Citrus Sinensis ID: 020832

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRNPMQGIFGDIFKMM
cccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHcc
cccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHcc
msrqrpkrtalppaqeniDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQlknnqltcgAELAVSFVEALVKGKVAYDNENLDRVRKIYElfpqipvphnledddDLHELTEALGAAKLRVEGCSSFLKAAIKWSIefgapktgspeLHVMLAEYlysespeldmARVSFHfvrgnnpeKFASTIVNFmgkcypgedDLAVARAILMYLSLGNMKDANYIMDEVKKQVEnkqlqlqpsdLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFgvkrrnpmqgiFGDIFKMM
msrqrpkrtalppaqenidKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEkffgvkrrnpmqgifgdifkmm
MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNleddddlheltealGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRNPMQGIFGDIFKMM
********************LEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRNPMQGIFGDIF***
***********************IVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELT*******LRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQV******LQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFG***********GDIFKMM
************PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRNPMQGIFGDIFKMM
************PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRNPMQGIFGDIFKMM
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MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRNPMQGIFGDIFKMM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q54TH4309 Golgi to ER traffic prote yes no 0.806 0.838 0.319 7e-33
A0MT11322 Golgi to ER traffic prote N/A no 0.791 0.788 0.290 9e-29
Q7L5D6327 Golgi to ER traffic prote yes no 0.841 0.825 0.278 3e-28
A1Z3X3323 Golgi to ER traffic prote N/A no 0.791 0.786 0.290 4e-28
A4GWN3323 Golgi to ER traffic prote N/A no 0.791 0.786 0.297 2e-27
Q0P5I8325 Golgi to ER traffic prote yes no 0.791 0.781 0.294 2e-27
B5KFI0328 Golgi to ER traffic prote yes no 0.791 0.774 0.290 4e-27
A4QNE0325 Golgi to ER traffic prote yes no 0.788 0.778 0.296 5e-27
Q9D1H7327 Golgi to ER traffic prote yes no 0.791 0.776 0.290 5e-27
Q6GLK9325 Golgi to ER traffic prote N/A no 0.791 0.781 0.290 3e-26
>sp|Q54TH4|GET4_DICDI Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum GN=DDB_G0281815 PE=3 SV=1 Back     alignment and function desciption
 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 142/291 (48%), Gaps = 32/291 (10%)

Query: 14  AQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCG 73
           A+  +  LE    EGN+Y   Q YK++  R+   ++Y E + LL +G    L+  Q  C 
Sbjct: 2   AERVLANLEAKFTEGNYYDILQSYKALYNRFSTQKKYKETVTLLESGCNKFLEYKQWNCA 61

Query: 74  AELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKL 133
           A+LA   +E     K+ Y +E+ + + KI++ F                         K 
Sbjct: 62  ADLAKLLIECYKNFKIQYSDESKEPIIKIFKNF-------------------------KG 96

Query: 134 RVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPE 193
              G  SF++ AI+WS + G    GS E H +LA  L  E   +D  +   HF+ GN+  
Sbjct: 97  ECAGKISFMRDAIEWSSKNGGDSKGSEEFHTLLAITLSEEGDYIDAQK---HFIFGNDYF 153

Query: 194 KFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSD 253
            F   + N+       E DL + RAI   L L  +K A+ + +    +V    ++  PS 
Sbjct: 154 SFCEMLKNWTEDVDEEEKDLYITRAIFGLLCLKKLKQASDLYNLFTTKV----IKGDPSP 209

