EL   +P+ +I   E+      +S G   +L G++     VR   
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62

Query: 147 HIFLDELGIDYDEQDNYVVIKH 168
              ++  G++         I+ 
Sbjct: 63  GEKMESRGVNVFSNTEITAIQP 84

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM 140
           A  D +V+G GS GL+ A   ++    + A++E     G    +G      M
Sbjct: 2   ASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKLGGTCVNVGCVPKKVM 52

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
            T ++++G G  G   A    +   I   ++E     G
Sbjct: 5   QTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQALGG 41

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 38.1 bits (87), Expect = 9e-04
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132
           D++V+G GS G++ A   +++ N ++A++E+  S  GG  +
Sbjct: 3   DLIVIGGGSGGMAAARRAARH-NAKVALVEK--SRLGGTCV 40

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
           D+VV+GAGS GL   +  +     ++A+I+     G   +  
Sbjct: 5   DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAA 46

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           D+VV+GAGS GL  A+  +     ++A+I+  +  G  
Sbjct: 5   DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPP 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.98
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	99.92
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.88
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.86
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.85
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.81
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.76
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.76
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.76
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.7
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.7
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.65
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.63
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.62
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.58
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.58
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.56
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.52
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.51
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.51
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.49
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.47
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.46
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.44
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.43
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.42
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.4
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.39
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.37
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.37
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.37
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.37
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.35
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.33
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.32
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.31
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.29
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.28
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.28
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.25
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.25
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.18
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.18
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.18
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.18
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.17
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.17
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.16
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.15
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.14
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.14
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.11
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.08
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.08
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.06
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.06
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.05
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.03
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.03
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.03
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.02
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.99
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.97
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.97
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.93
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.92
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.89
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.87
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.83
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.81
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.8
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.79
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.77
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.76
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.76
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.68
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.61
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.58
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.54
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.53
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.41
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.36
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.34
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.33
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.27
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.27
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.24
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.17
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.08
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.92
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.9
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.88
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.56
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.55
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.4
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.18
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	96.09
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.87
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.81
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.79
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.61
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.33
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.32
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.7
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.42
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.31
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.25
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.1
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.06
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.65
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.64
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.49
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.49
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.47
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.96
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.92
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.9
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.85
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.77
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.67
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.65
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.08
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.02
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.75
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.68
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.55
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.43
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.42
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.25
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.16
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.13
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.11
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.1
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	91.01
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.93
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.92
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.9
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	90.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.38
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.24
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.1
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.06
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.03
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.09
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.01
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.89
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.78
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.63
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	88.33
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.2
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	87.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.36
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.21
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.2
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.14
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.95
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	86.9
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	86.65
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.39
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	86.13
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.02
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	84.96
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.81
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	83.54
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	82.07
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.37
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	81.31
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.18
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	80.69

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=5.3e-32  Score=240.08  Aligned_cols=263  Identities=90%  Similarity=1.371  Sum_probs=218.6

Q ss_pred             CCCCCCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc
Q 020815           58 YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF  137 (321)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~  137 (321)
                      +|.+.|.|.|+..+..++++.++|+.+|....++||+|||||++||++|++|+++.|++|+|||+++.+||.+|.+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~   80 (278)
T d1rp0a1           1 YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLF   80 (278)
T ss_dssp             CCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTC
T ss_pred             CCccCceeecchHHHHhHHHHHhhhcccccccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEc
Confidence            58899999999999999999999999988778999999999999999999998733999999999999999999888877


Q ss_pred             hhhhccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815          138 SAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (321)
Q Consensus       138 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~  217 (321)
                      ............++++++++.....+............+..+.....++.++..+.+.++..+++++.++...+......
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~  160 (278)
T d1rp0a1          81 SAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQN  160 (278)
T ss_dssp             CCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTC
T ss_pred             CHHHHhhhHHHHHHHcCCceecCCccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeee
Confidence            76666666667788999999877777666666666666666666688999999999999999999999988766443333


Q ss_pred             cCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815          218 HDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (321)
Q Consensus       218 ~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~  297 (321)
                      ..........+++++.||+|+|..+.......+.+...+..........++....+..++....++.|+.++.|+++.++
T Consensus       161 ~~~~~~~~~~~~~a~~vv~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~vv~~~~~~~~g~~~~G~~v~~~  240 (278)
T d1rp0a1         161 HHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI  240 (278)
T ss_dssp             TTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH
T ss_pred             ecccccccceeeccceEEECcCCCcccccchhhhcccccceeecccccccccccCCceEEEeeeEEeeCeEEeeeEEeee
Confidence            33333345578999999999998877666666666666666666666677777777777778889999999999999999


Q ss_pred             CCCCCCCcceeeeeeecchhccc
Q 020815          298 DGAPRMGPTFGAMMISGQKAARM  320 (321)
Q Consensus       298 ~g~~~~~~~~~~~~~~~~~~~~~  320 (321)
                      ++.+|++|+||+|++||++|||+
T Consensus       241 ~~~~R~~~~~g~~~~sG~~aA~~  263 (278)
T d1rp0a1         241 DGAPRMGPTFGAMMISGQKAGQL  263 (278)
T ss_dssp             HTCEECCSCCHHHHHHHHHHHHH
T ss_pred             ccCCccCCccchhhccchHHHHH
Confidence            99999999999999999999984

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.9e-25  Score=197.37  Aligned_cols=262  Identities=58%  Similarity=0.958  Sum_probs=193.6

Q ss_pred             CCCCCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccc
Q 020815           59 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLF  137 (321)
Q Consensus        59 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~  137 (321)
                      +++.+++.++.+....+.+.+.++.++....++||+|||||++|++||+.|++ .+|++|+|+|++..+||..+.++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   98 (311)
T d2gjca1          19 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLF   98 (311)
T ss_dssp             TCTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGC
T ss_pred             ccccceeeechhhHHHHHHHhhhccccccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEecCEeC
Confidence            56678999999999999999999888887778999999999999999999995 34899999999999999988888777


Q ss_pred             hhhhccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC------EEEEEEEee
Q 020815          138 SAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNW  211 (321)
Q Consensus       138 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~------~v~gv~~~~  211 (321)
                      ............+.++|+.+..............+...+..+.....|++++....+.++....+      +..++...+
T Consensus        99 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  178 (311)
T d2gjca1          99 SAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNW  178 (311)
T ss_dssp             CCEEEETTTHHHHHHTTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEE
T ss_pred             CHHHHHhHHHHHHHhCCcEEEEeccccEEEeeeeeechhhhhhhccCCCEEecccccceeEecCCceeeccceEEEEEcc
Confidence            76666666677888999999887776666666666666666666678999999988888876543      223333333


Q ss_pred             cceecccCCCCCCCceEEEc---------------CeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchh
Q 020815          212 ALVSMNHDTQSCMDPNVMEA---------------KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI  276 (321)
Q Consensus       212 ~~~~~~~~~~~~g~~~~i~a---------------~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  276 (321)
                      .................+..               +.++.+.|..........+.+...+...........+....+..+
T Consensus       179 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i  258 (311)
T d2gjca1         179 TLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDV  258 (311)
T ss_dssp             HHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHH
T ss_pred             eEEEEeeccccccCHHHHHhhhheeEEecCccccceEEEEccccCceeEeeeeeEEEecccccccccccceeeccCCCeE
Confidence            22211111111111122222               467788887666665666666666665566666777766666666


Q ss_pred             hccc--ccccccccccccchhhcCCCCCCCcceeeeeeecchhccc
Q 020815          277 VRLT--REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM  320 (321)
Q Consensus       277 ~~~~--~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  320 (321)
                      +..+  ....||+|++||++.+++|.+||||+||+||.||++||+.
T Consensus       259 v~~~~~~~~~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~  304 (311)
T d2gjca1         259 VIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQ  304 (311)
T ss_dssp             HHHCEECTTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHH
T ss_pred             EECCCcEEccCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHH
Confidence            6554  3467999999999999999999999999999999999973

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.88  E-value=9.8e-23  Score=176.48  Aligned_cols=208  Identities=19%  Similarity=0.297  Sum_probs=141.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCccc---------chh--------------h---hcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL---------FSA--------------M---VVR  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~---------~~~--------------~---~~~  143 (321)
                      +|||||||||++|++||+.|++. |++|+||||+..+++.....+..         ...              .   ...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~-G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            69999999999999999999999 99999999998887543221110         000              0   001


Q ss_pred             chHHHHHHHcCCCcccCCCeE---EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815          144 KPAHIFLDELGIDYDEQDNYV---VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       144 ~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~  220 (321)
                      .....++.++++++.......   .......+.+.|++++. +.|++++++++|++|..+++++.+|.+.+         
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~~~~v~~~~---------  150 (251)
T d2i0za1          81 EDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK-DLGVKIRTNTPVETIEYENGQTKAVILQT---------  150 (251)
T ss_dssp             HHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT---------
T ss_pred             HHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHH-HcCCcccCCcEEEEEEEECCEEEEEEeCC---------
Confidence            123467778888776543222   12345677888888887 67999999999999999999998888743         


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCCCc--c--hhhhhhhhcCC--cccccCCceeecccccchhhcccccccccccccccch
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGPFG--A--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~~~--~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~  294 (321)
                           ..+++||+||+|||+.+.+.  .  ++++.+...++  .+..+...++.    +...........||.+++|+.+
T Consensus       151 -----g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~g~~l  221 (251)
T d2i0za1         151 -----GEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVK----EINPKEMSSKFTNGLYFCGEVL  221 (251)
T ss_dssp             -----CCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGG----GEETTTTEESSSBTEEECGGGB
T ss_pred             -----CCeEecCeEEEccCCccccccCCCcccchhcccceeeeeeeeecccCcc----ccCchhHHHhcCCCcEeeeeEE
Confidence                 36899999999999987432  2  34556666665  22222222221    1111122335678999998554


Q ss_pred             hhcCCCCCCCcceeeeeeecchhcc
Q 020815          295 AEIDGAPRMGPTFGAMMISGQKAAR  319 (321)
Q Consensus       295 ~~~~g~~~~~~~~~~~~~~~~~~~~  319 (321)
                      . .+| ...|+.+..++++|.+|++
T Consensus       222 ~-~~~-~~gG~~~~~a~~~G~~a~~  244 (251)
T d2i0za1         222 D-IHG-YTGGYNITSALVTGRIAGT  244 (251)
T ss_dssp             S-CBC-CTTTHHHHHHHHHHHHHHH
T ss_pred             E-ccC-CcchHHHHHHHHHHHHHHH
Confidence            3 333 2458888999999998875

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.86  E-value=5.1e-21  Score=172.02  Aligned_cols=207  Identities=19%  Similarity=0.290  Sum_probs=139.2

Q ss_pred             CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc----------------hh----------h
Q 020815           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF----------------SA----------M  140 (321)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~----------------~~----------~  140 (321)
                      .+++||||||+|++|+++|+.|++. |++|+||||.+..||.+.. .+.+.                ..          .
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~-G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~   99 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRN   99 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTT-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhcccc
Confidence            3468999999999999999999999 9999999999888776532 22110                00          0


Q ss_pred             ---------hc--cchHHHHHHHcCCCcccCC--------CeEE----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          141 ---------VV--RKPAHIFLDELGIDYDEQD--------NYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       141 ---------~~--~~~~~~~l~~~g~~~~~~~--------~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                               +.  ....++||+++|++|....        ....    ......+.+.|++++. +.|++|+++++|++|
T Consensus       100 ~~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~~gv~i~~~t~v~~l  178 (322)
T d1d4ca2         100 INDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAV-KRGTDIRLNSRVVRI  178 (322)
T ss_dssp             CSCHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHH-HTTCEEETTEEEEEE
T ss_pred             ccCHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHH-hcCceEEEeeecccc
Confidence                     00  0134578889999876421        1111    1124567788888887 579999999999999


Q ss_pred             EEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcc----------------------hhhhhhhh
Q 020815          198 IVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA----------------------TGVKRLKS  254 (321)
Q Consensus       198 ~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~----------------------~~~~~~~~  254 (321)
                      +.+ +++|.||.+.+          .++....|.||.||+|||+++....                      .+++....
T Consensus       179 i~d~~G~V~Gv~~~~----------~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~  248 (322)
T d1d4ca2         179 LEDASGKVTGVLVKG----------EYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQ  248 (322)
T ss_dssp             ECCSSSCCCEEEEEE----------TTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHH
T ss_pred             cccccccccceEEEe----------ecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHH
Confidence            885 57999998854          1113467999999999999885321                      11122222


Q ss_pred             cCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcc
Q 020815          255 IGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT  306 (321)
Q Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~  306 (321)
                      .|....-....+.+++.....+.....+.+||+|++|+.+.-++|.-|+|-.
T Consensus       249 aGa~~~~~e~~~~~~~~~~~~~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~  300 (322)
T d1d4ca2         249 AGAATRDLEMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGN  300 (322)
T ss_dssp             TTBCEECTTCCEECCCTTCEEEBTTTSSEEEEEEECGGGBCSSSTTSCCTTH
T ss_pred             cCCcceecccceEEecCceEEEECCCCCEeCceEEchhhcCCccccccchhh
Confidence            2221112223345555555455556677899999999988777888888854

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.85  E-value=7.5e-21  Score=169.64  Aligned_cols=201  Identities=20%  Similarity=0.319  Sum_probs=132.3

Q ss_pred             CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-cccch----------------------------
Q 020815           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLFS----------------------------  138 (321)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~~~----------------------------  138 (321)
                      ..+|||||||+|++|+++|++|++. |++|+||||.+..||++... +.+..                            
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~-G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~   92 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQN   92 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhh
Confidence            3479999999999999999999999 99999999998887765432 21100                            


Q ss_pred             ---hhh----c--cchHHHHHHHcCCCcccCC--------CeEE----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815          139 ---AMV----V--RKPAHIFLDELGIDYDEQD--------NYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (321)
Q Consensus       139 ---~~~----~--~~~~~~~l~~~g~~~~~~~--------~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l  197 (321)
                         ..+    .  ....++||+++|++|....        ....    ......+...+++.+. +.|+++++++++++|
T Consensus        93 ~~d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~~gv~i~~~~~v~~l  171 (308)
T d1y0pa2          93 INDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAV-KRNIDLRMNTRGIEV  171 (308)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHH-HTTCEEESSEEEEEE
T ss_pred             ccchHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHH-hccceEEEeeccchh
Confidence               000    0  0134578899998876431        1111    1123456677777776 579999999999999


Q ss_pred             EEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcc----------------------hhhhhhhh
Q 020815          198 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA----------------------TGVKRLKS  254 (321)
Q Consensus       198 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~----------------------~~~~~~~~  254 (321)
                      +.++ ++|.||.+.+          .++...+|+||.||+|||+++....                      .++.....
T Consensus       172 i~~~~G~V~Gv~~~~----------~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdg~~ma~~  241 (308)
T d1y0pa2         172 LKDDKGTVKGILVKG----------MYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAEN  241 (308)
T ss_dssp             EECTTSCEEEEEEEE----------TTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHH
T ss_pred             hhhcccccccccccc----------cccceeEeecCeEEEccCcccccHHHHHHhccchhhhcccCCCcccCHHHHHHHH
Confidence            9865 6999998854          1123468999999999999875321                      11121111


Q ss_pred             cCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCc
Q 020815          255 IGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP  305 (321)
Q Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~  305 (321)
                      .|-  .+.   .+.+......++....++.||+|.+|+.+.-.+|.-|+|.
T Consensus       242 aGa--~l~---~me~vq~~p~~~~~~~~~~~gl~a~G~~~~g~hg~nrlg~  287 (308)
T d1y0pa2         242 AGG--ALK---DMQYIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGG  287 (308)
T ss_dssp             TTC--CEE---CTTCBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTT
T ss_pred             cCC--Ccc---CccceecccceecCCCCcccceeehhhhhccccCcCCCch
Confidence            111  000   0000001112234466788999999998888889889987

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.81  E-value=1.1e-19  Score=162.86  Aligned_cols=196  Identities=21%  Similarity=0.315  Sum_probs=132.1

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc----------------hh------------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF----------------SA------------  139 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~----------------~~------------  139 (321)
                      +++||||||+|++|++||++|++. |++|+||||.+..||++.. +|.+.                ..            
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~-G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~   96 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ   96 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccc
Confidence            479999999999999999999999 9999999999887766532 22110                00            


Q ss_pred             -------hhcc--chHHHHHHHcCCCcccCC--------CeEEE----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815          140 -------MVVR--KPAHIFLDELGIDYDEQD--------NYVVI----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (321)
Q Consensus       140 -------~~~~--~~~~~~l~~~g~~~~~~~--------~~~~~----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~  198 (321)
                             .+..  ...++|++++|++|+...        .....    .....+...|.++++ +.|+++++++++++++
T Consensus        97 ~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~-~~g~~i~~~~~v~~l~  175 (317)
T d1qo8a2          97 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAK-EQGIDTRLNSRVVKLV  175 (317)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHH-HTTCCEECSEEEEEEE
T ss_pred             cchhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhh-hccceeeeccchhhee
Confidence                   0000  134578899999886431        11111    123567788888876 6799999999999998


Q ss_pred             EE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcc----------------------hhhhhhhhc
Q 020815          199 VK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA----------------------TGVKRLKSI  255 (321)
Q Consensus       199 ~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~----------------------~~~~~~~~~  255 (321)
                      .+ +++|.||.+.+          .++....+.||.||+|||+++....                      .+++.....
T Consensus       176 ~~~~g~V~Gv~~~~----------~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~  245 (317)
T d1qo8a2         176 VNDDHSVVGAVVHG----------KHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEI  245 (317)
T ss_dssp             ECTTSBEEEEEEEE----------TTTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSCHHHHHHHHT
T ss_pred             ecccccceeeEeec----------ccceEEEEeccceEEeccccccCHHHHHHhhhccccccccCCCCcCcHHHHHHHHc
Confidence            74 67999998864          2224467999999999999874221                      112222222