Query: 254 LIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGV 304
           L+ F  ++L TLERDALPLFN+LR  Y+ S++R+P F + LD IA  F+ V
Sbjct: 210 LLNFDRFLLLTLERDALPLFNLLRQKYERSLKRDPQFKKFLDQIANIFYNV 260
May play a role in insertion of tail-anchored proteins into the endoplasmic reticulum membrane.
Dictyostelium discoideum (taxid: 44689)
>sp|A0MT11|GET4_SALSA Golgi to ER traffic protein 4 homolog OS=Salmo salar GN=get4 PE=2 SV=1 Back     alignment and function description
>sp|Q7L5D6|GET4_HUMAN Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1 Back     alignment and function description
>sp|A1Z3X3|GET4_ORYLA Golgi to ER traffic protein 4 homolog OS=Oryzias latipes GN=get4 PE=2 SV=1 Back     alignment and function description
>sp|A4GWN3|GET4_TAKRU Golgi to ER traffic protein 4 homolog OS=Takifugu rubripes GN=get4 PE=2 SV=1 Back     alignment and function description
>sp|Q0P5I8|GET4_BOVIN Golgi to ER traffic protein 4 homolog OS=Bos taurus GN=GET4 PE=2 SV=1 Back     alignment and function description
>sp|B5KFI0|GET4_TAEGU Golgi to ER traffic protein 4 homolog OS=Taeniopygia guttata GN=GET4 PE=2 SV=1 Back     alignment and function description
>sp|A4QNE0|GET4_XENTR Golgi to ER traffic protein 4 homolog OS=Xenopus tropicalis GN=get4 PE=2 SV=1 Back     alignment and function description
>sp|Q9D1H7|GET4_MOUSE Golgi to ER traffic protein 4 homolog OS=Mus musculus GN=Get4 PE=2 SV=2 Back     alignment and function description
>sp|Q6GLK9|GET4B_XENLA Golgi to ER traffic protein 4 homolog B OS=Xenopus laevis GN=get4-b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
224109688322 predicted protein [Populus trichocarpa] 1.0 0.996 0.735 1e-143
225449158322 PREDICTED: Golgi to ER traffic protein 4 1.0 0.996 0.738 1e-142
255565818324 conserved hypothetical protein [Ricinus 1.0 0.990 0.719 1e-142
356576185323 PREDICTED: Golgi to ER traffic protein 4 0.996 0.990 0.710 1e-140
357443413323 hypothetical protein MTR_1g095910 [Medic 0.996 0.990 0.694 1e-137
358249304323 uncharacterized protein LOC100780059 [Gl 0.996 0.990 0.700 1e-136
30697809324 uncharacterized protein [Arabidopsis tha 0.996 0.987 0.648 1e-126
297797313324 hypothetical protein ARALYDRAFT_496506 [ 0.996 0.987 0.651 1e-125
224100845282 predicted protein [Populus trichocarpa] 0.878 1.0 0.737 1e-124
147819146391 hypothetical protein VITISV_021302 [Viti 0.862 0.708 0.722 1e-119
>gi|224109688|ref|XP_002315277.1| predicted protein [Populus trichocarpa] gi|222864317|gb|EEF01448.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/321 (73%), Positives = 286/321 (89%)

Query: 1   MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAG 60
           MSR+RP+R  LPPA+ENI KLE ++NEGN+YGAQQMYKSISARYV+AQR+SEALD+LH+G
Sbjct: 1   MSRERPRRATLPPAEENIKKLENVINEGNYYGAQQMYKSISARYVSAQRHSEALDILHSG 60

Query: 61  ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDD 120
           ACLQLKN Q+TCG+ELAV +VE LVK KV YD++ LD +RKIY+ FPQIP+P +L +D+D
Sbjct: 61  ACLQLKNGQVTCGSELAVIYVETLVKAKVPYDDDVLDCIRKIYKTFPQIPLPQDLGEDED 120

Query: 121 LHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMA 180
           + +L EALGAAK+RV+ C SFLKAAIKWS EFGA + GSPELHVMLAEY+YSESPELDM 
Sbjct: 121 MQQLNEALGAAKIRVDCCLSFLKAAIKWSAEFGAHRNGSPELHVMLAEYVYSESPELDMT 180

Query: 181 RVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK 240
           RVS+HFVRGNNP+KFAST+VNFMGKCYPGEDDLA+ARAILMYL++GN++DAN++MDE+KK
Sbjct: 181 RVSYHFVRGNNPKKFASTLVNFMGKCYPGEDDLAIARAILMYLAMGNLRDANFLMDELKK 240

Query: 241 QVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEK 300
             + K+  L  SDLIQFV ++L TL+RDALPLFNMLR  YK+SI+REPAFNE LD+IAE 
Sbjct: 241 HAQYKEHDLHRSDLIQFVNHLLPTLQRDALPLFNMLRTKYKSSIDREPAFNERLDEIAEL 300

Query: 301 FFGVKRRNPMQGIFGDIFKMM 321
           F+GV+RRNP+QG+FGDIFKMM
Sbjct: 301 FYGVQRRNPLQGMFGDIFKMM 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449158|ref|XP_002278274.1| PREDICTED: Golgi to ER traffic protein 4 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565818|ref|XP_002523898.1| conserved hypothetical protein [Ricinus communis] gi|223536828|gb|EEF38467.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356576185|ref|XP_003556214.1| PREDICTED: Golgi to ER traffic protein 4 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357443413|ref|XP_003591984.1| hypothetical protein MTR_1g095910 [Medicago truncatula] gi|355481032|gb|AES62235.1| hypothetical protein MTR_1g095910 [Medicago truncatula] gi|388501440|gb|AFK38786.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|358249304|ref|NP_001239772.1| uncharacterized protein LOC100780059 [Glycine max] gi|255636423|gb|ACU18550.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|30697809|ref|NP_201127.2| uncharacterized protein [Arabidopsis thaliana] gi|48958523|gb|AAT47814.1| At5g63220 [Arabidopsis thaliana] gi|51970596|dbj|BAD43990.1| putative protein [Arabidopsis thaliana] gi|332010336|gb|AED97719.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297797313|ref|XP_002866541.1| hypothetical protein ARALYDRAFT_496506 [Arabidopsis lyrata subsp. lyrata] gi|297312376|gb|EFH42800.1| hypothetical protein ARALYDRAFT_496506 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224100845|ref|XP_002312037.1| predicted protein [Populus trichocarpa] gi|222851857|gb|EEE89404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147819146|emb|CAN78083.1| hypothetical protein VITISV_021302 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2161917324 AT5G63220 "AT5G63220" [Arabido 0.996 0.987 0.629 1.1e-110
DICTYBASE|DDB_G0281815309 DDB_G0281815 "DUF410 family pr 0.501 0.521 0.375 6.3e-35
UNIPROTKB|A0MT11322 get4 "Golgi to ER traffic prot 0.548 0.546 0.292 1.1e-33
UNIPROTKB|A1Z3X3323 get4 "Golgi to ER traffic prot 0.551 0.547 0.301 3e-33
UNIPROTKB|A4GWN3323 get4 "Golgi to ER traffic prot 0.548 0.544 0.303 2.1e-32
UNIPROTKB|A4QNE0325 get4 "Golgi to ER traffic prot 0.548 0.541 0.308 2.6e-32
UNIPROTKB|B5KFI0328 GET4 "Golgi to ER traffic prot 0.548 0.536 0.297 3.4e-32
UNIPROTKB|Q0P5I8325 GET4 "Golgi to ER traffic prot 0.548 0.541 0.292 9.8e-31
UNIPROTKB|Q6GLK9325 get4-b "Golgi to ER traffic pr 0.548 0.541 0.297 4.2e-30
MGI|MGI:1914854327 Get4 "golgi to ER traffic prot 0.548 0.538 0.292 4.2e-30
TAIR|locus:2161917 AT5G63220 "AT5G63220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 204/324 (62%), Positives = 260/324 (80%)

Query:     1 MSRQRPKRTALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAG 60
             MSR+R KR  LPP QE+IDKL K++ EGN+YGA QMYKSISARYV AQR+SEALD+L +G
Sbjct:     1 MSRERIKRE-LPPVQEHIDKLRKVIEEGNYYGALQMYKSISARYVTAQRFSEALDILFSG 59

Query:    61 ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVP-H--NXXX 117
             AC++L++  + CGA+LA+ FV+ LVK K   ++E LDR+R I++LFP++PVP H  +   
Sbjct:    60 ACIELEHGLVNCGADLAILFVDTLVKAKSPCNDETLDRIRCIFKLFPRVPVPPHLVDVSD 119