Q ss_pred             C-------CcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCC
Q 020815          256 G-------MIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG  304 (321)
Q Consensus       256 g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~  304 (321)
                      |       +++..+        .....++....+.+||+|.+|+.+.-++|.-|.|
T Consensus       246 Ga~l~~me~vq~~~--------~~~~~~~d~~~~~i~gl~aaGe~~~g~hG~nrlg  293 (317)
T d1qo8a2         246 GASMTDIDWVQAAI--------NTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLG  293 (317)
T ss_dssp             TBCEESTTCEEECB--------CTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCT
T ss_pred             CCeecCCcceeecc--------CCccEEeCCCCCEECCEeehhhhccCCCCCCccc
Confidence            2       111111        1122234456678999999999988888888876

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.76  E-value=1.6e-18  Score=156.00  Aligned_cols=143  Identities=19%  Similarity=0.165  Sum_probs=103.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc--------------h---------------h
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------------S---------------A  139 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~--------------~---------------~  139 (321)
                      .|||||||+|++||+||++|+++ |++|+||||....+|++. ..|.+.              .               .
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~-G~~V~liEK~~~~~g~S~~a~GGi~a~~~~~~~~~~ds~~~~~~d~~~~g~~~~~~   83 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQ   83 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCSCH
T ss_pred             ecCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCCCCCCchhhccchHhhhccccccCCCCCHHHHHHHHHHhhcccccH
Confidence            58999999999999999999999 999999999876555432 222110              0               0


Q ss_pred             ----hhc--cchHHHHHHHcCCCcccCCCeEE---------------------------------E-----ecHHHHHHH
Q 020815          140 ----MVV--RKPAHIFLDELGIDYDEQDNYVV---------------------------------I-----KHAALFTST  175 (321)
Q Consensus       140 ----~~~--~~~~~~~l~~~g~~~~~~~~~~~---------------------------------~-----~~~~~~~~~  175 (321)
                          .+.  ....+.||.+++++|+.......                                 .     .....+...
T Consensus        84 ~~v~~~~~~~~~~i~~l~~~g~~f~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~r~~~~~~~~G~~i~~~  163 (336)
T d2bs2a2          84 KVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFA  163 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCccccccccccccccccccccccccccccceecccCCCcceeeeEeecCCCHHHHHHH
Confidence                000  01345778889998875422110                                 0     013456677


Q ss_pred             HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      |.+++. +.|++++.++.+++++.+++++.++...+.         .+|+..++.||.||+|||+++.
T Consensus       164 l~~~~~-~~gv~i~~~~~~~~li~~~~~v~g~~~~~~---------~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         164 VANECL-KLGVSIQDRKEAIALIHQDGKCYGAVVRDL---------VTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHH-HHTCEEECSEEEEEEEEETTEEEEEEEEET---------TTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHH-hccccccceeeeeecccccccccceeEEec---------cCCcEEEEecCeEEEecccccc
Confidence            777776 689999999999999999999999887531         3346678999999999999874

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.2e-18  Score=155.90  Aligned_cols=146  Identities=25%  Similarity=0.300  Sum_probs=105.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc-cCcccc------------------------hhhh--
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW-LGGQLF------------------------SAMV--  141 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~-~~g~~~------------------------~~~~--  141 (321)
                      ++||||||+|+|||+||++|++. +|.+|+||||....+|++. ..|.+.                        +..+  
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v~   84 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD   84 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHHH
Confidence            68999999999999999999873 3789999999876655543 222110                        0000  


Q ss_pred             --c--cchHHHHHHHcCCCcccCCCeEE-------------E----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815          142 --V--RKPAHIFLDELGIDYDEQDNYVV-------------I----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (321)
Q Consensus       142 --~--~~~~~~~l~~~g~~~~~~~~~~~-------------~----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~  200 (321)
                        .  ....++||.++|++|+.......             .    .........++++..+..+++++.++.+++|+.+
T Consensus        85 ~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d  164 (311)
T d1kf6a2          85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD  164 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE
T ss_pred             HHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEec
Confidence              0  11356889999999876522110             0    1124566677777777789999999999999999


Q ss_pred             CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      +++|.|+...+.         .+|+...+.||.||+||||++..
T Consensus       165 ~g~v~Gvv~~~~---------~~g~~~~~~AkaVILATGG~g~~  199 (311)
T d1kf6a2         165 DGHVRGLVAMNM---------MEGTLVQIRANAVVMATGGAGRV  199 (311)
T ss_dssp             TTEEEEEEEEET---------TTTEEEEEECSCEEECCCCCGGG
T ss_pred             CCcceeEEEEEc---------CCCcEEEEECCEEEEcCCCcccc
Confidence            999999987531         23355788999999999998744

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.76  E-value=2.7e-18  Score=148.80  Aligned_cols=187  Identities=17%  Similarity=0.216  Sum_probs=119.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc---c-------cchh-----------hh---ccch
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---Q-------LFSA-----------MV---VRKP  145 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g---~-------~~~~-----------~~---~~~~  145 (321)
                      .+||||||||++|+.||+.|++. |++|+||||++.+|......+   +       ....           .+   ....
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~-G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccc
Confidence            58999999999999999999999 999999999988763211100   0       0000           00   1123


Q ss_pred             HHHHHHHcCCCcccCCC--eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC--EEEEEEEeecceecccCCC
Q 020815          146 AHIFLDELGIDYDEQDN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQ  221 (321)
Q Consensus       146 ~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~--~v~gv~~~~~~~~~~~~~~  221 (321)
                      ..+++..++..+.....  ++.......+.+.|.+.+. +.|++++++++|+++...++  .+..+...           
T Consensus        83 ~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~-~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~-----------  150 (253)
T d2gqfa1          83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECD-KYGAKILLRSEVSQVERIQNDEKVRFVLQV-----------  150 (253)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHH-HHTCEEECSCCEEEEEECCSCSSCCEEEEE-----------
T ss_pred             hhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHH-HcCCCeecCceEEEEEeecCCceeEEEEec-----------
Confidence            45677888887765433  2223345677788877776 67999999999999987643  22222221           


Q ss_pred             CCCCceEEEcCeEEEcCCCCCCC--c--chhhhhhhhcCC--cccccCCcee-ecccccchhhcccccccccccccccch
Q 020815          222 SCMDPNVMEAKVVVSSCGHDGPF--G--ATGVKRLKSIGM--IEEVPGMKAL-DMNSAEDAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       222 ~~g~~~~i~a~~VI~AtG~~~~~--~--~~~~~~~~~~g~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~pg~~~~g~~~  294 (321)
                         +..+++||+||+|||+.+.+  +  .+++..+..+++  +++.|...+- .........+.  ....||+|++|...
T Consensus       151 ---~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~e--s~~~~gl~~~ge~l  225 (253)
T d2gqfa1         151 ---NSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTME--SNQVSGLYFIGEVL  225 (253)
T ss_dssp             ---TTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCB--BSSSTTEEECGGGB
T ss_pred             ---CCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchh--hhcCCCcEEeeeEE
Confidence               23789999999999987632  1  256777777877  3343322221 11111111111  23579999988644

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=6.7e-18  Score=152.05  Aligned_cols=216  Identities=21%  Similarity=0.341  Sum_probs=131.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc--------------------------hhhh
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------------------------SAMV  141 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~--------------------------~~~~  141 (321)
                      ++|||||||+|+|||+||++|+++ |.+|+||||.+..++++. ..|.+.                          ++.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~-G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~~~   84 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA   84 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHT-TCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHc-CCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCHHH
Confidence            379999999999999999999999 999999999876665542 222110                          0000


Q ss_pred             c----c--chHHHHHHHcCCCcccCCC--e-----------------EEEe-----cHHHHHHHHHHHHHcCCCcEEEcC
Q 020815          142 V----R--KPAHIFLDELGIDYDEQDN--Y-----------------VVIK-----HAALFTSTIMSKLLARPNVKLFNA  191 (321)
Q Consensus       142 ~----~--~~~~~~l~~~g~~~~~~~~--~-----------------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~  191 (321)
                      .    .  ...++||+++|++|++..+  +                 ....     ....+...|.+++. +.+++++.+
T Consensus        85 v~~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~-~~~v~~~~~  163 (330)
T d1neka2          85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSE  163 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHH-HTTCEEECS
T ss_pred             HHHHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHH-hcCCeEEEE
Confidence            0    0  1356889999999876421  0                 1111     13567788888886 679999999


Q ss_pred             ceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcc--------h--hhhhhhhcCC-cc
Q 020815          192 VAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA--------T--GVKRLKSIGM-IE  259 (321)
Q Consensus       192 ~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~--------~--~~~~~~~~g~-~~  259 (321)
                      +.+.+++.+ ++++.++...+.         .+++...+.|+.||+|||+++....        +  ++......|. ..
T Consensus       164 ~~~~~l~~~~~~~~~g~~~~~~---------~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~a~~aGa~l~  234 (330)
T d1neka2         164 WYALDLVKNQDGAVVGCTALCI---------ETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQ  234 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEET---------TTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEE
T ss_pred             EEEEEeeeeccccceeeeeEEc---------cCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHHHHHHcCCCcc
Confidence            999999874 567777665431         2345678999999999999874322        1  2222222222 00


Q ss_pred             cccCCceeecccccchhhc--c-cccccccccccccchh-hcCCCCCCCc-ceeeeeeecchh
Q 020815          260 EVPGMKALDMNSAEDAIVR--L-TREVVPGMIVTGMEVA-EIDGAPRMGP-TFGAMMISGQKA  317 (321)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~--~-~~~~~pg~~~~g~~~~-~~~g~~~~~~-~~~~~~~~~~~~  317 (321)
                      ...  .+.+.+.....+..  . ...++||+|..|+.+. .++|.=|.+. ..-..+..|++|
T Consensus       235 d~~--~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~a  295 (330)
T d1neka2         235 DMM--GGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAA  295 (330)
T ss_dssp             SEC--CBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHH
T ss_pred             ccc--cccccccccceeecccCCCceecccccccCcccccccccccccccccHHHHHHHHHHH
Confidence            001  11111111111111  1 2236899999998764 5677666654 222334444444

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.2e-17  Score=148.70  Aligned_cols=144  Identities=26%  Similarity=0.402  Sum_probs=90.4

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-cccc---------h---------------hh---
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLF---------S---------------AM---  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~~---------~---------------~~---  140 (321)
                      ++|||||||+|++||+||++|++. | +|+||||.+..||+++.. |.+.         .               +.   
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~-g-~V~llEK~~~~gG~s~~a~Ggi~a~~~~~D~~~~~~~d~~~~~~~~~~~~~~~   83 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQ-H-QVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVE   83 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTT-S-CEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             ccCCEEEECccHHHHHHHHHhhcC-C-CEEEEECCCCCCCchHHhCcceEEEECCCCCHHHHHHHhhhcccCcccHHHHH
Confidence            479999999999999999999987 7 999999998777765432 2110         0               00   


Q ss_pred             -hc--cchHHHHHHHcCCCcccCCC------eEE----------Ee-----cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815          141 -VV--RKPAHIFLDELGIDYDEQDN------YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAED  196 (321)
Q Consensus       141 -~~--~~~~~~~l~~~g~~~~~~~~------~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (321)
                       +.  ..+..+|+.+++++|+....      +..          ..     ....+...++++..++.+++++.++.+++
T Consensus        84 ~~~~~~~e~~~~l~~~g~~f~~~~~~~~~~~~~~~~~gg~s~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  163 (305)
T d1chua2          84 FVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVD  163 (305)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEE
T ss_pred             HHHHhcchhhhHHHhcCCccccccccccccchhccccCCCccCeEEecCCCCCchhHHHHHHHHHhccCcceeceeEEEE
Confidence             00  01345788889988754310      000          00     01122233344555578999999999999


Q ss_pred             EEEECC-------EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          197 LIVKGG-------RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       197 l~~~~~-------~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      |+.+++       +|.|+...+.         .+++...+.+|.||+|||+++.
T Consensus       164 Li~~~~~~~~~~~rv~Gv~~~~~---------~~g~~~~~~ak~VilAtGG~~~  208 (305)
T d1chua2         164 LIVSDKIGLPGTRRVVGAWVWNR---------NKETVETCHAKAVVLATGGASK  208 (305)
T ss_dssp             EEEGGGTTCCSSCBEEEEEEEET---------TTTEEEEEECSEEEECCCCCGG
T ss_pred             EEEEcCcccccCceEEEEEEEeC---------CCCcEEEEeecceEEeeecccc
Confidence            998764       7999987531         1234567899999999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.65  E-value=3.6e-16  Score=136.31  Aligned_cols=135  Identities=17%  Similarity=0.160  Sum_probs=87.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhc------------------cchHHHHHH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV------------------RKPAHIFLD  151 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~------------------~~~~~~~l~  151 (321)
                      +|||||||||++|+++|++|+++ |.+|+||||+...+|+++..+.+......                  .....+...
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~-G~~V~vlE~~~~~~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   82 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYA   82 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcccccccccccccccccccccchhhhhhhhhcccccccccc
Confidence            69999999999999999999999 99999999987666655543322111000                  000001111


Q ss_pred             HcCCC--cccCCCeE-------------------------------------------E-----EecHHHHHHHHHHHHH
Q 020815          152 ELGID--YDEQDNYV-------------------------------------------V-----IKHAALFTSTIMSKLL  181 (321)
Q Consensus       152 ~~g~~--~~~~~~~~-------------------------------------------~-----~~~~~~~~~~l~~~~~  181 (321)
                      ..+++  +.....+.                                           +     ..+...+...|.+.+.
T Consensus        83 ~~g~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~  162 (276)
T d1ryia1          83 LSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAK  162 (276)
T ss_dssp             HHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHHH
T ss_pred             ccccccccccccceeeeeecccccccccccccccccccccccccccCcccccceeEEEEeccceeeecccchhHHHHHHH
Confidence            11211  11100000                                           0     1244677788777776


Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       +.|++|+++++|++|..+ +++++|.+..               .+|+||.||+|+|+++
T Consensus       163 -~~Gv~i~~~~~V~~i~~~-~~~~~V~t~~---------------g~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         163 -MLGAEIFEHTPVLHVERD-GEALFIKTPS---------------GDVWANHVVVASGVWS  206 (276)
T ss_dssp             -HTTCEEETTCCCCEEECS-SSSEEEEETT---------------EEEEEEEEEECCGGGT
T ss_pred             -HcCCEEecceEEEeEEee-cceEEEecCC---------------eEEEcCEEEECCCccH
Confidence             689999999999998765 4466777732               5799999999999654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.63  E-value=1e-15  Score=133.89  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=87.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc--cccCcccch----------hhhcc--------------
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG--AWLGGQLFS----------AMVVR--------------  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~--~~~~g~~~~----------~~~~~--------------  143 (321)
                      +|||||||||++|+++|++|+++ |++|+|||+...+++.  +........          .+...              
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~-G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            79999999999999999999999 9999999997655321  111111000          00000              


Q ss_pred             --------------------chHHHHHHHcCCCccc---------------CCCeE-------EEecHHHHHHHHHHHHH
Q 020815          144 --------------------KPAHIFLDELGIDYDE---------------QDNYV-------VIKHAALFTSTIMSKLL  181 (321)
Q Consensus       144 --------------------~~~~~~l~~~g~~~~~---------------~~~~~-------~~~~~~~~~~~l~~~~~  181 (321)
                                          ....+.+..++.++..               ...+.       ...+...+...|.+.+.
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~  161 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccc
Confidence                                0011222333332210               00000       02345678888888876


Q ss_pred             cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                       +.|++++++++|.+|..+++++ .|.+.               ..+|+|+.||+|+|++
T Consensus       162 -~~Gv~i~~~~~V~~i~~~~~~v-~V~t~---------------~g~i~a~~VViAaG~~  204 (281)
T d2gf3a1         162 -ARGAKVLTHTRVEDFDISPDSV-KIETA---------------NGSYTADKLIVSMGAW  204 (281)
T ss_dssp             -HTTCEEECSCCEEEEEECSSCE-EEEET---------------TEEEEEEEEEECCGGG
T ss_pred             -cccccccCCcEEEEEEEECCEE-EEEEC---------------CcEEEcCEEEECCCCc
Confidence             6899999999999999988865 45553               2579999999999954

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.62  E-value=2.6e-15  Score=132.80  Aligned_cols=134  Identities=26%  Similarity=0.309  Sum_probs=90.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCC--CCCccccCcccchh----------------------------
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS--PGGGAWLGGQLFSA----------------------------  139 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~--~gg~~~~~g~~~~~----------------------------  139 (321)
                      .||||||||++|+++|++|+++ |. +|+||||+..  .+|+++....+...                            
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~-G~~~V~liE~~~~~~~~gas~~~~G~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   80 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTR-GWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVSC   80 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEETTEES
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CCCcEEEEeCCCCCCCccccccccceeccCCCCHHHHHHHHHHHHHHHhhhhccccc
Confidence            4999999999999999999999 85 6999999853  24444432211000                            


Q ss_pred             ------hhc--c-------chHHHHHHHcCCCcccC--------------CC--eE------EEecHHHHHHHHHHHHHc
Q 020815          140 ------MVV--R-------KPAHIFLDELGIDYDEQ--------------DN--YV------VIKHAALFTSTIMSKLLA  182 (321)
Q Consensus       140 ------~~~--~-------~~~~~~l~~~g~~~~~~--------------~~--~~------~~~~~~~~~~~l~~~~~~  182 (321)
                            +..  .       ....+.++..+.+++..              ..  ..      -..+...+...|.+.+. 
T Consensus        81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~l~~~l~~~a~-  159 (305)
T d1pj5a2          81 FNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTE-  159 (305)
T ss_dssp             EECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHH-
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHhhcccccccchHHhhhhcccccccccccceecccccccchhhhhhhHHhhhh-
Confidence                  000  0       01112333344432210              00  00      12355778888888877 