Query:   118 XXXXXXXXXXXGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPEL 177
                        G A+ RVE  +SFL+AAIKWS EFG P+TG PELH ML +YLY+E PEL
Sbjct:   120 DEDVQNLQESLGEARSRVENLTSFLRAAIKWSAEFGGPRTGYPELHAMLGDYLYTECPEL 179

Query:   178 DMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237
             DM R+S HFVR  +PEKFAS +VNFMG+CYPGEDDLA+ARA+LMYLS+GNMKDAN++MDE
Sbjct:   180 DMVRISRHFVRAEDPEKFASMLVNFMGRCYPGEDDLAIARAVLMYLSMGNMKDANFMMDE 239

Query:   238 VKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDI 297
             +KKQ E K  +L  SDLIQF+ Y+L+TL+RDALPLFNMLR  YK+SI+R+   NE+LD+I
Sbjct:   240 IKKQAETKNPELSESDLIQFISYLLETLQRDALPLFNMLRVKYKSSIDRDQLLNELLDEI 299

Query:   298 AEKFFGVKRRNPMQGIFGDIFKMM 321
             AE+F+GV+R+NP+QG+FGDIFKMM
Sbjct:   300 AERFYGVQRKNPLQGMFGDIFKMM 323
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
DICTYBASE|DDB_G0281815 DDB_G0281815 "DUF410 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A0MT11 get4 "Golgi to ER traffic protein 4 homolog" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z3X3 get4 "Golgi to ER traffic protein 4 homolog" [Oryzias latipes (taxid:8090)] Back     alignment and assigned GO terms
UNIPROTKB|A4GWN3 get4 "Golgi to ER traffic protein 4 homolog" [Takifugu rubripes (taxid:31033)] Back     alignment and assigned GO terms
UNIPROTKB|A4QNE0 get4 "Golgi to ER traffic protein 4 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|B5KFI0 GET4 "Golgi to ER traffic protein 4 homolog" [Taeniopygia guttata (taxid:59729)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5I8 GET4 "Golgi to ER traffic protein 4 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GLK9 get4-b "Golgi to ER traffic protein 4 homolog B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:1914854 Get4 "golgi to ER traffic protein 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54TH4GET4_DICDINo assigned EC number0.31950.80680.8381yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
pfam04190251 pfam04190, DUF410, Protein of unknown function (DU 3e-20
>gnl|CDD|217953 pfam04190, DUF410, Protein of unknown function (DUF410) Back     alignment and domain information 
 Score = 87.9 bits (218), Expect = 3e-20
 Identities = 65/271 (23%), Positives = 111/271 (40%), Gaps = 41/271 (15%)

Query: 45  VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDR-VRKIY 103
           V  ++Y +A++LL++GA    +  Q    A+L    +E L K +VA  +  + R    I 
Sbjct: 1   VLQKKYEDAIELLYSGALFFFREKQYGSAADLTTYLLEVLEKAEVADSDSKVARLAELIN 60

Query: 104 ELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELH 163
           EL P  P     +                         +  AIKWS      K G P LH
Sbjct: 61  ELDPSEP---ERKK-----------------------CVDRAIKWS-TPSEGKYGDPALH 93

Query: 164 VMLAEYLYSESPELDMARVSFHFVRGNNPEKFAS--TIVNFMGKCYPGEDDLAVARAILM 221
            ++A+ L  E   ++ A    HF+ G++    A       +  + +  E D+ + RA+L 
Sbjct: 94  TLIAKKLVKED-NVESAE--NHFLLGDDGSSCAYFLLQEYWSFRGFEIEPDVFIVRAVLQ 150

Query: 222 YLSLGNMKDANYIMDEVKKQVENKQLQLQPSD--------LIQFVFYVLQTLERDALPLF 273
           YL L N   A     E       K  + +  +        L+ F+  +  T++      F
Sbjct: 151 YLCLKNFPFAVSSFTEYTAPFIKKHPKYEKYEAKFPFTYPLLNFLHLLFDTIDTKDKAQF 210

Query: 274 NMLRANYKASIEREPAFNEMLDDIAEKFFGV 304
             L ++Y+ S++R+ AF   L  I + +FG+
Sbjct: 211 LELTSSYQPSLKRDLAFIGYLAKIGQLYFGI 241

This family of proteins is from Caenorhabditis elegans and has no known function. The protein has some GO references indicating that the protein has a positive regulation of growth rate and is involved in nematode larval development. Length = 251

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
KOG3024312 consensus Uncharacterized conserved protein [Funct 100.0
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 100.0
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.44
KOG1586288 consensus Protein required for fusion of vesicles 98.1
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 95.65
KOG1463 411 consensus 26S proteasome regulatory complex, subun 93.76
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 93.43
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 92.51
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 92.51
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 92.12
KOG3687 1697 consensus Tuberin - Rap/ran-GTPase-activating prot 91.17
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 91.08
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 91.06
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 91.03
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 89.61
PRK10747398 putative protoheme IX biogenesis protein; Provisio 87.82
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 86.19
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 86.09
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 85.6
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 85.55
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 84.83
COG5159 421 RPN6 26S proteasome regulatory complex component [ 84.47
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 84.38
PRK11788389 tetratricopeptide repeat protein; Provisional 83.64
PLN03218 1060 maturation of RBCL 1; Provisional 81.68
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 80.99
>KOG3024 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-76  Score=544.80  Aligned_cols=280  Identities=32%  Similarity=0.526  Sum_probs=264.8

Q ss_pred             ChhHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCC
Q 020832           12 PPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAY   91 (321)
Q Consensus        12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~   91 (321)
                      .+++|++.|++++|+-|+||||||||||+++||+++|+|++|++|+++||+.|++.+|.+||+||+++++|||+++.+..
T Consensus         4 ~~~~R~e~kl~a~~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad   83 (312)
T KOG3024|consen    4 FTLQRVEGKLRASIELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVAD   83 (312)
T ss_pred             hHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 020832           92 DNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLY  171 (321)
Q Consensus        92 ~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~  171 (321)
                      +..++.|+.+++..+++++|+|                         ++||++||+||++.|++|+|||+||.++|.++|
T Consensus        84 ~~~~~anl~~ll~e~~~~eper-------------------------~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~  138 (312)
T KOG3024|consen   84 SLLKVANLAELLGEADPSEPER-------------------------KTFVRRAIKWSKEFGEGKYGHPELHALLADKLW  138 (312)
T ss_pred             hHHHHHHHHHHHhhcCCCccHH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence            8889999999999999999877                         999999999999998899999999999999999


Q ss_pred             hcCCCCChHHHhhHhhcCCChHHHHH-HHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHH----------
Q 020832          172 SESPELDMARVSFHFVRGNNPEKFAS-TIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK----------  240 (321)
Q Consensus       172 ~e~~~~~~~~A~~Hfl~~~~~~~~a~-~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~----------  240 (321)
                      +++   ++++|++||++|+|++.||. +++.|+.++..+|.|.|++|+||||||+.|..+|...+.+|++          
T Consensus       139 ~e~---~~~~a~~HFll~~d~s~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~  215 (312)
T KOG3024|consen  139 TED---NVEEARRHFLLSEDGSKFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMD  215 (312)
T ss_pred             hcc---cHHHHHhHhhhcCChHHHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccch
Confidence            999   99999999999999999999 6677999999999999999999999999999999999999998          


Q ss_pred             --Hhhhh--ccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHHHHHhcCCCCCC--CchHhH
Q 020832          241 --QVENK--QLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRN--PMQGIF  314 (321)
Q Consensus       241 --~~~~~--~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig~~yFgi~~~~--~l~~m~  314 (321)
                        .+.+.  .+.|..+|+|||+|+|+.||++++.+.|..||.+|+++|+||+.|++||++||++||||+|++  +++|||
T Consensus       216 e~~~~~~~k~~~~~~~pllNFl~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~IgelyFgi~~~~~~slgglf  295 (312)
T KOG3024|consen  216 EIKHKAGTKNPFPFEYPLLNFLHFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGELYFGIRPKQPLSLGGLF  295 (312)
T ss_pred             hhcccccccCCCccccchHHHHHHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHHHcCCCCCccccHhhHH
Confidence              33321  335568999999999999999999999999999999999999999999999999999999864  367999