Q ss_pred             CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      +.|++++++++|++|..+++++.+|.+..               .+|+||.||+|+|.+
T Consensus       160 ~~gv~i~~~~~V~~i~~~~~~v~~V~T~~---------------g~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         160 SAGVTYRGSTTVTGIEQSGGRVTGVQTAD---------------GVIPADIVVSCAGFW  203 (305)
T ss_dssp             HTTCEEECSCCEEEEEEETTEEEEEEETT---------------EEEECSEEEECCGGG
T ss_pred             cccccccCCceEEEEEEeCCEEEEEeccc---------------eeEECCEEEEecchh
Confidence            68999999999999999999999998842               579999999999944

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=2.3e-15  Score=137.84  Aligned_cols=212  Identities=20%  Similarity=0.266  Sum_probs=128.8

Q ss_pred             cccEEEECCChHHHHHHHHhhc------CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCccc----
Q 020815           90 DTDVVVVGAGSAGLSCAYELSK------NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE----  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~------~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~----  159 (321)
                      +||||||||||||++||+.|++      . |++|+||||+..+|...+.++.+....+.. -...+..+ +.+...    
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~-Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~-l~p~~~~~-~~~~~~~~~~  108 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEK-DLRVCLVEKAAHIGAHTLSGACLDPRAFEE-LFPDWKEK-GAPLNTPVTE  108 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTC-CCCEEEECSSSSTTTTCCCCCEECTHHHHH-HCTTHHHH-TCCCCEECCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcC-CCEEEEEcCCCCCCCCccccccccHHHHHH-Hccchhhh-ccccccceec
Confidence            7999999999999999999997      7 999999999998887655444332211100 00001111 111000    


Q ss_pred             ----------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceec
Q 020815          160 ----------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSM  216 (321)
Q Consensus       160 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~  216 (321)
                                            ............+...+.+++. ..++++.....+.+++.++ +.+.++...+.....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae-~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  187 (380)
T d2gmha1         109 DRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAE-ALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQK  187 (380)
T ss_dssp             EEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHH-HTTCEEETTCCEEEEEECTTSSEEEEEECCEEECT
T ss_pred             ceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHh-hccceeeeecceeeeeeccCCceeecccccccccc
Confidence                                  0001112234667778777776 6899999999999999865 555555543322111


Q ss_pred             ccCCCC-CCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815          217 NHDTQS-CMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (321)
Q Consensus       217 ~~~~~~-~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~  295 (321)
                      +...+. ......+.++..|++.|..+.+....+..+..........   ++         -...+...||++++||++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~---G~---------~sip~l~~~G~lLVGDAAG  255 (380)
T d2gmha1         188 DGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQG---GF---------QSIPKLTFPGGLLIGCSPG  255 (380)
T ss_dssp             TSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCC---GG---------GGCCCCEETTEEECTTTTC
T ss_pred             cccccccccccccccccEEEEeeeCCCcchHHHHhhhhhcccccccc---cc---------ccccccccCCeeEEecccc
Confidence            111000 0012357899999999977654432222221111111111   11         1123456799999999999


Q ss_pred             hcCCCCCCCcceeeeeeecchhcc
Q 020815          296 EIDGAPRMGPTFGAMMISGQKAAR  319 (321)
Q Consensus       296 ~~~g~~~~~~~~~~~~~~~~~~~~  319 (321)
                      .++.+...|-+++  |.||..||+
T Consensus       256 ~vnP~~g~GI~~A--m~SG~lAAe  277 (380)
T d2gmha1         256 FMNVPKIKGTHTA--MKSGTLAAE  277 (380)
T ss_dssp             CCBTTTTBCHHHH--HHHHHHHHH
T ss_pred             ccchhhcCCeeee--eccHHHHHH
Confidence            9998888888855  889999886

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=1.9e-14  Score=121.37  Aligned_cols=120  Identities=23%  Similarity=0.228  Sum_probs=80.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--cccchhhhccchHHHHHHHcCCCcccCCCeEEE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg~~~~~--g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  166 (321)
                      .|||||||||+||+.||+++++. |+||+|||++. .+|..+.+.  +......+        ..+..    ....    
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~-G~ktllit~~~~~ig~~~cnp~~gg~~kg~l--------~reid----~kG~----   64 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQSLDAVMMPFLPPKPPFPPGSLL--------ERAYD----PKDE----   64 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCSSCCCSCCCTTCHH--------HHHCC----TTCC----
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEEeccchhcccccCCccccCCCcce--------eeeee----ccch----
Confidence            59999999999999999999999 99999999863 233222111  00000000        01111    0000    


Q ss_pred             ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                       ....+...+.+.+.+..|++++.. +|++++.+++++.+|++.+              +.+|+|+.||+|||-+-
T Consensus        65 -av~a~raQ~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~--------------G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          65 -RVWAFHARAKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWE--------------GPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             -CHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETT--------------SCCEECSEEEECCTTCS
T ss_pred             -hhhhHHHHHHHHHhhhcCHHHHhc-cceeeEecccceeeEEecc--------------ccEEEEeEEEEccCcce
Confidence             011222334445556789999988 8899999999999999853              36799999999999653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=1.1e-13  Score=124.85  Aligned_cols=145  Identities=18%  Similarity=0.247  Sum_probs=91.2

Q ss_pred             CcccEEEECCChHHHHHHHHhhc----CCCCeEEEEeccCCCCCccccCccc-----------------chhh-------
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGAWLGGQL-----------------FSAM-------  140 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~----~~G~~V~liEk~~~~gg~~~~~g~~-----------------~~~~-------  140 (321)
                      .++||||||+|++||+||+.|++    . |++|+||||....|+++...+..                 ....       
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~-G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~~~~~~Ds~e~~~~d~~~~   98 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLG-GLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLD   98 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT-TCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHH
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhC-cCEEEEEeCCCCCCChhHHHHHHHHHhccccccccCccCCHHHHHHHHHHh
Confidence            37999999999999999999975    5 99999999987766554322210                 0000       


Q ss_pred             --------hc------cchHHHHHHHcCCCcccCCCe----------EEEecHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815          141 --------VV------RKPAHIFLDELGIDYDEQDNY----------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAED  196 (321)
Q Consensus       141 --------~~------~~~~~~~l~~~g~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (321)
                              +.      .....+|+.++|++|+.....          ................. ...+.+++..+.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~  177 (356)
T d1jnra2          99 MMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKM-AVGEENIYERVFIFE  177 (356)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHH-HHCGGGEECSEEEEE
T ss_pred             ccCCccHHHHHHHHHhcchhhhhHHhhCCCccccccccccccccceeccccccHHHHHHHHHHh-hhcceEEEEEEEEEE
Confidence                    00      012457888999988764221          11111112222222222 235677888888888


Q ss_pred             EEEE---CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815          197 LIVK---GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       197 l~~~---~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                      ++..   ++.+.++...+      .   .+|+...|+||.||+||||++..
T Consensus       178 l~~~~~~~~~v~~~~~~~------~---~~G~~~~i~Ak~VILATGG~~~~  219 (356)
T d1jnra2         178 LLKDNNDPNAVAGAVGFS------V---REPKFYVFKAKAVILATGGATLL  219 (356)
T ss_dssp             EEECTTCTTBEEEEEEEE------S---SSSCEEEEECSEEEECCCCBCSS
T ss_pred             eeeecccccceeeeEEEE------e---ecCcEEEeeCCEEEEcCCCcccc
Confidence            8764   35666665532      1   23355789999999999998743

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.51  E-value=8.1e-15  Score=127.04  Aligned_cols=143  Identities=17%  Similarity=0.312  Sum_probs=79.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH----HHHHHHcCCCcccCCCeEEE
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQDNYVVI  166 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~  166 (321)
                      |||+|||||++|+.||.+|++. |++|+|||+. ..||+|.+.||++++.+.....    .+....+|++....-.+...
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~-G~~V~liE~~-~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~   79 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH-NAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   79 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEecC-CCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhH
Confidence            8999999999999999999999 9999999996 5899999999999887766432    22334466653322111111


Q ss_pred             e-cHHHHH---HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815          167 K-HAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       167 ~-~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                      . +.....   ...++...++.|++++.+...  + .+.+++. |.........+.   ...+.++++|+.||+|||...
T Consensus        80 ~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~--f-~~~~~v~-v~~~~~~~~~~~---~~~~~~~i~a~~iiIATGs~P  152 (259)
T d1onfa1          80 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTAS--F-LSENRIL-IKGTKDNNNKDN---GPLNEEILEGRNILIAVGNKP  152 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCC--C-C------------------------------CBSSEEECCCCCB
T ss_pred             HhhhheeeeccccchhhhcccccceEEeeecc--c-ccccccc-cccceecccccc---CccceEEEeeeeEEEecCCCC
Confidence            1 111111   222333444679999876421  0 0111110 000000000000   011336799999999999654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.51  E-value=5.4e-15  Score=124.57  Aligned_cols=175  Identities=16%  Similarity=0.221  Sum_probs=98.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-----HHHHHHHcCCCcccCCCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-----AHIFLDELGIDYDEQDNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-----~~~~l~~~g~~~~~~~~~~  164 (321)
                      +|||||||||++|+++|+.|++. |++|+|||+....||.|...++.....+....     ....+...++.....   .
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~-G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~---~   78 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV---E   78 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE---E
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccc---e
Confidence            69999999999999999999999 99999999999999998877776655443321     112223344432211   1


Q ss_pred             EEe-c--------HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEE
Q 020815          165 VIK-H--------AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVV  235 (321)
Q Consensus       165 ~~~-~--------~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI  235 (321)
                      ... .        ...+... .+.+.+..+++++.....   ..++.......             ......++.+|.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~---~~~~~~~~~~~-------------~~~~~~~~~a~~VI  141 (221)
T d1dxla1          79 IDLAAMMGQKDKAVSNLTRG-IEGLFKKNKVTYVKGYGK---FVSPSEISVDT-------------IEGENTVVKGKHII  141 (221)
T ss_dssp             ECHHHHHHHHHHHHHHHHHH-HHHHHHHHTCEEEESCEE---EEETTEEEECC-------------SSSCCEEEECSEEE
T ss_pred             ecHHHHHHHHHHHHHHHhhH-HHHhhhcCCeEEEEeccc---ccccccccccc-------------ccccccccccceEE
Confidence            100 0        0111122 233333568888765321   22333211111             11134789999999


Q ss_pred             EcCCCCCCCcchhhhhhhhcCCcccc-cCCceeecccccchhh-cccccccccccccccch
Q 020815          236 SSCGHDGPFGATGVKRLKSIGMIEEV-PGMKALDMNSAEDAIV-RLTREVVPGMIVTGMEV  294 (321)
Q Consensus       236 ~AtG~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~pg~~~~g~~~  294 (321)
                      +|||.... ++        .+.++.+ ....++.++......+ ...+..+||+|+.|+..
T Consensus       142 iATGs~~~-gr--------~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~  193 (221)
T d1dxla1         142 IATGSDVK-GR--------TPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVI  193 (221)
T ss_dssp             ECCCEEEC-CE--------EECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTS
T ss_pred             EeECCCcc-Cc--------cccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccC
Confidence            99994321 00        0000001 0112333333322222 34567889999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.3e-13  Score=116.76  Aligned_cols=40  Identities=30%  Similarity=0.365  Sum_probs=38.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|||||||||++|++||+.|++. |++|+|||+++.+||.+
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~GG~~   44 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEA   44 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCCcce
Confidence            79999999999999999999999 99999999999998864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.47  E-value=2.4e-13  Score=114.27  Aligned_cols=177  Identities=20%  Similarity=0.217  Sum_probs=99.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      +|||||||||++|++||.+|++. |++|+|||+. .+||.|...++.+...+..........+....+........+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~-G~kV~vIEk~-~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA   80 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecC-CCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHH
Confidence            69999999999999999999999 9999999997 578888887777766554443332222222221111111111111


Q ss_pred             ------HHHH---HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          170 ------ALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       170 ------~~~~---~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                            ..+.   ...++.+.+..+++++.+..   ....+.... +....             ...++.++.+|+|+|.
T Consensus        81 ~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a---~f~~~~~~~-v~~~~-------------~~~~~~~~~iiIa~g~  143 (223)
T d1ebda1          81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEA---YFVDANTVR-VVNGD-------------SAQTYTFKNAIIATGS  143 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEE---EEEETTEEE-EEETT-------------EEEEEECSEEEECCCE
T ss_pred             HHhhHHHHHHHHHHhhHHHhhhccceeeeccEE---EEccCcccc-eeccc-------------cceEEecccEEEEcCC
Confidence                  1111   12233344578999987732   222333222 22211             2368999999999984


Q ss_pred             CCCCcchhhhhhhhcCCccccc----CCceeeccccc-chhhcccccccccccccccch
Q 020815          241 DGPFGATGVKRLKSIGMIEEVP----GMKALDMNSAE-DAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       241 ~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~pg~~~~g~~~  294 (321)
                      .....         +|..+...    ...++.++... -.+..+.+...||+|++||.+
T Consensus       144 ~p~~~---------~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~  193 (223)
T d1ebda1         144 RPIEL---------VGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIV  193 (223)
T ss_dssp             EECCB---------SCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGS
T ss_pred             Ccccc---------ccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccC
Confidence            32110         11111111    01122233222 122245667899999999986

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=9.9e-14  Score=117.91  Aligned_cols=183  Identities=15%  Similarity=0.155  Sum_probs=99.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC--------CCCccccCcccchhhhccchHH----HHHHHcCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--------PGGGAWLGGQLFSAMVVRKPAH----IFLDELGIDY  157 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~--------~gg~~~~~g~~~~~~~~~~~~~----~~l~~~g~~~  157 (321)
                      +|||+||||||+|++||++|++. |++|+|||+...        .||.|...++++.+.+......    .....+|+.+
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~-G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~   81 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKL   81 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG-CCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhcccccc
Confidence            79999999999999999999999 999999997643        4666666777776665443221    2222344443


Q ss_pred             ccCCCeE--E-EecHHHHH---HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815          158 DEQDNYV--V-IKHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (321)
Q Consensus       158 ~~~~~~~--~-~~~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a  231 (321)
                      .......  . ..+.....   ..-.+.+.+..+|+++.+..   .....+.+. +..            ..+....+.+
T Consensus        82 ~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~---~~~~~~~~~-v~~------------~~~~~~~i~a  145 (235)
T d1h6va1          82 EDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYG---KFIGPHKIM-ATN------------NKGKEKVYSA  145 (235)
T ss_dssp             CSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEE---EEEETTEEE-EEC------------TTSCEEEEEE
T ss_pred             ccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEE---eecccccee-ccc------------cccccccccc
Confidence            3221110  0 01111111   11122333456899987742   233444322 211            1124467999


Q ss_pred             CeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeeccc--ccchhhcccccccccccccccch
Q 020815          232 KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNS--AEDAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       232 ~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pg~~~~g~~~  294 (321)
                      +.+++++|.......-.......+++     ...++.++.  ..-.+..+.+...||+|++||.+
T Consensus       146 ~~ivi~~G~~p~~~~i~~~~~~~~~l-----~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~  205 (235)
T d1h6va1         146 ERFLIATGERPRYLGIRDSCTRTIGL-----ETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDIL  205 (235)
T ss_dssp             EEEEECCCEEECCCSSEEESCTTSCC-----TTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGB
T ss_pred             ccceeecCCCceeEEEeeccceeecc-----ccceeeeccccCccccCCccccCCCCEEEEEecc
Confidence            99999999554211000000001110     011122222  11222245677899999999976

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.44  E-value=3.5e-14  Score=123.11  Aligned_cols=66  Identities=14%  Similarity=0.111  Sum_probs=54.6

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHHHHcCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDELGI  155 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l~~~g~  155 (321)
                      .+||+||||||++|+.+|+.|++. |.+|+|||+.+..||.|.+.+|.+.+.+.... ....+..+..
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~-G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~  107 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSG  107 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhh
Confidence            479999999999999999999999 99999999999999999998988877665542 3344444433

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=9.3e-14  Score=116.71  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~  144 (321)
                      +|||+|||||++|+++|+.|++. |++|+|||++ .+||+|.+.++.+.+.+...
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~-G~kV~iiE~~-~~GGtc~~~gc~p~k~l~~~   54 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAK-ELGGTCVNVGCVPKKVMWHA   54 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecc-CcCCeEecccccccccchhh
Confidence            69999999999999999999999 9999999996 68999988888887766544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=2.1e-13  Score=119.43  Aligned_cols=138  Identities=20%  Similarity=0.160  Sum_probs=82.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------ccc-
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YDE-  159 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~~-  159 (321)
                      ++||+|||||++||++|+.|++. |++|+||||.+.........     .........+.|+++|+.         ... 
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~-G~~v~vlE~~~~~~~~~~~~-----~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~   75 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTPDYVLGRIR-----AGVLEQGMVDLLREAGVDRRMARDGLVHEGV   75 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSCHHHHHTCCC-----CCEECHHHHHHHHHTTCCHHHHHHCEEESCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCCce-----EEEECHHHHHHHHHcCchHHHHhhcccccce
Confidence            57999999999999999999999 99999999975321000000     011223344555555552         110 


Q ss_pred             ----C-------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCC
Q 020815          160 ----Q-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS  222 (321)
Q Consensus       160 ----~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~  222 (321)
                          .             .......+...+.+.|++.+.+..+..+ .....+.....++....|....           
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~-----------  143 (292)
T d1k0ia1          76 EIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTV-YQAAEVRLHDLQGERPYVTFER-----------  143 (292)
T ss_dssp             EEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEE-SSCEEEEEECTTSSSCEEEEEE-----------
T ss_pred             EEEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEE-EcceeeeeeeeccCceEEEEec-----------
Confidence                0             1112233456777888888875555444 4445555444433222333321           