Q ss_pred             HHhhh
Q 020832          315 GDIFK  319 (321)
Q Consensus       315 ~~lf~  319 (321)
                      |+||+
T Consensus       296 gdlfs  300 (312)
T KOG3024|consen  296 GDLFS  300 (312)
T ss_pred             HHHhc
Confidence            99985

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
3lpz_A336 Crystal Structure Of C. Therm. Get4 Length = 336 3e-16
2wpv_A312 Crystal Structure Of S. Cerevisiae Get4-Get5 Comple 1e-07
3lku_A292 Crystal Structure Of S. Cerevisiae Get4 In Complex 2e-07
>pdb|3LPZ|A Chain A, Crystal Structure Of C. Therm. Get4 Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 54/326 (16%)
Query: 18  IDKLEKIVNEGN---FYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGA 74
           I +L++ + EG     Y A Q  + ++ARY     ++ A+D+L + +   L++ Q   G 
Sbjct: 16  IARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75
Query: 75  ELAVSFVEALVKGKVAYDNENLDRVRKIYELF-PQIPVPHNXXXXXXXXXXXXXXGAAKL 133
           +LAV  V+   +     D  +  ++     LF P  PV                      
Sbjct: 76  DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKR------------------- 116
Query: 134 RVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGN--N 191
                  F+K  I WS +FG    G PELH ++   LY E  E + A    H V G   +
Sbjct: 117 -------FVKEMIDWSKKFGDYPAGDPELHHVVGT-LYVEEGEFEAAEK--HLVLGTKES 166
Query: 192 PEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDAN---------YIMDEVKKQV 242
           PE  A     +  +       L  ARA+L YL + N++ AN          + D     V
Sbjct: 167 PEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTV 226
Query: 243 EN-----KQLQLQPS-DLIQFVFYVLQTLERDALPLFNMLRANYKASI-EREPAFNEMLD 295
           +N      +L++ PS  L+ F+  +L ++++ +  LF  L++ Y+A++ E    ++  L+
Sbjct: 227 QNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALE 286
Query: 296 DIAEKFFGVKR---RNPMQGIFGDIF 318
            IAE +FG++R    NP+  + G +F
Sbjct: 287 LIAEMYFGIQRPRQSNPLLDMMGSLF 312
>pdb|2WPV|A Chain A, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex Length = 312 Back     alignment and structure
>pdb|3LKU|A Chain A, Crystal Structure Of S. Cerevisiae Get4 In Complex With An N-Terminal Fragment Of Get5 Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 4e-78
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 9e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Length = 336 Back     alignment and structure
 Score =  241 bits (615), Expect = 4e-78
 Identities = 74/341 (21%), Positives = 132/341 (38%), Gaps = 52/341 (15%)

Query: 5   RPKRTALPPAQENIDKLEKIVNEGN---FYGAQQMYKSISARYVAAQRYSEALDLLHAGA 61
                     +  I +L++ + EG     Y A Q  + ++ARY     ++ A+D+L + +
Sbjct: 3   HHHHHHSNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS 62

Query: 62  CLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDL 121
              L++ Q   G +LAV  V+   +     D  +  ++     LF               
Sbjct: 63  QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP------------- 109

Query: 122 HELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMAR 181
                              F+K  I WS +FG    G PELH ++      E  E + A 
Sbjct: 110 ------------GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG-EFEAAE 156

Query: 182 VSFHFVRGN--NPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVK 239
              H V G   +PE  A     +  +       L  ARA+L YL + N++ AN       
Sbjct: 157 --KHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214

Query: 240 KQVENKQLQLQPSD---------------LIQFVFYVLQTLERDALPLFNMLRANYKASI 284
             +      L   +               L+ F+  +L ++++ +  LF  L++ Y+A++
Sbjct: 215 SALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANL 274

Query: 285 ER-EPAFNEMLDDIAEKFFGVKR---RNPMQGIFGDIFKMM 321
                 ++  L+ IAE +FG++R    NP+  + G +F   
Sbjct: 275 NELNGIWDTALELIAEMYFGIQRPRQSNPLLDMMGSLFGGG 315
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 100.0
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 100.0
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 98.15
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 98.1
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 97.9
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 96.93
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.86
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 96.78
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 96.35
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 96.2
3sf4_A 406 G-protein-signaling modulator 2; tetratricopeptide 96.04
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 96.0
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 95.96
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 95.88
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 95.74
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 95.66
3q15_A378 PSP28, response regulator aspartate phosphatase H; 95.65
3q15_A378 PSP28, response regulator aspartate phosphatase H; 95.56
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 95.46
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 95.38
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 95.35
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 95.3
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 95.25
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 95.18
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 94.76
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 94.64
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 94.61
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 94.5
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 94.49
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 94.46
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 94.33
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 94.29
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 94.14
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 94.12
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 93.98
4eqf_A365 PEX5-related protein; accessory protein, tetratric 93.65
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 93.53
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 93.48
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 92.85
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 92.84
3u4t_A272 TPR repeat-containing protein; structural genomics 92.69
4eqf_A365 PEX5-related protein; accessory protein, tetratric 92.17
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 92.09
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 91.87
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 91.34
2gw1_A514 Mitochondrial precursor proteins import receptor; 91.15
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 90.85
3u3w_A293 Transcriptional activator PLCR protein; ternary co 90.63
3u3w_A293 Transcriptional activator PLCR protein; ternary co 90.48
4i17_A228 Hypothetical protein; TPR repeats protein, structu 90.32
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 90.18
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 90.14
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 89.92
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 89.57
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 89.43
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 89.4
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 89.33
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 89.26
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 88.99
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 88.9
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 88.1
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 87.91
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 87.52
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 87.23
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 86.82
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 86.73
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 85.92
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 85.83
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 85.14
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 85.1
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 84.91
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 84.87
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 84.23
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 84.04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 83.0
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 82.82
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 82.52
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 82.13
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 81.94
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 81.48
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 81.44
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 81.25
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 81.01
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 80.92
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 80.69
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 80.48
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
Probab=100.00  E-value=2e-89  Score=656.21  Aligned_cols=281  Identities=25%  Similarity=0.416  Sum_probs=268.6

Q ss_pred             CChhHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Q 020832           11 LPPAQENIDKLEKIVNEGNF---YGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG   87 (321)
Q Consensus        11 ~~~~~r~l~rl~~~i~~G~~---YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~   87 (321)
                      +.+++||++||+++|++|+|   |||||||||+++||++++||+||+||||+||+.|+++||++||+||+++|||||+++
T Consensus         9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~   88 (336)
T 3lpz_A            9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQA   88 (336)
T ss_dssp             -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence            46899999999999999999   999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 020832           88 KVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLA  167 (321)
Q Consensus        88 ~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la  167 (321)
                      +++||+++++||++|++.||+++|+|                         ++||++||+||+++|++|+|||+||+++|
T Consensus        89 ~~~~~~~~~~rL~~L~~~~~~~~p~r-------------------------~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig  143 (336)
T 3lpz_A           89 GQRVDGASRGKLLGCLRLFQPGEPVR-------------------------KRFVKEMIDWSKKFGDYPAGDPELHHVVG  143 (336)
T ss_dssp             TCCCCHHHHHHHHHHHTTSCTTCHHH-------------------------HHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCcHH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence            99999999999999999999999877                         99999999999999999999999999999


Q ss_pred             HHHHhcCCCCChHHHhhHhhcCCCh--HHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhh
Q 020832          168 EYLYSESPELDMARVSFHFVRGNNP--EKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENK  245 (321)
Q Consensus       168 ~~~~~e~~~~~~~~A~~Hfl~~~~~--~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~  245 (321)
                      ++||+|+   +|++|++|||+|+|+  +.||+||++|+++++++|.|+|++||||+|||++|+++|+++++.|++++++.
T Consensus       144 ~~~~~e~---~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~  220 (336)
T 3lpz_A          144 TLYVEEG---EFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVED  220 (336)
T ss_dssp             HHHHHTT---CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccC---CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence            9999999   999999999999996  59999999999999999999999999999999999999999999999988543