Q ss_pred             CCCceEEEcCeEEEcCCCCCCCc
Q 020815          223 CMDPNVMEAKVVVSSCGHDGPFG  245 (321)
Q Consensus       223 ~g~~~~i~a~~VI~AtG~~~~~~  245 (321)
                      +++..+++||+||.|+|..+...
T Consensus       144 ~g~~~~i~a~~vVgADG~~S~vR  166 (292)
T d1k0ia1         144 DGERLRLDCDYIAGCDGFHGISR  166 (292)
T ss_dssp             TTEEEEEECSEEEECCCTTCSTG
T ss_pred             CCcEEEEEeCEEEECCCCCCccc
Confidence            12346799999999999777544

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.40  E-value=4.9e-13  Score=112.52  Aligned_cols=177  Identities=18%  Similarity=0.227  Sum_probs=98.2

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHHHHc------CCCcccCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDEL------GIDYDEQD  161 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l~~~------g~~~~~~~  161 (321)
                      .+||+||||||++|+.+|+.|++. |++|+|||++ .+||.|.+.+|.+.+.+.... ..+.+.++      ++......
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR   81 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC-CCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccce
Confidence            379999999999999999999999 9999999997 689999888888877765543 23333332      22211110


Q ss_pred             -CeEE-EecHHHHH---HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815          162 -NYVV-IKHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (321)
Q Consensus       162 -~~~~-~~~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~  236 (321)
                       .+.. ......+.   ..-...+.+..+++++.+...   ..+...   +..               ...++.++.||+
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~---~~~~~~---~~~---------------~~~~i~a~~vii  140 (220)
T d1lvla1          82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK---VLDGKQ---VEV---------------DGQRIQCEHLLL  140 (220)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE---EEETTE---EEE---------------TTEEEECSEEEE
T ss_pred             ehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeec---ccCccc---ccc---------------cceeEeeceeeE
Confidence             0000 00001111   111223334578888876322   112221   111               237899999999


Q ss_pred             cCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccch
Q 020815          237 SCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       237 AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~  294 (321)
                      |||.......   +.....+.   .....+...+...-.+..+.+...|++|++|+..
T Consensus       141 AtG~~p~~lp---~~~~~~~~---~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~  192 (220)
T d1lvla1         141 ATGSSSVELP---RRPRTKGF---NLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVA  192 (220)
T ss_dssp             CCCEEECCBT---EEECCSSS---SGGGSCCCEETTEECCCTTCBCSSTTEEECGGGG
T ss_pred             cCCCCccccc---ccccccCC---cceeeehhhcCCcccccchhhcCCCCEEEEEEeC
Confidence            9995432110   00000000   0001111122222222344567789999999876

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.39  E-value=1.5e-12  Score=114.75  Aligned_cols=133  Identities=19%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC---cccc---hhhhccchHHHHHHHcCCCcccCCCe
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG---GQLF---SAMVVRKPAHIFLDELGIDYDEQDNY  163 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~---g~~~---~~~~~~~~~~~~l~~~g~~~~~~~~~  163 (321)
                      ++||||||||++||++|++|.+. |++|+|+||++.+||.....   |...   ............+......    .. 
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~-G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~----~~-   80 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWT----ER-   80 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCC----BS-
T ss_pred             CCCEEEECccHHHHHHHHHHHhC-CCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCc----cc-
Confidence            68999999999999999999999 99999999999998863211   1100   0000000001111111110    01 


Q ss_pred             EEEecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          164 VVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                        .....++.++|.+.+. +.++  .|+++++|+++..+++ ...-|.+.              +..++++|+||.|+|.
T Consensus        81 --~p~~~e~~~Yl~~~a~-~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~--------------~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          81 --YASQPEILRYINFVAD-KFDLRSGITFHTTVTAAAFDEATNTWTVDTN--------------HGDRIRARYLIMASGQ  143 (298)
T ss_dssp             --SCBHHHHHHHHHHHHH-HTTGGGGEECSCCEEEEEEETTTTEEEEEET--------------TCCEEEEEEEEECCCS
T ss_pred             --cCccchHHHHHHHHHH-HcCCcccccCCcEEEEEEEecCCCceeeccc--------------cccccccceEEEeecc
Confidence              1234555555544443 5677  5999999999998653 33445543              2368999999999997


Q ss_pred             CCCCc
Q 020815          241 DGPFG  245 (321)
Q Consensus       241 ~~~~~  245 (321)
                      .+...
T Consensus       144 ls~~~  148 (298)
T d1w4xa1         144 LSDAL  148 (298)
T ss_dssp             CCCCT
T ss_pred             ccccc
Confidence            76543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.37  E-value=5.6e-13  Score=112.10  Aligned_cols=39  Identities=31%  Similarity=0.499  Sum_probs=35.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      +||||||||||||++||++|++. |++|+|||+....++.
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~-G~~V~viE~~~~~~~~   41 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGK   41 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBCTTSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccCCCcc
Confidence            69999999999999999999999 9999999997655443

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-13  Score=120.37  Aligned_cols=39  Identities=33%  Similarity=0.626  Sum_probs=37.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      ||+|||||++||+||++|++. |++|+|||+++.+||.++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~-G~~V~VlE~~~~~GGr~~   39 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGRTY   39 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT-TCCEEEEESSSSSBTTCC
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcceee
Confidence            899999999999999999999 999999999999998664

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.37  E-value=3.3e-13  Score=117.48  Aligned_cols=38  Identities=34%  Similarity=0.571  Sum_probs=36.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ||+|||||++||+||++|++. |++|+|+|+++.+||.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GG~~   39 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGGAV   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSBTTC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCCceE
Confidence            899999999999999999999 99999999999998864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.4e-13  Score=112.65  Aligned_cols=178  Identities=18%  Similarity=0.243  Sum_probs=97.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHH-HHHHH---cCCCcccC-CCeE
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-IFLDE---LGIDYDEQ-DNYV  164 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~-~~l~~---~g~~~~~~-~~~~  164 (321)
                      +|||||||||++|+++|.+|++. |++|+|||+. ..||.|.+.++.+.+.+...... +...+   +....... ..+.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~-G~kV~vIEk~-~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAEL-GARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR   80 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCEEEEEecc-CCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhh
Confidence            69999999999999999999999 9999999996 68888888888777666544322 11111   11111110 0000


Q ss_pred             EEe-cHH----HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          165 VIK-HAA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       165 ~~~-~~~----~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ... +..    .+.......+ +..+++++.+....   ...+.+ .+..               ....+.++.+++++|
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~~-~~~gV~~i~G~a~~---~~~~~~-~~~~---------------~~~~~~~~~~~iatG  140 (221)
T d3grsa1          81 VIKEKRDAYVSRLNAIYQNNL-TKSHIEIIRGHAAF---TSDPKP-TIEV---------------SGKKYTAPHILIATG  140 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESCCEE---CSCSSC-EEEE---------------TTEEEECSCEEECCC
T ss_pred             hhhhhhheEEeeeccchhhhh-ccCceEEEEEeeee---ccccce-eeee---------------eccccccceeEEecC
Confidence            000 001    1112222223 35789988764221   111111 1111               236789999999999


Q ss_pred             CCCCCcchhhhhhhhcCCcccccCCceeecccccchh-hcccccccccccccccch
Q 020815          240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI-VRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       240 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pg~~~~g~~~  294 (321)
                      .......-......++++     ...++.+++....+ ..+.+...||+|++||..
T Consensus       141 ~~p~vp~~r~p~~~~l~L-----~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~  191 (221)
T d3grsa1         141 GMPSTPHERVPNTKDLSL-----NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC  191 (221)
T ss_dssp             EEECCCCTEEESCTTTTG-----GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGG
T ss_pred             ccccCCCccccCCCCcCc-----hhcCcEECCCccEEeCCCccccCCcEEEEEEcc
Confidence            543221100000111111     11123333333222 345677899999999976

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=1.5e-11  Score=106.21  Aligned_cols=133  Identities=23%  Similarity=0.295  Sum_probs=80.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------c---
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y---  157 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~---  157 (321)
                      .||+|||||++||++|+.|++. |+ +|+|+||.+.+.....  +     ........+.|+++++.         .   
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~~~~~g~--~-----i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   73 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSEIRPLGV--G-----INIQPAAVEALAELGLGPALAATAIPTHEL   73 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSSCCCCSC--E-----EEECHHHHHHHHHTTCHHHHHHHSEEECEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCCce--E-----EEECHHHHHHHHHcCchhhhHhhhcccccc
Confidence            5999999999999999999999 96 8999999876643211  0     11122233344444431         0   


Q ss_pred             ---ccCC---------------CeEEEecHHHHHHHHHHHH-HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815          158 ---DEQD---------------NYVVIKHAALFTSTIMSKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (321)
Q Consensus       158 ---~~~~---------------~~~~~~~~~~~~~~l~~~~-~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~  218 (321)
                         +..+               ..............+.... ....++.+..+++++.+..+++.+... +.+       
T Consensus        74 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~-~~~-------  145 (288)
T d3c96a1          74 RYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIG-ARD-------  145 (288)
T ss_dssp             EEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEE-EEE-------
T ss_pred             eeEcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEE-EEc-------
Confidence               0000               0111112222222222222 224688999999999998888876533 322       


Q ss_pred             CCCCCCCceEEEcCeEEEcCCCCC
Q 020815          219 DTQSCMDPNVMEAKVVVSSCGHDG  242 (321)
Q Consensus       219 ~~~~~g~~~~i~a~~VI~AtG~~~  242 (321)
                         .+++..++.+|+||.|+|.++
T Consensus       146 ---g~~~~~~~~ad~vi~ADG~~S  166 (288)
T d3c96a1         146 ---GHGKPQALGADVLVGADGIHS  166 (288)
T ss_dssp             ---TTSCEEEEEESEEEECCCTTC
T ss_pred             ---CCCCeEEEeeceeeccCCccc
Confidence               122447899999999999554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.33  E-value=1.3e-12  Score=115.44  Aligned_cols=40  Identities=48%  Similarity=0.741  Sum_probs=37.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..+|+|||||++||+||+.|++. |++|+|||+++.+||.+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~~GG~~   69 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGRV   69 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCee
Confidence            35899999999999999999999 99999999999998864

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=4.9e-13  Score=113.76  Aligned_cols=186  Identities=19%  Similarity=0.247  Sum_probs=96.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccch-HHHHH---HHcCCCcccCC---
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFL---DELGIDYDEQD---  161 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~~l---~~~g~~~~~~~---  161 (321)
                      .+|+||||||+|++||+++++.  .+++|+|||+. .+||.|.+.||++.+.+.... ..+.+   ..+|+.+...+   
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~   80 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   80 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCcee
Confidence            4899999999999999988763  15789999995 689999988998876654432 22222   22343322111   


Q ss_pred             CeEEE-ecHHHHH----HHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEE
Q 020815          162 NYVVI-KHAALFT----STIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVV  235 (321)
Q Consensus       162 ~~~~~-~~~~~~~----~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI  235 (321)
                      ++... .+...+.    ..+.+.+ +..+++++.+... -+.... .....+....          .+++..++++|.||
T Consensus        81 d~~~~~~~~~~v~~~~~~~~~~~~-~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~----------~dg~~~~i~ad~vi  148 (233)
T d1xdia1          81 SLPQIHARVKTLAAAQSADITAQL-LSMGVQVIAGRGE-LIDSTPGLARHRIKATA----------ADGSTSEHEADVVL  148 (233)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESEEE-ECCSSSCCSSEEEEEEC----------TTSCEEEEEESEEE
T ss_pred             eeeeeccccceeeeeeecceehhh-cccceeEEECccc-ccccccccccceEEEEe----------cCCceeeeecceee
Confidence            01000 0011111    2222333 3679999877321 111000 0001122211          23355789999999


Q ss_pred             EcCCCCCCCcchhh-hhhhhcCCcccccCCceeecccccchhh-cccccccccccccccch
Q 020815          236 SSCGHDGPFGATGV-KRLKSIGMIEEVPGMKALDMNSAEDAIV-RLTREVVPGMIVTGMEV  294 (321)
Q Consensus       236 ~AtG~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~~~g~~~  294 (321)
                      +|+|........+. ....++++     ...++.+++.....+ .+.+...|++|++||..
T Consensus       149 iAtG~~p~~~~~~~~~~~~~l~l-----~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~  204 (233)
T d1xdia1         149 VATGASPRILPSGSVPNTSGLGL-----ERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCT  204 (233)
T ss_dssp             ECCCEEECCCGGCEEECCSSSCT-----TTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGG
T ss_pred             eecCccccccccccccccccccc-----chhhhcccCCCcCCcCCCcccCCCCEEEEEEeC
Confidence            99995443221110 00111111     112223333221222 34566789999999986

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=9.4e-13  Score=111.26  Aligned_cols=53  Identities=26%  Similarity=0.384  Sum_probs=46.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~  143 (321)
                      +|||+||||||+|++||++|++. |++|+|||+.+..||.|...++.+...+..
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~-G~kV~lie~~~~~GG~~~~~g~~p~~~~~~   57 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKLGGTCLNVGCIPSKALLN   57 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCcceEeEEeeccccccccc
Confidence            79999999999999999999999 999999999988999888777776655443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.29  E-value=3.3e-12  Score=108.73  Aligned_cols=188  Identities=14%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCC--------CCCccccCcccchhhhccchH----HHHHHHcCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS--------PGGGAWLGGQLFSAMVVRKPA----HIFLDELGI  155 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~--------~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~  155 (321)
                      ++|||||||+||||++||+++++. |. +|+|+|+...        .||+|.+.+|++.+.+.....    .+.+..+|+
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~-g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi   80 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW   80 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEEeccCCcccccccccccccccchhhhhccccccccccccccccccc
Confidence            379999999999999999999998 64 6999998653        578888888888777655422    233344555


Q ss_pred             CcccCC---CeEEEe-cHHH----HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCce
Q 020815          156 DYDEQD---NYVVIK-HAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN  227 (321)
Q Consensus       156 ~~~~~~---~~~~~~-~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~  227 (321)
                      ......   ++.... +...    +...+...+.+..+++++.+....   ..+.... ...        ......+...
T Consensus        81 ~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~---~~~~~~~-~~~--------~~~~~~~~~e  148 (240)
T d1feca1          81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGAL---QDNHTVL-VRE--------SADPNSAVLE  148 (240)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEE---EETTEEE-EES--------SSSTTSCEEE
T ss_pred             cccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccc---ccccccc-ccc--------cccccccceE
Confidence            433221   111000 1111    112222233445678887763222   2222111 110        0000122346


Q ss_pred             EEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccc-hhhcccccccccccccccch
Q 020815          228 VMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAED-AIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       228 ~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pg~~~~g~~~  294 (321)
                      ++.++.|++++|.........+.....+++     ...++.++.... .+..+.+...|++|++||..
T Consensus       149 ~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l-----~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~  211 (240)
T d1feca1         149 TLDTEYILLATGSWPQHLGIEVPRSQTLQL-----EKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVT  211 (240)
T ss_dssp             EEEEEEEEECCCEEECCCCSBEESCTTSCG-----GGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGG
T ss_pred             EEecceEEEecCCceeEccccccccCCCCc-----cccCeEECCCCcEEcCcccCcCCCCEEEEEECC
Confidence            899999999999543211000000011111     011222332221 22245567899999999975

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.28  E-value=1.8e-11  Score=109.45  Aligned_cols=141  Identities=18%  Similarity=0.087  Sum_probs=83.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccC---cccch------------------------hhh--
Q 020815           92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLG---GQLFS------------------------AMV--  141 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~~~gg~~~~~---g~~~~------------------------~~~--  141 (321)
                      .|+|||||++||++|..|.+.+ +.+|+|+||+..+||.....   +....                        ...  
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y~~   85 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRD   85 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCTT
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccchh
Confidence            6999999999999999998761 36999999999998764211   00000                        000  


Q ss_pred             ccchHHHHHHHc-CCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815          142 VRKPAHIFLDEL-GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (321)
Q Consensus       142 ~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~  220 (321)
                      ........+.++ ..++...  .....+..++.+.|...+. ..+..|+++++|+++..++++.. |.+.+      .++
T Consensus        86 l~~~~~~~~~~~~~~~~~~~--~~~f~~~~~~~~yl~~~~~-~~~~~I~~~t~V~~v~~~~~~w~-Vt~~~------~~~  155 (335)
T d2gv8a1          86 LQTNTPIELMGYCDQSFKPQ--TLQFPHRHTIQEYQRIYAQ-PLLPFIKLATDVLDIEKKDGSWV-VTYKG------TKA  155 (335)
T ss_dssp             CBCSSCHHHHSCTTCCCCTT--CCSSCBHHHHHHHHHHHHG-GGGGGEECSEEEEEEEEETTEEE-EEEEE------SST
T ss_pred             hhcCCcHhhhhhhhhcCCcc--cccCCchHHHHHHHHHHHH-HhhhcccCceEEEEEEecCCEEE-EEEEe------cCC
Confidence            000000111111 1111111  1112344566666555553 56788999999999999988754 33322      111


Q ss_pred             CCCCCceEEEcCeEEEcCCCCCCC
Q 020815          221 QSCMDPNVMEAKVVVSSCGHDGPF  244 (321)
Q Consensus       221 ~~~g~~~~i~a~~VI~AtG~~~~~  244 (321)
                        ..+..+..+|+||+|+|.++.+
T Consensus       156 --~~~~~~~~~d~VI~AtG~~s~p  177 (335)
T d2gv8a1         156 --GSPISKDIFDAVSICNGHYEVP  177 (335)
T ss_dssp             --TCCEEEEEESEEEECCCSSSSB
T ss_pred             --CCeEEEEEeeEEEEcccccccc
Confidence              1123467799999999988743

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.28  E-value=8e-12  Score=105.62  Aligned_cols=54  Identities=30%  Similarity=0.500  Sum_probs=48.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~  144 (321)
                      +|||+||||||+|++||++|++. |++|+|||+...+||.|...++.+.+.+...
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~-G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~   59 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLGGVCLNVGCIPSKALLHN   59 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCSSHHHHHHSHHHHHHHHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCCCCCeeeccccchhhhhhhh
Confidence            79999999999999999999999 9999999999889999888887776655443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.25  E-value=1.5e-12  Score=113.30  Aligned_cols=38  Identities=34%  Similarity=0.663  Sum_probs=36.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|+|||||++||+||++|++. |++|+|||+++.+||.+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~GG~~   40 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGKL   40 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCCCCcCce
Confidence            599999999999999999999 99999999999999865

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.25  E-value=1.1e-11  Score=106.26  Aligned_cols=127  Identities=20%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccC----CCeEE-
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ----DNYVV-  165 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~----~~~~~-  165 (321)
                      -+|+|||||++|+++|+.|+++ |++|+||||++.++... ..+     ........+.++++|+..+..    ..+.. 
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~-~~g-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~   77 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQPLSGF-GTG-----IVVQPELVHYLLEQGVELDSISVPSSSMEYV   77 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCCCC-SCE-----EECCHHHHHHHHHTTCCGGGTCBCCCEEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCC-ceE-----EEECccHHHHHHHcCcchhhhccCCCcceeE
Confidence            4799999999999999999999 99999999986554321 111     122344556777887754321    00100 


Q ss_pred             ----------------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE
Q 020815          166 ----------------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (321)
Q Consensus       166 ----------------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (321)
                                      ......+...+..   ...++.++++++++++..+++.+. +.+.              ++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~v~-v~~~--------------dG~~~  139 (265)
T d2voua1          78 DALTGERVGSVPADWRFTSYDSIYGGLYE---LFGPERYHTSKCLVGLSQDSETVQ-MRFS--------------DGTKA  139 (265)
T ss_dssp             ETTTCCEEEEEECCCCEEEHHHHHHHHHH---HHCSTTEETTCCEEEEEECSSCEE-EEET--------------TSCEE
T ss_pred             eccCCceecccccccccchhHHHHHHHHH---hcccceeecCcEEEEEEeeCCceE-EEEC--------------CCCEE
Confidence                            0111222222222   245788999999999987766443 3332              23689


Q ss_pred             EcCeEEEcCCCCC
Q 020815          230 EAKVVVSSCGHDG  242 (321)
Q Consensus       230 ~a~~VI~AtG~~~  242 (321)
                      +++++|.|+|..+
T Consensus       140 ~~d~~v~adG~~s  152 (265)
T d2voua1         140 EANWVIGADGGAS  152 (265)
T ss_dssp             EESEEEECCCTTC
T ss_pred             EEEEEeccccccc
Confidence            9999999999554

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=9.6e-12  Score=101.01  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ..+|+||||||+||+||+.|+++ |++|+|+|+.+.+||......                   .++..        ...
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~GG~l~~~~-------------------~~p~~--------~~~   94 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIGGQFNIAK-------------------QIPGK--------EEF   94 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSCTTHHHHT-------------------TSTTC--------TTH
T ss_pred             CcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCccCceEEEEE-------------------eCccc--------chH
Confidence            46899999999999999999999 999999999998887432110                   01111        112


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceE
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAA  194 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v  194 (321)
                      .++.+++.+.+. +.|+++++++.|
T Consensus        95 ~~~~~~~~~~~~-~~gV~i~l~~~V  118 (179)
T d1ps9a3          95 YETLRYYRRMIE-VTGVTLKLNHTV  118 (179)
T ss_dssp             HHHHHHHHHHHH-HHTCEEEESCCC
T ss_pred             HHHHHHHHHhhh-cCCeEEEeCCEE
Confidence            455566666665 579999998766

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=8.9e-11  Score=88.51  Aligned_cols=94  Identities=14%  Similarity=0.183  Sum_probs=71.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      .++|||||+.|+.+|..|++. |.+|+|+|+.+.+...                           +           ...
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~~l~~---------------------------~-----------d~~   63 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAPLPS---------------------------F-----------DPM   63 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT---------------------------S-----------CHH
T ss_pred             EEEEECCChhhHHHHHHhhcc-ccEEEEEeecchhhhh---------------------------c-----------chh
Confidence            699999999999999999999 9999999998643210                           0           023


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      +.+.+.+.+. +.|++++.++.++++..+++....+...              ++.++.+|.||+|+|
T Consensus        64 ~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~~~~~v~~~--------------~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          64 ISETLVEVMN-AEGPQLHTNAIPKAVVKNTDGSLTLELE--------------DGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHH-HHSCEEECSCCEEEEEECTTSCEEEEET--------------TSCEEEESEEEECSC
T ss_pred             hHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCcEEEEEEC--------------CCCEEEcCEEEEecC
Confidence            4455566665 5799999999999998765432334443              236899999999998

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.18  E-value=3.3e-11  Score=101.75  Aligned_cols=187  Identities=14%  Similarity=0.177  Sum_probs=98.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC--------CCCCccccCcccchhhhccch-HH---HHHHHcCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKP-AH---IFLDELGID  156 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~--------~~gg~~~~~g~~~~~~~~~~~-~~---~~l~~~g~~  156 (321)
                      .|||+||||||||++||++|++. | .+|+|+|+..        .+||.|.+.++++.+.+.... ..   +....+|..
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~-g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~   81 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATL-YKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWE   81 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHT-SCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             ccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCc
Confidence            69999999999999999999997 5 4689999853        467888778888777665432 12   222334443


Q ss_pred             cccCCC---eEEEec-HH----HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceE
Q 020815          157 YDEQDN---YVVIKH-AA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (321)
Q Consensus       157 ~~~~~~---~~~~~~-~~----~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (321)
                      +.....   +..... ..    .+.......+....+++++.+.-.   ......+.   ..      +...........
T Consensus        82 ~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~---~~~~~~~~---~~------~~~~~~~~~~~~  149 (238)
T d1aoga1          82 FDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGS---LESKNVVN---VR------ESADPASAVKER  149 (238)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEE---EEETTEEE---EE------SSSSTTSCEEEE
T ss_pred             ccCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEee---cccccccc---cc------cccccccccccc
Confidence            332211   100000 00    111222233334678888876321   11122111   10      011111123467


Q ss_pred             EEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccch
Q 020815          229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (321)
Q Consensus       229 i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~  294 (321)
                      ++++.|++++|...............+.+     ...++..+...-.+..+.+...|++|++||..
T Consensus       150 ~~a~~v~i~~~~~~~~~~~~~~~~~~l~~-----~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~  210 (238)
T d1aoga1         150 LETEHILLASGSWPHMPNGRSPRTKDLQL-----QNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVT  210 (238)
T ss_dssp             EEBSCEEECCCEEECCCCCEEECCGGGCG-----GGTTCCEETTEECCCTTCBCSSTTEEECGGGG
T ss_pred             ccccceeeecccccccccccccceeeecc-----cccEEEEcCCeEEecCCeeeccCCEEEEEEec
Confidence            89999999998432211000000001100     01122233333334456778899999999875

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.18  E-value=3.2e-11  Score=109.95  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=42.8

Q ss_pred             HHHHcCCCcEEEcCceEEEEEEECC----EEEEEEEeecceecccCCCCCCCceEEEcCe-EEEcCCCCCC
Q 020815          178 SKLLARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKV-VVSSCGHDGP  243 (321)
Q Consensus       178 ~~~~~~~gv~i~~~~~v~~l~~~~~----~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~-VI~AtG~~~~  243 (321)
                      ....+..|++++.++.|++|+.+++    +++||....          .++...+++|+. ||+|.|+..+
T Consensus       232 ~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~----------~~g~~~~v~A~keVILsAGAi~S  292 (385)
T d1cf3a1         232 LPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT----------HKGNTHNVYAKHEVLLAAGSAVS  292 (385)
T ss_dssp             GGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE----------ETTEEEEEEEEEEEEECSCTTTH
T ss_pred             CchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEc----------CCCCEEEEEeCCEEEEcCchhhC
Confidence            3344578999999999999998865    899998643          123457789976 9999997764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.1e-11  Score=97.62  Aligned_cols=111  Identities=12%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      ++||+|||||++|+.||+.|++. |++|+|||+.. .+|.+.....+..                     ...+......
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~-g~~v~iie~~~-~~g~~~~~~~i~~---------------------~~~~~~~~~~   61 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARA-NLQPVLITGME-KGGQLTTTTEVEN---------------------WPGDPNDLTG   61 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCSS-TTGGGGGCSBCCC---------------------STTCCSSCBH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCceEEEEeec-ccccccccchhhh---------------------hhccccccch
Confidence            68999999999999999999999 99999999874 3433221111100                     0001111234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                      .++...+..++. +.++++..+ .|+.+..+++.. .+..               ....+.++.+|+++|..
T Consensus        62 ~~~~~~~~~~~~-~~~~~~~~~-~V~~~~~~~~~~-~v~~---------------~~~~~~~~~viva~G~~  115 (190)
T d1trba1          62 PLLMERMHEHAT-KFETEIIFD-HINKVDLQNRPF-RLNG---------------DNGEYTCDALIIATGAS  115 (190)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECC-CEEEEECSSSSE-EEEE---------------SSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHH-hcCcEEecc-eeEEEecCCCcE-EEEE---------------eeeeEeeeeeeeeccee
Confidence            566666666665 568888876 677776555422 2222               23678999999999953

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=8.3e-11  Score=95.48  Aligned_cols=110  Identities=18%  Similarity=0.277  Sum_probs=70.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      |||+|||||++|+.||++|++. |++|+|||++  +||.+........                  +   .... .....
T Consensus         2 yDViIIGgGpaGl~AAi~aar~-G~~v~iie~~--~gg~~~~~~~~~~------------------~---~~~~-~~~~~   56 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER--FGGQILDTVDIEN------------------Y---ISVP-KTEGQ   56 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS--TTGGGGGCCEECC------------------B---TTBS-SEEHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CCeEEEEEEe--cCCccccccccee------------------c---cccc-hhhhH
Confidence            8999999999999999999999 9999999985  4544321110000                  0   0000 12335


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECC--EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~  240 (321)
                      .+...+..++. +.++++.....+..+...+.  ........              +..++.++.+++++|.
T Consensus        57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~  113 (184)
T d1fl2a1          57 KLAGALKVHVD-EYDVDVIDSQSASKLIPAAVEGGLHQIETA--------------SGAVLKARSIIVATGA  113 (184)
T ss_dssp             HHHHHHHHHHH-TSCEEEECSCCEEEEECCSSTTCCEEEEET--------------TSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHhh-heeceeeccceeeeecccccccceeeeeee--------------cceeeecccccccccc
Confidence            55566666664 67888888877777654321  11111111              2367899999999994

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.16  E-value=2.1e-11  Score=100.34  Aligned_cols=158  Identities=17%  Similarity=0.213  Sum_probs=90.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .+||+|||||++|++||+.|++. |++|+|+|+.......  .++.+.....               ......+......
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~-g~~v~vie~~~~~~~~--~~~~~~~~~~---------------~~~~~~~~~~~~~   66 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMANDIA--PGGQLTTTTD---------------VENFPGFPEGILG   66 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSBTTBC--TTCGGGGCSE---------------ECCSTTCTTCEEH
T ss_pred             cceEEEECCCHHHHHHHHHHHHc-CCcEEEEEeecccccc--cccccccchh---------------hhccccccccccc
Confidence            68999999999999999999999 9999999986532211  0111110000               0000111111245


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~  249 (321)
                      .++...+.+++. +.|+++... .|..+...++ ...+.+               ....+.++.+++++|..........
T Consensus        67 ~el~~~~~~q~~-~~g~~i~~~-~V~~~~~~~~-~~~v~~---------------~~~~~~~~~~~~a~g~~~~g~~p~~  128 (192)
T d1vdca1          67 VELTDKFRKQSE-RFGTTIFTE-TVTKVDFSSK-PFKLFT---------------DSKAILADAVILAIGAVAKGHEPAT  128 (192)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECC-CCCEEECSSS-SEEEEC---------------SSEEEEEEEEEECCCEEECCEEESC
T ss_pred             hHHHHHHHHHHH-hhcceeeee-eEEecccccC-cEEecc---------------cceeeeeeeEEEEeeeeecccCchH
Confidence            677777777776 578999877 5777764443 222222               2367899999999994321110000


Q ss_pred             hhhhhcCCcccccCCceeecccccchhhc--ccccccccccccccch
Q 020815          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVR--LTREVVPGMIVTGMEV  294 (321)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~~g~~~  294 (321)
                      .         .+..  ++.++.....+..  ..+...||+|++|+..
T Consensus       129 ~---------~~~~--~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~  164 (192)
T d1vdca1         129 K---------FLDG--GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQ  164 (192)
T ss_dssp             G---------GGTT--SSCBCTTSCBCCCTTSCBCSSTTEEECGGGG
T ss_pred             H---------HhcC--ceeecCCCeEEeCCCceEecCCCEEEeeecC
Confidence            0         1111  1222222222222  3455789999999875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.15  E-value=1.9e-10  Score=88.79  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||+.|+.+|..|++. |.+|+|+|+.+.+....                                     ...
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~-g~~Vtvie~~~~~l~~~-------------------------------------~~~   77 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARVLERV-------------------------------------TAP   77 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTT-------------------------------------SCH
T ss_pred             CEEEEECCchHHHHHHHHHHhh-Ccceeeeeecccccccc-------------------------------------cch
Confidence            4899999999999999999999 99999999986532110                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      .+.+.+.+.+. +.|+++++++.++.+...  ++++..+.+.+              +.++.||.||+|+|
T Consensus        78 ~~~~~~~~~~~-~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~--------------G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          78 PVSAFYEHLHR-EAGVDIRTGTQVCGFEMSTDQQKVTAVLCED--------------GTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEECTTTCCEEEEEETT--------------SCEEECSEEEECCC
T ss_pred             hhhhhhhhccc-ccccEEEeCCeEEEEEEeCCCceEEEEECCC--------------CCEEECCEEEEeeC
Confidence            23334444443 679999999999999874  45677777643              36899999999998

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.14  E-value=6e-11  Score=107.12  Aligned_cols=62  Identities=27%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC-eEEEcCCCCC
Q 020815          174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDG  242 (321)
Q Consensus       174 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~-~VI~AtG~~~  242 (321)
                      ..++..+.++.|++|+.++.|++|+.++++++||.....      .. ..+...++.|+ .||+|.|+.+
T Consensus       194 ~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~------~~-~~~~~~~v~a~~eVILsAGai~  256 (360)
T d1kdga1         194 ATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDP------TL-GPNGFIPVTPKGRVILSAGAFG  256 (360)
T ss_dssp             HTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCT------TS-SGGGEEEEEEEEEEEECSHHHH
T ss_pred             chhhhhhhcccccccccCcEEEEEEEeCCEEEEEEEEec------cc-CcceEEEEEECCEEEEechhHh
Confidence            344555556788999999999999999999999998531      00 00122355554 5999999544

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.14  E-value=7.2e-11  Score=106.61  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .++||||||+|++|+.+|++|++. |++|+|||++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaea-G~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            469999999999999999999999 9999999986

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.11  E-value=5.8e-10  Score=84.29  Aligned_cols=97  Identities=14%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+..|..|++. |.+|+|+|+.+.+-..                                      ...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~~~~ll~~--------------------------------------~d~   63 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKFLPA--------------------------------------VDE   63 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCChHHHHHHHHHHHc-CCceEEEEeecccCCc--------------------------------------ccc
Confidence            4799999999999999999999 9999999998643110                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ++...+.+.+. +.|++++.+++++++..+++.+. +....      .     +...++.+|.||+|+|
T Consensus        64 ei~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~------~-----~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          64 QVAKEAQKILT-KQGLKILLGARVTGTEVKNKQVT-VKFVD------A-----EGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHH-HTTEEEEETCEEEEEEECSSCEE-EEEES------S-----SEEEEEEESEEEECSC
T ss_pred             hhHHHHHHHHH-hcCceeecCcEEEEEEEeCCEEE-EEEEE------C-----CCCEEEECCEEEEeeC
Confidence            45555566665 67999999999999988776543 22211      1     1236899999999998

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.08  E-value=2.6e-10  Score=102.45  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      .+|||||||+|++|+.+|.+|++. |+||+|||++..
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~-G~kVlvLEaG~~   38 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEI   38 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhC-CCeEEEEecCCC
Confidence            379999999999999999999998 999999999743

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.08  E-value=1.1e-09  Score=82.43  Aligned_cols=95  Identities=16%  Similarity=0.248  Sum_probs=71.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||||+.|+.+|..|++. |.+|+|+|+.+.+...                           +          + .
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~il~~---------------------------~----------d-~   63 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAGEILSG---------------------------F----------E-K   63 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT---------------------------S----------C-H
T ss_pred             CeEEEECCCccceeeeeeeccc-ccEEEEEEecceeccc---------------------------c----------c-c
Confidence            3799999999999999999999 9999999998753210                           0          0 2


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      ++.+.+.+.+. +.|++++.++.++++..+++.+......            +++..++.+|.||+.
T Consensus        64 ~~~~~l~~~l~-~~GI~i~~~~~v~~i~~~~~~~~v~~~~------------~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLK-KKGVEVVTNALAKGAEEREDGVTVTYEA------------NGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESEEEEEEEEETTEEEEEEEE------------TTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCEEEEEEEe------------CCCEEEEEeEEEEEC
Confidence            34555566665 5799999999999999887765432221            124478999999873

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.06  E-value=4.8e-11  Score=108.98  Aligned_cols=35  Identities=34%  Similarity=0.693  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +||+||||+|.+|+.+|.+|++.++.+|+|||++.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            69999999999999999999998348999999985

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.06  E-value=4.5e-10  Score=84.36  Aligned_cols=94  Identities=21%  Similarity=0.251  Sum_probs=68.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||+.|+.+|..|++. |.+|+|+|+.+.+...                           +           ..
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~-g~~Vtlve~~~~il~~---------------------------~-----------d~   62 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERILPT---------------------------Y-----------DS   62 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT---------------------------S-----------CH
T ss_pred             CeEEEECCCHHHHHHHHHHhhc-ccceEEEeeecccccc---------------------------c-----------cc
Confidence            3799999999999999999999 9999999998643110                           0           12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ++.+.+.+.+. +.|++++.+++|+++  +++..... .            .+++..++.||.||+|+|
T Consensus        63 ~~~~~l~~~l~-~~gV~i~~~~~V~~i--~~~~~~~~-~------------~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          63 ELTAPVAESLK-KLGIALHLGHSVEGY--ENGCLLAN-D------------GKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHH-HHTCEEETTCEEEEE--ETTEEEEE-C------------SSSCCCEECCSCEEECCC
T ss_pred             hhHHHHHHHHH-hhcceEEcCcEEEEE--cCCeEEEE-E------------cCCCeEEEEcCEEEEecC
Confidence            34455555554 679999999999887  34432211 1            112346899999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.05  E-value=1.6e-09  Score=82.04  Aligned_cols=91  Identities=20%  Similarity=0.257  Sum_probs=67.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      ..++|||||+.|+.+|..|++. |.+|+|+|+.+.+-...                                     ...
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~~l~~~-------------------------------------~~~   72 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRLMSRA-------------------------------------APA   72 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECcchhHHHHHHHhhcc-cceEEEEeecccccccc-------------------------------------CCH
Confidence            5899999999999999999999 99999999986432110                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      .+.+.+.+.+. +.||+++.++.++++  .++.   +.+.              ++.++.||.||+|+|
T Consensus        73 ~~~~~~~~~l~-~~GV~i~~~~~v~~~--~~~~---v~l~--------------dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          73 TLADFVARYHA-AQGVDLRFERSVTGS--VDGV---VLLD--------------DGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHH-TTTCEEEESCCEEEE--ETTE---EEET--------------TSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCEEEEE--eCCE---EEEC--------------CCCEEECCEEEEeeC
Confidence            34445455554 789999999999876  3443   3332              237899999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2e-09  Score=83.37  Aligned_cols=95  Identities=18%  Similarity=0.288  Sum_probs=71.7

Q ss_pred             ccEEEECCChHHHHHHHHhhc----CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEE
Q 020815           91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  166 (321)
                      -.++|||||+.|+.+|..|++    . |.+|++||+.+.+....                          +         
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~-g~~Vt~i~~~~~~l~~~--------------------------~---------   81 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARAL-GTEVIQLFPEKGNMGKI--------------------------L---------   81 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHH-TCEEEEECSSSSTTTTT--------------------------S---------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhc-CCEEEEecccccCCccc--------------------------C---------
Confidence            479999999999999999864    4 89999999976432110                          0         


Q ss_pred             ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                        ..++.+.+.+.+. +.|++++.++.+.++..+++++. +.+.              ++.++.||.||+|+|
T Consensus        82 --~~~~~~~~~~~l~-~~GV~~~~~~~V~~i~~~~~~~~-v~l~--------------~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          82 --PEYLSNWTMEKVR-REGVKVMPNAIVQSVGVSSGKLL-IKLK--------------DGRKVETDHIVAAVG  136 (137)
T ss_dssp             --CHHHHHHHHHHHH-TTTCEEECSCCEEEEEEETTEEE-EEET--------------TSCEEEESEEEECCC
T ss_pred             --CHHHHHHHHHHHH-hCCcEEEeCCEEEEEEecCCEEE-EEEC--------------CCCEEECCEEEEeec
Confidence              1234455555665 78999999999999988877654 4443              237899999999999

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.03  E-value=3.1e-10  Score=96.44  Aligned_cols=39  Identities=28%  Similarity=0.482  Sum_probs=34.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~  129 (321)
                      +.+|||||||++|+++|++|+++ |.+|+||||....++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~-G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDVS   44 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCTTCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHC-CCCEEEEeCCCCCCCc
Confidence            46899999999999999999999 9999999998654443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.03  E-value=3e-09  Score=80.38  Aligned_cols=98  Identities=13%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+..|..|++. |.+|.++|+.+.+...                                      ...
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~-g~~vt~i~~~~~~l~~--------------------------------------~d~   63 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPLKLI--------------------------------------KDN   63 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTTTC--------------------------------------CSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-chhheEeeccchhhcc--------------------------------------ccc
Confidence            4899999999999999999999 9999999998643110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      .+.+.+.+.+. +.|++++.+++++++..++ +.+..+....           .++..++.||+||+|+|
T Consensus        64 ~~~~~~~~~l~-~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~-----------~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          64 ETRAYVLDRMK-EQGMEIISGSNVTRIEEDANGRVQAVVAMT-----------PNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHH-HTTCEEESSCEEEEEEECTTSBEEEEEEEE-----------TTEEEEEECSCEEECCC
T ss_pred             chhhhhhhhhh-ccccEEEcCCEEEEEEecCCceEEEEEEEe-----------CCCCEEEEcCEEEEEEC
Confidence            33344445444 6799999999999998764 4554444321           11347899999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.02  E-value=1.7e-09  Score=82.31  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=74.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||..|+..|..+++. |.+|+|+|+.+.+-..                                      ...
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~-G~~Vtive~~~~il~~--------------------------------------~d~   67 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGLMQG--------------------------------------ADR   67 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHhhcC-CCEEEEEEeecccccc--------------------------------------chh
Confidence            3799999999999999999999 9999999998643210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ++.+.+.+.+. +.|++++.++++.++..+++.+. +.+..          .++..+++++|.|++|+|
T Consensus        68 ~~~~~l~~~l~-~~gv~~~~~~~v~~v~~~~~g~~-v~~~~----------~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          68 DLVKVWQKQNE-YRFDNIMVNTKTVAVEPKEDGVY-VTFEG----------ANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHG-GGEEEEECSCEEEEEEEETTEEE-EEEES----------SSCCSSCEEESCEEECCC
T ss_pred             hHHHHHHHHHH-HcCcccccCcEEEEEEEcCCcEE-EEEEe----------CCCCeEEEEcCEEEEecC
Confidence            44555566665 68999999999999998887553 33321          122346899999999999

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.01  E-value=1.7e-09  Score=81.41  Aligned_cols=95  Identities=13%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             ccEEEECCChHHHHHHHHhh---cCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           91 TDVVVVGAGSAGLSCAYELS---KNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La---~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      -.++|||||+.|+.+|..|+   +. |.+|.|+|+.+.+...                           +          
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~-g~~Vtli~~~~~il~~---------------------------~----------   60 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKAR-GGQVDLAYRGDMILRG---------------------------F----------   60 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCT-TCEEEEEESSSSSSTT---------------------------S----------
T ss_pred             CeEEEECCChHHHHHHHHhHhhccc-ccccceeccccccccc---------------------------c----------
Confidence            37999999999999997654   45 8899999997643110                           0          


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                       ..++.+.+.+.+. +.|++++.++.++++..+++.+..+...+              +.++.+|.||+|+|
T Consensus        61 -d~~~~~~~~~~l~-~~GI~v~~~~~v~~i~~~~~g~~~v~~~~--------------g~~i~~D~Vi~a~G  116 (117)
T d1feca2          61 -DSELRKQLTEQLR-ANGINVRTHENPAKVTKNADGTRHVVFES--------------GAEADYDVVMLAIG  116 (117)
T ss_dssp             -CHHHHHHHHHHHH-HTTEEEEETCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSC
T ss_pred             -cchhhHHHHHHHh-hCcEEEEcCCEEEEEEECCCCEEEEEECC--------------CCEEEcCEEEEecC
Confidence             1334455555555 67999999999999987765555566542              36899999999999

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.00  E-value=2.2e-09  Score=81.54  Aligned_cols=92  Identities=28%  Similarity=0.404  Sum_probs=68.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+-...                          +           ..
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~-g~~Vtlie~~~~~l~~~--------------------------~-----------d~   72 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRPLGVY--------------------------L-----------DK   72 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT--------------------------C-----------CH
T ss_pred             CEEEEECChHHHHHHHHHhhcc-ceEEEEEEecCcccccc--------------------------c-----------ch
Confidence            4899999999999999999999 99999999986431110                          0           12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      ++.+.+.+.+. +.|++++.++.++++.. ++++..+..               ++.++.||.||+|
T Consensus        73 ~~~~~~~~~l~-~~gv~~~~~~~v~~i~~-~~~~~~v~~---------------dg~~i~~D~vi~a  122 (123)
T d1nhpa2          73 EFTDVLTEEME-ANNITIATGETVERYEG-DGRVQKVVT---------------DKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHH-TTTEEEEESCCEEEEEC-SSBCCEEEE---------------SSCEEECSEEEEC
T ss_pred             hhHHHHHHHhh-cCCeEEEeCceEEEEEc-CCCEEEEEe---------------CCCEEECCEEEEE
Confidence            34445445554 77999999999999864 455555543               2368999999987

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.99  E-value=6.3e-10  Score=100.10  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      +||||||+|++|+.+|++|++. |++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC-cCeEEEEecCC
Confidence            6999999999999999999999 99999999963

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7e-09  Score=78.86  Aligned_cols=102  Identities=11%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      .++|||||..|+.+|..|++. |.+|+|+|+++.+-..                           +           ..+
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~~l~~---------------------------~-----------d~~   64 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKVLRS---------------------------F-----------DSM   64 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT---------------------------S-----------CHH
T ss_pred             EEEEEcCCccHHHHHHHHhcC-CcEEEEEeeccccccc---------------------------h-----------hhH
Confidence            799999999999999999999 9999999998643110                           0           133


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      +.+.+.+.+. +.|++++.+++++++..+++.+.......      ..+........+.+|.||+|+|
T Consensus        65 ~~~~~~~~l~-~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~------~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          65 ISTNCTEELE-NAGVEVLKFSQVKEVKKTLSGLEVSMVTA------VPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHH-HTTCEEETTEEEEEEEEETTEEEEEEEEC------CTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeEEEEEEEc------cCCcCcCccccccCCEEEEEeC
Confidence            4455555554 68999999999999988776433211110      0000001124678999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=5.5e-09  Score=79.12  Aligned_cols=98  Identities=13%  Similarity=0.176  Sum_probs=71.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.++|||||+.|+.+|..|++. |.+|+|+|+.+.+-..                           +           ..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~~~l~~---------------------------~-----------d~   64 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQIGAS---------------------------M-----------DG   64 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSSS---------------------------S-----------CH
T ss_pred             CeEEEECCCchHHHHHHHHHhh-CcceeEEEeccccchh---------------------------h-----------hh
Confidence            3799999999999999999999 9999999998643110                           0           13


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-EEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      ++.+.+.+.+. +.|++++++++++++..+++. ...+...++         ..++..++.||.|++|
T Consensus        65 ei~~~l~~~l~-~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~---------~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          65 EVAKATQKFLK-KQGLDFKLSTKVISAKRNDDKNVVEIVVEDT---------KTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTTTEEEEEEEET---------TTTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHH-hccceEEeCCEEEEEEEeCCCcEEEEEEEeC---------CCCCeEEEEeCEEEEC
Confidence            45555566665 579999999999999887543 333333321         1224578999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.93  E-value=3.1e-09  Score=80.66  Aligned_cols=96  Identities=20%  Similarity=0.223  Sum_probs=71.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      .++|||||..|+..|..+++. |.+|+|+|+++.+-..                                      ...+
T Consensus        27 ~~viiG~G~iglE~A~~~~~~-G~~Vtvi~~~~~~l~~--------------------------------------~d~~   67 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASEIVPT--------------------------------------MDAE   67 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCHH
T ss_pred             eEEEEccchHHHHHHHHHHhc-CCeEEEEEEccccCch--------------------------------------hhhc
Confidence            799999999999999999999 9999999998643110                                      0134


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEE-EEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG-GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~-gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At  238 (321)
                      +...+.+.+. +.|++++.++.+.++..+++.+. .+...           .+++..++.||.|++|.
T Consensus        68 ~~~~l~~~l~-~~GI~i~~~~~v~~i~~~~~~~~v~~~~~-----------~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          68 IRKQFQRSLE-KQGMKFKLKTKVVGVDTSGDGVKLTVEPS-----------AGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHH-HSSCCEECSEEEEEEECSSSSEEEEEEES-----------SSCCCEEEEESEEECCC
T ss_pred             chhhhhhhhh-cccceEEcCCceEEEEEccCeEEEEEEEC-----------CCCeEEEEEcCEEEEcC
Confidence            4555566665 67999999999999987655433 22221           22345789999999884

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.92  E-value=4.2e-09  Score=79.79  Aligned_cols=88  Identities=23%  Similarity=0.354  Sum_probs=66.5

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -+++|||||+.|+.+|..|++. |.+|+|+|+.+.+.+                            +           ..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~l~~----------------------------~-----------d~   72 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMFLG----------------------------L-----------DE   72 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCCTT----------------------------C-----------CH
T ss_pred             CcEEEECCcHHHHHHHHHhhcc-cceEEEEeccccccC----------------------------C-----------CH
Confidence            4899999999999999999999 999999999864311                            0           02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ++.+.+.+.+. +.|++++.++.++++.  ++   ++..               +...+.+|.||+|+|
T Consensus        73 ~~~~~~~~~l~-~~GV~~~~~~~v~~~~--~~---~v~~---------------~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          73 ELSNMIKDMLE-ETGVKFFLNSELLEAN--EE---GVLT---------------NSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHH-HTTEEEECSCCEEEEC--SS---EEEE---------------TTEEEECSCEEEECC
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCEEEEEe--CC---EEEe---------------CCCEEECCEEEEEEE
Confidence            33444555555 5799999999998873  33   2333               237899999999999

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.89  E-value=8.2e-09  Score=77.50  Aligned_cols=93  Identities=8%  Similarity=0.072  Sum_probs=68.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      -.|+|||||..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~il~~--------------------------------------~d~   63 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRILRK--------------------------------------FDE   63 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CEEEEECCchHHHHHHHHHHhc-cccceeeehhcccccc--------------------------------------ccH
Confidence            3699999999999999999999 9999999998643110                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE-EcCeEEEc
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM-EAKVVVSS  237 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i-~a~~VI~A  237 (321)
                      .+.+.+.+.+. +.|+++++++.++++...++....+.+.+              +.++ .+|.||+|
T Consensus        64 ~~~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~~~~v~~~~--------------G~~~~~~D~Vi~A  116 (117)
T d1onfa2          64 SVINVLENDMK-KNNINIVTFADVVEIKKVSDKNLSIHLSD--------------GRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEESSTTCEEEEETT--------------SCEEEEESEEEEC
T ss_pred             HHHHHHHHHHH-hCCCEEEECCEEEEEEEcCCCeEEEEECC--------------CCEEEeCCEEEEe
Confidence            45566666665 57999999999999987654333444432              2455 46999987

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.6e-11  Score=98.98  Aligned_cols=130  Identities=13%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEE--E
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVV--I  166 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~  166 (321)
                      ++++||||||++|+.+|..|.+. +..+|++|++.+.+.   +.... ..+.+...........+.  +........  .
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p---y~r~~-Ls~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   77 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP---YMRPP-LSKELWFSDDPNVTKTLR--FKQWNGKERSIY   77 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC---BCSGG-GGTGGGCC--CTHHHHCE--EECTTSCEEESB
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC---ccccc-cceecccccCchhhhhhh--hhhcccchhhhh
Confidence            68999999999999999999874 246799998865331   11001 111111110000111110  000000000  0


Q ss_pred             ecHHHH-H-HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815          167 KHAALF-T-STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (321)
Q Consensus       167 ~~~~~~-~-~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~  243 (321)
                      .....+ . ......+ ++.|++++.+++|+.|..++.+   |.+.              ++.++.+|.||+|+|+..+
T Consensus        78 ~~~~~~~~~~~~~~~~-~~~gI~~~~g~~V~~id~~~~~---V~l~--------------dG~~i~~d~lViAtG~~~~  138 (213)
T d1m6ia1          78 FQPPSFYVSAQDLPHI-ENGGVAVLTGKKVVQLDVRDNM---VKLN--------------DGSQITYEKCLIATGGTEP  138 (213)
T ss_dssp             SSCGGGSBCTTTTTTS-TTCEEEEEETCCEEEEEGGGTE---EEET--------------TSCEEEEEEEEECCCEEEE
T ss_pred             cCChhhhhhhhhHHHH-HHCCeEEEeCCEEEEeeccCce---eeec--------------cceeeccceEEEeeeeecc
Confidence            000000 0 0001122 3679999999999999766653   3443              2378999999999996543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.7e-08  Score=75.17  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  171 (321)
                      .++|||||+.|+..|..|++. |.+|+||++.....+                            +           ..+
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~l-G~~Vtii~~~~~l~~----------------------------~-----------D~~   61 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSILLRG----------------------------F-----------DQD   61 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSTT----------------------------S-----------CHH
T ss_pred             eEEEECCCccHHHHHHHHhhc-CCeEEEEEechhhcc----------------------------C-----------CHH
Confidence            799999999999999999999 999999997532110                            0           134


Q ss_pred             HHHHHHHHHHcCCCcEEEcCceEEEEEEEC-C--EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG-G--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~--~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      +.+.+.+.+. +.|++|+.++.++++...+ +  ....+....      .   ..++...+.+|.|++|+|
T Consensus        62 ~~~~l~~~l~-~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~------~---~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          62 MANKIGEHME-EHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKS------T---NSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHH-HTTEEEEESCEEEEEEEEECSTTCEEEEEEEC------T---TSCEEEEEEESEEECCCC
T ss_pred             HHHHHHHHHH-HCCCEEEECCEEEEEEEecCCCccEEEEEEEE------C---CCCcEEEEECCEEEEEeC
Confidence            5556666665 6799999999999997642 1  112222221      1   111335678999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.81  E-value=2.3e-08  Score=74.94  Aligned_cols=93  Identities=12%  Similarity=0.144  Sum_probs=66.8

Q ss_pred             ccEEEECCChHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  167 (321)
                      -.++|||||+.|+.+|..+..   . +.+|+|||+.+.+-..                                      
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~-~~~Vtli~~~~~iL~~--------------------------------------   61 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPK-DGQVTLCYRGEMILRG--------------------------------------   61 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCT-TCEEEEEESSSSSSTT--------------------------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccC-CcEEEEEeccchhhcc--------------------------------------
Confidence            379999999999999976654   4 6789999997642100                                      


Q ss_pred             cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                      ....+.+.+.+.+. +.|++++.+++++++..+++....+.+.+              +.++.||.||+|
T Consensus        62 ~d~~~~~~l~~~l~-~~GV~v~~~~~v~~ie~~~~~~~~v~~~~--------------G~~i~~D~Vi~A  116 (117)
T d1aoga2          62 FDHTLREELTKQLT-ANGIQILTKENPAKVELNADGSKSVTFES--------------GKKMDFDLVMMA  116 (117)
T ss_dssp             SCHHHHHHHHHHHH-HTTCEEEESCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEEC
T ss_pred             cchHHHHHHHHHHH-hcCcEEEcCCEEEEEEEcCCCeEEEEECC--------------CcEEEeCEEEEe
Confidence            01344455556665 67999999999999987654333455532              367999999987

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.3e-09  Score=95.51  Aligned_cols=40  Identities=40%  Similarity=0.652  Sum_probs=38.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      |||||||||++||++|+.|++. |.+|+|+|+++.+||.+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~-g~~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSGGGC
T ss_pred             ccEEEECCcHHHHHHHHHHHhC-CCcEEEEECCCCcccceE
Confidence            7999999999999999999999 999999999999999874

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-09  Score=94.67  Aligned_cols=41  Identities=24%  Similarity=0.507  Sum_probs=38.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~  131 (321)
                      +.+|||||||++||+||+.|++. |++|+|+|+++.+||.++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~-G~~V~VlEa~~r~GGr~~   45 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVA   45 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCcccEE
Confidence            57899999999999999999999 999999999999998653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.77  E-value=2e-09  Score=90.84  Aligned_cols=38  Identities=42%  Similarity=0.637  Sum_probs=35.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA  130 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~  130 (321)
                      ||+|||||++||+||+.|+++ |+ +|+|+|+++.+||.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~~GG~~   40 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGGRM   40 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBTTS
T ss_pred             CEEEECCcHHHHHHHHHHHhC-CCCcEEEEECCCCCCceE
Confidence            899999999999999999999 96 699999999998865

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.76  E-value=2.5e-09  Score=95.97  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      +||+||||+|.+|+.+|.+|++.  .||+|||++..
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT--SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC--CCEEEEecCCC
Confidence            69999999999999999999974  89999999863

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.76  E-value=4e-08  Score=80.38  Aligned_cols=112  Identities=17%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      .|+|||||.+|+.+|..|.+. ++.+|+++|++..+.   +....          ...++..   .+...+.        
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~---~~~~~----------~~~~l~~---~~~~~~~--------   57 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS---FLSAG----------MQLYLEG---KVKDVNS--------   57 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS---BCGGG----------HHHHHTT---SSCCGGG--------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc---ccccC----------cchhhcc---cccchHH--------
Confidence            499999999999999999883 367899999976432   10000          0011111   0000000        


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~  241 (321)
                       +.....+.+. +.|++++.+++|+++..+++.+.....            .+++..++.+|.+|+|+|..
T Consensus        58 -~~~~~~~~l~-~~gi~v~~~~~V~~i~~~~~~v~~~~~------------~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          58 -VRYMTGEKME-SRGVNVFSNTEITAIQPKEHQVTVKDL------------VSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             -SBSCCHHHHH-HTTCEEEETEEEEEEETTTTEEEEEET------------TTCCEEEEECSEEEECCCEE
T ss_pred             -HHHhhHHHHH-HCCcEEEEeeceeeEeeccccceeeec------------ccccccccccceeeEeecce
Confidence             0001122232 469999999999999776664332111            22345788999999999954

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.68  E-value=3.2e-09  Score=89.58  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=37.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..+|+|||||++|+++|..|++. |++|+|+|+.+.+||..
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~-G~~v~l~E~~~~~GG~~   88 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIGGHL   88 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTH
T ss_pred             CceEEEEcccHHHHHHHHHHHHh-ccceeeEeeccccCCcc
Confidence            46999999999999999999999 99999999999888754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.61  E-value=1.3e-08  Score=82.23  Aligned_cols=150  Identities=18%  Similarity=0.169  Sum_probs=82.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  170 (321)
                      ..|+|||||++|+.+|..|.+. |.+|.|++..+..... +      ........   +.......              
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~~~~~-~------~~~~l~~~---~~~~~~~~--------------   58 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAERP-Y------DRPPLSKD---FMAHGDAE--------------   58 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCSCC-B------CSGGGGTT---HHHHCCGG--------------
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCceEEEEEecccccc-h------hhHHHhhh---hhhhhhhh--------------
Confidence            4699999999999999999998 8777777665432210 0      00000000   00000000              


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (321)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~  250 (321)
                          .+........+++++.+.+++++..+...   +.+.              ++.++.+|.||+|+|...........
T Consensus        59 ----~~~~~~~~~~~i~~~~~~~v~~i~~~~~~---~~~~--------------~g~~~~~D~vi~a~G~~p~~~~~~~~  117 (183)
T d1d7ya1          59 ----KIRLDCKRAPEVEWLLGVTAQSFDPQAHT---VALS--------------DGRTLPYGTLVLATGAAPRAVLANDA  117 (183)
T ss_dssp             ----GSBCCGGGSTTCEEEETCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEEECCEEECCH
T ss_pred             ----hHHHHHhhcCCeEEEEeccccccccccce---eEec--------------CCcEeeeeeEEEEEEEEccccccccc
Confidence                00011122568999999999887655443   2232              23789999999999954432211111


Q ss_pred             hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (321)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~  297 (321)
                      .....++    ....++..+       .+.+...|++|+.|+++...
T Consensus       118 ~~~~~gl----~~~~~I~vd-------~~~~ts~~~IyA~GD~a~~~  153 (183)
T d1d7ya1         118 LARAAGL----ACDDGIFVD-------AYGRTTCPDVYALGDVTRQR  153 (183)
T ss_dssp             HHHHTTC----CBSSSEECC-------TTCBCSSTTEEECGGGEEEE
T ss_pred             ccceeeE----eeCCcEEec-------cceeccccccchhhhhhccc
Confidence            1112221    011122222       23345679999999998654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.58  E-value=2.6e-08  Score=88.23  Aligned_cols=58  Identities=33%  Similarity=0.391  Sum_probs=42.5

Q ss_pred             cccEEEECCChHHHHHHHHhh-----cCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELS-----KNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI  155 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La-----~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~  155 (321)
                      .|||+|||||++|+++|..|+     +. |++|+||||.+.+.....       .........+.|+++|+
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~-G~~v~vlEr~~~~~~~~r-------~~~l~~~~~~~L~~lGl   69 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTKVYNGQ-------ADGLQCRTLESLKNLGL   69 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSSCCCSCS-------CCEECHHHHHHHHTTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccC-CCcEEEEcCCCCCCcCCe-------EEEECHHHHHHHHHcCC
Confidence            599999999999999999997     56 999999999876532210       12223445566666665

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.54  E-value=3.1e-08  Score=87.23  Aligned_cols=39  Identities=31%  Similarity=0.532  Sum_probs=37.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      ..|+|||||++||++|+.|++. |.+|+|+|+++.+||.+
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~-G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSGGG
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-CCCEEEEECCCCCcCee
Confidence            4699999999999999999999 99999999999999976

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1.1e-06  Score=66.42  Aligned_cols=96  Identities=19%  Similarity=0.252  Sum_probs=76.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-+|+|||+|-+.+-.|+.|++. ..+|.||-+++....                                         
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r~~~~~~-----------------------------------------   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEMKA-----------------------------------------   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhcc-CCceEEEeccccccc-----------------------------------------
Confidence            45999999999999999999998 899999988753211                                         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                         ...+.+++.+..++++++++++.++.-+++.+.+++..+.         .+++..++.+|.|.++-|
T Consensus        68 ---~~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~---------~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          68 ---DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR---------VSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             ---CHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEET---------TTCCEEEEECSEEEECSC
T ss_pred             ---ccccccccccccceeEEcCcceEEEEccccceeeEEEEEC---------CCCCEEEEECCEEEEEeC
Confidence               0234556666788999999999999877778888887542         234668899999999877

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.41  E-value=9.5e-08  Score=75.61  Aligned_cols=33  Identities=33%  Similarity=0.668  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      .|+|||||++|+.+|..|++  +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEeccccc
Confidence            58999999999999999975  5799999987643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=7.5e-08  Score=80.52  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=34.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCC-------CeEEEEeccCCCCCc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPN-------IQIAIIEQSVSPGGG  129 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-------~~V~liEk~~~~gg~  129 (321)
                      +.|+|||+|||||+||++|++. |       ++|+|+|+.+.+||-
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~~GG~   47 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPTPWGL   47 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSSCSTH
T ss_pred             cEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCCCCCe
Confidence            6899999999999999999987 6       689999999999884

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.34  E-value=1.8e-07  Score=75.72  Aligned_cols=38  Identities=34%  Similarity=0.550  Sum_probs=34.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGG  129 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~  129 (321)
                      -.|+|||||++||+||++|++. |++ |+|+||.+..+|.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~gg~   43 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGGL   43 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCSTH
T ss_pred             CEEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcccch
Confidence            4799999999999999999999 985 9999999877764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.33  E-value=2.7e-07  Score=77.06  Aligned_cols=30  Identities=33%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEec
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk  122 (321)
                      .|+|||||++||++|++|+++ |.+|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~-G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCceEEee
Confidence            499999999999999999998 877655554

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.7e-05  Score=59.62  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=75.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-+|+|||+|-+.+-.|..|++. ..+|.||-|++...+                                        .
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~~~----------------------------------------~   65 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA----------------------------------------E   65 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCC----------------------------------------C
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc-CCcEEEEeecccccc----------------------------------------h
Confidence            45999999999999999999998 899999998754221                                        1


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                      ......+.+... +.++.++.++.+.+|.-++..+.++...+.      .+  ..+.+++.++.|+++-|
T Consensus        66 ~~~~~~~~~~~~-~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~------~~--~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          66 KILIKRLMDKVE-NGNIILHTNRTLEEVTGDQMGVTGVRLRDT------QN--SDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHHHHH-TSSEEEECSCEEEEEEECSSSEEEEEEECC------TT--CCCCEEEECSEEEECSC
T ss_pred             hHHHHHHHHhhc-ccceeEecceEEEEEECCCCceEEEEEEEC------CC--CceEEEEECCEEEEEeC
Confidence            223344444443 789999999999999887777988887541      11  11236799999999876

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.27  E-value=9.5e-08  Score=76.73  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      -||||||||++|+.+|..|++. |.+|.|++.....
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCceEEEEecCcc
Confidence            3899999999999999999999 8998888876543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.24  E-value=1.4e-05  Score=60.32  Aligned_cols=94  Identities=15%  Similarity=0.235  Sum_probs=72.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      .-+|+|||+|-+.+-.|+.|++. -.+|.||-|++.+..                                         
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~ra-----------------------------------------   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAFRA-----------------------------------------   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCEEEEEcCchHHHHHHHHHhCC-CCcEEEEEecccccc-----------------------------------------
Confidence            46999999999999999999998 899999998864321                                         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A  237 (321)
                         ...+.+++.+.+++++++++++.++.-++  +.+.++...+.         .+++..++.++.|.+|
T Consensus        72 ---~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~---------~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          72 ---SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV---------VTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             ---CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET---------TTCCEEEEECSEEEEC
T ss_pred             ---chhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEEC---------CCCCEEEEECCEEEEE
Confidence               02345666678899999999999998765  35777776531         2335688999998876

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=7e-07  Score=74.31  Aligned_cols=38  Identities=34%  Similarity=0.561  Sum_probs=33.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG  128 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg  128 (321)
                      ..|+|||||+|||+||.+|++. .|.+|+|+|+.+.+||
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            3699999999999999999763 2779999999998887

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=1.6e-05  Score=61.76  Aligned_cols=103  Identities=18%  Similarity=0.233  Sum_probs=68.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  169 (321)
                      -.|+|||||-+|+-+|..|.+. |. +|.++.+.+...-.                                     .. 
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~-GA~~V~vi~rr~~~~~~-------------------------------------a~-   86 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRC-GARRVFLVFRKGFVNIR-------------------------------------AV-   86 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCGGGCC-------------------------------------SC-
T ss_pred             CEEEEECCChhHHHHHHHHHHc-CCcceeEEEeCChhhhc-------------------------------------cc-
Confidence            3799999999999999999998 65 58888876421000                                     00 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC---CCCCceEEEcCeEEEcCC
Q 020815          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ---SCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~---~~g~~~~i~a~~VI~AtG  239 (321)
                          ...+..+. +.+++++......++..+++++.++......  .+..+.   ..++..+|.||.||+|.|
T Consensus        87 ----~~~~~~a~-~~~~~~~~~~~~~ei~~~~~~~~~v~~~~~e--~d~~G~~~~~~g~e~~i~aD~V~~AiG  152 (153)
T d1gtea3          87 ----PEEVELAK-EEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE--QDETGKWNEDEDQIVHLKADVVISAFG  152 (153)
T ss_dssp             ----HHHHHHHH-HTTCEEECSEEEEEEEEETTEEEEEEEEEEE--ECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred             ----hhheeecc-cccceeEeccccEEEEecCCceEEEEEEEee--ECCCCCEecCCCCEEEEECCEEEECcC
Confidence                01112222 4688999998888998888888877653211  111100   112456799999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.92  E-value=7e-06  Score=64.77  Aligned_cols=34  Identities=35%  Similarity=0.636  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~  125 (321)
                      .|||||||++|+.+|..|.+. +..+|+|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            699999999999999999985 1468999999863

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.90  E-value=9.8e-06  Score=63.10  Aligned_cols=106  Identities=16%  Similarity=0.090  Sum_probs=66.1

Q ss_pred             ccEEEE--CCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815           91 TDVVVV--GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (321)
Q Consensus        91 ~DVvII--GgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  168 (321)
                      -.++|+  |||..|+.+|..|++. |.+|+|+|+.+.++..                    +.                 
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~~~~~--------------------~~-----------------   81 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHLANYM--------------------HF-----------------   81 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCTTTHH--------------------HH-----------------
T ss_pred             CceEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCccccc--------------------cc-----------------
Confidence            456665  9999999999999999 9999999997643210                    00                 


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec--c-----cCCCCCCCceEEEcCeEEEcCC
Q 020815          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM--N-----HDTQSCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~--~-----~~~~~~g~~~~i~a~~VI~AtG  239 (321)
                       ......+.+++. +.|++++.++.+.++.  ++.+.. .........  .     .......+...+.+|.+|+++|
T Consensus        82 -~~~~~~~~~~l~-~~GV~i~~~~~v~~i~--~~~v~l-~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtg  154 (156)
T d1djqa2          82 -TLEYPNMMRRLH-ELHVEELGDHFCSRIE--PGRMEI-YNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG  154 (156)
T ss_dssp             -TTCHHHHHHHHH-HTTCEEEETEEEEEEE--TTEEEE-EETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESC
T ss_pred             -hhHHHHHHHHHh-hccceEEeccEEEEec--CcceEE-EeeeccccceeeeeeEEEecccCCccCcEecceEEEEec
Confidence             011234455555 5799999999998874  333221 111100000  0     0001123446789999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.2e-05  Score=60.37  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=23.4

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeE
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQI  117 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V  117 (321)
                      -.|+|||||..|+-+|..|++. |.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~-G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQP-GEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCC-SSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHc-CCcc
Confidence            4899999999999999999998 7654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0011  Score=46.36  Aligned_cols=35  Identities=26%  Similarity=0.595  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~  126 (321)
                      -.|+|+|.|.+|+++|..|.+. |.+|.+.|.+...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcCc
Confidence            3699999999999999999999 9999999987543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.55  E-value=0.00089  Score=52.16  Aligned_cols=32  Identities=16%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|||+|..|..+|..|++. |++|+|+|+..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCh
Confidence            699999999999999999999 99999999864

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.40  E-value=0.0015  Score=59.45  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=37.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~  130 (321)
                      +|||||+|.|..=+..|.+|++. |+||+=||++...||.+
T Consensus         6 e~DVII~GTGL~ESILAaAlSr~-GkkVLHiD~N~yYGg~~   45 (491)
T d1vg0a1           6 DFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGGNW   45 (491)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             ccCEEEECCChHHHHHHHHHHhc-CCEEEEecCCCcCCCcc
Confidence            79999999999999999999999 99999999999988864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.18  E-value=0.0021  Score=50.37  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .+.|||+|..|+..|..|+++ |++|.++++.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            589999999999999999999 99999999863

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.09  E-value=0.046  Score=44.14  Aligned_cols=57  Identities=14%  Similarity=0.080  Sum_probs=36.1

Q ss_pred             CCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCC---CCCCceEEEcCeEEEcCC
Q 020815          183 RPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQ---SCMDPNVMEAKVVVSSCG  239 (321)
Q Consensus       183 ~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~---~~g~~~~i~a~~VI~AtG  239 (321)
                      ..++.+.+.....++..++  +++.++++......-+...+   ..|+..++.||.||.|.|
T Consensus       163 ~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiG  224 (225)
T d1cjca1         163 SRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIG  224 (225)
T ss_dssp             SEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCC
T ss_pred             ccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCC
Confidence            3468889998888988765  46777765432111000000   123557799999999998

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.87  E-value=0.0035  Score=46.51  Aligned_cols=32  Identities=25%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|+|+|..|...|..|.+. |.+|++||+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~-g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCcceecCCh
Confidence            489999999999999999999 99999999975

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.81  E-value=0.0044  Score=48.61  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|||+|.+|+.||..+.+. |..|.++|.+.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            5899999999999999999999 99999999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.79  E-value=0.0045  Score=47.90  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ...|+|||+|.+|+.|+..+.+. |.+|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcH
Confidence            36899999999999999999999 99999999863

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0057  Score=46.83  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      .|+|||+|..|...|..|++. |.+|.++++...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCceEEEEcCHH
Confidence            489999999999999999999 999999998754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0072  Score=47.99  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|+.+++. |++|.++|+.+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            699999999999999999999 99999999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.32  E-value=0.0065  Score=44.97  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .++|||.|..|...|..|.+. |.+|+++|+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEecCcH
Confidence            489999999999999999999 99999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.98  E-value=0.0078  Score=47.52  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|..|...|..++.. |++|.++|...
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASK-GTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.70  E-value=0.011  Score=47.08  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|+..|..|++. |.+|..+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~-g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhC-CCcEEEEeCCH
Confidence            389999999999999999999 99999999863

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.42  E-value=0.018  Score=40.81  Aligned_cols=34  Identities=18%  Similarity=0.074  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-+|+|||+|.+|+-.|..|++. ..+++++.+..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHh-cCEEEEEEecC
Confidence            45899999999999999999998 77877776653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.31  E-value=0.015  Score=45.95  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|+|||+|.-|.+.|..|++. |.+|.|+.++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~-g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-EEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCeEEEEEecH
Confidence            3699999999999999999999 99999998753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.014  Score=44.13  Aligned_cols=33  Identities=21%  Similarity=0.598  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .-.|+|||||..|+.-|..|.+. |.+|+||...
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~-GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            35799999999999999999999 9999999764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.10  E-value=0.22  Score=39.55  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=27.1

Q ss_pred             ccEEEECCChHHHHHHHHhh--------------------cCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELS--------------------KNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La--------------------~~~G~~V~liEk~~  124 (321)
                      -.|+|||+|-.++=+|..|.                    +.+-.+|.++-|..
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            48999999999999998776                    45234688888764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.06  E-value=0.027  Score=40.22  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|+|||+|..|..-|..|.+. |.+|+++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            45899999999999999999999 9999999865

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.031  Score=43.07  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..+|+|+|+|.++-++++.|.+. |.++.|+.|.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~-g~~i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSL-DCAVTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhccc-ceEEEeccch
Confidence            45899999999999999999999 8999999886

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.64  E-value=0.033  Score=42.67  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|+|+|+.|+.++..+... |.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhh-cccccccchHH
Confidence            3799999999999998877778 99999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.032  Score=42.91  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      -.|+|+|+|+.|+.++..|... |. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHc-CCceEEeccCCH
Confidence            3699999999999999888888 77 799999863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.49  E-value=0.025  Score=44.06  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      .|.|||+|.-|.+.|..|+++ |.+|.|+.+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~-g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            589999999999999999999 9999999663

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.47  E-value=0.035  Score=41.83  Aligned_cols=33  Identities=36%  Similarity=0.641  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ...|.|||+|-.|.++|+.|+.. ++  +++|+|..
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~-~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc-CCCceEEEEeec
Confidence            45799999999999999999986 54  79999975

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.96  E-value=0.044  Score=41.17  Aligned_cols=33  Identities=27%  Similarity=0.552  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCC--CeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~  123 (321)
                      +..|.|||+|..|.++|+.|+.. +  .++.|+|..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~-~~~~elvL~D~~   39 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQ-GIAEEFVIVDVV   39 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCCcEEEEeecc
Confidence            34799999999999999999997 5  479999976

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.92  E-value=0.042  Score=42.07  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|+|+|+.|+.++..+... |.+|++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM-GAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhc-cccccccccch
Confidence            4699999999999988776667 99999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.90  E-value=0.049  Score=41.48  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|.+.|..|.+. |++|.++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            489999999999999999999 99999999863

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.85  E-value=0.048  Score=41.35  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      +..|.|||+|..|.++|+.|+.. ++ +++|+|.+.
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~-~~~el~L~D~~~   41 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   41 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCceEEEEEecc
Confidence            56899999999999999998887 54 799999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.77  E-value=0.047  Score=41.57  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|+|+|+.|+.++..+... |.+|+++++.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~   60 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAM-GLHVAAIDID   60 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CEEEEeeccccHHHHHHHHHHc-CCccceecch
Confidence            3699999999999988777768 8999999886

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.67  E-value=0.058  Score=41.50  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             cEEEE-CCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVV-GAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvII-GgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|| |+|..|.+.|..|++. |.+|+|..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~-G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            37899 6799999999999999 99999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.15  Score=36.11  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      +.|.|+|||--|-..|..+.+. |++|.++|....
T Consensus        12 ~kigIlGgGQL~rMla~aA~~l-G~~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRL-GVEVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT-TCEEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHC-CCEEEEEcCCCC
Confidence            5799999999999999999999 999999998754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.08  E-value=0.082  Score=40.26  Aligned_cols=33  Identities=24%  Similarity=0.673  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ...|.|||+|-.|.++|+.|+.. ++  +++|+|..
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~-~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGK-SLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEec
Confidence            35899999999999999999998 65  79999986

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.02  E-value=0.064  Score=41.52  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      -.|+|+|+|+.|+.+...+... |. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccc-cccccccccccc
Confidence            4799999999999988888778 87 799999863

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.75  E-value=0.12  Score=39.31  Aligned_cols=33  Identities=24%  Similarity=0.665  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      ...|.|||+|-.|.++|+.|... ++  +++|+|..
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~-~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLK-GLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCC
Confidence            35799999999999999999997 54  79999976

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.68  E-value=0.089  Score=39.33  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             ccEEEEC-CChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIG-gG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|.||| .|..|.+.|..|.+. |++|.++|+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHc-CCCcEeccccc
Confidence            3799999 699999999999999 99999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.55  E-value=0.075  Score=39.60  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||+|-.|.++|+.|+..+-.+++++|...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            589999999999999999987234899998753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.43  E-value=0.097  Score=39.87  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -.|+|+|+|+.|+.++..+... |.++++++...
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcc-cccchhhccch
Confidence            4799999999999988777668 99999998763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.42  E-value=0.082  Score=40.47  Aligned_cols=33  Identities=15%  Similarity=0.379  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      +..|+|+|+|.++-++++.|.+. |. ++.|+.|.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeccc
Confidence            46899999999999999999998 85 78898876

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.25  E-value=0.12  Score=37.62  Aligned_cols=44  Identities=16%  Similarity=0.152  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLG  133 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~  133 (321)
                      ++.|+|+|||-+|...+.++.+..+++ |..+|-.+..-|....+
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~G   47 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRG   47 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECC
Confidence            578999999999999988776643777 46788776665554443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.16  E-value=0.11  Score=38.68  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      .|.|||+|-.|.++|+.|... ++  ++.|+|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALR-QTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeccC
Confidence            589999999999999999987 54  799999764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.13  E-value=0.11  Score=38.68  Aligned_cols=31  Identities=26%  Similarity=0.556  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      .|.|||+|-.|.++|+.|+.+ ++  +++|+|..
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~-~l~~ElvL~D~~   35 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIA   35 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEec
Confidence            589999999999999999987 55  78999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.11  E-value=0.083  Score=39.56  Aligned_cols=31  Identities=19%  Similarity=0.432  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      .|.|||+|-.|.++|+.|... +.  +++|+|..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCCceEEEEecc
Confidence            589999999999999999886 53  78898875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.11  Score=38.85  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .+||+|.|..|...+..|.+. |.+|++||..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~-~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR-GQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            599999999999999999999 99999999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=91.01  E-value=0.12  Score=38.38  Aligned_cols=32  Identities=22%  Similarity=0.573  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~  124 (321)
                      .|.|||+|..|.++|+.|+.. +  -++.|+|...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~-~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEK-QLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCceEEEecccc
Confidence            489999999999999999987 5  4799999764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.94  E-value=0.11  Score=40.53  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|-.|+.+|..++ . |.+|+.+|-+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~-g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-T-TSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-C-CCcEEEEECCH
Confidence            4899999999999999886 5 89999999764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.93  E-value=0.11  Score=40.03  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~  124 (321)
                      -|+|+|+|+.|+.+...+... | .+|+++|.++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHc-CCceEEEecCcH
Confidence            499999999999999999888 6 6899999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.92  E-value=0.1  Score=40.94  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=26.9

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|+|+|+.|+.++..+...+..+|+++|..
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            489999999999999888876624578888875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.90  E-value=0.12  Score=39.84  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=28.0

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      .-.|+|+|+|+.|+.++..+... |. +|+++|.+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcc-cccccccccch
Confidence            34799999999999988888777 76 78999876

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.83  E-value=0.14  Score=38.29  Aligned_cols=31  Identities=29%  Similarity=0.550  Sum_probs=27.3

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      .|.|||+ |..|.++|+.|+.. ++  ++.|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~-~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKE-PFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTC-TTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhC-Ccccccccccch
Confidence            4899996 99999999999998 63  89999876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.74  E-value=0.0062  Score=49.66  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG  127 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g  127 (321)
                      ...|+|||||..|+.+|..|++. |.+|+|+++.+...
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEA-NPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSS-CTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhc-CCceEEEEeccccc
Confidence            35799999999999999999999 99999999987653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.38  E-value=0.13  Score=39.55  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      -.|+|+|+|+.|+.++..+... |. +|++.|..+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIA-GASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHh-CCceeeeeccch
Confidence            3699999999999999988888 77 577778753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.24  E-value=0.12  Score=39.18  Aligned_cols=32  Identities=13%  Similarity=0.196  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|+|+|+.|+.++..+... |.+|.+++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~   60 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIG   60 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEeecccchhhhhHHHhcC-CCeEeccCCC
Confidence            4689999999999988777777 8999999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.17  Score=33.43  Aligned_cols=32  Identities=19%  Similarity=0.160  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|+|+|--|-..+.++.+. |++|.+++...
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~L-G~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPL-GIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGG-TEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCEEEEEcCCC
Confidence            489999999999999999999 99999999764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.06  E-value=0.16  Score=39.02  Aligned_cols=33  Identities=12%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .+|-|||-|..|...|..|.+. |++|.++++..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            4799999999999999999999 99999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.03  E-value=0.16  Score=38.79  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|+|+|+.|+.++..++...+.+|+.++..+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            488999999999999998887355788888764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.09  E-value=0.2  Score=38.21  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -|+|+|+|..|+.++..++..++.+|++++.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            489999999999999999988346888888764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.01  E-value=0.21  Score=37.18  Aligned_cols=31  Identities=23%  Similarity=0.465  Sum_probs=26.5

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      .|.|||| |..|.++|+.|+.. ++  .++|+|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhC-CccceEEEEecc
Confidence            4899996 99999999999987 54  58888875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.89  E-value=0.16  Score=38.95  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ...|+|+|+|.++-++++.|.+. +.++.|+.|.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~-~~~i~I~nR~   50 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQA-QQNIVLANRT   50 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHccc-Cceeeeccch
Confidence            45799999999999999999987 8899999886

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.78  E-value=0.28  Score=37.79  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|+|+|.++-++++.|.+. |. ++.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccch
Confidence            35899999999999999999998 55 788888864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.63  E-value=0.24  Score=37.97  Aligned_cols=32  Identities=41%  Similarity=0.726  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      ..+|+|+|+|.++-++++.|.+. + ++.|+-|.
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~-~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKD-N-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHccc-c-ceeeehhh
Confidence            56899999999999999999887 6 89999886

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.33  E-value=0.18  Score=37.37  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      .|.|||+|-.|.++|+.|+.+ +.  +++|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CcCceEEEEecc
Confidence            589999999999999999976 43  68999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.20  E-value=0.17  Score=41.09  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      ...|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus        30 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCcc
Confidence            46899999999999999999999 76 788998753

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.97  E-value=0.2  Score=37.00  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHhhcCCC--CeEEEEecc
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQS  123 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~  123 (321)
                      .|.|||+|..|.++|+.|+.. +  .++.|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCCEEEEEecc
Confidence            589999999999999998876 4  478898875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.36  E-value=0.36  Score=36.05  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      ..|.|||+|..|.++|+.|.+.+=.+++|+|...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4799999999999999988887224788888753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.21  E-value=0.18  Score=39.84  Aligned_cols=34  Identities=21%  Similarity=0.478  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-+|+|||+|.+|+-+|..|++. +.++.++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~-~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhh-hcccccccccc
Confidence            35899999999999999999998 88888776653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.20  E-value=0.29  Score=36.95  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~  124 (321)
                      .|.|||.|..|.+.|..|.+. |.  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECCh
Confidence            489999999999999999987 64  788888863

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.14  E-value=0.3  Score=37.84  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=30.0

Q ss_pred             cccEEEEC-CChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIG-gG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .-.++|.| +|..|..+|..|++. |.+|+++.++.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccch
Confidence            45788888 589999999999999 99999999873

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.95  E-value=0.26  Score=37.04  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|-|||-|..|...|..|.+. |++|.+.++.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            488999999999999999999 99999999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.90  E-value=0.27  Score=37.08  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|-|||-|..|...|..|.++ |++|.++++..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~-g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKA-GYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHC-CCeEEEEECch
Confidence            489999999999999999999 99999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.65  E-value=0.32  Score=37.13  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|-|||-|..|...|..|.+. |++|.+.++..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~-G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            589999999999999999999 99999999853

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.39  E-value=0.28  Score=37.45  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~  124 (321)
                      .|+|+|+|+.|+.+...+... |. +|+++|.+.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHc-CCceeeccCChH
Confidence            599999999999999888877 64 788888763

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.13  E-value=0.28  Score=37.29  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=26.1

Q ss_pred             ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (321)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~  123 (321)
                      -.|+|+|+|+.|+.++..+...+..+|++++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            469999999999998888776623567777775

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.02  E-value=0.24  Score=37.79  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=25.5

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeE-EEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQI-AIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V-~liEk~  123 (321)
                      .-.|+|+|+|+.|+.++..+... |.++ .+++.+
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIV   62 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESC
T ss_pred             CCEEEEeCCCHHHhhhhhccccc-ccceeeeeccH
Confidence            34799999999999999887777 6655 555654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.42  Score=36.18  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      -..|+|||-|-.|-.+|..|... |.+|++.|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~-G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGF-GARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhC-CCeeEeeeccc
Confidence            35799999999999999999999 99999999874

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.81  E-value=0.54  Score=34.66  Aligned_cols=31  Identities=29%  Similarity=0.663  Sum_probs=26.0

Q ss_pred             cEEEEC-CChHHHHHHHHhhcCCCC--eEEEEecc
Q 020815           92 DVVVVG-AGSAGLSCAYELSKNPNI--QIAIIEQS  123 (321)
Q Consensus        92 DVvIIG-gG~aGl~aA~~La~~~G~--~V~liEk~  123 (321)
                      .|.||| +|..|.++|+.|..+ ++  .++|+|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~-~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALR-DIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhC-CCCCEEEEEecC
Confidence            589999 699999999999987 54  68888853

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.54  E-value=0.5  Score=34.98  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|.|||.|..|...|..|.+. |++|.+.++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~-g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSR-GVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHC-CCeEEEEcCch
Confidence            488999999999999999999 99999988654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=82.07  E-value=0.49  Score=35.68  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      --.++|+|=|-.|-.+|.+|... |.+|.|.|..+
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~-Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGL-GARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHH-TCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhC-CCEEEEEecCc
Confidence            35899999999999999999999 99999999975

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.37  E-value=0.67  Score=34.77  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=28.9

Q ss_pred             cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (321)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~  123 (321)
                      +..|+|||+|-.|..+|..|... |. +++|+-|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCc
Confidence            56899999999999999999998 76 58888775

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.31  E-value=0.63  Score=33.56  Aligned_cols=34  Identities=15%  Similarity=0.423  Sum_probs=29.7

Q ss_pred             ccEEEECCCh-----------HHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGS-----------AGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~-----------aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      -.|+|||+|+           ++..++.+|.+. |+++++|..++.
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~-g~~~iliN~NP~   52 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREE-GYRVINVNSNPA   52 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH-TCEEEEECSCTT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHc-CCeEEEecCchH
Confidence            4799999997           478888889999 999999998864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=1  Score=32.10  Aligned_cols=34  Identities=12%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             ccEEEECCCh-----------HHHHHHHHhhcCCCCeEEEEeccCC
Q 020815           91 TDVVVVGAGS-----------AGLSCAYELSKNPNIQIAIIEQSVS  125 (321)
Q Consensus        91 ~DVvIIGgG~-----------aGl~aA~~La~~~G~~V~liEk~~~  125 (321)
                      -.|+|||+|+           ++..++.+|.+. |++++++..++.
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~-g~~~IliN~NPe   49 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALRED-GYETIMVNCNPE   49 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT-TCEEEEECCCTT
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhc-CCeEEEEecChh
Confidence            4699999996           578888899999 999999998874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=0.81  Score=35.40  Aligned_cols=32  Identities=16%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             cEEEECC-ChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (321)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~~  124 (321)
                      .|+|+|| |..|..++.+|.++ |.+|.++.|++
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~   37 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcCh
Confidence            5999995 99999999999999 99999998754