Q ss_pred             ccC---------------CCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcch-hHHHHHHHHHHHhcCCCC---
Q 020832          246 QLQ---------------LQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREP-AFNEMLDDIAEKFFGVKR---  306 (321)
Q Consensus       246 ~~~---------------~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~-~~~~~L~~Ig~~yFgi~~---  306 (321)
                      .++               +|++|||||+|||++|||+++.++|+.||++|+++|+||| +|.+|||+||++||||+|   
T Consensus       221 ~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~prq  300 (336)
T 3lpz_A          221 NKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQRPRQ  300 (336)
T ss_dssp             CTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCCCCC
T ss_pred             CCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            322               5679999999999999999999999999999999999999 999999999999999986   


Q ss_pred             CCCchHhHHHhhh
Q 020832          307 RNPMQGIFGDIFK  319 (321)
Q Consensus       307 ~~~l~~m~~~lf~  319 (321)
                      +|+|+||||+|||
T Consensus       301 ~n~L~~mmg~lFg  313 (336)
T 3lpz_A          301 SNPLLDMMGSLFG  313 (336)
T ss_dssp             CCHHHHHHHHHHC
T ss_pred             CCchHHHHHHhcC
Confidence            4679999999996
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 98.13
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 96.79
d1hz4a_366 Transcription factor MalT domain III {Escherichia 92.37
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 91.6
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 85.9
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 85.09
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 85.05
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 83.36
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=0.00012  Score=64.41  Aligned_cols=265  Identities=14%  Similarity=0.064  Sum_probs=164.5

Q ss_pred             hhHHHHHHHHHHhccC-------------ChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHH
Q 020832           13 PAQENIDKLEKIVNEG-------------NFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVS   79 (321)
Q Consensus        13 ~~~r~l~rl~~~i~~G-------------~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~   79 (321)
                      -++.+|.+.+++...+             +|=||.-.|.-..+=|..+++|++|++...+++...-+.+.....++.-.-
T Consensus         3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~   82 (290)
T d1qqea_           3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE   82 (290)
T ss_dssp             CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4677788877776643             456788889999999999999999999998888887777777666666666


Q ss_pred             HHHHHhhCCCCCC-hhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCC
Q 020832           80 FVEALVKGKVAYD-NENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTG  158 (321)
Q Consensus        80 lvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~G  158 (321)
                      +-.+|.+.+.+-. .+...+.+++....+....     ...-...+-+.........+....+..+|+.+....+.+ .-
T Consensus        83 ~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~-~~  156 (290)
T d1qqea_          83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR-----GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV-AL  156 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred             HHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh-----HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch-hh
Confidence            6778877653322 1333555555543321100     000000111111000011122366778888777644321 11


Q ss_pred             CHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhc-cCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 020832          159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGK-CYPGEDDLAVARAILMYLSLGNMKDANYIMDE  237 (321)
Q Consensus       159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~-~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~  237 (321)
                      -...+..+|.+|.+.|   +|.+|..+|-.         .+...... .......-...++++.+++.++...|...++.
T Consensus       157 ~~~~~~~la~~~~~~g---~y~~A~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         157 SNKCFIKCADLKALDG---QYIEASDIYSK---------LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHH---------HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             hhhHHHHHHHHHHHcC---hHHHHHHHHHH---------HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            1245777899999999   99999976521         11111111 11122333566777888999999999998877


Q ss_pred             HHHHhhhhccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHHHH
Q 020832          238 VKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAE  299 (321)
Q Consensus       238 f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig~  299 (321)
                      +.+..    +.++...--.|+.=|+.+++.++...|..-...|...++-||.-...|.+|..
T Consensus       225 ~~~~~----~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~k~  282 (290)
T d1qqea_         225 GQSED----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE  282 (290)
T ss_dssp             GGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred             HHHhC----CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            66533    23333344567777888898888888888888898888788877778888765
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure